Query 021098
Match_columns 317
No_of_seqs 217 out of 759
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.1 2.5E-10 5.4E-15 86.1 7.1 48 246-293 3-50 (65)
2 KOG3584 cAMP response element 99.1 1.2E-10 2.6E-15 111.2 6.7 58 240-297 283-341 (348)
3 KOG4343 bZIP transcription fac 99.1 2.4E-10 5.3E-15 116.2 8.6 52 241-292 274-325 (655)
4 PF00170 bZIP_1: bZIP transcri 99.0 1.3E-09 2.8E-14 82.0 7.0 48 246-293 3-50 (64)
5 KOG4005 Transcription factor X 98.9 1.6E-09 3.4E-14 101.4 6.3 62 230-293 53-114 (292)
6 PF07716 bZIP_2: Basic region 98.9 4.9E-09 1.1E-13 76.8 7.4 47 246-293 3-49 (54)
7 KOG0709 CREB/ATF family transc 98.8 3.8E-09 8.2E-14 106.2 5.2 52 242-293 245-296 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.6 6.6E-06 1.4E-10 66.4 -1.9 49 243-291 25-73 (92)
9 KOG0837 Transcriptional activa 96.9 0.0025 5.5E-08 60.9 7.1 61 231-291 188-249 (279)
10 KOG4571 Activating transcripti 96.4 0.0099 2.1E-07 57.6 7.3 51 246-296 224-276 (294)
11 KOG3119 Basic region leucine z 96.2 0.021 4.5E-07 54.6 8.1 53 241-293 187-239 (269)
12 KOG4196 bZIP transcription fac 95.2 0.1 2.2E-06 45.5 7.7 49 244-292 49-97 (135)
13 KOG3863 bZIP transcription fac 93.7 0.049 1.1E-06 57.5 3.1 45 248-292 490-534 (604)
14 KOG1414 Transcriptional activa 86.5 0.088 1.9E-06 52.8 -2.7 64 233-297 270-333 (395)
15 PF01166 TSC22: TSC-22/dip/bun 81.4 2.6 5.6E-05 32.2 4.0 23 269-291 21-43 (59)
16 KOG1414 Transcriptional activa 79.4 0.099 2.1E-06 52.4 -5.5 49 243-291 149-201 (395)
17 PF07558 Shugoshin_N: Shugoshi 79.0 2 4.3E-05 30.9 2.6 42 250-292 3-44 (46)
18 PF05812 Herpes_BLRF2: Herpesv 74.0 5 0.00011 34.5 4.1 26 267-292 1-26 (118)
19 PHA03162 hypothetical protein; 72.3 2.6 5.6E-05 37.0 2.0 27 266-292 10-36 (135)
20 PHA03155 hypothetical protein; 70.2 5.4 0.00012 34.2 3.5 24 269-292 8-31 (115)
21 KOG3119 Basic region leucine z 65.0 33 0.00071 32.9 8.1 57 237-293 186-246 (269)
22 KOG4797 Transcriptional regula 64.5 9.2 0.0002 32.8 3.7 24 268-291 73-96 (123)
23 PRK00888 ftsB cell division pr 58.9 25 0.00054 29.2 5.3 26 267-292 32-57 (105)
24 PF04977 DivIC: Septum formati 58.8 29 0.00063 26.0 5.3 26 267-292 22-47 (80)
25 PF12808 Mto2_bdg: Micro-tubul 56.0 28 0.00061 25.9 4.6 25 272-296 25-49 (52)
26 PF08172 CASP_C: CASP C termin 55.6 27 0.00058 33.4 5.6 21 271-291 95-115 (248)
27 PF03980 Nnf1: Nnf1 ; InterPr 49.8 31 0.00068 28.1 4.5 27 267-293 78-104 (109)
28 PRK10884 SH3 domain-containing 49.3 98 0.0021 28.8 8.1 17 274-290 130-146 (206)
29 PF01166 TSC22: TSC-22/dip/bun 48.9 34 0.00073 26.2 4.1 28 270-297 15-42 (59)
30 KOG1318 Helix loop helix trans 47.8 67 0.0015 33.1 7.4 54 244-297 238-319 (411)
31 KOG2829 E2F-like protein [Tran 44.8 55 0.0012 32.5 5.9 34 242-283 134-167 (326)
32 PF14197 Cep57_CLD_2: Centroso 44.2 1.2E+02 0.0026 23.5 6.7 41 249-289 27-67 (69)
33 TIGR02209 ftsL_broad cell divi 44.1 81 0.0018 24.2 5.8 26 267-292 29-54 (85)
34 PF08781 DP: Transcription fac 44.0 1.1E+02 0.0024 27.1 7.3 27 264-290 17-46 (142)
35 KOG4005 Transcription factor X 42.5 1.1E+02 0.0024 29.7 7.5 52 241-292 66-120 (292)
36 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.2 1.8E+02 0.004 24.6 8.2 46 248-293 84-129 (132)
37 PF06156 DUF972: Protein of un 40.2 41 0.00089 28.2 3.8 22 271-292 24-45 (107)
38 PF12709 Kinetocho_Slk19: Cent 40.1 61 0.0013 26.6 4.7 23 271-293 51-73 (87)
39 PF06698 DUF1192: Protein of u 40.0 43 0.00093 25.5 3.5 21 271-291 23-43 (59)
40 KOG1103 Predicted coiled-coil 38.1 83 0.0018 32.3 6.2 47 245-294 111-157 (561)
41 PF14077 WD40_alt: Alternative 38.0 28 0.0006 25.6 2.1 21 269-289 18-38 (48)
42 PF02183 HALZ: Homeobox associ 37.9 74 0.0016 22.8 4.3 21 272-292 15-35 (45)
43 PF07716 bZIP_2: Basic region 37.4 1.6E+02 0.0034 21.2 6.2 26 266-291 29-54 (54)
44 PF06785 UPF0242: Uncharacteri 36.9 48 0.001 33.6 4.3 26 265-290 197-222 (401)
45 PF08563 P53_TAD: P53 transact 36.4 24 0.00053 22.7 1.4 19 88-106 4-22 (25)
46 PF07047 OPA3: Optic atrophy 3 35.7 72 0.0016 27.4 4.7 39 246-290 95-133 (134)
47 smart00243 GAS2 Growth-Arrest- 35.6 18 0.00039 28.8 0.9 12 125-136 55-66 (73)
48 cd07429 Cby_like Chibby, a nuc 35.5 58 0.0013 27.7 4.0 18 277-294 80-97 (108)
49 PF06305 DUF1049: Protein of u 34.9 53 0.0011 24.2 3.3 12 277-288 56-67 (68)
50 PF05266 DUF724: Protein of un 34.7 63 0.0014 29.6 4.5 74 244-317 106-190 (190)
51 PF14645 Chibby: Chibby family 33.9 61 0.0013 27.6 3.9 21 274-294 76-96 (116)
52 KOG3650 Predicted coiled-coil 33.4 88 0.0019 26.6 4.7 31 268-298 69-104 (120)
53 PRK13169 DNA replication intia 33.3 66 0.0014 27.3 4.0 23 269-291 29-51 (110)
54 PRK13169 DNA replication intia 33.1 63 0.0014 27.4 3.9 26 269-294 22-47 (110)
55 PF06005 DUF904: Protein of un 33.0 91 0.002 24.4 4.5 13 278-290 41-53 (72)
56 KOG0288 WD40 repeat protein Ti 32.0 1.6E+02 0.0035 30.7 7.2 24 268-291 47-70 (459)
57 PF05377 FlaC_arch: Flagella a 31.9 74 0.0016 24.0 3.6 19 274-292 12-30 (55)
58 PF01486 K-box: K-box region; 31.2 1.7E+02 0.0037 23.5 6.0 24 269-292 75-98 (100)
59 KOG0163 Myosin class VI heavy 30.9 1.7E+02 0.0037 33.0 7.5 35 253-287 960-995 (1259)
60 cd08533 SAM_PNT-ETS-1,2 Steril 30.4 26 0.00056 27.5 1.0 16 123-138 39-54 (71)
61 PRK09413 IS2 repressor TnpA; R 30.1 79 0.0017 26.3 4.0 25 271-295 80-104 (121)
62 cd08757 SAM_PNT_ESE Sterile al 29.9 28 0.0006 26.8 1.1 17 122-138 38-54 (68)
