Query 021098
Match_columns 317
No_of_seqs 217 out of 759
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 5.5E-14 1.9E-18 103.1 7.0 46 248-293 1-46 (55)
2 2wt7_A Proto-oncogene protein 99.1 8E-11 2.7E-15 88.1 7.2 46 247-292 1-46 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.1 3E-10 1E-14 84.2 7.0 46 248-293 1-46 (61)
4 2dgc_A Protein (GCN4); basic d 99.0 3.4E-10 1.2E-14 85.0 6.7 46 248-293 9-54 (63)
5 1jnm_A Proto-oncogene C-JUN; B 98.9 1.6E-09 5.6E-14 80.5 7.2 46 248-293 1-46 (62)
6 1ci6_A Transcription factor AT 98.5 1.2E-07 4.2E-12 70.9 5.5 45 248-292 2-46 (63)
7 1gd2_E Transcription factor PA 98.2 4.8E-06 1.7E-10 63.8 7.4 44 250-293 10-53 (70)
8 1gu4_A CAAT/enhancer binding p 98.1 4.8E-06 1.6E-10 65.0 7.1 51 243-293 10-60 (78)
9 1hjb_A Ccaat/enhancer binding 98.1 8.8E-06 3E-10 64.7 7.0 51 243-293 10-60 (87)
10 3a5t_A Transcription factor MA 98.0 7.8E-07 2.7E-11 73.3 0.5 51 242-292 31-81 (107)
11 2wt7_B Transcription factor MA 97.5 0.00034 1.2E-08 56.0 8.5 50 243-292 22-71 (90)
12 1skn_P DNA-binding domain of S 94.7 0.017 5.8E-07 46.2 2.9 34 243-276 57-90 (92)
13 2oqq_A Transcription factor HY 94.2 0.042 1.4E-06 38.1 3.5 25 268-292 2-26 (42)
14 3s9g_A Protein hexim1; cyclin 92.6 0.54 1.9E-05 38.1 8.2 27 268-294 64-90 (104)
15 2c9l_Y EB1, zebra, BZLF1 trans 89.8 1.2 4E-05 32.7 6.8 39 253-291 6-44 (63)
16 3he5_A Synzip1; heterodimeric 83.8 1.2 4.1E-05 30.9 3.8 23 270-292 4-26 (49)
17 2oxj_A Hybrid alpha/beta pepti 83.2 1.2 4E-05 29.5 3.4 24 270-293 2-25 (34)
18 1dip_A Delta-sleep-inducing pe 83.0 1.2 4.2E-05 34.4 4.0 25 268-292 21-45 (78)
19 3m48_A General control protein 81.8 1.2 4.2E-05 29.3 3.0 23 271-293 2-24 (33)
20 1kd8_A GABH AIV, GCN4 acid bas 79.8 1.7 5.7E-05 29.1 3.2 28 271-298 3-31 (36)
21 2kz5_A Transcription factor NF 79.2 0.22 7.7E-06 39.7 -1.4 27 243-269 61-87 (91)
22 1kd8_B GABH BLL, GCN4 acid bas 78.5 2.1 7.1E-05 28.7 3.4 24 270-293 2-25 (36)
23 2oqq_A Transcription factor HY 77.9 3 0.0001 28.8 4.1 23 269-291 17-39 (42)
24 1hlo_A Protein (transcription 77.9 1.4 4.9E-05 33.4 2.8 26 267-292 55-80 (80)
25 1am9_A Srebp-1A, protein (ster 75.2 3.3 0.00011 31.6 4.3 27 267-293 48-74 (82)
26 3c3f_A Alpha/beta peptide with 74.6 3.2 0.00011 27.4 3.4 24 270-293 2-25 (34)
27 1fmh_A General control protein 74.2 5.2 0.00018 25.7 4.2 25 271-295 3-28 (33)
28 1hjb_A Ccaat/enhancer binding 73.3 25 0.00085 27.5 8.9 55 244-298 15-73 (87)
29 3c3g_A Alpha/beta peptide with 72.8 5 0.00017 26.3 4.0 22 271-292 2-23 (33)
30 1nkp_B MAX protein, MYC proto- 69.2 5.6 0.00019 30.1 4.3 27 267-293 45-71 (83)
31 2oa5_A Hypothetical protein BQ 68.4 3.5 0.00012 33.9 3.1 24 269-292 8-31 (110)
32 2wq1_A General control protein 66.8 8.1 0.00028 25.4 4.0 22 271-292 2-23 (33)
33 2bni_A General control protein 66.5 5.6 0.00019 26.3 3.2 23 270-292 2-24 (34)
34 2hy6_A General control protein 66.0 5.8 0.0002 26.2 3.2 23 270-292 2-24 (34)
35 1uo4_A General control protein 65.9 5.8 0.0002 26.2 3.2 23 270-292 2-24 (34)
36 1zme_C Proline utilization tra 65.5 7.4 0.00025 27.7 4.1 23 269-291 44-66 (70)
37 1nlw_A MAD protein, MAX dimeri 64.0 11 0.00039 28.7 5.1 27 267-293 45-71 (80)
38 2er8_A Regulatory protein Leu3 62.7 4 0.00014 29.4 2.2 23 268-290 48-70 (72)
39 2dfs_A Myosin-5A; myosin-V, in 60.7 27 0.00092 38.2 9.2 28 268-295 1015-1043(1080)
40 1p9i_A Cortexillin I/GCN4 hybr 58.5 8.5 0.00029 24.4 2.9 22 272-293 2-23 (31)
41 3he4_B Synzip5; heterodimeric 52.5 26 0.0009 23.9 4.7 22 268-289 9-30 (46)
42 2r2v_A GCN4 leucine zipper; co 50.8 29 0.001 22.9 4.6 22 271-292 3-24 (34)
