Query 021097
Match_columns 317
No_of_seqs 164 out of 1495
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-62 4.4E-67 447.1 30.2 279 5-288 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 4.3E-60 9.3E-65 424.1 27.8 289 4-297 11-335 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 1.3E-55 2.9E-60 409.0 28.5 279 5-288 13-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.9E-55 6.2E-60 402.6 28.7 272 7-285 1-316 (317)
5 PRK10625 tas putative aldo-ket 100.0 3.1E-55 6.7E-60 407.0 29.2 278 5-287 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 7.3E-54 1.6E-58 377.2 22.7 232 4-289 2-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 5.3E-53 1.2E-57 387.2 27.8 261 7-288 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-50 2.5E-55 367.0 27.9 254 7-284 1-284 (285)
9 PRK10376 putative oxidoreducta 100.0 1.3E-49 2.8E-54 360.7 27.2 253 3-288 3-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 8.2E-50 1.8E-54 361.1 22.1 250 19-286 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 8.9E-49 1.9E-53 345.0 22.0 234 7-291 6-289 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.5E-48 5.5E-53 348.2 24.5 220 15-288 1-253 (267)
13 PRK14863 bifunctional regulato 100.0 6.2E-48 1.3E-52 349.3 20.4 244 14-286 2-281 (292)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-46 2.3E-51 338.9 22.8 228 7-289 6-264 (275)
15 COG4989 Predicted oxidoreducta 100.0 6.2E-46 1.3E-50 313.9 20.4 258 5-288 1-294 (298)
16 KOG1576 Predicted oxidoreducta 100.0 3.3E-45 7.1E-50 311.7 20.9 284 3-309 20-338 (342)
17 COG1453 Predicted oxidoreducta 100.0 8.6E-45 1.9E-49 323.0 20.2 247 5-288 1-286 (391)
18 KOG0259 Tyrosine aminotransfer 82.4 25 0.00055 33.0 11.4 152 16-185 62-243 (447)
19 COG1748 LYS9 Saccharopine dehy 82.2 7.7 0.00017 36.7 8.3 81 38-133 79-159 (389)
20 PF01904 DUF72: Protein of unk 74.8 30 0.00065 30.1 9.4 125 52-180 19-148 (230)
21 TIGR00126 deoC deoxyribose-pho 73.2 60 0.0013 27.9 11.8 132 34-180 14-151 (211)
22 COG1801 Uncharacterized conser 72.7 60 0.0013 29.0 10.9 153 18-177 3-164 (263)
23 PRK09856 fructoselysine 3-epim 69.0 53 0.0012 29.0 10.0 104 111-235 19-144 (275)
24 PRK08392 hypothetical protein; 63.4 95 0.0021 26.5 10.8 22 40-61 16-37 (215)
25 PRK00730 rnpA ribonuclease P; 62.5 47 0.001 26.5 7.2 63 78-149 46-110 (138)
26 PF07994 NAD_binding_5: Myo-in 60.9 18 0.00039 32.9 5.2 129 103-265 131-285 (295)
27 PF03102 NeuB: NeuB family; I 57.5 98 0.0021 27.2 9.1 123 35-179 53-199 (241)
28 PF00875 DNA_photolyase: DNA p 55.7 32 0.0007 27.9 5.6 63 108-181 56-124 (165)
29 COG1751 Uncharacterized conser 53.8 50 0.0011 26.9 6.0 77 32-120 8-85 (186)
30 COG0159 TrpA Tryptophan syntha 53.4 1.7E+02 0.0036 26.2 12.7 27 36-62 29-55 (265)
31 TIGR00126 deoC deoxyribose-pho 49.4 1.4E+02 0.003 25.7 8.6 72 36-121 130-205 (211)
32 PRK04527 argininosuccinate syn 48.6 80 0.0017 30.1 7.5 119 36-178 40-169 (400)
33 PF05690 ThiG: Thiazole biosyn 46.8 2E+02 0.0044 25.3 12.0 137 18-178 9-148 (247)
34 PF01261 AP_endonuc_2: Xylose 46.2 43 0.00093 27.8 5.0 54 164-235 74-127 (213)
35 COG1168 MalY Bifunctional PLP- 44.6 2E+02 0.0044 27.1 9.3 41 140-180 147-197 (388)
36 PRK00087 4-hydroxy-3-methylbut 44.3 3.3E+02 0.0071 27.8 11.7 180 41-265 78-269 (647)
37 PF01890 CbiG_C: Cobalamin syn 44.1 91 0.002 24.2 6.1 56 100-182 11-66 (121)
38 PF11020 DUF2610: Domain of un 41.3 70 0.0015 22.9 4.4 28 216-243 48-75 (82)
39 PRK07027 cobalamin biosynthesi 41.3 75 0.0016 24.8 5.3 56 100-182 13-68 (126)
40 PRK06424 transcription factor; 41.1 1.2E+02 0.0027 24.3 6.6 83 163-246 22-110 (144)
41 PRK00507 deoxyribose-phosphate 40.9 1.4E+02 0.003 25.9 7.4 75 36-121 134-209 (221)
42 PRK08609 hypothetical protein; 40.4 89 0.0019 31.3 6.9 22 40-61 351-372 (570)
43 PRK05283 deoxyribose-phosphate 40.1 2E+02 0.0044 25.6 8.3 78 36-123 144-227 (257)
44 PF14871 GHL6: Hypothetical gl 38.3 29 0.00064 27.4 2.6 25 160-184 43-67 (132)
45 PRK00164 moaA molybdenum cofac 38.3 3.1E+02 0.0068 25.0 10.6 132 35-186 49-201 (331)
46 COG5016 Pyruvate/oxaloacetate 38.2 3.7E+02 0.008 25.8 12.8 137 36-187 96-239 (472)
47 TIGR03849 arch_ComA phosphosul 37.4 99 0.0022 27.2 5.9 72 107-180 11-90 (237)
48 PRK07379 coproporphyrinogen II 37.0 3.4E+02 0.0074 25.7 10.1 27 101-128 179-205 (400)
49 PRK09058 coproporphyrinogen II 36.8 2.1E+02 0.0046 27.6 8.7 89 100-189 226-334 (449)
50 PF13407 Peripla_BP_4: Peripla 36.7 89 0.0019 26.8 5.7 75 104-183 14-89 (257)
51 PRK05660 HemN family oxidoredu 36.4 3.7E+02 0.008 25.2 12.7 88 101-189 171-272 (378)
52 PF03851 UvdE: UV-endonuclease 35.1 63 0.0014 29.1 4.4 81 164-270 48-128 (275)
53 PLN02591 tryptophan synthase 34.8 3.2E+02 0.007 24.1 12.2 113 36-180 14-137 (250)
54 PF02679 ComA: (2R)-phospho-3- 34.4 46 0.00099 29.4 3.4 70 107-180 24-103 (244)
55 cd00945 Aldolase_Class_I Class 34.2 2.6E+02 0.0056 22.8 11.4 99 36-150 11-110 (201)
56 cd00959 DeoC 2-deoxyribose-5-p 33.7 2.9E+02 0.0063 23.3 11.8 132 35-181 14-151 (203)
57 cd06543 GH18_PF-ChiA-like PF-C 32.5 3.8E+02 0.0083 24.3 14.4 164 14-186 67-265 (294)
58 PRK15052 D-tagatose-1,6-bispho 32.4 62 0.0014 30.8 4.1 47 13-60 75-128 (421)
59 PRK09206 pyruvate kinase; Prov 32.1 4.9E+02 0.011 25.4 13.4 77 36-132 171-247 (470)
60 COG0218 Predicted GTPase [Gene 31.9 3.3E+02 0.0071 23.3 9.7 98 38-147 91-196 (200)
61 PF08013 Tagatose_6_P_K: Tagat 31.2 43 0.00093 31.9 2.8 48 13-61 78-132 (424)
62 TIGR02810 agaZ_gatZ D-tagatose 30.3 73 0.0016 30.4 4.1 47 13-60 74-127 (420)
63 KOG3157 Proline synthetase co- 30.3 2.7E+02 0.0059 24.0 7.1 27 220-246 187-213 (244)
64 PRK15458 tagatose 6-phosphate 30.2 73 0.0016 30.4 4.1 48 13-61 78-132 (426)
65 PRK06294 coproporphyrinogen II 30.1 4.6E+02 0.0099 24.5 9.6 28 100-128 166-193 (370)
66 PF11242 DUF2774: Protein of u 30.0 76 0.0017 21.5 3.0 22 224-245 15-36 (63)
67 PF14502 HTH_41: Helix-turn-he 29.7 62 0.0013 20.8 2.5 29 223-251 7-37 (48)
68 TIGR02666 moaA molybdenum cofa 29.7 4.4E+02 0.0095 24.1 13.5 131 35-186 43-196 (334)
69 TIGR00381 cdhD CO dehydrogenas 29.4 3.4E+02 0.0074 25.7 8.3 24 164-187 230-253 (389)
70 PLN02765 pyruvate kinase 29.1 5.8E+02 0.013 25.3 12.1 103 36-179 205-311 (526)
71 cd03319 L-Ala-DL-Glu_epimerase 29.0 4.4E+02 0.0094 23.8 13.3 129 36-186 134-291 (316)
72 PRK12360 4-hydroxy-3-methylbut 29.0 4.4E+02 0.0094 23.8 12.2 43 224-267 226-274 (281)
73 COG0274 DeoC Deoxyribose-phosp 28.6 4E+02 0.0087 23.3 16.4 135 34-182 20-161 (228)
74 PRK04452 acetyl-CoA decarbonyl 28.4 3.4E+02 0.0074 25.0 8.1 20 164-183 165-184 (319)
75 COG2185 Sbm Methylmalonyl-CoA 28.3 3.2E+02 0.0069 22.0 8.1 67 40-122 28-95 (143)
76 KOG2264 Exostosin EXT1L [Signa 28.2 1.5E+02 0.0032 29.5 5.8 58 64-136 632-691 (907)
77 PF01118 Semialdhyde_dh: Semia 27.9 88 0.0019 23.9 3.7 28 36-63 75-102 (121)
78 PF03851 UvdE: UV-endonuclease 27.5 4.6E+02 0.0099 23.6 11.4 130 39-178 46-207 (275)
79 PF01402 RHH_1: Ribbon-helix-h 27.4 1.4E+02 0.003 17.5 4.1 21 220-240 9-29 (39)
80 cd00959 DeoC 2-deoxyribose-5-p 27.3 3.7E+02 0.0081 22.6 7.8 70 36-119 129-202 (203)
81 PRK13361 molybdenum cofactor b 27.0 4.9E+02 0.011 23.8 12.6 130 35-185 45-196 (329)
82 COG2069 CdhD CO dehydrogenase/ 27.0 2.6E+02 0.0056 25.6 6.7 68 113-184 159-261 (403)
83 TIGR02026 BchE magnesium-proto 26.9 6.1E+02 0.013 24.8 10.5 77 101-180 222-303 (497)
84 COG4464 CapC Capsular polysacc 26.9 1.7E+02 0.0036 25.5 5.3 30 35-64 17-46 (254)
85 COG0635 HemN Coproporphyrinoge 26.8 2.4E+02 0.0052 27.0 7.1 78 17-130 148-230 (416)
86 PRK13210 putative L-xylulose 5 26.6 4.4E+02 0.0095 23.1 10.8 102 112-234 23-147 (284)
87 PF00388 PI-PLC-X: Phosphatidy 26.2 46 0.00099 26.5 1.9 20 42-61 30-49 (146)
88 TIGR02766 crypt_chrom_pln cryp 25.8 1.2E+02 0.0026 29.5 5.0 64 107-180 53-122 (475)
89 PRK05826 pyruvate kinase; Prov 25.5 6.4E+02 0.014 24.6 12.6 72 40-132 175-248 (465)
90 PRK06354 pyruvate kinase; Prov 25.4 7.1E+02 0.015 25.1 12.8 89 36-146 177-269 (590)
91 COG3623 SgaU Putative L-xylulo 25.3 1.4E+02 0.003 26.3 4.6 77 12-89 65-156 (287)
92 PRK01313 rnpA ribonuclease P; 25.1 3.4E+02 0.0074 21.3 7.0 62 78-148 47-113 (129)
93 COG3215 PilZ Tfp pilus assembl 25.0 2.7E+02 0.0058 21.1 5.4 78 36-115 18-105 (117)
94 PF07287 DUF1446: Protein of u 25.0 4E+02 0.0087 25.1 8.0 80 119-235 21-100 (362)
95 KOG2733 Uncharacterized membra 24.5 1.2E+02 0.0027 28.4 4.4 53 40-94 98-150 (423)
96 PF00356 LacI: Bacterial regul 24.2 1.4E+02 0.003 18.8 3.4 42 225-272 2-43 (46)
97 CHL00200 trpA tryptophan synth 24.2 5.1E+02 0.011 23.0 11.8 27 36-62 27-53 (263)
98 PRK09413 IS2 repressor TnpA; R 23.9 85 0.0018 24.2 2.9 40 36-77 14-53 (121)
99 PRK01045 ispH 4-hydroxy-3-meth 23.8 5.6E+02 0.012 23.3 12.8 43 224-267 227-275 (298)
100 CHL00162 thiG thiamin biosynth 23.6 5.3E+02 0.012 23.0 15.7 154 2-185 2-167 (267)
101 COG2102 Predicted ATPases of P 23.5 4.7E+02 0.01 22.7 7.5 103 107-237 75-177 (223)
102 KOG0173 20S proteasome, regula 23.2 77 0.0017 27.9 2.7 42 10-52 153-200 (271)
103 COG1448 TyrB Aspartate/tyrosin 23.1 5E+02 0.011 24.6 8.1 121 65-185 105-246 (396)
104 PF10668 Phage_terminase: Phag 23.0 1.6E+02 0.0035 19.9 3.7 17 224-240 24-40 (60)
105 COG4130 Predicted sugar epimer 22.9 2.8E+02 0.006 24.2 5.9 105 107-234 19-136 (272)
106 PF11372 DUF3173: Domain of un 22.7 84 0.0018 21.2 2.2 22 36-57 15-40 (59)
107 PRK13111 trpA tryptophan synth 22.7 5.4E+02 0.012 22.8 12.8 27 36-62 24-50 (258)
108 PRK05788 cobalamin biosynthesi 22.5 2.2E+02 0.0049 26.1 5.8 59 97-182 201-259 (315)
109 KOG4175 Tryptophan synthase al 22.3 3E+02 0.0064 23.7 5.9 26 150-175 99-124 (268)
110 PF01791 DeoC: DeoC/LacD famil 22.3 4.8E+02 0.01 22.5 7.7 94 39-147 20-118 (236)
111 PF13380 CoA_binding_2: CoA bi 22.2 2E+02 0.0044 21.9 4.7 55 119-180 53-108 (116)
112 PRK10558 alpha-dehydro-beta-de 22.2 2.5E+02 0.0055 24.8 6.0 18 165-182 60-77 (256)
113 KOG3206 Alpha-tubulin folding 21.8 45 0.00098 28.5 1.0 14 50-63 199-212 (234)
114 PRK01903 rnpA ribonuclease P; 21.8 4.1E+02 0.0088 21.0 7.0 47 102-148 66-128 (133)
115 COG4573 GatZ Predicted tagatos 21.7 96 0.0021 28.7 3.1 51 12-62 77-133 (426)
116 TIGR00216 ispH_lytB (E)-4-hydr 21.6 6E+02 0.013 22.9 12.3 184 41-267 78-273 (280)
117 PF08418 Pol_alpha_B_N: DNA po 21.6 91 0.002 27.4 3.0 49 219-268 9-60 (253)
118 smart00148 PLCXc Phospholipase 21.5 78 0.0017 25.0 2.3 18 41-58 31-48 (135)
119 smart00657 RPOL4c DNA-directed 21.4 3.4E+02 0.0073 20.8 5.8 60 220-289 55-114 (118)
120 KOG1939 Oxoprolinase [Amino ac 21.2 1.1E+02 0.0024 31.9 3.6 56 35-92 165-224 (1247)
121 CHL00130 rbcS ribulose-1,5-bis 21.1 1.3E+02 0.0028 23.9 3.3 80 19-124 2-82 (138)
122 PF08671 SinI: Anti-repressor 21.0 1.1E+02 0.0025 17.4 2.3 16 38-53 3-18 (30)
123 TIGR03070 couple_hipB transcri 21.0 1.1E+02 0.0025 19.2 2.7 21 224-244 6-26 (58)
124 PF00290 Trp_syntA: Tryptophan 20.7 1.9E+02 0.0042 25.7 4.8 40 137-176 72-117 (259)
125 COG1879 RbsB ABC-type sugar tr 20.5 4.8E+02 0.01 23.3 7.7 77 103-183 48-125 (322)
126 cd04740 DHOD_1B_like Dihydroor 20.4 3.2E+02 0.0069 24.5 6.4 76 36-125 100-186 (296)
127 PF14606 Lipase_GDSL_3: GDSL-l 20.3 3.3E+02 0.0071 22.8 5.9 94 37-131 48-146 (178)
128 COG2006 Uncharacterized conser 20.2 5.9E+02 0.013 23.0 7.6 80 101-181 11-112 (293)
129 cd02810 DHOD_DHPD_FMN Dihydroo 20.2 4.2E+02 0.009 23.5 7.1 81 36-129 109-197 (289)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-62 Score=447.14 Aligned_cols=279 Identities=42% Similarity=0.648 Sum_probs=249.1
Q ss_pred CceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCC-CCCEE
Q 021097 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVE 83 (317)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~-R~~~~ 83 (317)
|++++||++|++||+||||||.+|..+ ...+.+++.++|++|+|+||||||||++||.|.||++||+||+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~-~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDT-DDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCC-CchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 889999999999999999999998642 2224556788999999999999999999999999999999999954 89999
Q ss_pred EEeccCcccCC-CCC-CCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH------------
Q 021097 84 LATKFGISFAD-GKR-EIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE------------ 149 (317)
Q Consensus 84 I~tK~~~~~~~-~~~-~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~------------ 149 (317)
|+||++....+ +.. ..+.++++|+++|+.||+||||||||||++||||+..+.++++++|.+|+++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999977642 322 2578999999999999999999999999999999999999999999999999
Q ss_pred ---------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcc-cccchh
Q 021097 150 ---------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYL-PRFQAE 213 (317)
Q Consensus 150 ---------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~-p~~~~~ 213 (317)
++|.+||+++++.+.+++++|+++||++++|+||++|+|+ +++... +.+.+... +.+..+
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~~~~~~ 235 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELPRFQRE 235 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccccchhh
Confidence 6799999999887778999999999999999999999999 875443 22333222 667777
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 021097 214 NLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 288 (317)
Q Consensus 214 ~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~ 288 (317)
..+....++..++.+|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++..|++++++.|++....
T Consensus 236 ~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 236 LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=4.3e-60 Score=424.09 Aligned_cols=289 Identities=44% Similarity=0.708 Sum_probs=255.0
Q ss_pred cCceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCC
Q 021097 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRER 81 (317)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~ 81 (317)
.|.|+.+|++|++||+||||||.+.. |+...+++++.+++++|+|+|+||||||++||.|.||+++|++|++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 38899999999999999999975533 4444789999999999999999999999999999999999999998 47999
Q ss_pred EEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH------------
Q 021097 82 VELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE------------ 149 (317)
Q Consensus 82 ~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~------------ 149 (317)
++|+||++... .+......++..+...++.||+|||++||||||+||+|+..|.++++++|.+++++
T Consensus 90 vviaTK~~~~~-~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDY-GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccC-CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCC
Confidence 99999998765 23334667889999999999999999999999999999999999999999999999
Q ss_pred ----------------Hhcccccccccch-hhhHHHHHHHhCCcEEeccccccccCCCCC-CCCCCCCchhhh----hcc
Q 021097 150 ----------------AVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYSPLGRGFFSSGP-KLVESFSKEDFR----QYL 207 (317)
Q Consensus 150 ----------------~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~-~~~~~~~~~~~~----~~~ 207 (317)
++|++||+++++. +.++++.|++.||++++||||++|+|+ |+ ...++.+.++.+ ...
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt-gk~~~~e~~~~~~~~~~~~~~~ 247 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT-GKYKLGEDSRNGDKRFQFLGLS 247 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec-cCcccccccccccccccccccc
Confidence 7899999999984 457999999999999999999999999 77 444555544432 122
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 021097 208 PRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIAS 287 (317)
Q Consensus 208 p~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~ 287 (317)
|++..+ ..++.+++++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|+...|+++++.+|++..+
T Consensus 248 ~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~ 325 (336)
T KOG1575|consen 248 PQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIID 325 (336)
T ss_pred cccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhc
Confidence 333332 667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCcc
Q 021097 288 ADAVKGDRYV 297 (317)
Q Consensus 288 ~~~~~~~~~~ 297 (317)
+....+.+|.