63 COG5509 Uncharacterized small 29.5 79 0.0017 24.5 3.5 22 270-291 26-47 (65)
64 cd08531 SAM_PNT-ERG_FLI-1 Ster 29.3 29 0.00063 27.4 1.2 17 123-139 41-57 (75)
65 PF08232 Striatin: Striatin fa 29.3 2.5E+02 0.0055 24.2 7.1 42 252-293 15-56 (134)
66 KOG4739 Uncharacterized protei 29.2 3.8E+02 0.0082 25.7 8.7 32 245-276 92-123 (233)
67 PRK06569 F0F1 ATP synthase sub 29.2 3.5E+02 0.0076 24.2 8.1 50 242-291 35-84 (155)
68 PF11932 DUF3450: Protein of u 29.0 3.8E+02 0.0082 25.0 8.7 38 253-290 61-98 (251)
69 PF12999 PRKCSH-like: Glucosid 28.6 4.1E+02 0.0089 24.4 8.6 31 262-292 139-169 (176)
70 PRK09413 IS2 repressor TnpA; R 28.2 1.1E+02 0.0023 25.5 4.5 24 271-294 73-96 (121)
71 PF15397 DUF4618: Domain of un 28.2 2.8E+02 0.0061 26.9 7.8 41 252-293 184-224 (258)
72 PF02370 M: M protein repeat; 28.2 1.3E+02 0.0028 18.6 3.6 17 272-288 4-20 (21)
73 PRK13729 conjugal transfer pil 28.1 2.3E+02 0.005 29.9 7.6 25 269-293 97-121 (475)
74 cd08203 SAM_PNT Sterile alpha 28.1 31 0.00067 26.2 1.1 17 122-138 36-52 (66)
75 PF05103 DivIVA: DivIVA protei 27.8 1E+02 0.0022 25.3 4.3 24 269-292 25-48 (131)
76 PF13863 DUF4200: Domain of un 27.7 3.4E+02 0.0074 22.2 8.1 43 250-292 62-104 (126)
77 PRK05759 F0F1 ATP synthase sub 27.3 3.9E+02 0.0084 22.7 8.8 50 242-291 29-78 (156)
78 PF12709 Kinetocho_Slk19: Cent 27.1 1.2E+02 0.0026 24.9 4.4 28 266-293 39-66 (87)
79 TIGR00993 3a0901s04IAP86 chlor 27.1 1.1E+02 0.0025 33.8 5.5 27 255-281 417-443 (763)
80 TIGR02894 DNA_bind_RsfA transc 26.9 1.9E+02 0.0042 26.2 6.0 29 265-293 107-135 (161)
81 PF06156 DUF972: Protein of un 26.7 99 0.0022 25.9 4.0 26 267-292 27-52 (107)
82 KOG4797 Transcriptional regula 26.0 1.3E+02 0.0027 26.0 4.4 27 269-295 67-93 (123)
83 cd08540 SAM_PNT-ERG Sterile al 25.5 37 0.00081 26.8 1.2 17 123-139 41-57 (75)
84 cd05030 calgranulins Calgranul 24.9 42 0.00091 26.4 1.4 29 95-136 49-77 (88)
85 COG1792 MreC Cell shape-determ 24.7 2E+02 0.0043 27.8 6.2 23 270-292 84-106 (284)
86 PRK15078 polysaccharide export 24.7 65 0.0014 32.4 3.0 63 81-143 119-208 (379)
87 TIGR03752 conj_TIGR03752 integ 24.3 97 0.0021 32.5 4.2 20 271-290 75-94 (472)
88 PF13851 GAS: Growth-arrest sp 24.1 4.5E+02 0.0099 24.1 8.2 45 248-292 72-116 (201)
89 PF10473 CENP-F_leu_zip: Leuci 24.1 3.4E+02 0.0074 23.9 7.0 50 240-290 24-73 (140)
90 PF04999 FtsL: Cell division p 24.0 2.4E+02 0.0053 22.3 5.7 23 270-292 43-65 (97)
91 PRK09174 F0F1 ATP synthase sub 23.9 5.7E+02 0.012 23.5 8.8 48 242-289 78-125 (204)
92 PF06005 DUF904: Protein of un 23.9 1.3E+02 0.0029 23.5 4.0 24 270-293 26-49 (72)
93 CHL00118 atpG ATP synthase CF0 23.6 4.8E+02 0.011 22.5 8.7 49 242-290 47-95 (156)
94 COG5562 Phage envelope protein 23.4 40 0.00086 29.8 1.0 17 125-141 87-106 (137)
95 KOG1962 B-cell receptor-associ 23.3 3.1E+02 0.0066 26.0 6.9 45 249-293 166-210 (216)
96 PF13094 CENP-Q: CENP-Q, a CEN 23.2 3.8E+02 0.0083 23.2 7.2 39 253-291 46-84 (160)
97 PRK14474 F0F1 ATP synthase sub 23.2 5.5E+02 0.012 24.3 8.8 47 244-290 32-78 (250)
98 PRK13922 rod shape-determining 23.1 2.2E+02 0.0048 26.7 6.1 7 275-281 82-88 (276)
99 PF12808 Mto2_bdg: Micro-tubul 23.1 1.8E+02 0.0039 21.7 4.3 41 250-290 10-50 (52)
100 PRK13454 F0F1 ATP synthase sub 23.0 5E+02 0.011 23.2 8.1 45 244-288 58-102 (181)
101 KOG0709 CREB/ATF family transc 22.9 2E+02 0.0043 30.3 6.0 50 242-291 249-308 (472)
102 PF06673 L_lactis_ph-MCP: Lact 22.5 92 0.002 29.8 3.3 23 271-293 20-42 (347)
103 cd08532 SAM_PNT-PDEF-like Ster 22.5 44 0.00095 26.5 1.0 51 88-138 4-59 (76)
104 PF06936 Selenoprotein_S: Sele 22.3 3.4E+02 0.0074 25.1 6.9 32 256-290 81-112 (190)
105 PF09726 Macoilin: Transmembra 22.3 2.9E+02 0.0062 30.4 7.4 51 242-296 507-573 (697)
106 cd04405 RhoGAP_BRCC3-like RhoG 22.2 40 0.00086 32.3 0.9 15 94-108 1-15 (235)
107 TIGR02449 conserved hypothetic 21.6 1.6E+02 0.0035 22.9 3.9 21 273-293 25-45 (65)
108 PF09727 CortBP2: Cortactin-bi 21.5 3.3E+02 0.0072 25.4 6.7 19 278-296 136-154 (192)
109 PF10669 Phage_Gp23: Protein g 21.4 3.9E+02 0.0084 22.8 6.4 42 247-292 54-95 (121)
110 KOG4571 Activating transcripti 21.3 7.7E+02 0.017 24.5 9.4 47 243-292 226-278 (294)
111 PRK00888 ftsB cell division pr 20.6 1.5E+02 0.0032 24.6 3.9 17 267-283 46-62 (105)
112 PF05377 FlaC_arch: Flagella a 20.6 1.7E+02 0.0037 22.1 3.8 22 271-292 2-23 (55)
113 PF10482 CtIP_N: Tumour-suppre 20.5 3.9E+02 0.0084 23.2 6.4 28 265-292 92-119 (120)
114 PF06311 NumbF: NUMB domain; 20.2 33 0.00071 28.2 -0.1 20 78-97 11-30 (88)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.10 E-value=2.5e-10 Score=86.08 Aligned_cols=48 Identities=56% Similarity=0.747 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 246 ~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|..+..
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999998863
No 2
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.10 E-value=1.2e-10 Score=111.20 Aligned_cols=58 Identities=34% Similarity=0.566 Sum_probs=50.8
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Q 021098 240 DMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK-ELEKM 297 (317)
Q Consensus 240 ~~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~-elE~~ 297 (317)
...|+...||+-|++||||+|+.+|+|||+|+++||++|+.||.+|+.|-+|- -|.++
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999999999999999997763 34444