43 2k8f_B Cellular tumor antigen 50.3 6.1 0.00021 26.5 1.3 24 84-107 4-27 (39)
44 3nmd_A CGMP dependent protein 47.4 27 0.00092 26.6 4.6 26 266-291 37-62 (72)
45 2wuj_A Septum site-determining 47.2 25 0.00087 25.0 4.3 25 269-293 27-51 (57)
46 1gu4_A CAAT/enhancer binding p 44.9 71 0.0024 24.3 6.8 55 244-298 15-73 (78)
47 1nkp_A C-MYC, MYC proto-oncoge 44.3 34 0.0012 26.3 5.0 27 267-293 50-76 (88)
48 2p22_D Hypothetical 12.0 kDa p 42.1 7.4 0.00025 30.2 0.8 10 55-64 1-10 (79)
49 3w03_C DNA repair protein XRCC 41.4 24 0.00081 31.2 4.1 23 270-292 153-175 (184)
50 2aze_A Transcription factor DP 40.0 76 0.0026 27.4 6.9 25 265-289 22-49 (155)
51 1deb_A APC protein, adenomatou 37.7 37 0.0013 24.3 3.8 21 272-292 6-26 (54)
52 1go4_E MAD1 (mitotic arrest de 36.1 44 0.0015 26.9 4.5 24 270-293 13-36 (100)
53 1hwt_C Protein (heme activator 35.6 14 0.00049 26.9 1.5 23 267-289 56-78 (81)
54 3q4f_C DNA repair protein XRCC 35.3 29 0.001 30.8 3.6 23 269-291 161-183 (186)
55 2yy0_A C-MYC-binding protein; 35.2 48 0.0016 23.5 4.1 21 271-291 28-48 (53)
56 1zxa_A CGMP-dependent protein 32.6 64 0.0022 24.1 4.6 25 267-291 23-47 (67)
57 2jws_A GA88; evolution, foldin 32.4 14 0.00049 26.9 1.0 10 95-104 35-44 (56)
58 2lz1_A Nuclear factor erythroi 32.2 0.88 3E-05 36.2 -5.9 25 244-268 62-86 (90)
59 1dip_A Delta-sleep-inducing pe 31.8 1.1E+02 0.0037 23.6 5.8 27 271-297 17-43 (78)
60 2dgc_A Protein (GCN4); basic d 31.6 1.4E+02 0.0047 21.6 6.2 24 269-292 37-60 (63)
61 3coq_A Regulatory protein GAL4 31.2 44 0.0015 24.5 3.6 29 269-297 45-73 (89)
62 1ci6_A Transcription factor AT 30.0 1.5E+02 0.0053 21.2 6.9 22 271-292 32-53 (63)
63 1pyi_A Protein (pyrimidine pat 29.9 38 0.0013 25.3 3.1 20 269-288 48-67 (96)
64 3ni0_A Bone marrow stromal ant 29.5 76 0.0026 25.5 4.8 26 269-294 67-92 (99)
65 1iq3_A Ralbp1-interacting prot 29.4 28 0.00096 27.1 2.3 33 94-139 53-85 (110)
66 3oja_A Leucine-rich immune mol 28.9 1.5E+02 0.0051 28.3 7.8 30 263-292 429-458 (487)
67 3fs7_A Parvalbumin, thymic; ca 28.2 61 0.0021 23.6 4.0 29 93-134 77-105 (109)
68 2w6b_A RHO guanine nucleotide 28.0 74 0.0025 23.1 4.0 18 273-290 14-31 (56)
69 1qjt_A EH1, epidermal growth f 26.8 22 0.00075 27.0 1.2 33 94-139 42-74 (99)
70 4ath_A MITF, microphthalmia-as 26.7 1.2E+02 0.004 23.6 5.3 28 269-296 49-77 (83)
71 1uii_A Geminin; human, DNA rep 26.0 71 0.0024 24.9 4.0 23 270-292 54-76 (83)
72 3mq7_A Bone marrow stromal ant 25.1 1.7E+02 0.0059 24.2 6.3 22 268-289 70-91 (121)
73 3plt_A Sphingolipid long chain 25.0 1.8E+02 0.0061 26.6 7.1 21 250-270 95-116 (234)
74 3s9g_A Protein hexim1; cyclin 25.0 56 0.0019 26.4 3.3 18 273-290 41-58 (104)
75 1nkp_B MAX protein, MYC proto- 24.9 94 0.0032 23.1 4.5 23 270-292 55-77 (83)
76 1sv0_A ETS DNA-binding protein 24.3 24 0.00081 27.3 1.0 50 88-138 4-60 (85)
77 1eh2_A EPS15; calcium binding, 23.9 33 0.0011 26.6 1.8 33 94-139 45-77 (106)
78 2dkx_A SAM pointed domain-cont 23.2 26 0.0009 27.6 1.1 50 88-138 18-74 (96)
79 1r4g_A RNA polymerase alpha su 22.0 53 0.0018 23.4 2.3 17 260-276 14-30 (53)
80 3mq9_A Bone marrow stromal ant 21.3 1.2E+02 0.0041 28.8 5.5 32 260-293 436-467 (471)
81 3o0z_A RHO-associated protein 20.5 3.3E+02 0.011 23.6 7.6 43 249-291 70-112 (168)
82 1t2k_D Cyclic-AMP-dependent tr 20.4 2.3E+02 0.0079 19.9 7.1 22 271-292 31-52 (61)
83 1gk7_A Vimentin; intermediate 20.3 1.7E+02 0.0058 19.4 4.5 17 276-292 20-36 (39)
84 1a92_A Delta antigen; leucine 20.2 1.1E+02 0.0039 21.6 3.7 20 272-291 17-36 (50)