T Consensus 326 ~~~~~~~~~~ 335 (336)
T KOG1575|consen 326 KILGFGPRSI 335 (336)
T ss_pred cccCcCCCCC
Confidence 9888887664
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.3e-55 Score=409.01 Aligned_cols=279 Identities=26% Similarity=0.473 Sum_probs=231.6
Q ss_pred CceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCC--CcHHHHHHHHhccC---CC
Q 021097 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGP--HTNEILLGKALKGG---MR 79 (317)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~--G~sE~~lG~al~~~---~R 79 (317)
|+|++||+||++||+||||||+. +|...+.+++.++|++|+++|||+||||+.||. |.||+.+|++|++. .|
T Consensus 13 m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~R 89 (346)
T PRK09912 13 MQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYR 89 (346)
T ss_pred cceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCC
Confidence 89999999999999999999972 233335677899999999999999999999995 89999999999863 59
Q ss_pred CCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH----------
Q 021097 80 ERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE---------- 149 (317)
Q Consensus 80 ~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~---------- 149 (317)
++++|+||++....++....+.+++.+++++++||+||||||||+|+||+|++..++++++++|++|+++
T Consensus 90 d~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn 169 (346)
T PRK09912 90 DELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISS 169 (346)
T ss_pred CeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 9999999997532112112346799999999999999999999999999999888899999999999999
Q ss_pred ---------------------Hhcccccccccchh-hhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhh--
Q 021097 150 ---------------------AVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQ-- 205 (317)
Q Consensus 150 ---------------------~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~-- 205 (317)
++|++||++++..+ .+++++|+++||+|++|+||++|+|+ +++... .|.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~~~~~~~~ 247 (346)
T PRK09912 170 YSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQDSRMHRE 247 (346)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCCCcccccc
Confidence 57999999998654 47999999999999999999999999 653221 12110000
Q ss_pred --cccccchhhH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcC-CCCCHHHHHH
Q 021097 206 --YLPRFQAENL-EHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALS-VKLTLEEMVE 281 (317)
Q Consensus 206 --~~p~~~~~~~-~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~-~~Lt~ee~~~ 281 (317)
..+.+.+..+ +..++.++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++. ++|++++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~ 327 (346)
T PRK09912 248 GNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQ 327 (346)
T ss_pred ccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0011222211 34567778999999999999999999999999999999999999999999999984 7999999999
Q ss_pred HHhhhcc
Q 021097 282 LESIASA 288 (317)
Q Consensus 282 l~~~~~~ 288 (317)
|+++.++
T Consensus 328 l~~~~~~ 334 (346)
T PRK09912 328 IDQHIAD 334 (346)
T ss_pred HHHhhCc
Confidence 9998765
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.9e-55 Score=402.58 Aligned_cols=272 Identities=27% Similarity=0.426 Sum_probs=227.6
Q ss_pred eeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccC--CCCCEEE
Q 021097 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG--MRERVEL 84 (317)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~--~R~~~~I 84 (317)
||+||+||++||+||||||+++ |...+.+++.++|++|+++|||+||||++||.|.||++||++|+.. +|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 5789999999999999999742 3334678899999999999999999999999999999999999852 5999999
Q ss_pred EeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH---------------
Q 021097 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--------------- 149 (317)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~--------------- 149 (317)
+||++.... .....+.+++.++++|++||+||||||||+|++|||++..++++++++|++|+++
T Consensus 78 aTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~ 156 (317)
T TIGR01293 78 TTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSME 156 (317)
T ss_pred EeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHH
Confidence 999864211 0111345899999999999999999999999999999888899999999999999
Q ss_pred -----------------Hhcccccccccch-hhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhccc---
Q 021097 150 -----------------AVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLP--- 208 (317)
Q Consensus 150 -----------------~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p--- 208 (317)
++|++||+++++. +..++++|+++||++++|+||++|+|+ +++... .+.+. +...+
T Consensus 157 l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 157 IMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCCcc-cccccccc
Confidence 3589999999874 668999999999999999999999999 764322 22221 11001
Q ss_pred ccc----hhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCC--CCCHHHHHHH
Q 021097 209 RFQ----AENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSV--KLTLEEMVEL 282 (317)
Q Consensus 209 ~~~----~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~--~Lt~ee~~~l 282 (317)
.+. .+......+.++.++++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++. +||+++++.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 011 1222345677889999999999999999999999999999999999999999999999987 9999999999
Q ss_pred Hhh
Q 021097 283 ESI 285 (317)
Q Consensus 283 ~~~ 285 (317)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.1e-55 Score=407.00 Aligned_cols=278 Identities=29% Similarity=0.402 Sum_probs=230.3
Q ss_pred CceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcC-------CCcHHHHHHHHhcc-
Q 021097 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYG-------PHTNEILLGKALKG- 76 (317)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-------~G~sE~~lG~al~~- 76 (317)
|+|++||+||++||+||||||++|. ..+.+++.++|+.|+++|||+||||+.|| .|.||+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 23678899999999999999999999998 48999999999985
Q ss_pred CCCCCEEEEeccCcccCC-CC---CCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCC-----------------CCC
Q 021097 77 GMRERVELATKFGISFAD-GK---REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----------------RVP 135 (317)
Q Consensus 77 ~~R~~~~I~tK~~~~~~~-~~---~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~-----------------~~~ 135 (317)
..|++++|+||++..... +. ...+.+++.++++|++||+||||||||||+||||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 369999999998632110 00 012468999999999999999999999999999965 246
Q ss_pred HHHHHHHHHHHHHH--------------------------------HhcccccccccchhhhHHHHHHHhCCcEEecccc
Q 021097 136 IEVTIGELKKLVEE--------------------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPL 183 (317)
Q Consensus 136 ~~~~~~al~~l~~~--------------------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl 183 (317)
++++|++|++|+++ ++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 78999999999999 3588899999877678999999999999999999
Q ss_pred ccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHH
Q 021097 184 GRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENC 263 (317)
Q Consensus 184 ~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l 263 (317)
++|+|+ ++......+.+......+.|.........+.++.++++|+++++|++|+||+|++++|.|+++|+|+++++||
T Consensus 237 ~~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 237 AFGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred cCeecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 999999 6643222222111000111211112345677889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHhhhc
Q 021097 264 NQNIKALSVKLTLEEMVELESIAS 287 (317)
Q Consensus 264 ~en~~a~~~~Lt~ee~~~l~~~~~ 287 (317)
++|+++++++|++++++.|+++.+
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.3e-54 Score=377.24 Aligned_cols=232 Identities=35% Similarity=0.516 Sum_probs=208.2
Q ss_pred cCceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCC
Q 021097 4 AVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRER 81 (317)
Q Consensus 4 ~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~ 81 (317)
||.+.+| ++|.+||.||||||+++. .+...+.|.+|++.|+|+||||.+|| ||+.+|+++++ .+|++
T Consensus 2 ~~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 2 MKTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREE 70 (280)
T ss_pred CCceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHH
Confidence 5667788 577889999999999852 23388999999999999999999999 99999999998 48999
Q ss_pred EEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHH----------
Q 021097 82 VELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEE---------- 149 (317)
Q Consensus 82 ~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~--~~~~~~~~al~~l~~~---------- 149 (317)
+||+||++.. +.+++.+.+++++||+|||+||||||+||||.+. ..+.++|++|++++++
T Consensus 71 lFittKvw~~--------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 71 LFITTKVWPS--------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred eEEEeecCCc--------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999976 4577889999999999999999999999999763 2368999999999999
Q ss_pred ------------------HhcccccccccchhhhHHHHHHHhCCcEEecccccccc-CCCCCCCCCCCCchhhhhccccc
Q 021097 150 ------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGF-FSSGPKLVESFSKEDFRQYLPRF 210 (317)
Q Consensus 150 ------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~-l~~~~~~~~~~~~~~~~~~~p~~ 210 (317)
++|++||++.++.+ ++++|+++||.++|||||++|. +. .+|
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~----------------~~~-- 202 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLL----------------DNP-- 202 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCcccccccc----------------cCh--
Confidence 89999999999654 9999999999999999999653 33 022
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhccC
Q 021097 211 QAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASAD 289 (317)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~~ 289 (317)
.+..+|++||.|++|++|+|+++++. ++||.+++++|++||++++++.||+|||+.|+++....
T Consensus 203 -------------~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 203 -------------VLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred -------------HHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 89999999999999999999999995 99999999999999999999999999999999998764
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5.3e-53 Score=387.20 Aligned_cols=261 Identities=29% Similarity=0.410 Sum_probs=221.5
Q ss_pred eeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCCEEE
Q 021097 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVEL 84 (317)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I 84 (317)
||+||+||++||+||||||++|..|+. .+.+++.++|++|+++|||+||||+.||.|.||+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999866654 377889999999999999999999999999999999999987 36999999
Q ss_pred EeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHH------------
Q 021097 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR---VPIEVTIGELKKLVEE------------ 149 (317)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~---~~~~~~~~al~~l~~~------------ 149 (317)
+||++.... ..+.+++.+++++++||+|||+||||+|+||+|+.. .+++++|++|++|+++
T Consensus 80 ~TK~~~~~~----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 80 STKCGRYGE----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred EeccccCCC----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 999984311 124689999999999999999999999999999742 3467899999999999
Q ss_pred -------------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhccccc
Q 021097 150 -------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRF 210 (317)
Q Consensus 150 -------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~ 210 (317)
.+|+.||+.++.. .+++++|+++||++++|+||++|+|+ ++..+. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~~-------------~ 220 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPPE-------------W 220 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCCC-------------C
Confidence 1356677766543 48999999999999999999999998 542111 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcC----CCCCHHHHHHHHhhh
Q 021097 211 QAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALS----VKLTLEEMVELESIA 286 (317)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~----~~Lt~ee~~~l~~~~ 286 (317)
.. ..+...+.++.++++|+++++|++|+||+|++++|.|++||+|+++++||++|++++. .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 0123456778899999999999999999999999999999999999999999999976 379999999999987
Q ss_pred cc
Q 021097 287 SA 288 (317)
Q Consensus 287 ~~ 288 (317)
+.
T Consensus 300 ~~ 301 (314)
T PLN02587 300 AP 301 (314)
T ss_pred cc
Confidence 63
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-50 Score=367.05 Aligned_cols=254 Identities=41% Similarity=0.652 Sum_probs=223.0
Q ss_pred eeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCC-CCCEEEE
Q 021097 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGM-RERVELA 85 (317)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~-R~~~~I~ 85 (317)
+++||+||++||+||||||+++..+ .+.+++.+++++|++.|||+||||+.||.|.||+.+|++|++.+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 36788999999999999999999999999999999999999965 9999999
Q ss_pred eccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHH---------------
Q 021097 86 TKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEE--------------- 149 (317)
Q Consensus 86 tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~-~~~~~~al~~l~~~--------------- 149 (317)
||++...... .+.+++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++
T Consensus 78 tK~~~~~~~~---~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 154 (285)
T cd06660 78 TKVGPRPGDG---RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQ 154 (285)
T ss_pred eeecCCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHH
Confidence 9998653211 3468999999999999999999999999999988766 78999999999999
Q ss_pred -------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHH
Q 021097 150 -------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLE 216 (317)
Q Consensus 150 -------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 216 (317)
++|++||++++..+.+++++|+++||+|++|+||++|.++ ++......+ + .
T Consensus 155 l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~-~~~~~~~~~--------~---~---- 218 (285)
T cd06660 155 LEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLT-GKYLPGAPP--------P---E---- 218 (285)
T ss_pred HHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceec-CCCCCCCCC--------C---h----
Confidence 7899999999987668999999999999999999999887 432111100 0 0
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHh
Q 021097 217 HNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELES 284 (317)
Q Consensus 217 ~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~ 284 (317)
......+..++.+++++++|+|++|++++|.+++||+|+++++||++|++++..+|++++++.|++
T Consensus 219 --~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 --GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred --hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 113457899999999999999999999999999999999999999999999999999999999976
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-49 Score=360.70 Aligned_cols=253 Identities=28% Similarity=0.455 Sum_probs=212.1
Q ss_pred ccCceeeCCCCCcccCcceecccccCc--CCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCC
Q 021097 3 GAVKRIKLGSQGLEVSAQGLGCMGMSA--FYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRE 80 (317)
Q Consensus 3 ~~m~~~~lg~tg~~vs~lglGt~~~g~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~ 80 (317)
-+|...++.-+|++||+||||||++|+ .||...+.+++.++|++|+++|||+||||+.||+|.+|+++|++++. .|+
T Consensus 3 ~~~~~~~~~l~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~ 81 (290)
T PRK10376 3 TIMSSGTFTLGGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPD 81 (290)
T ss_pred ccccCCceecCCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCC
Confidence 345433333349999999999999975 36655567889999999999999999999999999999999999976 699
Q ss_pred CEEEEeccCcccCC-CCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHH-----
Q 021097 81 RVELATKFGISFAD-GKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEE----- 149 (317)
Q Consensus 81 ~~~I~tK~~~~~~~-~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~-----~~~~~~~~~al~~l~~~----- 149 (317)
+++|+||++....+ +....+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~ 161 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH 161 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE
Confidence 99999998753321 11223568999999999999999999999999887421 23478899999999999
Q ss_pred ---------------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhccc
Q 021097 150 ---------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLP 208 (317)
Q Consensus 150 ---------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p 208 (317)
++|++||++++. ..+++++|+++||++++|+||+++...
T Consensus 162 iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~------------------- 221 (290)
T PRK10376 162 IGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPL------------------- 221 (290)
T ss_pred EEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChh-------------------
Confidence 679999999876 357999999999999999999743100
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 021097 209 RFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 288 (317)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~ 288 (317)
..+.+.++|+++++|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.+.
T Consensus 222 ------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 222 ------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred ------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 02378899999999999999999999876778999999999999999999999999999999988653
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=8.2e-50 Score=361.11 Aligned_cols=250 Identities=33% Similarity=0.509 Sum_probs=210.4
Q ss_pred cceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCCEEEEeccCcccCCCC
Q 021097 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFADGK 96 (317)
Q Consensus 19 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~ 96 (317)
+||||||++|.. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|+. .+|++++|+||+.. ...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~---~~~ 74 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYG---DGK 74 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEES---SSS
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccc---ccc
Confidence 589999998642 4588999999999999999999999999999999999999988 68999999999911 122
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHH--------------------------
Q 021097 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVP-IEVTIGELKKLVEE-------------------------- 149 (317)
Q Consensus 97 ~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~-~~~~~~al~~l~~~-------------------------- 149 (317)
.....+++.+++++++||++||+||||+|+||+|+.... ..++|++|++|+++
T Consensus 75 ~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 154 (283)
T PF00248_consen 75 PEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIP 154 (283)
T ss_dssp TGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-
T ss_pred ccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 234679999999999999999999999999999999888 89999999999999
Q ss_pred --HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCC-CCCchhhhhcccccchhhHHHHHHHHHHHH
Q 021097 150 --AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE-SFSKEDFRQYLPRFQAENLEHNKKLFERVN 226 (317)
Q Consensus 150 --~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~ 226 (317)
++|++||++++....+++++|+++||++++|+||++|+|+ ++.... ..+..... ...++..+.+.
T Consensus 155 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~-~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 155 PDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLT-GKYKSPPPPPSRASL-----------RDAQELADALR 222 (283)
T ss_dssp ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGG-TTTTTTTTSTTTSGS-----------STHGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccCccc-cccccCCCccccccc-----------chhhhhhhhhh
Confidence 7899999997777889999999999999999999999998 542221 11111100 00345566899
Q ss_pred HHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 021097 227 EIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIA 286 (317)
Q Consensus 227 ~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~ 286 (317)
++++++++|++|+||+|+++++.+.+||+|+++++||++|+++++++||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.9e-49 Score=345.02 Aligned_cols=234 Identities=32% Similarity=0.471 Sum_probs=206.6
Q ss_pred eeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc------CCCC
Q 021097 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG------GMRE 80 (317)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~------~~R~ 80 (317)
+..| ++|.+||.||||||+. +..++.+.++.|++.|+||||||..|| +|+.+|++|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 5678 8999999999999984 567799999999999999999999999 89999999985 3899
Q ss_pred CEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC----------------CCHHHHHHHHH
Q 021097 81 RVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----------------VPIEVTIGELK 144 (317)
Q Consensus 81 ~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~----------------~~~~~~~~al~ 144 (317)
++||+||+|.. ...++.++.++++||++||+||+|||++|||-.. .+..++|++|+
T Consensus 74 diFiTSKlw~~--------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE 145 (300)
T KOG1577|consen 74 DIFITSKLWPT--------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAME 145 (300)
T ss_pred hheeeeccCcc--------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHH
Confidence 99999999976 3478899999999999999999999999999543 34678999999
Q ss_pred HHHHH----------------------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCC
Q 021097 145 KLVEE----------------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 196 (317)
Q Consensus 145 ~l~~~----------------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~ 196 (317)
++++. ++|++++++.+ +.+++++|+++||.|.|||||+.+--. .
T Consensus 146 ~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~----~-- 217 (300)
T KOG1577|consen 146 KLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRG----S-- 217 (300)
T ss_pred HHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCc----c--
Confidence 99999 89999999888 457999999999999999999976320 0
Q ss_pred CCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCH
Q 021097 197 SFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTL 276 (317)
Q Consensus 197 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ 276 (317)
++. .+ +.+.++|++|+.|++|++|||+++++. +|||.++|+++|+||++++++.||+
T Consensus 218 ~ll------~~---------------~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 DLL------ED---------------PVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred ccc------cC---------------HHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 000 01 289999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHHhhhccCCc
Q 021097 277 EEMVELESIASADAV 291 (317)
Q Consensus 277 ee~~~l~~~~~~~~~ 291 (317)
||++.|+......+.
T Consensus 275 ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 275 EDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHhhcccccee
Confidence 999999988766543
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.5e-48 Score=348.23 Aligned_cols=220 Identities=27% Similarity=0.408 Sum_probs=196.7
Q ss_pred cccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCCEEEEeccCccc
Q 021097 15 LEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISF 92 (317)
Q Consensus 15 ~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I~tK~~~~~ 92 (317)
++||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999863 46799999999999999999999999 79999999985 369999999998642
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHH---------------------
Q 021097 93 ADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKLVEE--------------------- 149 (317)
Q Consensus 93 ~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~--~~~~~~~~al~~l~~~--------------------- 149 (317)
..+++.+++++++||+|||+||||+|+||+|++. .+.+++|++|++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3578999999999999999999999999999763 5678999999999999
Q ss_pred --------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHH
Q 021097 150 --------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKL 221 (317)
Q Consensus 150 --------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 221 (317)
++|++||++++. .+++++|+++||+|++|+||++|.+. . .
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~-~---------------~-------------- 189 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL-K---------------D-------------- 189 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc-C---------------C--------------
Confidence 579999999874 58999999999999999999998654 1 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 021097 222 FERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 288 (317)
Q Consensus 222 ~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~ 288 (317)
..+.++|+++++|++|+||+|+++++. +||+|+++++||++|+++++++||+++++.|+++.++
T Consensus 190 -~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 -PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 168899999999999999999999975 7999999999999999999999999999999999764
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.2e-48 Score=349.27 Aligned_cols=244 Identities=20% Similarity=0.268 Sum_probs=204.3
Q ss_pred CcccCcceecccccCcC-------CCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEe
Q 021097 14 GLEVSAQGLGCMGMSAF-------YGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELAT 86 (317)
Q Consensus 14 g~~vs~lglGt~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~t 86 (317)
+++||+||||||++|.. |+. .+.+++.++|++|++.||||||||+.||. ||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999853 343 48899999999999999999999999975 999999999863346789999
Q ss_pred ccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHH---------------
Q 021097 87 KFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPI-EVTIGELKKLVEE--------------- 149 (317)
Q Consensus 87 K~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~-~~~-~~~~~al~~l~~~--------------- 149 (317)
|.. +.+++.+++++++||+||||||||+|+||+|++. .+. +++|++|++|+++
T Consensus 79 k~~----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~ 148 (292)
T PRK14863 79 VRA----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDD 148 (292)
T ss_pred ccc----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHH
Confidence 842 2368899999999999999999999999999763 333 5789999999999
Q ss_pred -----------Hhcccccccccchh-hhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHH
Q 021097 150 -----------AVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEH 217 (317)
Q Consensus 150 -----------~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 217 (317)
++|++||+++++.+ .+++++|+++||++++|+||++|+|+ +.. ...+ . .+..