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.09 E-value=2.4e-10 Score=116.17 Aligned_cols=52 Identities=46% Similarity=0.625 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 241 MIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 241 ~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+|.++-||+.|||||||||..||+|||+|+..||.++..|.+||+.|++||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~EN 325 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKEN 325 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677899999999999999999999999999999999999999999999997
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.99 E-value=1.3e-09 Score=82.03 Aligned_cols=48 Identities=52% Similarity=0.770 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 246 ~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999998763
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.92 E-value=1.6e-09 Score=101.40 Aligned_cols=62 Identities=37% Similarity=0.483 Sum_probs=57.0
Q ss_pred cCCCccCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 230 LLGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 230 ~~~rkr~~~~~~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.|.|||.+. +|+ ..+||-+||++|||.+|+-+|.|||+.+.++|.++..|++||+.|+.+++
T Consensus 53 ~~~rKr~RL-~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 53 QPKRKRRRL-DHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred chHHHHHhh-ccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999988 667 78999999999999999999999999999999999999999999988765
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.91 E-value=4.9e-09 Score=76.76 Aligned_cols=47 Identities=51% Similarity=0.738 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 246 ~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
++++.+|. +||+||++||.||++|+.+||.+|..|+.+|..|..+++
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888 999999999999999999999999999999999988864
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.81 E-value=3.8e-09 Score=106.18 Aligned_cols=52 Identities=38% Similarity=0.618 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.|+.+.||.||+|||.+||+.||+|||+|++.||.+|....+||++|+++++
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~ 296 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE 296 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999874
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.59 E-value=6.6e-06 Score=66.36 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
+....|..||..|||.+|+.||.||..++.+||.++..|..+.+.|.++
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e 73 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQE 73 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999998877776666554
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=96.91 E-value=0.0025 Score=60.87 Aligned_cols=61 Identities=28% Similarity=0.313 Sum_probs=45.6
Q ss_pred CCCccCCChhhhhhHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 231 LGRKRGASEDMIEKTVERRQK-RMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 231 ~~rkr~~~~~~~e~~~errqr-RmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
|+++-..+.-.+|..+..|.. ...+||++|.+||+||-.+|..||.+|..|+.+|..|-.+
T Consensus 188 ~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~ 249 (279)
T KOG0837|consen 188 PELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASE 249 (279)
T ss_pred cccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 455554442234444444444 4689999999999999999999999999999999887544
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.39 E-value=0.0099 Score=57.63 Aligned_cols=51 Identities=35% Similarity=0.531 Sum_probs=41.3
Q ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 021098 246 VERRQKR-MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK-ELEK 296 (317)
Q Consensus 246 ~errqrR-mikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~-elE~ 296 (317)
.+++.+| .+.|..+|.|=|+||++-.+.|+-++..|+.+|++||.+. ++|+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 5566668999999999999999999999999999999986 3443
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.16 E-value=0.021 Score=54.56 Aligned_cols=53 Identities=34% Similarity=0.510 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 241 MIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 241 ~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+.|++..+-..|..||=++|++||.+.|.-..+...+|..|+.||+.|+.+++
T Consensus 187 ~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 187 PVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred chhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566667899999999999999889999999999999999999874
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.16 E-value=0.1 Score=45.49 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 244 ~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
....|..||-+|||==|+-+|.|+-.--.+||++...|..|.++|+.++
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~ 97 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEEN 97 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777789999999999999999999999997777777777776665
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=93.72 E-value=0.049 Score=57.47 Aligned_cols=45 Identities=33% Similarity=0.482 Sum_probs=40.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|-.||.=|||.+|+++|+||-.-|..||.+|..|..|-++|.++.
