BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021095
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 287 bits (734), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 159/266 (59%), Positives = 190/266 (71%), Gaps = 12/266 (4%)
Query: 5 SGSLDNWRNYFRS-ANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGC 63
SGSLD+WR YFR + DIF IIDHA+MVAA DCP +FK RRD+IAE LF+C++ RC GC
Sbjct: 4 SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63
Query: 64 DRVELAVPSGNEFDDDEEDCKRDGC----EFE-AGGSKESKVNSCRDDHVSNQIVSNFSS 118
D +EL+VP +E + G ++E AGGSKESK NS R D+ NQIVSN++
Sbjct: 64 DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDN--NQIVSNYTF 121
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
D AEAL+DEIEE S V EV RIKEIL N DE +SVL +SLR L+LM+L VD LK+TE
Sbjct: 122 -DEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 180
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAI--AEGTPDSVNPSVVDEEE 236
IGKAVNGLRKH S +IR LA+TLI WK+LVD+WVN TK I AEGTP+S NPSV+DEEE
Sbjct: 181 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 240
Query: 237 GLPSPPLDELAFFTGPSAGIELSQVF 262
PS P D + FT G E+S F
Sbjct: 241 AFPSLPYD-VDIFTPEPNGFEISHFF 265
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 166/281 (59%), Gaps = 41/281 (14%)
Query: 5 SGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGCD 64
S SLD WR YFR + DIF IIDHA+MVAA D PKEFK R DRIAE LF+CK++RC GCD
Sbjct: 7 SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66
Query: 65 RVELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGDIAEA 124
+EL++ +G+E V V +
Sbjct: 67 HLELSI-AGDEA------------------------------AVEIVGVGGGGDRGDSGV 95
Query: 125 LTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVN 184
T E EE S V EV+RI++IL N DE DSVL ESLR+L+ M+++VD LK TEIGKAVN
Sbjct: 96 ATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVN 155
Query: 185 GLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIA--EGTPDSVNPSVVDEEEGLPSPP 242
GLR+H S +I LA+TL WK LVD+W+N + +A EGTP+S+N SV+DEEE PSPP
Sbjct: 156 GLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEEAFPSPP 215
Query: 243 LDELAFFTGPSAGIELSQVFLMAWMILEILETVGNSSRTVK 283
D L + G ELSQ IL+ L+ GN +V+
Sbjct: 216 HD-LDIYAPEPNGFELSQ-------ILDCLDCDGNPRHSVE 248
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 46/225 (20%)
Query: 8 LDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKL-TRCSGCDRV 66
LD++R+ +A D++ ID A++VA+LD +E K RRD I E+L+ + +C CD
Sbjct: 3 LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 60
Query: 67 ELAVPSGNEFDDDEEDCKRDGCEFEAGGS-KESKVNSCRDDHVSNQIVSNFSSGDIAEAL 125
F GG+ E+ + + V + G + A
Sbjct: 61 -----------------------FGGGGNVTEAAIGRVNNGRVHEETEEEDEEG-VTAAA 96
Query: 126 TDEIEEESQVVGE-----------------VLRIKEILHNSRDESDSVLFESLRRLQLMA 168
+E+ E+S V + ++ IKE L + D S+ L E L+ L+ M
Sbjct: 97 EEEVREKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLEDP-DLSEESLVELLQNLEDMD 155
Query: 169 LTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWV 213
+T L+ T+IG+ VN +RKH S +R LA+ L++ WK+ VDEWV
Sbjct: 156 ITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWV 200
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L SR +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R ++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKNTEGAL-DLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI WK L+D
Sbjct: 65 VALAKVLIRNWKQLLD 80
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D ++
Sbjct: 30 LRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRNQ 89
Query: 220 AEGTPDSVNPS-----VVDEEEGLPSPP 242
GTP + S D P PP
Sbjct: 90 GRGTPLPTSSSKDASRTTDLSCKKPDPP 117
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D ++
Sbjct: 30 LRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQ 89
Query: 220 AEGTPDSVNPS-----VVDEEEGLPSPP 242
GTP + S D P PP
Sbjct: 90 GRGTPLPTSSSKDASGTTDLSCKKPDPP 117