T Consensus 149 ~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~~--------~-----~~~~ 212 (292)
T PRK14863 149 PVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRVP--------A-----QLKG 212 (292)
T ss_pred HHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccCc--------c-----chhh
Confidence 78999999998754 46999999999999999999999987 321 1110 0 1112
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 021097 218 NKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIA 286 (317)
Q Consensus 218 ~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~ 286 (317)
....+..+.+++.++++|++|+||+|++++|.|+++|+|+++++||++|+++.+.+++++.+++|..-.
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 234566788888889999999999999999999999999999999999999999899998887776544
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-46 Score=338.88 Aligned_cols=228 Identities=28% Similarity=0.393 Sum_probs=199.9
Q ss_pred eeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccC--CCCCEEE
Q 021097 7 RIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG--MRERVEL 84 (317)
Q Consensus 7 ~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~--~R~~~~I 84 (317)
+..| ++|+.||+||||||++ +.+++.++|++|++.|||+||||+.|| +|+.+|++|+.. +|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 3557 7999999999999986 457799999999999999999999998 799999999863 5899999
Q ss_pred EeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHH--------------
Q 021097 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEE-------------- 149 (317)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~-~~~~~~~al~~l~~~-------------- 149 (317)
+||++.. +++.+++++++||+|||+||||+|+||+|++.. ++.++|++|++|+++
T Consensus 74 ~tK~~~~----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 74 TTKLWND----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEEecCc----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 9998632 567899999999999999999999999998753 478999999999999
Q ss_pred --------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhH
Q 021097 150 --------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENL 215 (317)
Q Consensus 150 --------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~ 215 (317)
++|++|+++.+ ..+++++|+++||++++|+||++|... . +.
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~~~--~-----------------~~---- 198 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGGKG--V-----------------FD---- 198 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCCcc--c-----------------cc----
Confidence 57899998887 357999999999999999999976311 0 00
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhccC
Q 021097 216 EHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASAD 289 (317)
Q Consensus 216 ~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~~ 289 (317)
.+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++|+++++++|+++....
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1268899999999999999999999975 68999999999999999999999999999999997643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.2e-46 Score=313.92 Aligned_cols=258 Identities=30% Similarity=0.451 Sum_probs=229.7
Q ss_pred CceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc--CCCCCE
Q 021097 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG--GMRERV 82 (317)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~ 82 (317)
|++..+|+.|+++|+|.+|+|++.. |+ .+..+...++++|+|.|||+||.|++||++.+|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999964 33 256889999999999999999999999999999999999986 479999
Q ss_pred EEEeccCcccCCC----CCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH---------
Q 021097 83 ELATKFGISFADG----KREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--------- 149 (317)
Q Consensus 83 ~I~tK~~~~~~~~----~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~--------- 149 (317)
.|.||++...... -...+.+.++|..++|+||++|+|||+|+++||+||+-.+.+++.+|+..|.+.
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765421 234678999999999999999999999999999999998999999999999998
Q ss_pred -------------------Hhcccccccccc-hhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccc
Q 021097 150 -------------------AVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPR 209 (317)
Q Consensus 150 -------------------~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~ 209 (317)
+||++.|+++.. ..++.+++|+.+.|.++|||||++|-+..|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 899999999876 3478999999999999999999998665231
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 021097 210 FQAENLEHNKKLFERVNEIATRKG-CTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 288 (317)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~a~~~~-~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~ 288 (317)
+..++..+.+..+|.++| +|..+++++|++.+|.-..+|+|+.++++|++.+++++..||.++|-+|..+...
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 112455668999999999 7999999999999999889999999999999999999999999999999887643
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.3e-45 Score=311.72 Aligned_cols=284 Identities=23% Similarity=0.277 Sum_probs=227.6
Q ss_pred ccCceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCE
Q 021097 3 GAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERV 82 (317)
Q Consensus 3 ~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~ 82 (317)
.||+||.+|+||++||+||||+..++..||.. +.++....|..|+..|||+|||++.||.++||+.+|.++++.||+.+
T Consensus 20 rrmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aY 98 (342)
T KOG1576|consen 20 RRMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAY 98 (342)
T ss_pred HHHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhe
Confidence 46999999999999999999999999888864 66667766666999999999999999999999999999999999999
Q ss_pred EEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHH---------
Q 021097 83 ELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR----VPIEVTIGELKKLVEE--------- 149 (317)
Q Consensus 83 ~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~----~~~~~~~~al~~l~~~--------- 149 (317)
||+||++....+...-.+++++.++++|++||+||++||+|++++|..+.. ..+.|++.+|++++++
T Consensus 99 yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 99 YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 999999976544334468899999999999999999999999999988654 2367999999999999
Q ss_pred ---------------------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhccc
Q 021097 150 ---------------------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLP 208 (317)
Q Consensus 150 ---------------------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p 208 (317)
..-.+|++.+.. .-..++..+.+|++|+.-++++.|+|+ ...++.
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~gp~~------------ 244 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQGPPP------------ 244 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCCCCC------------
Confidence 222455554442 235778888999999999999999998 332111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhcc
Q 021097 209 RFQAENLEHNKKLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASA 288 (317)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~ 288 (317)
| ++--++..+...+-.++|++.|+..+.+|+.|+++.++++++++|+++.++|+.|+++....||..+-++.....++
T Consensus 245 -w-HPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~ 322 (342)
T KOG1576|consen 245 -W-HPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILRE 322 (342)
T ss_pred -C-CCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence 1 11223456667788899999999999999999999999999999999999999999976667887444444444332
Q ss_pred CCccCCCc-cccccccccCCCC
Q 021097 289 DAVKGDRY-VGKASTYEDSETP 309 (317)
Q Consensus 289 ~~~~~~~~-~~~~~~~~~~~~~ 309 (317)
. + +.+..+|+++...
T Consensus 323 ~------~~~~kn~~W~g~~~~ 338 (342)
T KOG1576|consen 323 I------LKETKNEEWEGGILH 338 (342)
T ss_pred H------hhhhccCCCCCCCCc
Confidence 1 1 1244566665543
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.6e-45 Score=323.05 Aligned_cols=247 Identities=29% Similarity=0.368 Sum_probs=215.7
Q ss_pred CceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEE
Q 021097 5 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVEL 84 (317)
Q Consensus 5 m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I 84 (317)
|.||++|+||.++|.||||+|++-..++...+.+.+.++|++|+++||||||||..|..|.||..+|+||++..|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 89999999999999999999999766666678999999999999999999999999988889999999999989999999
Q ss_pred EeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHH----------
Q 021097 85 ATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIE-----VTIGELKKLVEE---------- 149 (317)
Q Consensus 85 ~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~-----~~~~al~~l~~~---------- 149 (317)
+||+.... --+++.+++-++++|++||+||+|+|+||..+. ..++ ..++.+++++++
T Consensus 81 aTKlp~~~-------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSf 152 (391)
T COG1453 81 ATKLPSWP-------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSF 152 (391)
T ss_pred EeecCCcc-------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecC
Confidence 99998432 237899999999999999999999999999987 3333 246777777777
Q ss_pred -----------------Hhcccccccccchh--hhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhccccc
Q 021097 150 -----------------AVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRF 210 (317)
Q Consensus 150 -----------------~~q~~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~ 210 (317)
++|++||.+++... .+.+++|.++|++|+.++|+.+|-|. . ++ |
T Consensus 153 Hgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~-~-----~v---------P-- 215 (391)
T COG1453 153 HGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL-Y-----NV---------P-- 215 (391)
T ss_pred CCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc-c-----CC---------C--
Confidence 78999999998644 38999999999999999999999776 1 11 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCC--C-CCHHHHHHHHhh
Q 021097 211 QAENLEHNKKLFERVNEIATRKG--CTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSV--K-LTLEEMVELESI 285 (317)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~a~~~~--~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~--~-Lt~ee~~~l~~~ 285 (317)
+++++++++.+ .||+.+|+||++++|.|++|++|+++++||+||++.++. | ||++|++.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 26778887765 689999999999999999999999999999999999864 4 999999988888
Q ss_pred hcc
Q 021097 286 ASA 288 (317)
Q Consensus 286 ~~~ 288 (317)
.+.
T Consensus 284 ~~~ 286 (391)
T COG1453 284 EEI 286 (391)
T ss_pred HHH
Confidence 653
No 18
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=82.36 E-value=25 Score=33.02 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=87.2
Q ss_pred ccCcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCC----cHHHHHHHHhcc-----CCCCCEEEEe
Q 021097 16 EVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPH----TNEILLGKALKG-----GMRERVELAT 86 (317)
Q Consensus 16 ~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G----~sE~~lG~al~~-----~~R~~~~I~t 86 (317)
.|=+++.|-=+. |+.-.+..++.+.+..|++.| ....|+.. .+-+.+.+.+.+ ...+++||++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 444556554332 233335577888889999887 34567653 466778888754 2678999988
Q ss_pred ccCcccC--------CCC----CCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH--Hhc
Q 021097 87 KFGISFA--------DGK----REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--AVQ 152 (317)
Q Consensus 87 K~~~~~~--------~~~----~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~--~~q 152 (317)
-+...-. ++. .++.+.. -.....-..|.+.|.||+ ++..++--+..++.|.++ +..
T Consensus 134 GC~qAIe~~i~~LA~p~aNILlPrPGfp~----Y~~~a~~~~lEVR~ydlL------Pe~~weIDL~~veal~DENT~Ai 203 (447)
T KOG0259|consen 134 GCSQAIELAISSLANPGANILLPRPGFPL----YDTRAIYSGLEVRYYDLL------PEKDWEIDLDGVEALADENTVAI 203 (447)
T ss_pred cchHHHHHHHHHhcCCCCceecCCCCCch----HHHhhhhcCceeEeeccc------CcccceechHHHHHhhccCeeEE
Confidence 7653210 110 0111111 111222234455566653 233455568899999998 222
Q ss_pred ccccc-------cccchhhhHHHHHHHhCCcEEecccccc
Q 021097 153 LEWSL-------WSRDVEAEIVPTCRELGIGIVAYSPLGR 185 (317)
Q Consensus 153 ~~~~~-------~~~~~~~~~~~~~~~~gi~v~a~~pl~~ 185 (317)
+-.|+ +..+-.+++.+.|+++||-||+=...+.
T Consensus 204 vviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~ 243 (447)
T KOG0259|consen 204 VVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGH 243 (447)
T ss_pred EEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcce
Confidence 32333 2333347899999999999998555543
No 19
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.18 E-value=7.7 Score=36.68 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 021097 38 SDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (317)
Q Consensus 38 ~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL 117 (317)
-....+++.|++.|++++|||...-. ...+.... .+-.+.+..-+|..+ ..+--.....+++--.
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a---~~Agit~v~~~G~dP-------Gi~nv~a~~a~~~~~~-- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEA---KKAGITAVLGCGFDP-------GITNVLAAYAAKELFD-- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---hhhhhHHH---HHcCeEEEcccCcCc-------chHHHHHHHHHHHhhc--
Confidence 44568999999999999999987652 22222222 334566666666442 2222222233332222
Q ss_pred CCCcccEEEeccCCCC
Q 021097 118 DIDCIDLYYQHRIDTR 133 (317)
Q Consensus 118 ~~d~iDl~~lH~p~~~ 133 (317)
.+++||+|..+-|++.
T Consensus 144 ~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 EIESIDIYVGGLGEHG 159 (389)
T ss_pred cccEEEEEEecCCCCC
Confidence 5899999999998775
No 20
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=74.79 E-value=30 Score=30.12 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=72.4
Q ss_pred CCEEeC-cCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccC
Q 021097 52 ITLLDT-SDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRI 130 (317)
Q Consensus 52 i~~~DT-A~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p 130 (317)
++.++. +..|+. -+++.+.+|.++ -.+++..+-|+..... .........+.+.+.+-+.++-|+ +.+..+++.-|
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iT-H~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~P 94 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLIT-HERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFP 94 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCC-CCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHhe-ecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcC
Confidence 555554 445653 367889999988 5688999999975532 000011234566466666999999 99999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cccccc--cccc-hhhhHHHHHHHhCCcEEec
Q 021097 131 DTRVPIEVTIGELKKLVEEAV-QLEWSL--WSRD-VEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 131 ~~~~~~~~~~~al~~l~~~~~-q~~~~~--~~~~-~~~~~~~~~~~~gi~v~a~ 180 (317)
-.-..-.+.++.|..+.+..- .+++-+ -+.. ...++++.++++|+..+.-
T Consensus 95 psf~~~~~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v~~ 148 (230)
T PF01904_consen 95 PSFRFTPENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALVIA 148 (230)
T ss_dssp TT--S-HHHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEEEE
T ss_pred CCcCCCHHHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEEEe
Confidence 654445677888888888732 222211 1111 1357999999999998754
No 21
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=73.16 E-value=60 Score=27.95 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHH
Q 021097 34 PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (317)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~S 113 (317)
..+.++..++++.|.+.|+.-+-..+.|= +...+.|+. .++-|+|=+++.++. ...+.-...+++.
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~~---~~v~v~tVigFP~G~------~~~~~K~~E~~~A 79 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLKG---TEVRICTVVGFPLGA------STTDVKLYETKEA 79 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcCC---CCCeEEEEeCCCCCC------CcHHHHHHHHHHH
Confidence 34788899999999999999888776653 355666654 367788888866431 2333344555555
Q ss_pred HHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhc------ccccccccchhhhHHHHHHHhCCcEEec
Q 021097 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQ------LEWSLWSRDVEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 114 L~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q------~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 180 (317)
++ +|.|-||+++-...-....+....+.+.++++.+.. ++...+....-....+.|.+.|.-++--
T Consensus 80 v~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 80 IK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 55 799999998776544445677777888888776321 2222333322235666777888888754
No 22
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=72.70 E-value=60 Score=29.01 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=88.1
Q ss_pred CcceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCC
Q 021097 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKR 97 (317)
Q Consensus 18 s~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 97 (317)
-.||+++|....+.|...++....+-....+...+|.++--..|=.-.+++.+-+|.+. ..+++..+-|+.....-
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-~p~~FrFsvK~~~~iTH--- 78 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-TPDDFRFSVKAPRAITH--- 78 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-CCCCeEEEEEecccccc---
Confidence 35777777764332322222222232234455567777644333223477888899986 78999999999754210
Q ss_pred CCCCCH---HHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH------HhcccccccccchhhhHHH
Q 021097 98 EIRGDP---AYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE------AVQLEWSLWSRDVEAEIVP 168 (317)
Q Consensus 98 ~~~~~~---~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~------~~q~~~~~~~~~~~~~~~~ 168 (317)
....+ ..+.+.+.+-++.|| +.+..+++.-|-.-..-.+.++.|+.+.+. ++..+.-.+.+.. ...+.
T Consensus 79 -~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf~~~~~n~~~l~~f~~~l~~~~~avE~Rh~~w~~~~-~~~~~ 155 (263)
T COG1801 79 -QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSFKYTPENLEYLEKFLDLLPGFPLAVEFRHASWFRKE-EVPLE 155 (263)
T ss_pred -hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcccCChhhHHHHHHHHHhcccccceEEEechhhhCcc-hhHHH
Confidence 11122 234455555566777 689999999886543334556666666655 4444444433332 34777
Q ss_pred HHHHhCCcE
Q 021097 169 TCRELGIGI 177 (317)
Q Consensus 169 ~~~~~gi~v 177 (317)
.+.+.++.+
T Consensus 156 ~~~~~~~i~ 164 (263)
T COG1801 156 ILLERGVIV 164 (263)
T ss_pred HHHhcCeEE
Confidence 777777766
No 23
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.96 E-value=53 Score=28.98 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHhcCCCcccEEEe--ccCCCCCCHHHHHHHHHHHHHH------H-----hcccccccccch---------hhhHHH
Q 021097 111 EASLKRLDIDCIDLYYQ--HRIDTRVPIEVTIGELKKLVEE------A-----VQLEWSLWSRDV---------EAEIVP 168 (317)
Q Consensus 111 e~SL~rL~~d~iDl~~l--H~p~~~~~~~~~~~al~~l~~~------~-----~q~~~~~~~~~~---------~~~~~~ 168 (317)
=+.++++|.++|++..- |...+.. ....++.+.++.++ . +..++|++.... -...++
T Consensus 19 l~~~~~~G~~~vEl~~~~~~~~~~~~-~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 97 (275)
T PRK09856 19 FRDASELGYDGIEIWGGRPHAFAPDL-KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMD 97 (275)
T ss_pred HHHHHHcCCCEEEEccCCcccccccc-CchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHH
Confidence 34567899999998531 2111111 12335556655555 1 122345433321 136789
Q ss_pred HHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCC
Q 021097 169 TCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCT 235 (317)
Q Consensus 169 ~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s 235 (317)
+|+..|...+...|...|... ...+.++...+.++.+.++|+++|+.
T Consensus 98 ~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 98 MAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 999999999877664332110 11234566778888899999998864
No 24
>PRK08392 hypothetical protein; Provisional
Probab=63.42 E-value=95 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCEEeCcCCc
Q 021097 40 MIALIHHAINSGITLLDTSDIY 61 (317)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Y 61 (317)
..++++.|.+.|++.+=.+++.
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~ 37 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHI 37 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCC
Confidence 6789999999999999776665
No 25
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=62.53 E-value=47 Score=26.54 Aligned_cols=63 Identities=6% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHH
Q 021097 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD--IDCIDLYYQHRIDTRVPIEVTIGELKKLVEE 149 (317)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~--~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~ 149 (317)
.|=-+.|+-|++.. ..+..|++.+.++.+.+. ....|++++.......++.+....|..+.++
T Consensus 46 ~RlG~sVSKKvg~A---------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA---------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc---------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 46668888887743 367788888888888764 3568999999987666677777777666655
No 26
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=60.88 E-value=18 Score=32.88 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEeccCCC----CCCHHHHHHHHHHHHHH--------------Hhcc-----cccccc
Q 021097 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDT----RVPIEVTIGELKKLVEE--------------AVQL-----EWSLWS 159 (317)
Q Consensus 103 ~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~----~~~~~~~~~al~~l~~~--------------~~q~-----~~~~~~ 159 (317)
.+.+++.|.+-+++.++|++=++..-.-.+ ......++++|++..++ +..- .+.+-+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN~tP~~ 210 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVNGTPSN 210 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE-SSST
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEeccCcc
Confidence 356788999999999988543332222111 01223456777766664 2222 222222
Q ss_pred cchhhhHHHHHHHhCCcEEec---cccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCH
Q 021097 160 RDVEAEIVPTCRELGIGIVAY---SPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTP 236 (317)
Q Consensus 160 ~~~~~~~~~~~~~~gi~v~a~---~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~ 236 (317)
.-....+.+.|+++|+.+.+- ++|+. +-.++++ ++.++|.+.|..-
T Consensus 211 ~a~~P~l~ela~~~gvpi~GdD~KT~lAA------------------------------plvlDLi-rl~~la~r~g~~G 259 (295)
T PF07994_consen 211 IADDPALVELAEEKGVPIAGDDGKTPLAA------------------------------PLVLDLI-RLAKLALRRGMGG 259 (295)
T ss_dssp TTTSHHHHHHHHHHTEEEEESSBS-HHHH------------------------------HHHHHHH-HHHHHHHHTTS-E
T ss_pred ccCCHHHHHHHHHcCCCeecchHhhhhhh------------------------------HHHHHHH-HHHHHHHHcCCCC
Confidence 211246888888888887652 11111 1223333 7889999999888
Q ss_pred HHHHHHHHhhCCCCeEeccCCCChHHHHH
Q 021097 237 SQLALAWVHHQGDDVCPIPGTTKVENCNQ 265 (317)
Q Consensus 237 ~q~al~~~l~~~~v~~vi~g~~~~~~l~e 265 (317)
.+-.++|.+..|. +=+|......+.+
T Consensus 260 v~~~ls~ffK~P~---~~~g~~~~~~l~~ 285 (295)
T PF07994_consen 260 VQEWLSFFFKSPM---VPPGPPQEHDLFE 285 (295)
T ss_dssp EHHHHHHHBSS-T-----TTSTT--HHHH
T ss_pred hhHHHHHHhcCCC---ccCCCCCCCcHHH
Confidence 8889999999995 2366666666633
No 27
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=57.47 E-value=98 Score=27.24 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHH---------------------HHHhccCCCCCEEEEeccCcccC
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILL---------------------GKALKGGMRERVELATKFGISFA 93 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~l---------------------G~al~~~~R~~~~I~tK~~~~~~ 93 (317)
.+.++..++.++|-+.||.||=|.-.-. +=+.+ -..-+ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~s---- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGMS---- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT-----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCCC----
Confidence 4678899999999999999998775332 22222 11111 345577777544
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCC-CCCHHH-HHHHHHHHHHHH-hcccccccccchhhhHHHHH
Q 021097 94 DGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDT-RVPIEV-TIGELKKLVEEA-VQLEWSLWSRDVEAEIVPTC 170 (317)
Q Consensus 94 ~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~-~~~~~~-~~~al~~l~~~~-~q~~~~~~~~~~~~~~~~~~ 170 (317)
+.+.|.++++-..++- .-++.++|+... ..+.++ -++.+..|++.. +.+.||=-.. .....-.|
T Consensus 124 --------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~A 190 (241)
T PF03102_consen 124 --------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAA 190 (241)
T ss_dssp ---------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHH
T ss_pred --------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHH
Confidence 5566766666654444 358999999854 234443 478888888873 3334443333 22334455
Q ss_pred HHhCCcEEe
Q 021097 171 RELGIGIVA 179 (317)
Q Consensus 171 ~~~gi~v~a 179 (317)
...|..||=
T Consensus 191 valGA~vIE 199 (241)
T PF03102_consen 191 VALGARVIE 199 (241)
T ss_dssp HHTT-SEEE
T ss_pred HHcCCeEEE
Confidence 567777764
No 28
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=55.73 E-value=32 Score=27.94 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH------HhcccccccccchhhhHHHHHHHhCCcEEecc
Q 021097 108 AACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 181 (317)
Q Consensus 108 ~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~ 181 (317)
..++++|+.+| +.|+.++.. ..+.+.++.++ +..-.|....++.+..+.+.|.++||.+..+.