85 3eff_K Voltage-gated potassium 20.0 1.6E+02 0.0054 23.5 5.2 25 268-292 110-134 (139)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=5.5e-14 Score=103.11 Aligned_cols=46 Identities=41% Similarity=0.679 Sum_probs=43.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|+++||++||+||++||.||++|+++||.+|..|+.||..|+.+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999864
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.15 E-value=8e-11 Score=88.08 Aligned_cols=46 Identities=30% Similarity=0.527 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 247 ERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 247 errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|||++|+++||+||++||.||++|+.+||.+|..|+.+|..|..+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999875
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.06 E-value=3e-10 Score=84.25 Aligned_cols=46 Identities=30% Similarity=0.518 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..+.+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999863
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.04 E-value=3.4e-10 Score=84.99 Aligned_cols=46 Identities=35% Similarity=0.406 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+..++..+||+||++||.||++|+.+||.+|..|+.+|..|..+.+
T Consensus 9 ~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445699999999999999999999999999999999998864
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.95 E-value=1.6e-09 Score=80.53 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=42.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|+.+|..+||+||++||.||++|+.+||.+|..|+.+|..|..+..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999863
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.51 E-value=1.2e-07 Score=70.91 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=37.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 248 rrqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|+++++.+||.+|+|+|.||++++.+||.++..|+.+|..|+.+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999999999875
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.17 E-value=4.8e-06 Score=63.76 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 250 QKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 250 qrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+|...||.|++..|.||++|+.+||.+|..|+.+|..|..+++
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~ 53 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLEND 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999988888877764
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.15 E-value=4.8e-06 Score=64.99 Aligned_cols=51 Identities=31% Similarity=0.395 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|+..+.-..|..||.++|++||.++++...+++.++..|+.||..|+.+.+
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445567999999999999999999999999999999999999864
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.06 E-value=8.8e-06 Score=64.71 Aligned_cols=51 Identities=31% Similarity=0.395 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
|+..++-..|..||.++|++||.++++...+++.++..|+.||..|+.+.+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555677999999999999999999999999999999999999863
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.03 E-value=7.8e-07 Score=73.28 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 242 IEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 242 ~e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.|....|.+||..|||.+|+.||.||.+.+.+||.++..|..+.+.|..++