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er 534 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER 534 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677799999999999999999999999999999999988764
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.51 E-value=0.088 Score=52.81 Aligned_cols=64 Identities=31% Similarity=0.413 Sum_probs=51.4
Q ss_pred CccCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 021098 233 RKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKELEKM 297 (317)
Q Consensus 233 rkr~~~~~~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~elE~~ 297 (317)
.+..+.....+..++++.+=+++||.+|-++|.|||-.+..|+.+...+..+|..|. ..++|.+
T Consensus 270 ~~~~~s~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~-~~~~~~l 333 (395)
T KOG1414|consen 270 TGGVRSRTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL-LNEVELL 333 (395)
T ss_pred cccccccccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc-cchhhHH
Confidence 444434344556777886669999999999999999999999999999999999999 5555554
No 15
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.44 E-value=2.6 Score=32.20 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e 291 (317)
..|.+|+.++..|+.||.-|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888777765
No 16
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.44 E-value=0.099 Score=52.44 Aligned_cols=49 Identities=33% Similarity=0.354 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAAR---SRARKQAYTNELENKVSRLE-EENERLRKQ 291 (317)
Q Consensus 243 e~~~errqrRmikNReSA~r---SR~RKkay~~eLE~kv~~Le-~EN~~L~~e 291 (317)
.+.+.|+..|+.+|+.+|.. +|.||+.|+.+|+.+|+.|+ .+|..|..+
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~ 201 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQ 201 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcc
Confidence 35688999999999999999 99999999999999999999 777776553
No 17
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=78.96 E-value=2 Score=30.88 Aligned_cols=42 Identities=43% Similarity=0.435 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 250 qrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.++...|++=|+..-... .-+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455667777777666655 678999999999999999999875
No 18
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=74.01 E-value=5 Score=34.54 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|..-+++|++++..|+-||..|+++.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999873
No 19
>PHA03162 hypothetical protein; Provisional
Probab=72.33 E-value=2.6 Score=36.97 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 266 RKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+++.-+++|++++..|+-||..|+++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778999999999999999999874
No 20
>PHA03155 hypothetical protein; Provisional
Probab=70.17 E-value=5.4 Score=34.16 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.-+++|++++..|+-||..|+++.
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999874
No 21
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=65.03 E-value=33 Score=32.93 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=38.7
Q ss_pred CChhhhhhHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 237 ASEDMIEKTVERRQKR----MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 237 ~~~~~~e~~~errqrR----mikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+.+.-+.....|.+| +.|-|+.++.--..-+..+.+||.+...|+.++.+|+++..
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444444433333 45666666666666677788999999999999999988753
No 22
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=64.46 E-value=9.2 Score=32.76 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e 291 (317)
|+.|.+||++++.||+||.-|+.-
T Consensus 73 k~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 73 KEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466789999999999999888875
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.88 E-value=25 Score=29.22 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.++.+.+++.++..|+++|+.|+.+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666554
No 24
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.77 E-value=29 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.++.+.+|+.+++.|+++|..|+.+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888877764
No 25
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=55.99 E-value=28 Score=25.94 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 021098 272 NELENKVSRLEEENERLRKQKELEK 296 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~e~elE~ 296 (317)
.....++..|+.||..|+.+-+++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888866554
No 26
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.59 E-value=27 Score=33.37 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e 291 (317)
..|||.++..+..++..|+.+
T Consensus 95 n~ELE~elr~~~~~~~~L~~E 115 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRRE 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366666655555555555554
No 27
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=49.78 E-value=31 Score=28.14 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|+.+++.|+.++..++.+|..|..+.+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988753
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.28 E-value=98 Score=28.76 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021098 274 LENKVSRLEEENERLRK 290 (317)
Q Consensus 274 LE~kv~~Le~EN~~L~~ 290 (317)
++..++.|++||++|++
T Consensus 130 ~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 130 SDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 29
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=48.93 E-value=34 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 021098 270 YTNELENKVSRLEEENERLRKQKELEKM 297 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~elE~~ 297 (317)
-++.|-.+++.|++.|.+|..+|.+=+-
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889999999999999999986443
No 30
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=47.81 E-value=67 Score=33.10 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhHHH-------------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 021098 244 KTVERRQKRMIKNRES-------------------------AAR--SRARKQAYTNELENKVSRLEEENERLRKQK-ELE 295 (317)
Q Consensus 244 ~~~errqrRmikNReS-------------------------A~r--SR~RKkay~~eLE~kv~~Le~EN~~L~~e~-elE 295 (317)
..+|||.|-.|.+|.. +-. +=+++.+.+.|++.+-+.|+..|++|..++ +||
T Consensus 238 NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 238 NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 4678888878877642 111 112334456677778888888888888876 455
Q ss_pred hH
Q 021098 296 KM 297 (317)
Q Consensus 296 ~~ 297 (317)
.+
T Consensus 318 ~~ 319 (411)
T KOG1318|consen 318 SE 319 (411)
T ss_pred HH
Confidence 54
No 31
>KOG2829 consensus E2F-like protein [Transcription]
Probab=44.79 E-value=55 Score=32.52 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEE 283 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~ 283 (317)
+++.++.|++||.+ -.+|++|++||..++..++.