T Consensus 56 ~~L~~~L~~~g---~~L~v~~g~--------~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 56 ADLQESLRKLG---IPLLVLRGD--------PEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHHHHHHTT---S-EEEEESS--------HHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHhcC---cceEEEecc--------hHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEEC
Confidence 55677777777 678888875 34455555555 22233444444445688999999999997653
No 29
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=53.84 E-value=50 Score=26.89 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEecc-CcccCCCCCCCCCCHHHHHHHH
Q 021097 32 GPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKF-GISFADGKREIRGDPAYVRAAC 110 (317)
Q Consensus 32 ~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~-~~~~~~~~~~~~~~~~~i~~~v 110 (317)
|...+++...-.+++|-+.||.+|=.|..||. +-..+-+.+.. . =++++.|-- +... . +.-.+...+
T Consensus 8 G~eNT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e-~-------g~~e~~~E~ 75 (186)
T COG1751 8 GKENTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEE-K-------GTQEMDEEV 75 (186)
T ss_pred cccchHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeeccccc-C-------CceecCHHH
Confidence 34445666777889999999999999999985 54444455544 1 235555543 3321 1 122355667
Q ss_pred HHHHHhcCCC
Q 021097 111 EASLKRLDID 120 (317)
Q Consensus 111 e~SL~rL~~d 120 (317)
++-|+..|.+
T Consensus 76 ~~~L~erGa~ 85 (186)
T COG1751 76 RKELKERGAK 85 (186)
T ss_pred HHHHHHcCce
Confidence 7888888854
No 30
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=53.38 E-value=1.7e+02 Score=26.22 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG 62 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 62 (317)
+.+...++++...+.|...|+-.=-|.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfS 55 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFS 55 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 678889999999999999998655553
No 31
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=49.41 E-value=1.4e+02 Score=25.73 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC-CCcHH---HHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG-PHTNE---ILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE---~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve 111 (317)
+.++...+.+.|.+.|..|+=|+..|+ .|.+. +.+.+.++. + +..|..-. .+ +.+...+-++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaGG-------ir-t~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASGG-------VR-TAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeCC-------CC-CHHHHHHHHH
Confidence 557788999999999999999999987 34332 344455443 2 33343211 11 6777888888
Q ss_pred HHHHhcCCCc
Q 021097 112 ASLKRLDIDC 121 (317)
Q Consensus 112 ~SL~rL~~d~ 121 (317)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8889999875
No 32
>PRK04527 argininosuccinate synthase; Provisional
Probab=48.57 E-value=80 Score=30.09 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCC---EEeCcCCcCCCcHHHHHHHHhcc--CCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGIT---LLDTSDIYGPHTNEILLGKALKG--GMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~---~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~v 110 (317)
..++..++-+.|.+.|+. .+|+-..| .|.++-.+++. ......-+.| .++-.+-+.+
T Consensus 40 ~~~El~~a~~~A~~lG~~~~~viD~~eef----~e~vi~p~i~aNa~y~G~yPl~~--------------~nR~~~~~~l 101 (400)
T PRK04527 40 DAEERDFIEKRAAELGAASHVTVDGGPAI----WEGFVKPLVWAGEGYQGQYPLLV--------------SDRYLIVDAA 101 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCHHHH----HHHHHHHHHhcchhhcCCCCCcc--------------ccHHHHHHHH
Confidence 346677888889999986 77877777 67888888864 2222222222 1344466666
Q ss_pred HHHHHhcCCCcccEEEeccCC----CCCCHHHHHHHHHHHHHH--HhcccccccccchhhhHHHHHHHhCCcEE
Q 021097 111 EASLKRLDIDCIDLYYQHRID----TRVPIEVTIGELKKLVEE--AVQLEWSLWSRDVEAEIVPTCRELGIGIV 178 (317)
Q Consensus 111 e~SL~rL~~d~iDl~~lH~p~----~~~~~~~~~~al~~l~~~--~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 178 (317)
-+-.+++|.++ ..|.-+ .....+-.+.++.++.-- .....+.- .....+.+++|++|||.|-
T Consensus 102 ~e~A~~~G~~~----IA~G~tgkgnDq~rfrpg~~Al~el~ViaPlre~~~~k--~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 102 LKRAEELGTRI----IAHGCTGMGNDQVRFDLAVKALGDYQIVAPIREIQKEH--TQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHHHHHCCCCE----EEecCcCCCCchhhccHHHHHhhcCCccchHHHhcCcc--cccHHHHHHHHHHcCCCCC
Confidence 67777889775 478764 122344556666533211 11111111 1134579999999999884
No 33
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.78 E-value=2e+02 Score=25.27 Aligned_cols=137 Identities=15% Similarity=0.004 Sum_probs=68.6
Q ss_pred CcceecccccCcCCCCCCCHHHHHHHHHHHHHc-CCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCC
Q 021097 18 SAQGLGCMGMSAFYGPPKPESDMIALIHHAINS-GITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGK 96 (317)
Q Consensus 18 s~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~ 96 (317)
|+|-+||..+. +. ++++.|++. |...+=.|=---+-.....-...+.-.+++++.+.--...
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaG------ 71 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAG------ 71 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT------
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCC------
Confidence 89999997762 33 356666654 7666654421111000000112222235556554333221
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHH-HhcccccccccchhhhHHHHHHHhC
Q 021097 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTR-VPIEVTIGELKKLVEE-AVQLEWSLWSRDVEAEIVPTCRELG 174 (317)
Q Consensus 97 ~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~-~~~~~~~~al~~l~~~-~~q~~~~~~~~~~~~~~~~~~~~~g 174 (317)
..+.+...+..+-..+-++++.|=|=.+-.+..- -+..++++|.+.|+++ +.-++|-.-+. -+...+.+-|
T Consensus 72 ---c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~----v~akrL~d~G 144 (247)
T PF05690_consen 72 ---CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP----VLAKRLEDAG 144 (247)
T ss_dssp ----SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-H----HHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCH----HHHHHHHHCC
Confidence 2367777788888888899998876655544332 2356899999999988 55556654333 2444444555
Q ss_pred CcEE
Q 021097 175 IGIV 178 (317)
Q Consensus 175 i~v~ 178 (317)
...+
T Consensus 145 caav 148 (247)
T PF05690_consen 145 CAAV 148 (247)
T ss_dssp -SEB
T ss_pred CCEE
Confidence 5543
No 34
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.16 E-value=43 Score=27.78 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=35.6
Q ss_pred hhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCC
Q 021097 164 AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCT 235 (317)
Q Consensus 164 ~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s 235 (317)
...++.|++.|+..+...+-..+... .....+.++...+.+..+.++|+++|++
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~------------------~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGP------------------EDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSST------------------TSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCceeecCccccccc------------------CCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 47899999999998876543111100 1112345677778888999999988864
No 35
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=44.60 E-value=2e+02 Score=27.09 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHHHHHH---Hhcccccccccc-------hhhhHHHHHHHhCCcEEec
Q 021097 140 IGELKKLVEE---AVQLEWSLWSRD-------VEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 140 ~~al~~l~~~---~~q~~~~~~~~~-------~~~~~~~~~~~~gi~v~a~ 180 (317)
+++|++.... -..+-.|+-|+. ...++.+.|++|||.||+=
T Consensus 147 ~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISD 197 (388)
T COG1168 147 FDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISD 197 (388)
T ss_pred HHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEee
Confidence 6777765555 233334444332 2368999999999999973
No 36
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=44.27 E-value=3.3e+02 Score=27.76 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 021097 41 IALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID 120 (317)
Q Consensus 41 ~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d 120 (317)
.+..+.|-+.|+..+|+.--|=. +....+.+..++ -..++|.-|-++....|-..+......+....++ +++|..+
T Consensus 78 ~~~~~~~~~~~~~viDaTCP~V~-k~~~~~~~~~~~--g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~-~~~~~~~ 153 (647)
T PRK00087 78 PEVLEELKDKGLKVIDATCPFVK-NIQKLAKKYYEE--GYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEE-AEKLPFD 153 (647)
T ss_pred HHHHHHHHHCCCeEEECCCcCch-HHHHHHHHHHhC--CCEEEEEeCCCCCeeeeeccccCCCEEEECCHHH-HhhCCCC
Confidence 45778888999999996644421 133334444333 3456666665554332210011011111111111 2223221
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHH------HhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCC
Q 021097 121 CIDLYYQHRIDTRVPIEVTIGELKKLVEE------AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKL 194 (317)
Q Consensus 121 ~iDl~~lH~p~~~~~~~~~~~al~~l~~~------~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~ 194 (317)
=-+.++-. .. ...++...-.+.|++. .+.+-+--.+| +..+.+.|.+.++-++.-++- +
T Consensus 154 -~~~~~~~Q-TT-~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~R--q~a~~~la~~~d~~~vvGg~~-----S----- 218 (647)
T PRK00087 154 -KKICVVSQ-TT-EKQENFEKVLKELKKKGKEVKVFNTICNATEVR--QEAAEKLAKKVDVMIVVGGKN-----S----- 218 (647)
T ss_pred -CCEEEEEc-CC-CcHHHHHHHHHHHHHhCCCcccCCCcchhhhhH--HHHHHHHHhhCCEEEEECCCC-----C-----
Confidence 01222221 11 1233333334444444 22222222233 456888888777766653111 1
Q ss_pred CCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHhhCCCCeEeccCCCChHHHHH
Q 021097 195 VESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGC------TPSQLALAWVHHQGDDVCPIPGTTKVENCNQ 265 (317)
Q Consensus 195 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~e 265 (317)
.. -.+|.++|++.+. ++.++.-.|.-... ...+..|+|+|+.+-+
T Consensus 219 sN-------------------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~-~vgitagaStP~~~i~ 269 (647)
T PRK00087 219 SN-------------------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVK-IIGVTAGASTPDWIIE 269 (647)
T ss_pred cc-------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEeccCCCHHHHH
Confidence 00 0278888888763 67889889987665 4677899999996644
No 37
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=44.05 E-value=91 Score=24.16 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCcEEe
Q 021097 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 179 (317)
Q Consensus 100 ~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 179 (317)
+.+.+.+.+.+++.|+..+.+.-++-.|-.++...+ +..+++.+++.|+.+..
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~---------------------------E~~l~~~A~~l~~~~~~ 63 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKAD---------------------------EPGLLELAEELGIPLRF 63 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS-----------------------------HHHHHHHHHCTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCC---------------------------CHHHHHHHHHhCCCeEE
Confidence 457888999999999998887777777766654322 45788888888888887
Q ss_pred ccc
Q 021097 180 YSP 182 (317)
Q Consensus 180 ~~p 182 (317)
|++
T Consensus 64 ~~~ 66 (121)
T PF01890_consen 64 FSA 66 (121)
T ss_dssp E-H
T ss_pred ECH
Confidence 754
No 38
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=41.33 E-value=70 Score=22.88 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 021097 216 EHNKKLFERVNEIATRKGCTPSQLALAW 243 (317)
Q Consensus 216 ~~~~~~~~~l~~~a~~~~~s~~q~al~~ 243 (317)
...++.+.+|.++|++.+++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5678889999999999999999987543
No 39
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=41.28 E-value=75 Score=24.83 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCcEEe
Q 021097 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 179 (317)
Q Consensus 100 ~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 179 (317)
+.+.+.|.+.+++.|+..+...-++-.|..++... .+..+++.+++.|+.+.-
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~---------------------------~E~~L~~~A~~lg~pl~~ 65 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKA---------------------------DEAGLLALCARHGWPLRA 65 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhc---------------------------CCHHHHHHHHHhCCCeEE
Confidence 45888899999999999987665555555554321 145788889999988887
Q ss_pred ccc
Q 021097 180 YSP 182 (317)
Q Consensus 180 ~~p 182 (317)
|++
T Consensus 66 ~~~ 68 (126)
T PRK07027 66 FSA 68 (126)
T ss_pred eCH
Confidence 743
No 40
>PRK06424 transcription factor; Provisional
Probab=41.15 E-value=1.2e+02 Score=24.32 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhCCcEEec---ccccc--ccCCCCCCC-CCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCH
Q 021097 163 EAEIVPTCRELGIGIVAY---SPLGR--GFFSSGPKL-VESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTP 236 (317)
Q Consensus 163 ~~~~~~~~~~~gi~v~a~---~pl~~--G~l~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~ 236 (317)
+-.+-+.|.+.|..|..+ +|... ...++.... .........+ .-..+..+..+......+.++.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKK-YKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCC-ccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 346888999999999998 55532 111100000 0000000000 0001111112223445567777778889999
Q ss_pred HHHHHHHHhh
Q 021097 237 SQLALAWVHH 246 (317)
Q Consensus 237 ~q~al~~~l~ 246 (317)
.++|-+--++
T Consensus 101 ~eLA~~iGvs 110 (144)
T PRK06424 101 ADLAAKIFER 110 (144)
T ss_pred HHHHHHhCCC
Confidence 9888665543
No 41
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=40.90 E-value=1.4e+02 Score=25.89 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC-CCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG-PHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL 114 (317)
+.++..++.+.+.+.|..|+=|+..|+ .|.+.+.+....+.. ..++-|-.=.|.. +.+...+-++.--
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~~IKasGGIr----------t~~~a~~~i~aGA 202 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRVGVKASGGIR----------TLEDALAMIEAGA 202 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCceEEeeCCcC----------CHHHHHHHHHcCc
Confidence 678889999999999999999999995 466666665555442 2222222111221 5566666666666
Q ss_pred HhcCCCc
Q 021097 115 KRLDIDC 121 (317)
Q Consensus 115 ~rL~~d~ 121 (317)
.|+||.+
T Consensus 203 ~riGtS~ 209 (221)
T PRK00507 203 TRLGTSA 209 (221)
T ss_pred ceEccCc
Confidence 6666643
No 42
>PRK08609 hypothetical protein; Provisional
Probab=40.42 E-value=89 Score=31.32 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCEEeCcCCc
Q 021097 40 MIALIHHAINSGITLLDTSDIY 61 (317)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Y 61 (317)
..++++.|.+.|+.++=.++|+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~ 372 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHS 372 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCC
Confidence 5569999999999999988886
No 43
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=40.10 E-value=2e+02 Score=25.58 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=51.6
Q ss_pred CHH-HHHHHHHHHHHcCCCEEeCcCCcCC-CcHH---HHHHHHhccC-CCCCEEEEeccCcccCCCCCCCCCCHHHHHHH
Q 021097 36 PES-DMIALIHHAINSGITLLDTSDIYGP-HTNE---ILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAA 109 (317)
Q Consensus 36 ~~~-~~~~~l~~A~~~Gi~~~DTA~~Yg~-G~sE---~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (317)
+++ +..++.+.|.+.|..|+=|+..|+. |.+. +++-+.+++. ..++ +.-|..-. --+.+....-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG--------Irt~~~A~~~ 213 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG--------VRTAEDAAQY 213 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC--------CCCHHHHHHH
Confidence 344 5888999999999999999999974 4443 3444444331 0122 33344211 1267778888
Q ss_pred HHHHHHhcCCCccc
Q 021097 110 CEASLKRLDIDCID 123 (317)
Q Consensus 110 ve~SL~rL~~d~iD 123 (317)
++.--+.||.++++
T Consensus 214 i~ag~~~lg~~~~~ 227 (257)
T PRK05283 214 LALADEILGADWAD 227 (257)
T ss_pred HHHHHHHhChhhcC
Confidence 88888899988876
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.34 E-value=29 Score=27.43 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=20.6
Q ss_pred cchhhhHHHHHHHhCCcEEeccccc
Q 021097 160 RDVEAEIVPTCRELGIGIVAYSPLG 184 (317)
Q Consensus 160 ~~~~~~~~~~~~~~gi~v~a~~pl~ 184 (317)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445689999999999999997765
No 45
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.28 E-value=3.1e+02 Score=24.97 Aligned_cols=132 Identities=15% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCC----cHHHHHHHHhccC-CCCCEEEEeccCcccCCCCCCCCCCHHHHHHH
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPH----TNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAA 109 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G----~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ 109 (317)
.+.++..++++.+.+.|++.+.-.. |.- .-.+++.. +++. .-.++.|+|-... +.+.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l---------------l~~~ 110 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL---------------LARR 110 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh---------------HHHH
Confidence 4778899999999999998776432 110 12222222 3331 1235666665321 1122
Q ss_pred HHHHHHhcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHHHh-ccccc--ccc---cchhhhHHHHHHHhCC
Q 021097 110 CEASLKRLDIDCIDLYYQHRIDT--------RVPIEVTIGELKKLVEEAV-QLEWS--LWS---RDVEAEIVPTCRELGI 175 (317)
Q Consensus 110 ve~SL~rL~~d~iDl~~lH~p~~--------~~~~~~~~~al~~l~~~~~-q~~~~--~~~---~~~~~~~~~~~~~~gi 175 (317)
-+.|...|++.|- +-||..++ ...++.++++++.+++.-. .+.+| +.. ...-.++++++++.|+
T Consensus 111 -~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 -AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred -HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2345555665553 44555432 2346778888888877622 23332 221 1112478999999986
Q ss_pred cE--Eeccccccc
Q 021097 176 GI--VAYSPLGRG 186 (317)
Q Consensus 176 ~v--~a~~pl~~G 186 (317)
.+ +.+.|++.+
T Consensus 189 ~v~~ie~~p~~~~ 201 (331)
T PRK00164 189 QLRFIELMPTGEG 201 (331)
T ss_pred eEEEEEeeECCCC
Confidence 54 667777644
No 46
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=38.23 E-value=3.7e+02 Score=25.79 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccC-CCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL 114 (317)
+.+-....++.|+++|+..|-.=+.-.+=++-+.-.++.+.. ..-+..|+--.++- ++-+. --.+-+-|
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPv---------Ht~e~-yv~~akel 165 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPV---------HTLEY-YVELAKEL 165 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCc---------ccHHH-HHHHHHHH
Confidence 456678899999999998776666666555666666666652 33333443333322 23332 23455667
Q ss_pred HhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhH----HHHHHHhCCcEE--ecccccccc
Q 021097 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEI----VPTCRELGIGIV--AYSPLGRGF 187 (317)
Q Consensus 115 ~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~----~~~~~~~gi~v~--a~~pl~~G~ 187 (317)
..+|+|.|= |-...--....++++-...+++.+- ++.++-.+. ..++ .-.+-+.|+-.+ |.||+++|.