>sp|A5PKE4|TEAN2_BOVIN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Bos taurus GN=TCEANC2
PE=2 SV=1
Length = 208
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
G I + T E + V+ ++ R K +L D+S L E+LR L+ + + LK+T+
Sbjct: 22 GKIYKQATIESLKRVVVIEDIKRWKTMLELP-DQSKENLVEALRELKKKIPSREVLKSTK 80
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
IG VN +R+H ++ LAR + W+ +++ VN
Sbjct: 81 IGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHVN 116
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D +
Sbjct: 31 LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKARER 90
Query: 220 AEGTP 224
G P
Sbjct: 91 GRGMP 95
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D
Sbjct: 31 LRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLD 81
>sp|Q96MN5|TEAN2_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Homo sapiens GN=TCEANC2
PE=1 SV=1
Length = 208
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 103 CRDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLR 162
R + N S G + + T E + VV ++ R K +L D++ L E+L+
Sbjct: 6 IRTPRIQNSPQKKDSGGKVYKQATIESLKRVVVVEDIKRWKTMLELP-DQTKENLVEALQ 64
Query: 163 RLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
L+ + + LK+T IG VN +RKH ++ LAR + WK ++ N
Sbjct: 65 ELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSN 116
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN LRK + +++
Sbjct: 4 EVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
L+ L+ + +T++ L++T IG +VN +RK + +++ LA++LI+ WK L+D
Sbjct: 28 LKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 78
>sp|B0UYI1|TEAN2_DANRE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Danio rerio GN=tceanc2
PE=3 SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 135 VVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHG-SKQ 193
V+ ++ R K IL ++ + E+L+ L + + LK+T IG VN LRKH +
Sbjct: 37 VIEDIERYKSILELPGQPKEN-MIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPE 95
Query: 194 IRHLARTLIEGWKDLVDEWVN 214
I+ LA+ + + W+ ++E N
Sbjct: 96 IKSLAKEVYKHWRTFIEEHAN 116
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 OS=Rattus
norvegicus GN=Tceb3 PE=1 SV=1
Length = 773
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 168 ALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
+TVD L T +GK VN RKH +Q+ + AR L+ WK LV
Sbjct: 37 PITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 168 ALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNA 215
+TVD L T +GK VN LRKH + + AR L+ WK LV NA
Sbjct: 63 PITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNA 108
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 OS=Mus musculus
GN=Tceb3 PE=1 SV=3
Length = 773
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 168 ALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
+TVD L T +GK VN RKH +Q+ + AR L+ WK LV
Sbjct: 37 PITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 136 VGEVLRIKEILHNS-RDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQI 194
+ E+++ +E L + +D E L+ + +T D LK+T+IGK+V LR H I
Sbjct: 1 MQEIIKCREQLEKAIKDGEFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGI 60
Query: 195 RHLARTLIEGWK 206
++ LI+ WK
Sbjct: 61 SSQSKELIDKWK 72
>sp|Q8R2M0|TEAN2_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Mus musculus GN=Tceanc2
PE=2 SV=2
Length = 207
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%)
Query: 151 DESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVD 210
D++ L +L+ L+ + + L++T IG AVN +R+H ++ LA+ + WK ++
Sbjct: 52 DQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEVAGLAKEVYTEWKTFIE 111
Query: 211 EWVN 214
+ ++
Sbjct: 112 KHLD 115
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 OS=Homo
sapiens GN=TCEB3B PE=1 SV=2
Length = 753
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 157 LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