T Consensus 134 v~~le~Er~k~~er--------I~kK~a~lqEl~~q~~~fkn 167 (326)
T KOG2829|consen 134 VSELEEERKKRMER--------IKKKAAQLQELIEQVSAFKN 167 (326)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666543 36789999999998876653
No 32
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.22 E-value=1.2e+02 Score=23.51 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 249 RQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 249 rqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~ 289 (317)
..+++.+-|.+|.++=..+-.-+.+|-.++..|+.|++.++
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777766666666666666666666666554
No 33
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.14 E-value=81 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
....+..++.++..++.||.+|+.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888764
No 34
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=44.04 E-value=1.1e+02 Score=27.12 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 021098 264 RARKQAYTNELENKVSRL---EEENERLRK 290 (317)
Q Consensus 264 R~RKkay~~eLE~kv~~L---e~EN~~L~~ 290 (317)
-++|++|+++|..+...| -..|+.+..
T Consensus 17 I~~K~~~LqEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 367999999999866544 344444433
No 35
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=42.50 E-value=1.1e+02 Score=29.68 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021098 241 MIEKTVERRQKRMIKNRESA--ARSRARKQAY-TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 241 ~~e~~~errqrRmikNReSA--~rSR~RKkay-~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.-||...|+++-.+.-.-+- +..|.-+-+| +.+|+.+-..|..||+.|++++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666433222111 1223334444 6899999999999999998875
No 36
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.19 E-value=1.8e+02 Score=24.62 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.....+..++.|+..-+..=..-+.+++.++..|..+|.-|..+.|
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666655555555566666777777777777776643
No 37
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.18 E-value=41 Score=28.23 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+.+|...+..|.+||..|+.+|
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555
No 38
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.14 E-value=61 Score=26.59 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+.+|+.++..|..||+.|+.+.+
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666543
No 39
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.03 E-value=43 Score=25.54 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e 291 (317)
++||+.++..|+.|..+++.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776654
No 40
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.14 E-value=83 Score=32.28 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 245 TVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 245 ~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~el 294 (317)
..|+|++.+|+.-|.- |.++..|..+-..-+..||.|-++|.++.|+
T Consensus 111 AaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEF 157 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEF 157 (561)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 4567777777766543 4555566666666677777777777766543
No 41
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=38.00 E-value=28 Score=25.58 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~ 289 (317)
..+.|||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 456788888888888877764
No 42
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.86 E-value=74 Score=22.80 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 272 NELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+.|-.....|..||+.|+.+.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888777764
No 43
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.42 E-value=1.6e+02 Score=21.23 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 266 RKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
--...+.+|+.+...|..++..|..+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567889999999999999999865
No 44
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.92 E-value=48 Score=33.60 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 265 ARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
.+||+||..||.||.+|.-|...|-+
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999888877654
No 45
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=36.38 E-value=24 Score=22.69 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=11.8
Q ss_pred cccchhhccccHHHHHHHh
Q 021098 88 LSLTSALSKKTVDEVWRDI 106 (317)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI 106 (317)
.++-.+|||-|-++.|+-+
T Consensus 4 ~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 4 ESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp SS-----STCCHHHHHHTS
T ss_pred cCCCCCccHHHHHHHHHhc
Confidence 4455689999999999854
No 46
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=35.68 E-value=72 Score=27.45 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 246 VERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 246 ~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+-.|..|..++|+.+ .++.+++||.++..|+.+.+++.+
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344554444444433 235667888888888888777653
No 47
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=35.62 E-value=18 Score=28.76 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=10.6
Q ss_pred ccchHHHHHHHh
Q 021098 125 GEMTLEDFLVKA 136 (317)
Q Consensus 125 GEMTLEdFLvrA 136 (317)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 789999999984
No 48
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.46 E-value=58 Score=27.67 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021098 277 KVSRLEEENERLRKQKEL 294 (317)
Q Consensus 277 kv~~Le~EN~~L~~e~el 294 (317)
+..+|++||+-|+-+.|+
T Consensus 80 k~~~LeEENNlLklKiev 97 (108)
T cd07429 80 KNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788999999888764
No 49
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.88 E-value=53 Score=24.20 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 021098 277 KVSRLEEENERL 288 (317)
Q Consensus 277 kv~~Le~EN~~L 288 (317)
+++.+++|+++|
T Consensus 56 ~l~~le~e~~~l 67 (68)
T PF06305_consen 56 ELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 50
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.71 E-value=63 Score=29.64 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHh------cCCCCCCCCCcccc
Q 021098 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK-----ELEKMF------SAPPPQPKYQLRRT 312 (317)
Q Consensus 244 ~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~-----elE~~~------~~~~~~pk~~LRRT 312 (317)
.......+++.+--+-..-...++-..+.+||.++-.|+.+.+.+.+++ ++.++. ...-..-+....-|
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCC
Q 021098 313 SSSPF 317 (317)
Q Consensus 313 ~S~p~ 317 (317)
.++||
T Consensus 186 ~aaPW 190 (190)
T PF05266_consen 186 AAAPW 190 (190)
T ss_pred hcCCC
No 51
>PF14645 Chibby: Chibby family
Probab=33.90 E-value=61 Score=27.55 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 274 LENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 274 LE~kv~~Le~EN~~L~~e~el 294 (317)
|..+...|++||+-|+-+.++
T Consensus 76 l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444567788888888887764
No 52
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.42 E-value=88 Score=26.60 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHh
Q 021098 268 QAYTNELENKVSRLEEENERLRKQKE-----LEKMF 298 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~e-----lE~~~ 298 (317)
|..+++|-.+|...++||-+|+.+|+ +|.++
T Consensus 69 QnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 69 QNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 45678888999999999999999986 47776
No 53
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.33 E-value=66 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e 291 (317)
.++.+|..+-..|+-||+.|++.
T Consensus 29 ~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 29 KQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.11 E-value=63 Score=27.41 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~el 294 (317)
+-+.+|...|..|.+||..|+.+|+-
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999863
No 55
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.96 E-value=91 Score=24.44 Aligned_cols=13 Identities=46% Similarity=0.716 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 021098 278 VSRLEEENERLRK 290 (317)
Q Consensus 278 v~~Le~EN~~L~~ 290 (317)
...|+.||++|+.
T Consensus 41 ~~~L~~en~~L~~ 53 (72)
T PF06005_consen 41 NEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=32.04 E-value=1.6e+02 Score=30.67 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e 291 (317)
++.+.++|.++..|++||..|..+
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999988764
No 57
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.88 E-value=74 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021098 274 LENKVSRLEEENERLRKQK 292 (317)
Q Consensus 274 LE~kv~~Le~EN~~L~~e~ 292 (317)
|+..+..++.||+.|+...