T Consensus 166 ~~~g~DSIc---iKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~-TsG~a~m~ylkAvEAGvD~iDTAisp~S~gt 239 (472)
T COG5016 166 LEMGVDSIC---IKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHA-TSGMAEMTYLKAVEAGVDGIDTAISPLSGGT 239 (472)
T ss_pred HHcCCCEEE---eecccccCChHHHHHHHHHHHHhcC-CeeEEeccc-ccchHHHHHHHHHHhCcchhhhhhccccCCC
Confidence 788886653 3322222234556666666666632 444444432 1122 223346677776 899999884
No 47
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=37.41 E-value=99 Score=27.16 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhc--------ccccccccchhhhHHHHHHHhCCcEE
Q 021097 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQ--------LEWSLWSRDVEAEIVPTCRELGIGIV 178 (317)
Q Consensus 107 ~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q--------~~~~~~~~~~~~~~~~~~~~~gi~v~ 178 (317)
.+.++..|+-.| +|||++-+-|-......++.++..-++.++..- .++ .+.+..-++.++.|++.|..++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~-~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEI-AHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHH-HHHhhhHHHHHHHHHHcCCCEE
Confidence 367788888899 999999998876655555666666666665000 000 0111223467778888887776
Q ss_pred ec
Q 021097 179 AY 180 (317)
Q Consensus 179 a~ 180 (317)
=-
T Consensus 89 Ei 90 (237)
T TIGR03849 89 EI 90 (237)
T ss_pred EE
Confidence 43
No 48
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=37.05 E-value=3.4e+02 Score=25.71 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEec
Q 021097 101 GDPAYVRAACEASLKRLDIDCIDLYYQH 128 (317)
Q Consensus 101 ~~~~~i~~~ve~SL~rL~~d~iDl~~lH 128 (317)
.+.+.+.+.++..+ +|+.++|.+|.+.
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~ 205 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLV 205 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecce
Confidence 35666666666554 3778888887665
No 49
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=36.83 E-value=2.1e+02 Score=27.58 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEecc-CCCC-----------C--CHHHHH---HHHHHHHHH--Hhccccccccc
Q 021097 100 RGDPAYVRAACEASLKRLDIDCIDLYYQHR-IDTR-----------V--PIEVTI---GELKKLVEE--AVQLEWSLWSR 160 (317)
Q Consensus 100 ~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~-p~~~-----------~--~~~~~~---~al~~l~~~--~~q~~~~~~~~ 160 (317)
..+.+.+++.++..++ |+.++|++|.|.- |... . +.++.. ....+...+ ..|++.+-+.+
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~yeis~far 304 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQLSNSHWAR 304 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEeeeeeec
Confidence 3477777777776654 8999999998863 3210 0 112222 221222222 55655555554
Q ss_pred ch-hhhHHHHHHHhCCcEEeccccccccCC
Q 021097 161 DV-EAEIVPTCRELGIGIVAYSPLGRGFFS 189 (317)
Q Consensus 161 ~~-~~~~~~~~~~~gi~v~a~~pl~~G~l~ 189 (317)
.. +.......-..+..+++.++=+.|.+.
T Consensus 305 ~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~ 334 (449)
T PRK09058 305 TTRERNLYNLLIKQGAECLPFGAGAGGSIG 334 (449)
T ss_pred CCccccHHHHHHcCCCCEEEEccCcccccC
Confidence 32 223444445567888888887777664
No 50
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.67 E-value=89 Score=26.84 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH-HhcccccccccchhhhHHHHHHHhCCcEEeccc
Q 021097 104 AYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE-AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 182 (317)
Q Consensus 104 ~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~-~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 182 (317)
..+.+.+++.++.+|.+. .++ .+...+.+.....++.+..+ +.-+-.++.+.......++.|++.||.|+.+..
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEec
Confidence 457889999999999643 222 33334456677788887776 333334444444345789999999999998644
Q ss_pred c
Q 021097 183 L 183 (317)
Q Consensus 183 l 183 (317)
-
T Consensus 89 ~ 89 (257)
T PF13407_consen 89 D 89 (257)
T ss_dssp T
T ss_pred c
Confidence 3
No 51
>PRK05660 HemN family oxidoreductase; Provisional
Probab=36.42 E-value=3.7e+02 Score=25.24 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEec-cCCC-------CCC-HHHHHHH---HHHHHHH--HhcccccccccchhhhH
Q 021097 101 GDPAYVRAACEASLKRLDIDCIDLYYQH-RIDT-------RVP-IEVTIGE---LKKLVEE--AVQLEWSLWSRDVEAEI 166 (317)
Q Consensus 101 ~~~~~i~~~ve~SL~rL~~d~iDl~~lH-~p~~-------~~~-~~~~~~a---l~~l~~~--~~q~~~~~~~~~~~~~~ 166 (317)
.+.+.+.+.++..++ |+.++|.+|.+- .|+. ..+ .++.++. ..+..++ ..|.+.+-+.+......
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~~~~~ 249 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPGYQCQ 249 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCChhHH
Confidence 466777777776554 888998888774 2221 011 1222322 2222222 55555555544311110
Q ss_pred HHHHHHhCCcEEeccccccccCC
Q 021097 167 VPTCRELGIGIVAYSPLGRGFFS 189 (317)
Q Consensus 167 ~~~~~~~gi~v~a~~pl~~G~l~ 189 (317)
-...--++..+++.+|=+.|.+.
T Consensus 250 hn~~~w~~~~~lg~G~gA~s~~~ 272 (378)
T PRK05660 250 HNLNYWRFGDYLGIGCGAHGKLT 272 (378)
T ss_pred HHHHHhcCCCEEEEcCCcccccc
Confidence 01111135677887777776653
No 52
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=35.09 E-value=63 Score=29.07 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=43.4
Q ss_pred hhHHHHHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 021097 164 AEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPSQLALAW 243 (317)
Q Consensus 164 ~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~~q~al~~ 243 (317)
..++.++.++||.++-.|+=---+.+ .|.....+.+...+.+..+.++++++|+-..-
T Consensus 48 ~~~L~~n~~~~I~~yRisS~liP~as-----------------hp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~----- 105 (275)
T PF03851_consen 48 LRILEYNIAHGIRFYRISSDLIPLAS-----------------HPEVGWDWEEEFAEELAEIGDLAKENGIRLSM----- 105 (275)
T ss_dssp HHHHHHHHHTT--EEE--TTSSTTTT-----------------STT--S-HHHHHHHHHHHHHHHHHHTT-EEEE-----
T ss_pred HHHHHHHHHcCCCEEecCcccCCCCC-----------------CcccccchHHHHHHHHHHHHHHHHHcCCeEEe-----
Confidence 57999999999999876541111101 12222233456677788888899988854321
Q ss_pred HhhCCCCeEeccCCCChHHHHHHHhhc
Q 021097 244 VHHQGDDVCPIPGTTKVENCNQNIKAL 270 (317)
Q Consensus 244 ~l~~~~v~~vi~g~~~~~~l~en~~a~ 270 (317)
||+ .-++.++.+++-++..++.+
T Consensus 106 ---HP~-qf~vLnSp~~~Vv~~si~~L 128 (275)
T PF03851_consen 106 ---HPD-QFTVLNSPREEVVENSIRDL 128 (275)
T ss_dssp -------TT--TT-SSHHHHHHHHHHH
T ss_pred ---cCC-cceeCCCCCHHHHHHHHHHH
Confidence 454 35677888888887776654
No 53
>PLN02591 tryptophan synthase
Probab=34.81 E-value=3.2e+02 Score=24.13 Aligned_cols=113 Identities=9% Similarity=0.048 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC----CCcH-HHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG----PHTN-EILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAAC 110 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~G~s-E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~v 110 (317)
+.+...++++...+.|++.++-.=-|. +|-. .+.--++|+. ..+.+.+.+.+
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~-----------------------G~~~~~~~~~~ 70 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEK-----------------------GTTLDSVISML 70 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-----------------------CCCHHHHHHHH
Confidence 677788999999999999999554443 3311 2233334433 23445555666
Q ss_pred HHHHHhcCCCcccEEEeccCCCCCCHHHHHH-HHHHHHHHHhccccc-----ccccchhhhHHHHHHHhCCcEEec
Q 021097 111 EASLKRLDIDCIDLYYQHRIDTRVPIEVTIG-ELKKLVEEAVQLEWS-----LWSRDVEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 111 e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~-al~~l~~~~~q~~~~-----~~~~~~~~~~~~~~~~~gi~v~a~ 180 (317)
++..++.. +-++++-..++ +++ .++++.+++.+...+ -+..+...++.+.|+++|+..+..
T Consensus 71 ~~~r~~~~---~p~ilm~Y~N~------i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 71 KEVAPQLS---CPIVLFTYYNP------ILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred HHHhcCCC---CCEEEEecccH------HHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 55554333 34444444332 122 333444432222221 011122357888999999888865
No 54
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=34.41 E-value=46 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH----------HhcccccccccchhhhHHHHHHHhCCc
Q 021097 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE----------AVQLEWSLWSRDVEAEIVPTCRELGIG 176 (317)
Q Consensus 107 ~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~----------~~q~~~~~~~~~~~~~~~~~~~~~gi~ 176 (317)
...++..|+-.| +|||++-+-|-......++.++..-++.++ ...+-+. +..-++++++|++.|..
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~---q~~~~~yl~~~k~lGf~ 99 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQ---QGKFDEYLEECKELGFD 99 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHH---TT-HHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHh---cChHHHHHHHHHHcCCC
Confidence 467788888888 999999999876654445566666666555 1111111 22234677777777776
Q ss_pred EEec
Q 021097 177 IVAY 180 (317)
Q Consensus 177 v~a~ 180 (317)
.+=-
T Consensus 100 ~IEi 103 (244)
T PF02679_consen 100 AIEI 103 (244)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6643
No 55
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.22 E-value=2.6e+02 Score=22.80 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCC-CEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL 114 (317)
+.+...++++.+++.|++-+-+.. ..+-.+.+. ..+ ++-|..+++.... ....+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~------~~~~~~~~~~a~~a- 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG------LTTTEVKVAEVEEA- 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC------CCcHHHHHHHHHHH-
Confidence 567889999999999999886653 334333333 234 5777777775421 01134444555554
Q ss_pred HhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHH
Q 021097 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEA 150 (317)
Q Consensus 115 ~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~ 150 (317)
.++|.|.+.+..-+...+....++..+.+.++.+.+
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh
Confidence 445766655432222111112355566666666554
No 56
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.67 E-value=2.9e+02 Score=23.28 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL 114 (317)
.+.++..++++.|.+.|+.-+=+.+.+ -+ ...+.+++ ..+.+.+=++.... ....+....++++.+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~----v~-~~~~~l~~---~~~~v~~~~~fp~g------~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF----VP-LAREALKG---SGVKVCTVIGFPLG------ATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH----HH-HHHHHcCC---CCcEEEEEEecCCC------CCcHHHHHHHHHHHH
Confidence 367889999999999888877665543 22 24444543 33666665554432 134556667788888
Q ss_pred HhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhccc------ccccccchhhhHHHHHHHhCCcEEecc
Q 021097 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLE------WSLWSRDVEAEIVPTCRELGIGIVAYS 181 (317)
Q Consensus 115 ~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~------~~~~~~~~~~~~~~~~~~~gi~v~a~~ 181 (317)
+ +|.|-||+++--..-....++..++.+.++++.+...+ ...++.+.-....+.|.+.|.-++--+
T Consensus 80 ~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 80 A-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred H-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 7 69999998765543333456677888888887743222 122221112345666778888877543
No 57
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=32.48 E-value=3.8e+02 Score=24.27 Aligned_cols=164 Identities=14% Similarity=0.096 Sum_probs=84.1
Q ss_pred CcccCcceecccccCcCCCCCCCHHHHHHHHHHHHH-cCCCEEeCcCCcCCCc---HHHHHHHHhccC--CCCCEEEEec
Q 021097 14 GLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAIN-SGITLLDTSDIYGPHT---NEILLGKALKGG--MRERVELATK 87 (317)
Q Consensus 14 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DTA~~Yg~G~---sE~~lG~al~~~--~R~~~~I~tK 87 (317)
|.+| .|.||++.-+..-....+.++..+.+...++ .|++.+|--.-|+.-. +-..+-++|+.. .+..+.|+--
T Consensus 67 G~kV-iiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 67 GGDV-IVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFT 145 (294)
T ss_pred CCeE-EEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4454 5678877633211122245555555555654 4999999766555311 124556666552 2234444444
Q ss_pred cCcccCCCCCCCCCCHHHHHHHHHHHHHhcC--CCcccEEEeccCCC--CCC-HHHHHHHHHHHHHH-------------
Q 021097 88 FGISFADGKREIRGDPAYVRAACEASLKRLD--IDCIDLYYQHRIDT--RVP-IEVTIGELKKLVEE------------- 149 (317)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~--~d~iDl~~lH~p~~--~~~-~~~~~~al~~l~~~------------- 149 (317)
+.-.. ..+....+ .+-+..+..| +|+|.++-...-.. ..+ -..+..+.+.++.+
T Consensus 146 lp~~p------~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~~s~~~~ 217 (294)
T cd06543 146 LPVLP------TGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPKLSDAEL 217 (294)
T ss_pred cCCCC------CCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 33211 12333322 2333444444 46666665543332 122 34455666666666
Q ss_pred ------Hhcccccc-----cccchhhhHHHHHHHhCCcEEeccccccc
Q 021097 150 ------AVQLEWSL-----WSRDVEAEIVPTCRELGIGIVAYSPLGRG 186 (317)
Q Consensus 150 ------~~q~~~~~-----~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 186 (317)
.-++..|- +...--..+.++|+++||+.+.+..+..-
T Consensus 218 ~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 218 WAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 11222221 11111258999999999999999888643
No 58
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=32.44 E-value=62 Score=30.81 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCcccCcceecccccCcC-CCCCCCHH----HHHHHHHHHHHcCCC--EEeCcCC
Q 021097 13 QGLEVSAQGLGCMGMSAF-YGPPKPES----DMIALIHHAINSGIT--LLDTSDI 60 (317)
Q Consensus 13 tg~~vs~lglGt~~~g~~-~~~~~~~~----~~~~~l~~A~~~Gi~--~~DTA~~ 60 (317)
.|+...+|.||+-.+|.. |... +.+ .+.+++..-+++|++ |+||+-.
T Consensus 75 ~gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 75 VGFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred cCCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 355566899999998863 6554 333 367889999999999 8898864
No 59
>PRK09206 pyruvate kinase; Provisional
Probab=32.05 E-value=4.9e+02 Score=25.43 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLK 115 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~ 115 (317)
++....+ ++.++++|+.|+-.+-.=. ...=+.+.+.+.....+++.|..|+- +++.+ +.+++.++
T Consensus 171 tekD~~d-i~f~~~~~vD~ia~SFVr~-~~Dv~~~r~~l~~~~~~~~~iiaKIE------------t~eav-~nldeIl~ 235 (470)
T PRK09206 171 AEKDKQD-LIFGCEQGVDFVAASFIRK-RSDVLEIREHLKAHGGENIQIISKIE------------NQEGL-NNFDEILE 235 (470)
T ss_pred CHHHHHH-HHHHHHcCCCEEEEcCCCC-HHHHHHHHHHHHHcCCCCceEEEEEC------------CHHHH-HhHHHHHH
Confidence 4554544 6999999999997664432 11223456677663335789999986 33333 46666666
Q ss_pred hcCCCcccEEEeccCCC
Q 021097 116 RLDIDCIDLYYQHRIDT 132 (317)
Q Consensus 116 rL~~d~iDl~~lH~p~~ 132 (317)
- .|-+++-+-|-
T Consensus 236 ~-----~DgImVaRGDL 247 (470)
T PRK09206 236 A-----SDGIMVARGDL 247 (470)
T ss_pred h-----CCEEEECcchh
Confidence 5 78999987654
No 60
>COG0218 Predicted GTPase [General function prediction only]
Probab=31.86 E-value=3.3e+02 Score=23.29 Aligned_cols=98 Identities=10% Similarity=-0.068 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHH------cCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHH
Q 021097 38 SDMIALIHHAIN------SGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (317)
Q Consensus 38 ~~~~~~l~~A~~------~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve 111 (317)
+...+++..-++ ..+-.+|.-..--. .+..+=++|......=++|.||.... ......+.+.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DKi----------~~~~~~k~l~ 158 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADKL----------KKSERNKQLN 158 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEccccC----------ChhHHHHHHH
Confidence 445566665553 45668887655443 67888899988778889999998743 5556778888
Q ss_pred HHHHhcCCCcccE--EEeccCCCCCCHHHHHHHHHHHH
Q 021097 112 ASLKRLDIDCIDL--YYQHRIDTRVPIEVTIGELKKLV 147 (317)
Q Consensus 112 ~SL~rL~~d~iDl--~~lH~p~~~~~~~~~~~al~~l~ 147 (317)
...+.|+.+..|- +.+........+++.+..+.+..
T Consensus 159 ~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 159 KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 8888898777665 44444433344666666665543
No 61
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=31.18 E-value=43 Score=31.89 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=29.0
Q ss_pred CCcccCcceecccccCcC-CCCCCCHHH----HHHHHHHHHHcCCC--EEeCcCCc
Q 021097 13 QGLEVSAQGLGCMGMSAF-YGPPKPESD----MIALIHHAINSGIT--LLDTSDIY 61 (317)
Q Consensus 13 tg~~vs~lglGt~~~g~~-~~~~~~~~~----~~~~l~~A~~~Gi~--~~DTA~~Y 61 (317)
-|+...+|.||+-.+|.. |... +.++ +.++++..+++|++ |+||+-.-
T Consensus 78 ~g~~~~~iiLGGDHLGP~~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm~c 132 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPNPWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSMDC 132 (424)
T ss_dssp CT--GGGEEEEEEEESSCCCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C--
T ss_pred cCCchhhEEecCCCCCcccccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCCCC
Confidence 355667899999998864 5543 3333 67889999999999 88988543
No 62
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=30.27 E-value=73 Score=30.37 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=35.2
Q ss_pred CCcccCcceecccccCcC-CCCCCCHH----HHHHHHHHHHHcCCC--EEeCcCC
Q 021097 13 QGLEVSAQGLGCMGMSAF-YGPPKPES----DMIALIHHAINSGIT--LLDTSDI 60 (317)
Q Consensus 13 tg~~vs~lglGt~~~g~~-~~~~~~~~----~~~~~l~~A~~~Gi~--~~DTA~~ 60 (317)
.|+...+|.||+-.+|.. |... +.+ .+.+++..-+++|++ |+||+-.
T Consensus 74 ~gf~~~~iiLggDHlGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 127 (420)
T TIGR02810 74 IGFPRDRLILGGDHLGPNPWQHL-PADEAMAKAAALVDAYVEAGFTKIHLDASMG 127 (420)
T ss_pred cCCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 355566899999998864 6544 333 367899999999999 8898864
No 63
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=30.26 E-value=2.7e+02 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 021097 220 KLFERVNEIATRKGCTPSQLALAWVHH 246 (317)
Q Consensus 220 ~~~~~l~~~a~~~~~s~~q~al~~~l~ 246 (317)
.+.+.-+.+|+++|+++-|+-|.--++
T Consensus 187 ~L~~~r~~ic~~lg~~~dq~eLSMGMS 213 (244)
T KOG3157|consen 187 VLVKLRESICKKLGIPADQVELSMGMS 213 (244)
T ss_pred HHHHHHHHHHHHhCCChHHhhhhcccc
Confidence 344566788999999887766554443
No 64
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=30.24 E-value=73 Score=30.44 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCcccCcceecccccCcC-CCCCCCHH----HHHHHHHHHHHcCCC--EEeCcCCc
Q 021097 13 QGLEVSAQGLGCMGMSAF-YGPPKPES----DMIALIHHAINSGIT--LLDTSDIY 61 (317)
Q Consensus 13 tg~~vs~lglGt~~~g~~-~~~~~~~~----~~~~~l~~A~~~Gi~--~~DTA~~Y 61 (317)
.|+...+|.||+-.+|.. |... +.+ .+.++++.-+++|++ |+||+-.-
T Consensus 78 ~gf~~~~iiLGGDHLGPn~Wq~l-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~c 132 (426)
T PRK15458 78 LNFPQEALILGGDHLGPNRWQNL-PAAQAMANADDLIKSYVAAGFKKIHLDCSMSC 132 (426)
T ss_pred cCCChhhEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCC
Confidence 355566899999998863 6544 333 367899999999999 88988653
No 65
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.11 E-value=4.6e+02 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEec
Q 021097 100 RGDPAYVRAACEASLKRLDIDCIDLYYQH 128 (317)
Q Consensus 100 ~~~~~~i~~~ve~SL~rL~~d~iDl~~lH 128 (317)
..+.+.+.+.++..++ |+.++|.+|.+.