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En 81 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999988877777777776654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.54 E-value=0.00034 Score=55.95 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+....|..||-.|||..|+.||.||..-..+||.++..|..+.+.|++++
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999998888888875
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=94.72 E-value=0.017 Score=46.17 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQAYTNELEN 276 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKkay~~eLE~ 276 (317)
+....|..||..|||.+|+++|+||.+-+.+|+.
T Consensus 57 Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 57 QRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3467888999999999999999999998887763
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.20 E-value=0.042 Score=38.06 Aligned_cols=25 Identities=44% Similarity=0.667 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|||+.+||.+++.|+..|.+|..+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999988888888888887664
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.61 E-value=0.54 Score=38.15 Aligned_cols=27 Identities=41% Similarity=0.503 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~el 294 (317)
-+.+.+||.+|..|..||+.|++++++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366899999999999999999999885
No 15
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=89.81 E-value=1.2 Score=32.72 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 253 MIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 253 mikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
.-|||.+++++|+|=+..++-...-.+.-.+||++|+--
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l 44 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 358999999999998776666655555667889988753
No 16
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.81 E-value=1.2 Score=30.93 Aligned_cols=23 Identities=48% Similarity=0.722 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+..||.+|..|+.||+.|++++
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 46789999999999999999875
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=83.18 E-value=1.2 Score=29.51 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+..||.+|..|-.+|..|..+++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 468899999999999999998864
No 18
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.00 E-value=1.2 Score=34.35 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
|+.|.+|+.++++||.||.-|+.-.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3668899999999999999988764
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.75 E-value=1.2 Score=29.30 Aligned_cols=23 Identities=30% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+..||.||..|-.+|..|..+++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHH
Confidence 56899999999999999988863
No 20
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.82 E-value=1.7 Score=29.15 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHh
Q 021098 271 TNELENKVSRLEEENERLRKQK-ELEKMF 298 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~-elE~~~ 298 (317)
+..||.+|..|..+|..|..++ .|.+++
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5789999999999999988775 344443
No 21
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=79.22 E-value=0.22 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021098 243 EKTVERRQKRMIKNRESAARSRARKQA 269 (317)
Q Consensus 243 e~~~errqrRmikNReSA~rSR~RKka 269 (317)
+....|..||.-|||.+|+++|+||..