T Consensus 12 ~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 12 IESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666554
No 58
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.16 E-value=1.7e+02 Score=23.48 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.-+..|..++..|.++|..|+++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999999998874
No 59
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=30.87 E-value=1.7e+02 Score=33.04 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 021098 253 MIKNRESAARSRARKQAYTNELENKVS-RLEEENER 287 (317)
Q Consensus 253 mikNReSA~rSR~RKkay~~eLE~kv~-~Le~EN~~ 287 (317)
|+-.|..+-.-|.+.++|-..|+.++. +|.+|-++
T Consensus 960 ~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ee 995 (1259)
T KOG0163|consen 960 METKRKAEEEQRKAQEEEERRLALELQEQLAKEAEE 995 (1259)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555 55444443
No 60
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=30.37 E-value=26 Score=27.47 Aligned_cols=16 Identities=31% Similarity=0.206 Sum_probs=13.5
Q ss_pred ccccchHHHHHHHhcc
Q 021098 123 TLGEMTLEDFLVKAGV 138 (317)
Q Consensus 123 TlGEMTLEdFLvrAGV 138 (317)
-|=.||.|||+.||+.
T Consensus 39 ~LC~ls~edF~~~~p~ 54 (71)
T cd08533 39 DLCALGKERFLELAPD 54 (71)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4568999999999974
No 61
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.08 E-value=79 Score=26.30 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021098 271 TNELENKVSRLEEENERLRKQKELE 295 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~elE 295 (317)
+.+|+.++.+|+.||.-|++..++.
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777777766553
No 62
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=29.89 E-value=28 Score=26.76 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=14.8
Q ss_pred cccccchHHHHHHHhcc
Q 021098 122 ATLGEMTLEDFLVKAGV 138 (317)
Q Consensus 122 ~TlGEMTLEdFLvrAGV 138 (317)
..|=.||.|||+.||+.
T Consensus 38 k~LC~ms~edF~~~~p~ 54 (68)
T cd08757 38 QTLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHHcCCHHHHHHHcCC
Confidence 46779999999999976
No 63
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.54 E-value=79 Score=24.51 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e 291 (317)
-+.||+.++..|..|.++|+.+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe 47 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAE 47 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998776
No 64
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=29.31 E-value=29 Score=27.36 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=14.0
Q ss_pred ccccchHHHHHHHhccc
Q 021098 123 TLGEMTLEDFLVKAGVV 139 (317)
Q Consensus 123 TlGEMTLEdFLvrAGVV 139 (317)
.|=.||.|||+.+|+-.
T Consensus 41 ~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 41 ELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHcCCHHHHHHHcCCC
Confidence 56699999999998654
No 65
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.26 E-value=2.5e+02 Score=24.21 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 252 RMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 252 RmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|..+.|-.+--.|+=-|+.|..||-+.+.++.-|..|.+...
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIk 56 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIK 56 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888888889999999888888888888887753
No 66
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.17 E-value=3.8e+02 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021098 245 TVERRQKRMIKNRESAARSRARKQAYTNELEN 276 (317)
Q Consensus 245 ~~errqrRmikNReSA~rSR~RKkay~~eLE~ 276 (317)
..+...++..++|+-++..++|.++-...|..
T Consensus 92 ~~~~~~~~~~~~req~~~~~~K~~e~~~ql~k 123 (233)
T KOG4739|consen 92 QVKLELKQLEKDREQTAYFEKKTQEETQQLSK 123 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888888888776655555544
No 67
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.17 E-value=3.5e+02 Score=24.24 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
+....++|+.++..+-+.|.+.+..=.+...+.|.++...+.|-.+++.+
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666665555555555555555555554433
No 68
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.97 E-value=3.8e+02 Score=24.98 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 253 mikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+.+-.++...-..+-+.|+..++.++..|+++...+..
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555443
No 69
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=28.58 E-value=4.1e+02 Score=24.40 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 262 RSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 262 rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
..=++|++|+.+-+.+...++.+..+|+.+.
T Consensus 139 ~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 139 EGLKIRQELIEEAKKKREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566788888777777777777777664
No 70
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=28.24 E-value=1.1e+02 Score=25.48 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~el 294 (317)
+..++.++..|+.++.+|+.++++
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~di 96 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENEL 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888888775
No 71
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.21 E-value=2.8e+02 Score=26.90 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 252 RMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 252 RmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+++.|..-.+.-.. -+..+++||.++..|++|.+.|..+..
T Consensus 184 ~~~~N~~m~kei~~-~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 184 RTLENQVMQKEIVQ-FREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455444443333 337889999999999999999988754
No 72
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=28.21 E-value=1.3e+02 Score=18.63 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021098 272 NELENKVSRLEEENERL 288 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L 288 (317)
.+||++...|++|.+.+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 57888888888888765
No 73
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.07 E-value=2.3e+02 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+..+++|.+++.|+.||+.|+.+.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999999999863
No 74
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=28.06 E-value=31 Score=26.22 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=14.7
Q ss_pred cccccchHHHHHHHhcc
Q 021098 122 ATLGEMTLEDFLVKAGV 138 (317)
Q Consensus 122 ~TlGEMTLEdFLvrAGV 138 (317)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 45778999999999976
No 75
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.83 E-value=1e+02 Score=25.29 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.|+..|...+..|..+|..|+.++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~ 48 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEI 48 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666554
No 76
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.74 E-value=3.4e+02 Score=22.18 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=28.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 250 qrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
..|-++.-+.+.+.+..|.+-+..|..++..|..+...+....
T Consensus 62 ~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 62 RERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666667777777777777777777664
No 77
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=27.35 E-value=3.9e+02 Score=22.70 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
+-+.-++|..++.++-+.|...+..=.+...+.+.++...+.+-..+..+
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~ 78 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888888888888888888888877777776554
No 78
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.12 E-value=1.2e+02 Score=24.89 Aligned_cols=28 Identities=39% Similarity=0.650 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 266 RKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
=||-|=...|.+|..|+.+|..|.++++
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e 66 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENE 66 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778989999999999999999999986
No 79
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=27.10 E-value=1.1e+02 Score=33.76 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 255 KNRESAARSRARKQAYTNELENKVSRL 281 (317)
Q Consensus 255 kNReSA~rSR~RKkay~~eLE~kv~~L 281 (317)
+.=+-|+.|...||+|++||+-+++-|
T Consensus 417 ~ksq~~kl~k~q~k~y~de~dyr~kl~ 443 (763)
T TIGR00993 417 TKAQMAKLSKEQRKAYLEEYDYRVKLL 443 (763)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999866533
No 80
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.88 E-value=1.9e+02 Score=26.24 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 265 ARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+.+..+.+|..++..|+.||+.|.++.+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677888888888888888877653
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.70 E-value=99 Score=25.95 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
=|.++.+|..+-..|+-||+.|++..