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 3477778777777664 889999998885
No 66
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=30.02 E-value=76 Score=21.50 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHh
Q 021097 224 RVNEIATRKGCTPSQLALAWVH 245 (317)
Q Consensus 224 ~l~~~a~~~~~s~~q~al~~~l 245 (317)
-+.+||+.+|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4668899999999999999985
No 67
>PF14502 HTH_41: Helix-turn-helix domain
Probab=29.72 E-value=62 Score=20.80 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCH--HHHHHHHHhhCCCCe
Q 021097 223 ERVNEIATRKGCTP--SQLALAWVHHQGDDV 251 (317)
Q Consensus 223 ~~l~~~a~~~~~s~--~q~al~~~l~~~~v~ 251 (317)
..+.++++++++|. .|-||+++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 36888899998875 899999999888643
No 68
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=29.66 E-value=4.4e+02 Score=24.05 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCC------cHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHH
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPH------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRA 108 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G------~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~ 108 (317)
.+.++..++++.+.+.|+..|.-+ | | .-.+++..+-+...-.++.|+|-.. . +.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~i~~~~gi~~v~itTNG~-l--------------l~~ 103 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVARLAALPGIEDIALTTNGL-L--------------LAR 103 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHHHHhcCCCCeEEEEeCch-h--------------HHH
Confidence 578889999999999999877633 2 2 1233343322211122677777422 1 111
Q ss_pred HHHHHHHhcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHHHhc-cccc--ccc---cchhhhHHHHHHHh
Q 021097 109 ACEASLKRLDIDCIDLYYQHRIDT---------RVPIEVTIGELKKLVEEAVQ-LEWS--LWS---RDVEAEIVPTCREL 173 (317)
Q Consensus 109 ~ve~SL~rL~~d~iDl~~lH~p~~---------~~~~~~~~~al~~l~~~~~q-~~~~--~~~---~~~~~~~~~~~~~~ 173 (317)
.-+.|.+.|+++|- +-|+..++ ...++.++++++.+++.-.. +..| +.. ...-.+++++++++
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 23456667766554 33555433 12467788888888877221 2222 221 11125789999999
Q ss_pred CCc--EEeccccccc
Q 021097 174 GIG--IVAYSPLGRG 186 (317)
Q Consensus 174 gi~--v~a~~pl~~G 186 (317)
|+. ++-+.|++.+
T Consensus 182 gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 182 GVTLRFIELMPLGEG 196 (334)
T ss_pred CCeEEEEeccCCCCC
Confidence 976 4467777654
No 69
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=29.41 E-value=3.4e+02 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=19.7
Q ss_pred hhHHHHHHHhCCcEEecccccccc
Q 021097 164 AEIVPTCRELGIGIVAYSPLGRGF 187 (317)
Q Consensus 164 ~~~~~~~~~~gi~v~a~~pl~~G~ 187 (317)
+.+.+.|+++|..|++++|..-+.
T Consensus 230 ~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 230 EKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHHhCCeEEEEcCCcHHH
Confidence 478899999999999998876553
No 70
>PLN02765 pyruvate kinase
Probab=29.15 E-value=5.8e+02 Score=25.35 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHH--HHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEI--LLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~--~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~S 113 (317)
++....++...|+++|+.|+-.+-.=. .+. .+-+.|.+...+++.|.+|+-. ++.+ +.+++.
T Consensus 205 tekD~~di~~f~~~~~vD~ia~SFVr~---a~DI~~~r~~l~~~g~~~~~IiaKIE~------------~~av-~nl~eI 268 (526)
T PLN02765 205 SEKDKEVISTWGVPNKIDFLSLSYTRH---AEDVREAREFLSSLGLSQTQIFAKIEN------------VEGL-THFDEI 268 (526)
T ss_pred cHhHHHHHHHHHHHcCCCEEEECCCCC---HHHHHHHHHHHHhcCCCCCcEEEEECC------------HHHH-HHHHHH
Confidence 566666666899999999996554332 332 3355565433346889999863 2323 344544
Q ss_pred HHhcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCcEEe
Q 021097 114 LKRLDIDCIDLYYQHRIDT--RVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 179 (317)
Q Consensus 114 L~rL~~d~iDl~~lH~p~~--~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a 179 (317)
++.- |-+++-+-|- +.+++++-.. ++.++..|+++|..||+
T Consensus 269 i~~s-----DgIMVARGDLGvEip~e~vp~~--------------------QK~iI~~c~~~gKPVI~ 311 (526)
T PLN02765 269 LQEA-----DGIILSRGNLGIDLPPEKVFLF--------------------QKAALYKCNMAGKPAVV 311 (526)
T ss_pred HHhc-----CEEEEecCccccccCHHHhHHH--------------------HHHHHHHHHHhCCCeEE
Confidence 4433 8888887654 3344443332 33555666666666654
No 71
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.04 E-value=4.4e+02 Score=23.84 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCC-cHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPH-TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASL 114 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL 114 (317)
+.++..+.++.+.+.|++.|+.-- |.. ..+...=+++++... ++-|+-+.... .+.+.. ..+-+.|
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~---------~~~~~A-~~~~~~l 200 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG---------WTPEEA-VELLREL 200 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC---------cCHHHH-HHHHHHH
Confidence 556677888889999999998643 211 112222233333122 56666665432 244332 3333455
Q ss_pred HhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH---------------------------Hhcccccccc-cchhhhH
Q 021097 115 KRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE---------------------------AVQLEWSLWS-RDVEAEI 166 (317)
Q Consensus 115 ~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~---------------------------~~q~~~~~~~-~~~~~~~ 166 (317)
+.++++ ++-.|-+..+ ++.+.+|.+. ++|+.-+.+- -..-.++
T Consensus 201 ~~~~l~-----~iEeP~~~~d----~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~ 271 (316)
T cd03319 201 AELGVE-----LIEQPVPAGD----DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRI 271 (316)
T ss_pred HhcCCC-----EEECCCCCCC----HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHH
Confidence 555444 4444533222 4444555544 2222211110 0011467
Q ss_pred HHHHHHhCCcEEeccccccc
Q 021097 167 VPTCRELGIGIVAYSPLGRG 186 (317)
Q Consensus 167 ~~~~~~~gi~v~a~~pl~~G 186 (317)
...|+++|+.++..+-+..+
T Consensus 272 ~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 272 ADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHcCCCEEEECchhhH
Confidence 88899999999887555433
No 72
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=29.03 E-value=4.4e+02 Score=23.84 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=33.5
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHhhCCCCeEeccCCCChHHHHHHH
Q 021097 224 RVNEIATRKGC------TPSQLALAWVHHQGDDVCPIPGTTKVENCNQNI 267 (317)
Q Consensus 224 ~l~~~a~~~~~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~ 267 (317)
+|.++|.+.+. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 78888888764 67888889998765 466789999999776543
No 73
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=28.56 E-value=4e+02 Score=23.26 Aligned_cols=135 Identities=23% Similarity=0.221 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHH
Q 021097 34 PKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (317)
Q Consensus 34 ~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~S 113 (317)
..++++..++++.|.+.|+.-+-..+.|- ....++|++. ..+.|+|=++++.. .....++-.--+-
T Consensus 20 ~~T~~~I~~l~~eA~~~~f~avCV~P~~V-----~~A~~~l~g~--~~~~v~tVigFP~G-------~~~t~~K~~Ea~~ 85 (228)
T COG0274 20 DATEEDIARLCAEAKEYGFAAVCVNPSYV-----PLAKEALKGS--TVVRVCTVIGFPLG-------ANTTAVKAAEARE 85 (228)
T ss_pred CCCHHHHHHHHHHHHhhCceEEEECcchH-----HHHHHHhccC--CCeEEEEecCCCCC-------CChHHHHHHHHHH
Confidence 34788999999999999988888778776 3566667662 35668888886642 2344444333344
Q ss_pred HHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHh-------cccccccccchhhhHHHHHHHhCCcEEeccc
Q 021097 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAV-------QLEWSLWSRDVEAEIVPTCRELGIGIVAYSP 182 (317)
Q Consensus 114 L~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~-------q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~p 182 (317)
.-.-|-|-||++.=-..-....++.+.+.+...++.+- -++..+++........+.|.+.|.-++=-|.
T Consensus 86 ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTST 161 (228)
T COG0274 86 AIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTST 161 (228)
T ss_pred HHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 45678999998753333233445666666666666622 2345555554445677888899999886554
No 74
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=28.37 E-value=3.4e+02 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=15.2
Q ss_pred hhHHHHHHHhCCcEEecccc
Q 021097 164 AEIVPTCRELGIGIVAYSPL 183 (317)
Q Consensus 164 ~~~~~~~~~~gi~v~a~~pl 183 (317)
+.+.+.|+++|..|++.+|.
T Consensus 165 ~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 165 KKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HHHHHHHHHhCCeEEEEcHH
Confidence 46888888888888887643
No 75
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.35 E-value=3.2e+02 Score=22.02 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHHHH-HcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 021097 40 MIALIHHAI-NSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLD 118 (317)
Q Consensus 40 ~~~~l~~A~-~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~ 118 (317)
..+++..++ +.|+..+.+.-.=. -|+++-.|+++ .-+=+.||+-.+ ........+-+.|+..|
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~t---p~e~v~aA~~~-dv~vIgvSsl~g------------~h~~l~~~lve~lre~G 91 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQT---PEEAVRAAVEE-DVDVIGVSSLDG------------GHLTLVPGLVEALREAG 91 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCC---HHHHHHHHHhc-CCCEEEEEeccc------------hHHHHHHHHHHHHHHhC
Confidence 456777777 56888887766554 68888888877 444455655544 34556788888899999
Q ss_pred CCcc
Q 021097 119 IDCI 122 (317)
Q Consensus 119 ~d~i 122 (317)
.+.|
T Consensus 92 ~~~i 95 (143)
T COG2185 92 VEDI 95 (143)
T ss_pred Ccce
Confidence 8854
No 76
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.23 E-value=1.5e+02 Score=29.51 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhcc-CCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhc-CCCcccEEEeccCCCCCCH
Q 021097 64 HTNEILLGKALKG-GMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL-DIDCIDLYYQHRIDTRVPI 136 (317)
Q Consensus 64 G~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL-~~d~iDl~~lH~p~~~~~~ 136 (317)
|.|-+-++++|-+ .+|+++.|.--.. .+ ++-+-.||+|| |+-|+.-+.+-|-.+..+.
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ 691 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSPKDPP 691 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe------------hH---HHHHHHHHHHhhCCcccceEEEEeCCCCCCh
Confidence 4577889999977 5899988765432 23 35578899999 7899998888876654443
No 77
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.89 E-value=88 Score=23.91 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCC
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGP 63 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~ 63 (317)
+...+.+....+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5567888999999999999999999863
No 78
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=27.51 E-value=4.6e+02 Score=23.61 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCCEEeCcC-------CcCCC-cHH-------HHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCH
Q 021097 39 DMIALIHHAINSGITLLDTSD-------IYGPH-TNE-------ILLGKALKGGMRERVELATKFGISFADGKREIRGDP 103 (317)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~-------~Yg~G-~sE-------~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~ 103 (317)
...++|++..++||++|=-+. ++..| .-+ +.+|+.+++ ..+-++.--+....-+ ..++
T Consensus 46 ~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~---~~iRls~HP~qf~vLn----Sp~~ 118 (275)
T PF03851_consen 46 DLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKE---NGIRLSMHPDQFTVLN----SPRE 118 (275)
T ss_dssp HHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHH---TT-EEEE---TT--TT-----SSH
T ss_pred HHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHH---cCCeEEecCCcceeCC----CCCH
Confidence 466788888899999998655 11111 112 345666554 3344554444322111 1245
Q ss_pred HHHHHHHHH------HHHhcCCCcc--cEEEeccCCCCCCHHHHHHHHHHHHHHHhccc------ccccccc--h-hhhH
Q 021097 104 AYVRAACEA------SLKRLDIDCI--DLYYQHRIDTRVPIEVTIGELKKLVEEAVQLE------WSLWSRD--V-EAEI 166 (317)
Q Consensus 104 ~~i~~~ve~------SL~rL~~d~i--Dl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~------~~~~~~~--~-~~~~ 166 (317)
+.+.++|.+ .|+.||.+.- ..+.||--....+-++ +|+.+++...+++ ..+=|-+ . -.++
T Consensus 119 ~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~---al~RF~~~~~~L~~~ir~rL~lENDd~~yt~~d~ 195 (275)
T PF03851_consen 119 EVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEA---ALERFIENFKRLPESIRKRLTLENDDKTYTVEDV 195 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHH---HHHHHHHHHHT--HHHHTTEEEE--SSS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHH---HHHHHHHHHhhCCHhhhhcEEEecCCCccCHHHH
Confidence 666666654 4788998877 7899996644433333 4444444422221 1111110 1 1479
Q ss_pred HHHHHHhCCcEE
Q 021097 167 VPTCRELGIGIV 178 (317)
Q Consensus 167 ~~~~~~~gi~v~ 178 (317)
++.|++.||.++
T Consensus 196 L~ic~~~giP~V 207 (275)
T PF03851_consen 196 LPICEKLGIPMV 207 (275)
T ss_dssp HHHHHHHT--EE
T ss_pred HHHHHHhCCCEE
Confidence 999999999986
No 79
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.43 E-value=1.4e+02 Score=17.52 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHH
Q 021097 220 KLFERVNEIATRKGCTPSQLA 240 (317)
Q Consensus 220 ~~~~~l~~~a~~~~~s~~q~a 240 (317)
+..+.+.++|++.|.|.+++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 445689999999999998854
No 80
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.28 E-value=3.7e+02 Score=22.62 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCC-Cc---HHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGP-HT---NEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACE 111 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~-G~---sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve 111 (317)
+.++.....+.|.++|..++=|+..|.. |. .-+.+.+.++. + +-.|.... .. +.+...+-++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~--~----v~ik~aGG-------ik-t~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGG--R----VGVKAAGG-------IR-TLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCC--C----ceEEEeCC-------CC-CHHHHHHHHH
Confidence 4677889999999999999999988862 21 22556666651 2 23333211 11 5666666666
Q ss_pred HHHHhcCC
Q 021097 112 ASLKRLDI 119 (317)
Q Consensus 112 ~SL~rL~~ 119 (317)
.-..|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 66667765
No 81
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.03 E-value=4.9e+02 Score=23.78 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCC------cHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHH
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPH------TNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRA 108 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G------~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~ 108 (317)
.+.++..++++.+.+.|+..|--+ | | .-.+++..+-+.....++.|+|-.. .+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~i~~~~~l~~i~itTNG~---------------ll~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVARLGKLPGLEELSLTTNGS---------------RLAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHHHHhCCCCceEEEEeChh---------------HHHH
Confidence 577889999999999999877543 3 2 1223333322211122455655421 1222
Q ss_pred HHHHHHHhcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHHHh-cccccc--cc---cchhhhHHHHHHHhC
Q 021097 109 ACEASLKRLDIDCIDLYYQHRIDTR--------VPIEVTIGELKKLVEEAV-QLEWSL--WS---RDVEAEIVPTCRELG 174 (317)
Q Consensus 109 ~ve~SL~rL~~d~iDl~~lH~p~~~--------~~~~~~~~al~~l~~~~~-q~~~~~--~~---~~~~~~~~~~~~~~g 174 (317)
.-+.|...|++++- +-|+..+++ ..++.+++.++.+++.-. .+..|. +. ...-.++++++++.|
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 34556677877765 456665432 235677888888777622 333332 11 111247899999998
Q ss_pred CcE--Eecccccc
Q 021097 175 IGI--VAYSPLGR 185 (317)
Q Consensus 175 i~v--~a~~pl~~ 185 (317)
+.+ +-+.|++.
T Consensus 184 i~~~~ie~mP~g~ 196 (329)
T PRK13361 184 LDIAFIEEMPLGE 196 (329)
T ss_pred CeEEEEecccCCC
Confidence 866 44566654
No 82
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=26.97 E-value=2.6e+02 Score=25.57 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=45.4
Q ss_pred HHHhcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHH-------------------------Hhccc---ccc--
Q 021097 113 SLKRLDIDCIDLYYQHRIDT-----RVPIEVTIGELKKLVEE-------------------------AVQLE---WSL-- 157 (317)
Q Consensus 113 SL~rL~~d~iDl~~lH~p~~-----~~~~~~~~~al~~l~~~-------------------------~~q~~---~~~-- 157 (317)
..++.| .|++-||-... +.+.+|+.+.|+++.++ +...+ ..-
T Consensus 159 ~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSan 235 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASAN 235 (403)
T ss_pred HHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccc
Confidence 345666 47777886533 45678999999999988 11111 111
Q ss_pred cccchhhhHHHHHHHhCCcEEeccccc
Q 021097 158 WSRDVEAEIVPTCRELGIGIVAYSPLG 184 (317)
Q Consensus 158 ~~~~~~~~~~~~~~~~gi~v~a~~pl~ 184 (317)
++-+. +.+.++|.++|=.|++|+++.
T Consensus 236 ldlDy-~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 236 LDLDY-ERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccCH-HHHHHHHHhcCceEEEeeccC
Confidence 12221 478999999999999998875
No 83
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.93 E-value=6.1e+02 Score=24.81 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHH-hccccccccc--ch--hhhHHHHHHHhCC
Q 021097 101 GDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEA-VQLEWSLWSR--DV--EAEIVPTCRELGI 175 (317)
Q Consensus 101 ~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~-~q~~~~~~~~--~~--~~~~~~~~~~~gi 175 (317)
.+++.+.+.++...++.|+.++ .+...+...+.+...+-++++++.- ..+.|....+ .. ..++++..++.|+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 4778888899988888887654 3333333233333444555555442 2233322111 01 3478999999998
Q ss_pred cEEec
Q 021097 176 GIVAY 180 (317)
Q Consensus 176 ~v~a~ 180 (317)
..+..
T Consensus 299 ~~v~i 303 (497)
T TIGR02026 299 VHISL 303 (497)
T ss_pred cEEEE
Confidence 76655
No 84
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.90 E-value=1.7e+02 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeCcCCcCCC
Q 021097 35 KPESDMIALIHHAINSGITLLDTSDIYGPH 64 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G 64 (317)
.+.++..++++.|.+.||+-+=..++|-.|
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 478899999999999999987766666544
No 85
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=26.76 E-value=2.4e+02 Score=27.04 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=54.5
Q ss_pred cCcceecccccCcC----CCCCCCHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCccc
Q 021097 17 VSAQGLGCMGMSAF----YGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISF 92 (317)
Q Consensus 17 vs~lglGt~~~g~~----~~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~ 92 (317)
|.+|.+|...|... .|+..+.+++.+.++.+.+.|+.-+-.==+||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 55888888877532 345556777888888888888876655556662
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCcccEEEe-ccC
Q 021097 93 ADGKREIRGDPAYVRAACEASLKRLDIDCIDLYYQ-HRI 130 (317)
Q Consensus 93 ~~~~~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~l-H~p 130 (317)
+..+.+.+.+.++..++ |+.|+|.+|.+ |-|
T Consensus 199 ------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p 230 (416)
T COG0635 199 ------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEP 230 (416)
T ss_pred ------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCC
Confidence 23466777777776664 77999999988 444
No 86
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.56 E-value=4.4e+02 Score=23.07 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=54.9
Q ss_pred HHHHhcCCCcccEEEeccCCC----CCCHHHHHHHHHHHHHH----Hhcc------cccccccch---------hhhHHH
Q 021097 112 ASLKRLDIDCIDLYYQHRIDT----RVPIEVTIGELKKLVEE----AVQL------EWSLWSRDV---------EAEIVP 168 (317)
Q Consensus 112 ~SL~rL~~d~iDl~~lH~p~~----~~~~~~~~~al~~l~~~----~~q~------~~~~~~~~~---------~~~~~~ 168 (317)
+..+++|.++|++..- .+.. .....+....+.++.++ +..+ .|++...+. -...++
T Consensus 23 ~~~~~~G~~~iEl~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~ 101 (284)
T PRK13210 23 VFAKELGFDFVEMSVD-ESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIR 101 (284)
T ss_pred HHHHHcCCCeEEEecC-CcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456899999998632 2211 01112345555555555 2211 123322221 147899
Q ss_pred HHHHhCCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCC
Q 021097 169 TCRELGIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGC 234 (317)
Q Consensus 169 ~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~ 234 (317)
.|+..|+.++..... .... . + ...+.+....+.+..+.++|+++|+
T Consensus 102 ~a~~lG~~~v~~~~~--~~~~----~-------------~-~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 102 LAQDLGIRTIQLAGY--DVYY----E-------------E-KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHhCCCEEEECCc--cccc----c-------------c-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999875211 0000 0 0 0123345666777788888888776
No 87
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=26.22 E-value=46 Score=26.49 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCCEEeCcCCc
Q 021097 42 ALIHHAINSGITLLDTSDIY 61 (317)
Q Consensus 42 ~~l~~A~~~Gi~~~DTA~~Y 61 (317)
.-+...++.|||+||-=-.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 46788999999999954333
No 88
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=25.83 E-value=1.2e+02 Score=29.46 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH--Hhcc----cccccccchhhhHHHHHHHhCCcEEec
Q 021097 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE--AVQL----EWSLWSRDVEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 107 ~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~--~~q~----~~~~~~~~~~~~~~~~~~~~gi~v~a~ 180 (317)
.++++++|+.+| ++|++++. . +..+.|.+|.++ +..+ +|.+....-+..+..+|++.||.+..+
T Consensus 53 L~~L~~~L~~~G---~~L~v~~~----g---~~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~ 122 (475)
T TIGR02766 53 LAHLDQSLRSLG---TCLVTIRS----T---DTVAALLDCVRSTGATRLFFNHLYDPVSLVRDHRAKEVLTAQGISVQSF 122 (475)
T ss_pred HHHHHHHHHHcC---CceEEEeC----C---CHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 366778888887 57776642 1 234556666666 2222 244444444567888999999988655
No 89
>PRK05826 pyruvate kinase; Provisional
Probab=25.49 E-value=6.4e+02 Score=24.61 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCEEeCcCCcCCCcHHH--HHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 021097 40 MIALIHHAINSGITLLDTSDIYGPHTNEI--LLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL 117 (317)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~--~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL 117 (317)
-...++.|++.|+.++=.+-.-. .|. .+-+.+.....+++.|..|+- +++.+ +.+++.++.