L + L++L + +T D L T I K V LRKH + + AR L WK LV
Sbjct: 27 LEKYLQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLV 77
>sp|Q3SY89|EA3L1_HUMAN RNA polymerase II transcription factor SIII subunit A3-like-1
OS=Homo sapiens GN=TCEB3CL PE=2 SV=1
Length = 546
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 157 LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
L + L++L + +T D L T I K V LRKH + + AR L WK LV
Sbjct: 27 LEKYLQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLV 77
>sp|A6NLF2|EA3L2_HUMAN RNA polymerase II transcription factor SIII subunit A3-like-2
OS=Homo sapiens GN=TCEB3CL2 PE=2 SV=1
Length = 546
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 157 LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
L + L++L + +T D L T I K V LRKH + + AR L WK LV
Sbjct: 27 LEKYLQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLV 77
>sp|Q8NG57|ELOA3_HUMAN RNA polymerase II transcription factor SIII subunit A3 OS=Homo
sapiens GN=TCEB3C PE=1 SV=2
Length = 546
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 157 LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
L + L++L + +T D L T I K V LRKH + + AR L WK LV
Sbjct: 27 LEKYLQKLSALPMTADILAETGIRKTVKRLRKH--QHVGDFARDLAARWKKLV 77
>sp|Q5XIC7|TEAN2_RAT Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Rattus norvegicus
GN=Tceanc2 PE=2 SV=1
Length = 207
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 135 VVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQI 194
V+ ++ R K +L +++ L +L+ L+ + + L++T IG AVN +R+H ++
Sbjct: 37 VIEDIKRWKTVLELP-EQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEV 95
Query: 195 RHLARTLIEGWKDLVD 210
LA+ + WK ++
Sbjct: 96 AGLAKEVYTEWKTFIE 111
>sp|Q8TB03|CX038_HUMAN Uncharacterized protein CXorf38 OS=Homo sapiens GN=CXorf38 PE=1
SV=1
Length = 319
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 65 RVELAVPSGNEFDDDEEDCKRDGCEFEAGGS-KESKVNSCRDDHVSNQIVSNFSSGDIAE 123
R+E + S EED +RDGCE E G ES+VN + ++ + + E
Sbjct: 204 RIEQLLTSDWAVHIPEED-QRDGCECEMGTYLSESQVNEIEMQLLKEKLQEIYLQAEEQE 262
Query: 124 ALTDEIEEESQVVGEVLRIKEILHNSRDE 152
L +E+ +VV E LR E L N E
Sbjct: 263 VLPEELSNRLEVVKEFLRNNEDLRNGLTE 291
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 156 VLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQ-IRHLARTLIEGWKDLVDEWVN 214
+ E + L+ +T + L+ T +GK +N +RK S + + A+ L+ W+ L+ E V
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRNWQKLI-EPVT 88
Query: 215 ATKAIAEGTPD 225
+ + G P+
Sbjct: 89 QNEQLVRGIPN 99
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 152 ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
E + L + +L + + + L+ T IGK VN LRK S ++ A+TL+ WK +V
Sbjct: 23 EDEQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRK-ISGEVGVAAKTLVTKWKAMV 79
>sp|P65232|KPRS_MYCTU Ribose-phosphate pyrophosphokinase OS=Mycobacterium tuberculosis
GN=prs PE=1 SV=1
Length = 326
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 93 GGSKESKVNSCRDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHN 148
GG + ++ RD V NQ+VSN GD+A I++ G + +LHN
Sbjct: 193 GGVPLAFIHKTRDPRVPNQVVSNRVVGDVAGRTCVLIDDMIDTGGTIAGAVALLHN 248
>sp|P65233|KPRS_MYCBO Ribose-phosphate pyrophosphokinase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=prs PE=3 SV=1
Length = 326
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 93 GGSKESKVNSCRDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHN 148
GG + ++ RD V NQ+VSN GD+A I++ G + +LHN
Sbjct: 193 GGVPLAFIHKTRDPRVPNQVVSNRVVGDVAGRTCVLIDDMIDTGGTIAGAVALLHN 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,129,913
Number of Sequences: 539616
Number of extensions: 4699106
Number of successful extensions: 15235
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 15138
Number of HSP's gapped (non-prelim): 116
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)