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999874
No 82
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.99 E-value=1.3e+02 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021098 269 AYTNELENKVSRLEEENERLRKQKELE 295 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~elE 295 (317)
+-++-|..++..|++.|..|+++|.|-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888899999999999999999873
No 83
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=25.46 E-value=37 Score=26.82 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.0
Q ss_pred ccccchHHHHHHHhccc
Q 021098 123 TLGEMTLEDFLVKAGVV 139 (317)
Q Consensus 123 TlGEMTLEdFLvrAGVV 139 (317)
-|=.||.|||+.+|+..
T Consensus 41 ~LC~LskedF~~~ap~~ 57 (75)
T cd08540 41 ELCKMTKDDFQRLTPSY 57 (75)
T ss_pred HHHhCCHHHHHHHcCCC
Confidence 35689999999999754
No 84
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=24.90 E-value=42 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=19.7
Q ss_pred ccccHHHHHHHhhhccCCCCCCccccccccccchHHHHHHHh
Q 021098 95 SKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKA 136 (317)
Q Consensus 95 s~KTVDEVWrdI~~~~~~~~~~~~~rQ~TlGEMTLEdFLvrA 136 (317)
+..-|+++|+++-..+ =|.+|.+||+.--
T Consensus 49 ~~~~v~~i~~~~D~d~-------------dG~I~f~eF~~~~ 77 (88)
T cd05030 49 NQKAIDKIFEDLDTNQ-------------DGQLSFEEFLVLV 77 (88)
T ss_pred CHHHHHHHHHHcCCCC-------------CCcCcHHHHHHHH
Confidence 3667888888773321 2789999998543
No 85
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.75 E-value=2e+02 Score=27.85 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
-++.+..++..|++||++|+...
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666779999999999998863
No 86
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=24.72 E-value=65 Score=32.37 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=46.0
Q ss_pred ccccccccccch----hhccccHHHHHHHhhhc-----cC-----------------CCCCCcccccccc-ccchHHHHH
Q 021098 81 SLQRQASLSLTS----ALSKKTVDEVWRDIQQS-----KS-----------------SGEKKPRDRQATL-GEMTLEDFL 133 (317)
Q Consensus 81 ~LqrQgSltLp~----~ls~KTVDEVWrdI~~~-----~~-----------------~~~~~~~~rQ~Tl-GEMTLEdFL 133 (317)
.....|.+++|- ....||++|+=++|.+. .+ .+.+..+.+.+-- .-|||-|.|
T Consensus 119 ~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L~~~~~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaI 198 (379)
T PRK15078 119 WVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRLAKYIESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDAI 198 (379)
T ss_pred EECCCCeEeeccCceEEECCCCHHHHHHHHHHHHHHhccCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHHH
Confidence 356889999996 36999999999999863 00 1234445565533 358999999
Q ss_pred HHhccccccC
Q 021098 134 VKAGVVAEAS 143 (317)
Q Consensus 134 vrAGVV~e~~ 143 (317)
.+||-+++..
T Consensus 199 a~AGG~~~~a 208 (379)
T PRK15078 199 NAAGGLTDDA 208 (379)
T ss_pred HHccCCCccc
Confidence 9999888763
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.35 E-value=97 Score=32.55 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRK 290 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~ 290 (317)
++.|+.+-+.|.+||++|++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888866
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.13 E-value=4.5e+02 Score=24.08 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
...++.+++-++-+.+=..-++.+..++.++..|+-|++.|..+.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766767777888888888888888877653
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.09 E-value=3.4e+02 Score=23.94 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 240 DMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 240 ~~~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+++ ...++...-...|++.+-.--.-+|+.+..|+.++..+..+...|..
T Consensus 24 ~~v-~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 24 DHV-ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 33567777778888888888888888888888877776655555543
No 90
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.97 E-value=2.4e+02 Score=22.26 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.++.|+.+...|+.||.+|+-|.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~ 65 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEI 65 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888899999999999988764
No 91
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.94 E-value=5.7e+02 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~ 289 (317)
+-...++|+.++.+.-+.|.+.+..=...+.+.|.++...+.|-+.+.
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii 125 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIA 125 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777776666666666666666655555543
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.87 E-value=1.3e+02 Score=23.50 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
-+.+|..+...|.++|..|+.+++
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555555555556666666653
No 93
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.59 E-value=4.8e+02 Score=22.54 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+-+.-++|+.++...-+.|.+.+..-.++..+.|.++...+.|-.++..
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777777766666677777776666666555543
No 94
>COG5562 Phage envelope protein [General function prediction only]
Probab=23.42 E-value=40 Score=29.82 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=14.4
Q ss_pred ccchHHHH---HHHhccccc
Q 021098 125 GEMTLEDF---LVKAGVVAE 141 (317)
Q Consensus 125 GEMTLEdF---LvrAGVV~e 141 (317)
||.|.|+| |.+|||.+=
T Consensus 87 GqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 87 GQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred CCccHHHHHHHHHhCCeEEE
Confidence 78899999 689999874
No 95
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.33 E-value=3.1e+02 Score=26.05 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 249 RQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 249 rqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+.+...+--+.|+....-=+-+.+++-.+...|.+|+++|+.+.+
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344444555555555554445567777777788888888877755
No 96
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.25 E-value=3.8e+02 Score=23.18 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 253 mikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
+.+.-.......++-.+|+.+||..+..++.++.++.+.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445556666789999999999999999888776
No 97
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.21 E-value=5.5e+02 Score=24.27 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 244 ~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+..++|+.++.++-+.|...+..=++...+.|.++..++.+-..+..
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 78 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMA 78 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777776666666677777766666665543
No 98
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.07 E-value=2.2e+02 Score=26.74 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 021098 275 ENKVSRL 281 (317)
Q Consensus 275 E~kv~~L 281 (317)
++++..|
T Consensus 82 ~~e~~~l 88 (276)
T PRK13922 82 KKELLEL 88 (276)
T ss_pred HHHHHHH
Confidence 3333333
No 99
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.05 E-value=1.8e+02 Score=21.68 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=29.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 250 qrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
.+++...||.-...+.--.+.+.+||.+...|+++.+.++.