T Consensus 175 D~~~i~~ald~g~d~I~~sfV~s---aedv~~l~~~l~~~~~~~~~iiakIE------------t~eav-~nldeI~~~- 237 (465)
T PRK05826 175 DKADIKFAAEQGVDYIAVSFVRS---AEDVEEARRLLREAGCPHAKIIAKIE------------RAEAV-DNIDEIIEA- 237 (465)
T ss_pred hHHHHHHHHHCCCCEEEECCCCC---HHHHHHHHHHHHHcCCcCceEEEEEc------------CHHHH-HhHHHHHHH-
Confidence 34457899999999997776654 332 235556553333789999985 34444 577777766
Q ss_pred CCCcccEEEeccCCC
Q 021097 118 DIDCIDLYYQHRIDT 132 (317)
Q Consensus 118 ~~d~iDl~~lH~p~~ 132 (317)
+|.+++-+-|-
T Consensus 238 ----~DgImIgrgDL 248 (465)
T PRK05826 238 ----SDGIMVARGDL 248 (465)
T ss_pred ----cCEEEECcchh
Confidence 78899876653
No 90
>PRK06354 pyruvate kinase; Provisional
Probab=25.44 E-value=7.1e+02 Score=25.14 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHH--HHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNE--ILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEAS 113 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE--~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~S 113 (317)
++....+ ++.|.++|+.++-.+-.=. .| ..+.+.+.....+++.|..|+- +++.+ +.+++.
T Consensus 177 tekD~~d-i~f~~~~~vD~ia~SFVr~---~~dv~~~r~~l~~~~~~~~~iiaKIE------------t~eav-~nldeI 239 (590)
T PRK06354 177 TEKDRED-LIFGLEQGVDWIALSFVRN---PSDVLEIRELIEEHNGKHIPIIAKIE------------KQEAI-DNIDAI 239 (590)
T ss_pred CHHHHHH-HHHHHHcCCCEEEEcCCCC---HHHHHHHHHHHHHhcCCCceEEEEEC------------CHHHH-HhHHHH
Confidence 5555555 6899999999997654332 33 3456777432345788999986 33334 456666
Q ss_pred HHhcCCCcccEEEeccCCCC--CCHHHHHHHHHHH
Q 021097 114 LKRLDIDCIDLYYQHRIDTR--VPIEVTIGELKKL 146 (317)
Q Consensus 114 L~rL~~d~iDl~~lH~p~~~--~~~~~~~~al~~l 146 (317)
++. +|-+++-+-|-. .+.++.....+++
T Consensus 240 ~~~-----~DgImVaRGDLgve~g~e~v~~~qk~i 269 (590)
T PRK06354 240 LEL-----CDGLMVARGDLGVEIPAEEVPLLQKRL 269 (590)
T ss_pred HHh-----cCEEEEccchhhcccCcHHHHHHHHHH
Confidence 655 899999876542 2334444443333
No 91
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=25.35 E-value=1.4e+02 Score=26.34 Aligned_cols=77 Identities=17% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCcccCcceecccccCcCCCCCC--CHHHHHHHHHHH----HHcCCCEEeCcC--CcCCCcHHHHHHHHhcc-------
Q 021097 12 SQGLEVSAQGLGCMGMSAFYGPPK--PESDMIALIHHA----INSGITLLDTSD--IYGPHTNEILLGKALKG------- 76 (317)
Q Consensus 12 ~tg~~vs~lglGt~~~g~~~~~~~--~~~~~~~~l~~A----~~~Gi~~~DTA~--~Yg~G~sE~~lG~al~~------- 76 (317)
.+|+.+|.+||.+.+--. +|+.. ..+++.++++.| .+.|||.+--|. .|=.-.+|+...+++.+
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 689999999999866422 34431 234555665555 578999998774 33222345555555544
Q ss_pred CCCCCEEEEeccC
Q 021097 77 GMRERVELATKFG 89 (317)
Q Consensus 77 ~~R~~~~I~tK~~ 89 (317)
..+-+|.++--+.
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 1466677766654
No 92
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=25.13 E-value=3.4e+02 Score=21.32 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 021097 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDI----DCIDLYYQHRIDTR-VPIEVTIGELKKLVE 148 (317)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~----d~iDl~~lH~p~~~-~~~~~~~~al~~l~~ 148 (317)
.|=-+.|+-|++.. ..+..|++.+.++++.+.. ...|++++-.+... .+..+..+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A---------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA---------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc---------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45567788887743 4677899999999887753 45799999988643 345555566655544
No 93
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.05 E-value=2.7e+02 Score=21.07 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCC------C----CCCCCCHHH
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADG------K----REIRGDPAY 105 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~------~----~~~~~~~~~ 105 (317)
+........--.+++|.-|+-|-..|.-| .|-++---|-+ ..+++++++|+.+....+ + ...+-.-..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~~ 95 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGLK 95 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEccCCCCCCCCceeeeccCCCchhh
Confidence 44445666677789999999999999643 23444333333 467899999986543211 0 011112346
Q ss_pred HHHHHHHHHH
Q 021097 106 VRAACEASLK 115 (317)
Q Consensus 106 i~~~ve~SL~ 115 (317)
++.+||.-|.
T Consensus 96 vr~~IE~~Lg 105 (117)
T COG3215 96 VRNQIETLLG 105 (117)
T ss_pred HHHHHHHHHH
Confidence 7888888774
No 94
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=25.04 E-value=4e+02 Score=25.06 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCcEEeccccccccCCCCCCCCCCC
Q 021097 119 IDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVESF 198 (317)
Q Consensus 119 ~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~~~~~ 198 (317)
..-+|.+...+. -|-++..+...+.+--.-.|.....+..+.+++.|+++||.|+.-+ +|.
T Consensus 21 ~g~~d~l~~d~L-----aE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~----------- 81 (362)
T PF07287_consen 21 GGDVDYLVGDYL-----AERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL----------- 81 (362)
T ss_pred cCCCCEEEEecH-----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC-----------
Confidence 345565555543 2334555544443322333444333334689999999999999862 221
Q ss_pred CchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCC
Q 021097 199 SKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCT 235 (317)
Q Consensus 199 ~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s 235 (317)
+| ....+.+++++++.|++
T Consensus 82 --------np----------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 82 --------NP----------AGCADIVREIARELGLS 100 (362)
T ss_pred --------CH----------HHHHHHHHHHHHhcCCC
Confidence 11 22556888999888866
No 95
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.53 E-value=1.2e+02 Score=28.43 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCC
Q 021097 40 MIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFAD 94 (317)
Q Consensus 40 ~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~ 94 (317)
.+.+|+.|+|+|-+++|.+----- =|+.--+.-....+.-++|.+-+|.+.-+
T Consensus 98 GE~VVkacienG~~~vDISGEP~f--~E~mq~kYhd~A~ekGVYIVsaCGfDSIP 150 (423)
T KOG2733|consen 98 GEPVVKACIENGTHHVDISGEPQF--MERMQLKYHDLAKEKGVYIVSACGFDSIP 150 (423)
T ss_pred CcHHHHHHHHcCCceeccCCCHHH--HHHHHHHHHHHHHhcCeEEEeecccCCCC
Confidence 346899999999999998742111 23333333333357779999999876533
No 96
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.18 E-value=1.4e+02 Score=18.82 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCC
Q 021097 225 VNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSV 272 (317)
Q Consensus 225 l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~ 272 (317)
++.+|+..|+|++-+ ..+|+.+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 578899999998764 44555542 4556677777777666554
No 97
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.17 E-value=5.1e+02 Score=23.04 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG 62 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 62 (317)
+.+...++++...+.|++.++-.=-|.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfS 53 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYS 53 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 678888999999999999999655443
No 98
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.93 E-value=85 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccC
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG 77 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~ 77 (317)
+.+.-.++|...++.|.+.-+.|.-||- ++..|..|++..
T Consensus 14 s~EfK~~aV~~~~~~g~sv~evA~e~gI--s~~tl~~W~r~y 53 (121)
T PRK09413 14 TTQEKIAIVQQSFEPGMTVSLVARQHGV--AASQLFLWRKQY 53 (121)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHHHHHHHHHHH
Confidence 5566678999999999999999999997 999999999884
No 99
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.75 E-value=5.6e+02 Score=23.35 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=33.2
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHhhCCCCeEeccCCCChHHHHHHH
Q 021097 224 RVNEIATRKGC------TPSQLALAWVHHQGDDVCPIPGTTKVENCNQNI 267 (317)
Q Consensus 224 ~l~~~a~~~~~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~ 267 (317)
+|.++|++.+. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 78888888763 67899999996654 466789999999776544
No 100
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.62 E-value=5.3e+02 Score=23.03 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=74.8
Q ss_pred cccCceeeCCCCCcccCcceecccccCcCCCCCCCHHHHHHHHHHHHHc-CCCEEeCcCCcCC---CcHHHHHHHHhccC
Q 021097 2 AGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINS-GITLLDTSDIYGP---HTNEILLGKALKGG 77 (317)
Q Consensus 2 ~~~m~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~-Gi~~~DTA~~Yg~---G~sE~~lG~al~~~ 77 (317)
-.|+....+|...+. |+|-+||..+. +.+ ++..|++. |...+=.|----+ ...+.-+-+.|..
T Consensus 2 ~~~~d~l~i~g~~f~-SRL~lGTgky~-------s~~----~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~- 68 (267)
T CHL00162 2 NNMTDKLKIGNKSFN-SRLMLGTGKYK-------SLK----DAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDW- 68 (267)
T ss_pred CCCCCceEECCEEee-cceEEecCCCC-------CHH----HHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhch-
Confidence 345555666644444 89999997762 334 44555543 5444322210000 0022334444432
Q ss_pred CCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhc------CCCcccEEEeccCCCCC-CHHHHHHHHHHHHHH-
Q 021097 78 MRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRL------DIDCIDLYYQHRIDTRV-PIEVTIGELKKLVEE- 149 (317)
Q Consensus 78 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL------~~d~iDl~~lH~p~~~~-~~~~~~~al~~l~~~- 149 (317)
.++.+. .+.. -..+.+...+..+-..+-+ +++.|=|=.+-.+..-. +..++++|-+.|+++
T Consensus 69 --~~~~~L---PNTa------Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eG 137 (267)
T CHL00162 69 --NKLWLL---PNTA------GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKG 137 (267)
T ss_pred --hccEEC---CcCc------CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCC
Confidence 233221 1110 1234444444444444544 56766655554443322 356899999999988
Q ss_pred HhcccccccccchhhhHHHHHHHhCCcEEecccccc
Q 021097 150 AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGR 185 (317)
Q Consensus 150 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~ 185 (317)
+.-.+|-.-+. -+...+.+-|.. +--||+.
T Consensus 138 F~VlPY~~~D~----v~a~rLed~Gc~--aVMPlgs 167 (267)
T CHL00162 138 FTVLPYINADP----MLAKHLEDIGCA--TVMPLGS 167 (267)
T ss_pred CEEeecCCCCH----HHHHHHHHcCCe--EEeeccC
Confidence 55556554333 233334444444 4445543
No 101
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=23.51 E-value=4.7e+02 Score=22.73 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCcEEeccccccc
Q 021097 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRG 186 (317)
Q Consensus 107 ~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~pl~~G 186 (317)
.+.+.+.|++|++|+| ++.. ...+..-..++.+-++.--..|.++-+....+++...-+.|..++.-+.-+.|
T Consensus 75 ve~L~~~l~~l~~d~i----v~Ga---I~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~g 147 (223)
T COG2102 75 VEELKEALRRLKVDGI----VAGA---IASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEG 147 (223)
T ss_pred HHHHHHHHHhCcccEE----EEch---hhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccC
Confidence 4778888999985554 2221 22345566777777776666777766655568888888888887776666666
Q ss_pred cCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCCCHH
Q 021097 187 FFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGCTPS 237 (317)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~s~~ 237 (317)
+-. .... .++ ..+.++.+..+.++||+.++
T Consensus 148 L~~--~~lG------------r~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 148 LDE--SWLG------------RRI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred CCh--HHhC------------Ccc-------CHHHHHHHHHHHHhcCCCcc
Confidence 432 0000 001 12456688999999998773
No 102
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=77 Score=27.90 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=30.7
Q ss_pred CCCCCcccCcceecccccC------cCCCCCCCHHHHHHHHHHHHHcCC
Q 021097 10 LGSQGLEVSAQGLGCMGMS------AFYGPPKPESDMIALIHHAINSGI 52 (317)
Q Consensus 10 lg~tg~~vs~lglGt~~~g------~~~~~~~~~~~~~~~l~~A~~~Gi 52 (317)
-|+|+ +.|-..+|..++. ..|....+.+++.+++..|+++||
T Consensus 153 hGStd-~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 153 HGSTD-KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred CCCcC-ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 44443 4566667765554 237777899999999999999997
No 103
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.09 E-value=5e+02 Score=24.64 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=69.0
Q ss_pred cHHHHHHHHhcc-CCCCCEEEEeccCcccC-----CC-C--CCCCCCHHHHHHHHHHHHHhcC-CCcccEEEecc----C
Q 021097 65 TNEILLGKALKG-GMRERVELATKFGISFA-----DG-K--REIRGDPAYVRAACEASLKRLD-IDCIDLYYQHR----I 130 (317)
Q Consensus 65 ~sE~~lG~al~~-~~R~~~~I~tK~~~~~~-----~~-~--~~~~~~~~~i~~~ve~SL~rL~-~d~iDl~~lH~----p 130 (317)
-+-++-+++|+. .++..|+|+.=.|+... .| + .-+.++.+.-.-.++..|..|. ...=|+++||. |
T Consensus 105 GAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNP 184 (396)
T COG1448 105 GALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNP 184 (396)
T ss_pred hHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCC
Confidence 366777888877 46777999888775432 11 0 0011122211133444444442 23457888874 4
Q ss_pred CCCCCHHHHHHHHHHHHHH-----Hhcccccccccch--hhhHHHHHHHhCCcEEecccccc
Q 021097 131 DTRVPIEVTIGELKKLVEE-----AVQLEWSLWSRDV--EAEIVPTCRELGIGIVAYSPLGR 185 (317)
Q Consensus 131 ~~~~~~~~~~~al~~l~~~-----~~q~~~~~~~~~~--~~~~~~~~~~~gi~v~a~~pl~~ 185 (317)
.--++-.+.|..+.++.++ +.-+-|--+.... +...+..+.+.+..++..+.+..
T Consensus 185 TG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SK 246 (396)
T COG1448 185 TGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSK 246 (396)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhh
Confidence 4445567899999999998 2222222222222 23567788888887777777763
No 104
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.98 E-value=1.6e+02 Score=19.88 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCHHHHH
Q 021097 224 RVNEIATRKGCTPSQLA 240 (317)
Q Consensus 224 ~l~~~a~~~~~s~~q~a 240 (317)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998865
No 105
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=22.92 E-value=2.8e+02 Score=24.18 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCcccEEEeccCCCCCCHHH--HHHHHHHHHHH-------Hh-cccccccccch---hhhHHHHHHHh
Q 021097 107 RAACEASLKRLDIDCIDLYYQHRIDTRVPIEV--TIGELKKLVEE-------AV-QLEWSLWSRDV---EAEIVPTCREL 173 (317)
Q Consensus 107 ~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~--~~~al~~l~~~-------~~-q~~~~~~~~~~---~~~~~~~~~~~ 173 (317)
.+++=...++||+..+. |.+.-+...+.+ -...+..+-++ +| -.+||.++..- -+++.++++.-
T Consensus 19 v~affa~ak~lg~s~Ve---iRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~ac 95 (272)
T COG4130 19 VEAFFALAKRLGLSKVE---IRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAAC 95 (272)
T ss_pred HHHHHHHHHHcCcceeE---EecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhc
Confidence 35555667888866544 444322111111 12333333344 11 23577766542 25899999999
Q ss_pred CCcEEeccccccccCCCCCCCCCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCC
Q 021097 174 GIGIVAYSPLGRGFFSSGPKLVESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGC 234 (317)
Q Consensus 174 gi~v~a~~pl~~G~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~ 234 (317)
|-.-+...||..|... +. -.+ .....+.+++++.|-+++|+
T Consensus 96 GA~aLvlcPlNd~s~~-~~----~vr---------------~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 96 GAKALVLCPLNDGSWP-GT----AVR---------------REDLVEALKALKPILDEYGI 136 (272)
T ss_pred CCceEEEEeccCCCCC-Cc----ccc---------------hHHHHHHHHHhhHHHHHhCc
Confidence 9999999999876432 11 111 12345566788888887764
No 106
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.71 E-value=84 Score=21.17 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHH----HHcCCCEEeC
Q 021097 36 PESDMIALIHHA----INSGITLLDT 57 (317)
Q Consensus 36 ~~~~~~~~l~~A----~~~Gi~~~DT 57 (317)
++.++.++++.| ++.|+.++|.
T Consensus 15 ~~~tA~~IIrqAK~~lV~~G~~~Y~n 40 (59)
T PF11372_consen 15 SESTARDIIRQAKALLVQKGFSFYNN 40 (59)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 345677777776 5789999873
No 107
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.67 E-value=5.4e+02 Score=22.79 Aligned_cols=27 Identities=7% Similarity=0.260 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCcCCcC
Q 021097 36 PESDMIALIHHAINSGITLLDTSDIYG 62 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA~~Yg 62 (317)
+.+...++++...+.|+++++-.--|.
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfS 50 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFS 50 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 678889999999999999999655553
No 108
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=22.50 E-value=2.2e+02 Score=26.09 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHhCCc
Q 021097 97 REIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWSRDVEAEIVPTCRELGIG 176 (317)
Q Consensus 97 ~~~~~~~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 176 (317)
.+.+.+.+.+.+.+++.|+..|.+.-.+-.|-.++... .|..+++.|++.|+.
T Consensus 201 crrg~~~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~---------------------------~E~gL~~~a~~lg~p 253 (315)
T PRK05788 201 CRKGVSAEEIAEAVERALEALNIDPRAVKAIASITLKK---------------------------DEPGLLQLAEELGVP 253 (315)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCHHHccEEeeeeccC---------------------------CCHHHHHHHHHhCCC
Confidence 34556888899999999998887655555555443321 255799999999999
Q ss_pred EEeccc
Q 021097 177 IVAYSP 182 (317)
Q Consensus 177 v~a~~p 182 (317)
+..|++
T Consensus 254 l~~~~~ 259 (315)
T PRK05788 254 FITFSK 259 (315)
T ss_pred eEEeCH
Confidence 888754
No 109
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.25 E-value=3e+02 Score=23.70 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=15.5
Q ss_pred HhcccccccccchhhhHHHHHHHhCC
Q 021097 150 AVQLEWSLWSRDVEAEIVPTCRELGI 175 (317)
Q Consensus 150 ~~q~~~~~~~~~~~~~~~~~~~~~gi 175 (317)
+.+.-||++.+...+..+..+++.|.