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666655544555557789999999999999887753
No 100
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.99 E-value=5e+02 Score=23.19 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 244 KTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERL 288 (317)
Q Consensus 244 ~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L 288 (317)
...++|+.++.+.-+.|...+..=.....+.|.++...+.|-..+
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i 102 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRI 102 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554455555555544444444443
No 101
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=22.88 E-value=2e+02 Score=30.31 Aligned_cols=50 Identities=32% Similarity=0.369 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAY-------T---NELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay-------~---~eLE~kv~~Le~EN~~L~~e 291 (317)
+=|.+.|+.|-|+.-.||-++....=... + ++|.++|..||.+|..|..+
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~q 308 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQ 308 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHH
Confidence 33788888888988888888877654332 2 67889999999999998776
No 102
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=22.54 E-value=92 Score=29.83 Aligned_cols=23 Identities=48% Similarity=0.729 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+.+||.+|..|..|.++|+++.|
T Consensus 20 vreleakveelnkereelkkere 42 (347)
T PF06673_consen 20 VRELEAKVEELNKEREELKKERE 42 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 56899999999999999998865
No 103
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=22.45 E-value=44 Score=26.46 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=30.9
Q ss_pred cccchhhccccHHHHHHHhhhc---cCCCC--CCccccccccccchHHHHHHHhcc
Q 021098 88 LSLTSALSKKTVDEVWRDIQQS---KSSGE--KKPRDRQATLGEMTLEDFLVKAGV 138 (317)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~~---~~~~~--~~~~~rQ~TlGEMTLEdFLvrAGV 138 (317)
|.+|..--.=|.+.|+.=|.-- -+-.+ ..-.---..|=.||.|||+.|++.
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L~~~~~~F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRLPPPPRCFELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCCCCchhcCCCCHHHHHcCCHHHHHHHcCC
Confidence 4566666667888888766532 11111 011112346779999999999865
No 104
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=22.31 E-value=3.4e+02 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 256 NRESAARSRARKQAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 256 NReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~ 290 (317)
+.|+...+|+|.| ++|+++.+..+++-.++.+
T Consensus 81 rqEa~eaAR~RmQ---EE~dakA~~~kEKq~q~EE 112 (190)
T PF06936_consen 81 RQEAMEAARRRMQ---EELDAKAEEYKEKQKQEEE 112 (190)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3344445555544 4555555555544444443
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.30 E-value=2.9e+02 Score=30.40 Aligned_cols=51 Identities=33% Similarity=0.509 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 021098 242 IEKTVERRQKRMIKNRESAAR---------------SRARKQAYTNELENKVSRLEEENERLRKQK-ELEK 296 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~r---------------SR~RKkay~~eLE~kv~~Le~EN~~L~~e~-elE~ 296 (317)
+|+.....+++..+.-+.|+| +|.|+ .+||.++..|+.|......+. ++|.
T Consensus 507 lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~----~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 507 LEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRR----RQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 106
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.24 E-value=40 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=12.2
Q ss_pred hccccHHHHHHHhhh
Q 021098 94 LSKKTVDEVWRDIQQ 108 (317)
Q Consensus 94 ls~KTVDEVWrdI~~ 108 (317)
||.+-|+|||+++.=
T Consensus 1 ls~~~v~evW~~~tl 15 (235)
T cd04405 1 LSPEVVEEIWKEQTL 15 (235)
T ss_pred CCHHHHHHHHHHHHH
Confidence 567889999999853
No 107
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.60 E-value=1.6e+02 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 273 ELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 273 eLE~kv~~Le~EN~~L~~e~e 293 (317)
.|-.++..+..|+..|..+++
T Consensus 25 ~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 25 LLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 108
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.47 E-value=3.3e+02 Score=25.35 Aligned_cols=19 Identities=53% Similarity=0.655 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021098 278 VSRLEEENERLRKQKELEK 296 (317)
Q Consensus 278 v~~Le~EN~~L~~e~elE~ 296 (317)
..-|+.|-++|+++.|.|+
T Consensus 136 t~lLEkEReRLkq~lE~Ek 154 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEK 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666554443
No 109
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.35 E-value=3.9e+02 Score=22.76 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 247 errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+..+|-.|||||-+. |+.++-.....-.-|..+|.-+..+.
T Consensus 54 K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qq 95 (121)
T PF10669_consen 54 KKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQ 95 (121)
T ss_pred HHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHH
Confidence 3444566778887543 34455555555555777777776664
No 110
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=21.33 E-value=7.7e+02 Score=24.55 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHH---HhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMI---KNRESAARSRARKQAY---TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 243 e~~~errqrRmi---kNReSA~rSR~RKkay---~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
++...||+.+++ +-|+ +-|+.+.+- ++.||.+-..|+..-.+|.+|.
T Consensus 226 ~~~~rkr~qnk~AAtRYRq---KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQ---KKRAEKEALLGELEGLEKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777766 3343 333444444 4556678888888888887775
No 111
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.63 E-value=1.5e+02 Score=24.62 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEE 283 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~ 283 (317)
.++....|+.++..|+.
T Consensus 46 l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 46 LKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 33444455555555443
No 112
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.61 E-value=1.7e+02 Score=22.10 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+.+||+++..++.....+++++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en 23 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKEN 23 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 113
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=20.55 E-value=3.9e+02 Score=23.22 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 265 ARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 265 ~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
..--.+|-.|.++.+.|++||..|+.+.
T Consensus 92 ~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 92 LQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3445678899999999999999998763
No 114
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=20.22 E-value=33 Score=28.23 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.2
Q ss_pred cccccccccccccchhhccc
Q 021098 78 EQTSLQRQASLSLTSALSKK 97 (317)
Q Consensus 78 ~~~~LqrQgSltLp~~ls~K 97 (317)
+..-|.|||||-....|+++
T Consensus 11 ~~~~L~RQgS~R~f~~l~~~ 30 (88)
T PF06311_consen 11 PPSMLERQGSFRGFPKLSQQ 30 (88)
T ss_pred CHHHHHhhhccccccccccc
Confidence 44458999999988888877
Done!