T Consensus 99 iLmgYYNPIl~yG~e~~iq~ak~aGa 124 (268)
T KOG4175|consen 99 ILMGYYNPILRYGVENYIQVAKNAGA 124 (268)
T ss_pred eeeecccHHHhhhHHHHHHHHHhcCC
Confidence 44556777666555556666665553
No 110
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.25 E-value=4.8e+02 Score=22.47 Aligned_cols=94 Identities=21% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHH-----HHHHHHH
Q 021097 39 DMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYV-----RAACEAS 113 (317)
Q Consensus 39 ~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i-----~~~ve~S 113 (317)
+..++++.|.+.|+.-+-+.+.|. ....+.+... +-++-+.-++.... ...+.- ..++++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~~-~~~~~~vi~fp~g~--------~~~~~k~~~~~~~~ve~A 85 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAGS-GVKVGLVIGFPFGT--------STTEPKGYDQIVAEVEEA 85 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTTS-TSEEEEEESTTTSS--------STHHHHTCEEEHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhcc-ccccceEEEeCCCC--------CccccccccchHHHHHHH
Confidence 789999999999999998888874 2344445442 22455554543221 122222 4667776
Q ss_pred HHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHH
Q 021097 114 LKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLV 147 (317)
Q Consensus 114 L~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~ 147 (317)
.++|.|-||+++-..+..........+.+.+++
T Consensus 86 -~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~ 118 (236)
T PF01791_consen 86 -IRLGADEVDVVINYGALGSGNEDEVIEEIAAVV 118 (236)
T ss_dssp -HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHH
T ss_pred -HHcCCceeeeeccccccccccHHHHHHHHHHHH
Confidence 468999999988775544333444444444433
No 111
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.23 E-value=2e+02 Score=21.89 Aligned_cols=55 Identities=15% Similarity=0.052 Sum_probs=30.1
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHH-HhcccccccccchhhhHHHHHHHhCCcEEec
Q 021097 119 IDCIDLYYQHRIDTRVPIEVTIGELKKLVEE-AVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 180 (317)
Q Consensus 119 ~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~-~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~ 180 (317)
...+|+..+--| .+.+.+.++++.+. +--+-+..- ..+.++.+.|+++|+.++.-
T Consensus 53 p~~iDlavv~~~-----~~~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 53 PEPIDLAVVCVP-----PDKVPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp SST-SEEEE-S------HHHHHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEES
T ss_pred CCCCCEEEEEcC-----HHHHHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeC
Confidence 366777777644 45566677776666 111111111 22468999999999999863
No 112
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=22.22 E-value=2.5e+02 Score=24.83 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=10.7
Q ss_pred hHHHHHHHhCCcEEeccc
Q 021097 165 EIVPTCRELGIGIVAYSP 182 (317)
Q Consensus 165 ~~~~~~~~~gi~v~a~~p 182 (317)
.++..|+..|+..+.+-|
T Consensus 60 ~~i~a~~~~g~~~lVRvp 77 (256)
T PRK10558 60 PQLMALKGSASAPVVRVP 77 (256)
T ss_pred HHHHHHhhcCCCcEEECC
Confidence 455566666666666543
No 113
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=45 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=13.0
Q ss_pred cCCCEEeCcCCcCC
Q 021097 50 SGITLLDTSDIYGP 63 (317)
Q Consensus 50 ~Gi~~~DTA~~Yg~ 63 (317)
+|.+||+|++.||.
T Consensus 199 ~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 199 NGKRYFECAPKYGG 212 (234)
T ss_pred cceEeeecCCccCC
Confidence 69999999999995
No 114
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=21.81 E-value=4.1e+02 Score=20.98 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHh----cCC----------CcccEEEeccC--CCCCCHHHHHHHHHHHHH
Q 021097 102 DPAYVRAACEASLKR----LDI----------DCIDLYYQHRI--DTRVPIEVTIGELKKLVE 148 (317)
Q Consensus 102 ~~~~i~~~ve~SL~r----L~~----------d~iDl~~lH~p--~~~~~~~~~~~al~~l~~ 148 (317)
.+..|++.+.++.+. |.. .++|++++..+ ....+.++.-..|..|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 566777777777766 332 24799999987 333346666666665544
No 115
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=96 Score=28.72 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCCcccCcceecccccCcC-CCCCCCHH---HHHHHHHHHHHcCCC--EEeCcCCcC
Q 021097 12 SQGLEVSAQGLGCMGMSAF-YGPPKPES---DMIALIHHAINSGIT--LLDTSDIYG 62 (317)
Q Consensus 12 ~tg~~vs~lglGt~~~g~~-~~~~~~~~---~~~~~l~~A~~~Gi~--~~DTA~~Yg 62 (317)
+-|+.-.+|.||+-.+|.. |...+..+ .+.++|+.-.+.|++ |+|++=...
T Consensus 77 ~~gfp~e~liLGGDHLGPN~Wq~~pA~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA 133 (426)
T COG4573 77 KLGFPRERLILGGDHLGPNPWQHLPAAEAMAKADDLVKAYVAAGFTKIHLDASMSCA 133 (426)
T ss_pred HhCCcHHHHhccCCcCCCCccccCCHHHHHHHHHHHHHHHHHcCceeeecccccccC
Confidence 3466678999999999865 66543222 366888888999999 788775543
No 116
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.61 E-value=6e+02 Score=22.91 Aligned_cols=184 Identities=20% Similarity=0.149 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 021097 41 IALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKREIRGDPAYVRAACEASLKRLDID 120 (317)
Q Consensus 41 ~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~SL~rL~~d 120 (317)
.+..+.|-+.|++.+|+.=-|=. +....+-+..++ -..++|.-|-++....|-..+......+....+ -++.|..+
T Consensus 78 ~~~~~~~~~~gl~viDaTCP~V~-kv~~~v~~~~~~--Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~-d~~~l~~~ 153 (280)
T TIGR00216 78 PEVREELEKKGLEVIDATCPLVT-KVHNAVKKYAKE--GYHVILIGKKNHPEVIGTRGYAPDKAIVVETLE-DLENFKVE 153 (280)
T ss_pred HHHHHHHHHCCCeEEeCCCcccH-HHHHHHHHHHhC--CCEEEEEeCCCCCeeeeeccCcCCCEEEECCHH-HHHhCCCC
Confidence 35777888999999997654421 123333333333 344666666554433221101111111222222 23444321
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHHHhcccccccc------cchhhhHHHHHHHhCCcEEeccccccccCCCCCCC
Q 021097 121 CIDLYYQHRIDTRVPIEVTIGELKKLVEEAVQLEWSLWS------RDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKL 194 (317)
Q Consensus 121 ~iDl~~lH~p~~~~~~~~~~~al~~l~~~~~q~~~~~~~------~~~~~~~~~~~~~~gi~v~a~~pl~~G~l~~~~~~ 194 (317)
. .+.++-. .. ...++...-.+.|++..-+.+...++ ..-++.+.+.+++-++-++.- |.-+
T Consensus 154 ~-~v~vvsQ-TT-~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVG-----g~nS----- 220 (280)
T TIGR00216 154 D-LLGVVSQ-TT-LSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIG-----GKNS----- 220 (280)
T ss_pred C-cEEEEEc-CC-CcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEEC-----CCCC-----
Confidence 0 1222221 11 12333333334444443111111111 111356888888877666652 2111
Q ss_pred CCCCCchhhhhcccccchhhHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHhhCCCCeEeccCCCChHHHHHHH
Q 021097 195 VESFSKEDFRQYLPRFQAENLEHNKKLFERVNEIATRKGC------TPSQLALAWVHHQGDDVCPIPGTTKVENCNQNI 267 (317)
Q Consensus 195 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~a~~~~~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~ 267 (317)
.. -.+|.++|++++. ++.++-..|.-... ...+..|+|+|+.+-+.+
T Consensus 221 sN-------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 221 SN-------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEEV 273 (280)
T ss_pred ch-------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHHH
Confidence 00 1278888988863 67899999997765 467789999999875543
No 117
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=21.59 E-value=91 Score=27.39 Aligned_cols=49 Identities=10% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH---hhCCCCeEeccCCCChHHHHHHHh
Q 021097 219 KKLFERVNEIATRKGCTPSQLALAWV---HHQGDDVCPIPGTTKVENCNQNIK 268 (317)
Q Consensus 219 ~~~~~~l~~~a~~~~~s~~q~al~~~---l~~~~v~~vi~g~~~~~~l~en~~ 268 (317)
.+++.++..||..|++++.++++.|- +++..- ..-+...+.+.+++.+.
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHH
Confidence 46788999999999999999999985 444431 22355666666655554
No 118
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=21.50 E-value=78 Score=25.01 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCEEeCc
Q 021097 41 IALIHHAINSGITLLDTS 58 (317)
Q Consensus 41 ~~~l~~A~~~Gi~~~DTA 58 (317)
...+..+++.|+|+||-=
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 457788999999999954
No 119
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=21.37 E-value=3.4e+02 Score=20.81 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCeEeccCCCChHHHHHHHhhcCCCCCHHHHHHHHhhhccC
Q 021097 220 KLFERVNEIATRKGCTPSQLALAWVHHQGDDVCPIPGTTKVENCNQNIKALSVKLTLEEMVELESIASAD 289 (317)
Q Consensus 220 ~~~~~l~~~a~~~~~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~en~~a~~~~Lt~ee~~~l~~~~~~~ 289 (317)
+.+..+.+...+++++..++|.= +=...++.+.+...+..+...+++++++.|-.....+
T Consensus 55 e~i~~~~~~L~~~~L~k~E~~~i----------~Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~ 114 (118)
T smart00657 55 EIVRAVRTLLKSKKLHKFEIAQL----------GNLRPETAEEAQLLIPSLEERIDEEELEELLDDLSSL 114 (118)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHH----------hCCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHh
Confidence 34446666666788888875532 2234568899999998888789999998888776553
No 120
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=21.17 E-value=1.1e+02 Score=31.86 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEe----CcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCccc
Q 021097 35 KPESDMIALIHHAINSGITLLD----TSDIYGPHTNEILLGKALKGGMRERVELATKFGISF 92 (317)
Q Consensus 35 ~~~~~~~~~l~~A~~~Gi~~~D----TA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~ 92 (317)
.+++..+..|+..++.|+.-+- .+..|.+ -|..+|+.-++..-..+-+++|+.+.-
T Consensus 165 ~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~--HE~~v~kiA~e~GF~~vSLSs~l~PMi 224 (1247)
T KOG1939|consen 165 VDEEALRQDLKELYDKGVKSIAVVLLHSYTYPD--HELEVGKIAKEIGFSHVSLSSKLMPMI 224 (1247)
T ss_pred CCHHHHHHHHHHHHHcCcceEeeeeeccccCCc--HHHHHHHHHHHhCccceechhccccce
Confidence 4788889999999999999554 4445555 899999998887778888999998653
No 121
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.06 E-value=1.3e+02 Score=23.91 Aligned_cols=80 Identities=19% Similarity=0.100 Sum_probs=52.9
Q ss_pred cceecccccCcCCCCCCCHHHHHHHHHHHHHcCCCE-EeCcCCcCCCcHHHHHHHHhccCCCCCEEEEeccCcccCCCCC
Q 021097 19 AQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITL-LDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISFADGKR 97 (317)
Q Consensus 19 ~lglGt~~~g~~~~~~~~~~~~~~~l~~A~~~Gi~~-~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 97 (317)
+|-+||.++ -++.++++..+.|+++++.|-+- ++-.+. ..++..++-+-|+....
T Consensus 2 r~~~eTfSy----LPpLTdeqI~kQI~Y~i~~GW~p~iEft~~---------------~~~~~~YW~MWkLPMFg----- 57 (138)
T CHL00130 2 RLTQGTFSF----LPDLTDQQIEKQIQYAISKGWALNVEWTDD---------------PHPRNSYWELWGLPLFD----- 57 (138)
T ss_pred ceeeceecc----CCCCCHHHHHHHHHHHHhcCCeEEEEecCC---------------CCcCccEEeeeCCccCC-----
Confidence 467888875 34568899999999999999762 332211 11467788888876431
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCcccE
Q 021097 98 EIRGDPAYVRAACEASLKRLDIDCIDL 124 (317)
Q Consensus 98 ~~~~~~~~i~~~ve~SL~rL~~d~iDl 124 (317)
.-++..|...|++..+.---.||=+
T Consensus 58 --~tD~~~Vl~Ei~~CrkayP~~yIRl 82 (138)
T CHL00130 58 --VKDPAAVMFEINECRKQKPNGYIKV 82 (138)
T ss_pred --CCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 2366777777777766655444443
No 122
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.98 E-value=1.1e+02 Score=17.44 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCC
Q 021097 38 SDMIALIHHAINSGIT 53 (317)
Q Consensus 38 ~~~~~~l~~A~~~Gi~ 53 (317)
++...++..|.+.|+.
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5678899999999975
No 123
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=20.96 E-value=1.1e+02 Score=19.19 Aligned_cols=21 Identities=24% Similarity=-0.004 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHH
Q 021097 224 RVNEIATRKGCTPSQLALAWV 244 (317)
Q Consensus 224 ~l~~~a~~~~~s~~q~al~~~ 244 (317)
.++.+.++.|+|..++|-..-
T Consensus 6 ~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHhC
Confidence 556666667777777775543
No 124
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.73 E-value=1.9e+02 Score=25.74 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH------HhcccccccccchhhhHHHHHHHhCCc
Q 021097 137 EVTIGELKKLVEE------AVQLEWSLWSRDVEAEIVPTCRELGIG 176 (317)
Q Consensus 137 ~~~~~al~~l~~~------~~q~~~~~~~~~~~~~~~~~~~~~gi~ 176 (317)
+..++.+++++++ +.+.-||++.+...+..++.|++.|+.
T Consensus 72 ~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvd 117 (259)
T PF00290_consen 72 EKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVD 117 (259)
T ss_dssp HHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCC
Confidence 3456666777744 566677777665455788888887764
No 125
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.49 E-value=4.8e+02 Score=23.34 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHH-HhcccccccccchhhhHHHHHHHhCCcEEecc
Q 021097 103 PAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEE-AVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 181 (317)
Q Consensus 103 ~~~i~~~ve~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~al~~l~~~-~~q~~~~~~~~~~~~~~~~~~~~~gi~v~a~~ 181 (317)
...+.+.+++--+.+|. ...+ ...+...+.......++.+..+ +.-+-.++.+...-...++.+++.||.|+.+.
T Consensus 48 ~~~~~~g~~~~a~~~g~--~~~~--~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d 123 (322)
T COG1879 48 FQAVRKGAEAAAKKLGV--VVAV--VIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVD 123 (322)
T ss_pred HHHHHHHHHHHHHHcCC--cEEE--EecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEe
Confidence 34577889999999996 2222 2223334456677888887655 55566677777666789999999999999875
Q ss_pred cc
Q 021097 182 PL 183 (317)
Q Consensus 182 pl 183 (317)
.-
T Consensus 124 ~~ 125 (322)
T COG1879 124 SD 125 (322)
T ss_pred cC
Confidence 43
No 126
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.37 E-value=3.2e+02 Score=24.45 Aligned_cols=76 Identities=9% Similarity=0.198 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeCc----------CCcCCCcHHHHHHHHhccCCCC-CEEEEeccCcccCCCCCCCCCCHH
Q 021097 36 PESDMIALIHHAINSGITLLDTS----------DIYGPHTNEILLGKALKGGMRE-RVELATKFGISFADGKREIRGDPA 104 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DTA----------~~Yg~G~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~ 104 (317)
+.++..+..+.+.+.|+..||-- ..|+. +.+.+-+.++...+. ++-|.-|+.+.. +
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~--~~~~~~eiv~~vr~~~~~Pv~vKl~~~~-----------~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT--DPEAVAEIVKAVKKATDVPVIVKLTPNV-----------T 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC--CHHHHHHHHHHHHhccCCCEEEEeCCCc-----------h
Confidence 46778888888888999999851 22332 566666666653222 577888876431 1
Q ss_pred HHHHHHHHHHHhcCCCcccEE
Q 021097 105 YVRAACEASLKRLDIDCIDLY 125 (317)
Q Consensus 105 ~i~~~ve~SL~rL~~d~iDl~ 125 (317)
.+ ..+-+.+...|.|.|++.
T Consensus 167 ~~-~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 167 DI-VEIARAAEEAGADGLTLI 186 (296)
T ss_pred hH-HHHHHHHHHcCCCEEEEE
Confidence 22 233345677888777653
No 127
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.30 E-value=3.3e+02 Score=22.78 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeCcCCcCCCcHHHHHHHHhcc----CCCCCEEEEeccCcccCCCCCCCCCCHHHHHHHHHH
Q 021097 37 ESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG----GMRERVELATKFGISFADGKREIRGDPAYVRAACEA 112 (317)
Q Consensus 37 ~~~~~~~l~~A~~~Gi~~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~i~~~ve~ 112 (317)
+.+..++|..- +.-+-.+|+..+...-.-++.+-.+++. .|.-.|++++-+......-........+..++.+++
T Consensus 48 e~~~a~~ia~~-~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~ 126 (178)
T PF14606_consen 48 EPEVADLIAEI-DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALRE 126 (178)
T ss_dssp -HHHHHHHHHS---SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHH
T ss_pred CHHHHHHHhcC-CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHH
Confidence 34455555433 5566666666654432233444444433 356678888877654321111122345666777777
Q ss_pred HHHhcC-CCcccEEEeccCC
Q 021097 113 SLKRLD-IDCIDLYYQHRID 131 (317)
Q Consensus 113 SL~rL~-~d~iDl~~lH~p~ 131 (317)
..+.|. -..=+|++|+..+
T Consensus 127 ~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 127 AVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHcCCCcEEEeCchh
Confidence 777772 2245788888664
No 128
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=20.22 E-value=5.9e+02 Score=23.01 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHhcC-----CCcccEEEe------ccC--CCCCCHHHHHHHHHHHHHH----Hhcccccccccch-
Q 021097 101 GDPAYVRAACEASLKRLD-----IDCIDLYYQ------HRI--DTRVPIEVTIGELKKLVEE----AVQLEWSLWSRDV- 162 (317)
Q Consensus 101 ~~~~~i~~~ve~SL~rL~-----~d~iDl~~l------H~p--~~~~~~~~~~~al~~l~~~----~~q~~~~~~~~~~- 162 (317)
.+++..+++|...|+-+| ..-=|-++| |.| .+.+..-+++.|+.+++++ .+... ++...+.
T Consensus 11 ~syk~~r~sv~~~lel~gg~~~~i~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~vgd-~pg~~st~ 89 (293)
T COG2006 11 ESYKDTRKSVRTVLELLGGLEAFISPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVVGD-SPGFGSTS 89 (293)
T ss_pred CCcHHHHHHHHHHHHHccccccccCCCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCCcceEec-CCCCccHH
Confidence 356689999999999998 222333443 233 2223345788888888888 33333 3332221
Q ss_pred ----hhhHHHHHHHhCCcEEecc
Q 021097 163 ----EAEIVPTCRELGIGIVAYS 181 (317)
Q Consensus 163 ----~~~~~~~~~~~gi~v~a~~ 181 (317)
..++.+.|++.|+.++.+.
T Consensus 90 ~vlk~~Gi~dla~~~~~~iv~F~ 112 (293)
T COG2006 90 GVLKTTGILDLAEALGLEIVNFD 112 (293)
T ss_pred HHHHHhCHHHHHHHcCCceeeec
Confidence 2489999999999998876
No 129
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=20.21 E-value=4.2e+02 Score=23.54 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeC---cCCcCCC----cHHHHHHHHhccCCC-CCEEEEeccCcccCCCCCCCCCCHHHHH
Q 021097 36 PESDMIALIHHAINSGITLLDT---SDIYGPH----TNEILLGKALKGGMR-ERVELATKFGISFADGKREIRGDPAYVR 107 (317)
Q Consensus 36 ~~~~~~~~l~~A~~~Gi~~~DT---A~~Yg~G----~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~i~ 107 (317)
+.++..+..+.+.+.|+..|+. ++....+ ...+.+.+.++...+ -++-|+.|+... .+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------FDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------CCHHHHH
Confidence 4567788888888889998884 2222221 234555555554211 146678888753 2344444
Q ss_pred HHHHHHHHhcCCCcccEEEecc
Q 021097 108 AACEASLKRLDIDCIDLYYQHR 129 (317)
Q Consensus 108 ~~ve~SL~rL~~d~iDl~~lH~ 129 (317)
+.++ .|...|.| .+.+|+
T Consensus 180 ~~a~-~l~~~Gad---~i~~~~ 197 (289)
T cd02810 180 ELAK-AAERAGAD---GLTAIN 197 (289)
T ss_pred HHHH-HHHHcCCC---EEEEEc
Confidence 3333 45666754 445553
Done!