T Consensus 61 Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 61 QLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356778899999999999999999853
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=78.54 E-value=2.1 Score=28.66 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+..||.+|..|..+|..|..+++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 367899999999999999988763
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=77.94 E-value=3 Score=28.83 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e 291 (317)
....+||.+|+.|+.||.-|++-
T Consensus 17 ~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34579999999999999998864
No 24
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.86 E-value=1.4 Score=33.37 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
--.||..|+.++..|+++++.|+++|
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999874
No 25
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.22 E-value=3.3 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
--.||..|+.++..|++||..|+.+.+
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998753
No 26
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.61 E-value=3.2 Score=27.45 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
.+..||.||..|-.+|..|..+++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 468899999999999999988763
No 27
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=74.18 E-value=5.2 Score=25.71 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHh
Q 021098 271 TNELENKVSRLEEENERLRKQK-ELE 295 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~-elE 295 (317)
+..||++|.+.+.||-+|.++. +||
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4579999999999999998875 444
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.32 E-value=25 Score=27.51 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=35.4
Q ss_pred hHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHh
Q 021098 244 KTVERRQKRMI---KNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE-LEKMF 298 (317)
Q Consensus 244 ~~~errqrRmi---kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e-lE~~~ 298 (317)
+-.+||.+==+ +-|+.++.--.-.+..+.+||.+-..|+.+.+.|..+.. |-.+|
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555333 344444333333456678999999999999999999874 45555
No 29
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.75 E-value=5 Score=26.35 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+..||.||..|-.+|..|..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 5789999999999999998875
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.17 E-value=5.6 Score=30.11 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
--.||..|+.++..|+.|...|+++++
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999988874
No 31
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=68.43 E-value=3.5 Score=33.93 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.-+++|++++..|+-||..|+++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999873
No 32
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=66.76 E-value=8.1 Score=25.37 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+..||.||..|-.+|..|..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 5789999999999999988775
No 33
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=66.51 E-value=5.6 Score=26.31 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+..||.||..|-.+|..|..++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHH
Confidence 45789999999999999998775
No 34
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.97 E-value=5.8 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.++.||.+|..|-.+|..|..++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAV 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHH
Confidence 35789999999999999998775
No 35
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=65.90 E-value=5.8 Score=26.21 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+..||.||..|-.+|..|..++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHH
Confidence 35789999999999999998775
No 36
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.46 E-value=7.4 Score=27.67 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e 291 (317)
.|++.||.++..||.++..|...
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999888764
No 37
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.00 E-value=11 Score=28.67 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
-.+||..|+.+...|..|++.|+++++
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998874
No 38
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=62.69 E-value=4 Score=29.43 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRK 290 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~ 290 (317)
..|+.+||.+|..|+.....|..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999988876643
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.66 E-value=27 Score=38.16 Aligned_cols=28 Identities=43% Similarity=0.623 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 021098 268 QAYTNELENKVSRLEEENERLRKQK-ELE 295 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~-elE 295 (317)
+...++|+.+|+.|++||+.|+++. +||
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788889999999999998875 344
No 40
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=58.51 E-value=8.5 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 272 NELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~e~e 293 (317)
..|..-+..|+.||.+|+.+.|
T Consensus 2 dqlnallasleaenkqlkakve 23 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888888887753
No 41
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.52 E-value=26 Score=23.91 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~ 289 (317)
|.|+++||.+-..|+.-.+.|+
T Consensus 9 knyiqeleernaelknlkehlk 30 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHH
Confidence 5799999987776665555554
No 42
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=50.82 E-value=29 Score=22.87 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
++.||.||..|-.+|..|..+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 5789999999999988887764
No 43
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=50.27 E-value=6.1 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=19.8
Q ss_pred cccccccchhhccccHHHHHHHhh
Q 021098 84 RQASLSLTSALSKKTVDEVWRDIQ 107 (317)
Q Consensus 84 rQgSltLp~~ls~KTVDEVWrdI~ 107 (317)
.|..+++-++||+.|..+.|+-+-
T Consensus 4 ~qsd~siepPLSQETFsdLW~LLP 27 (39)
T 2k8f_B 4 PQSDPSVEPPLSQETFSDLWKLLP 27 (39)
T ss_dssp SCCCSSCCCCCSCHHHHHHHHTCS
T ss_pred cccccccCCCccHHHHHHHHHhCC
Confidence 355688889999999999999653
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.38 E-value=27 Score=26.62 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 266 RKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 266 RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
.|.+.+.+||.++...+++...|+.+
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999876
No 45
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.18 E-value=25 Score=25.04 Aligned_cols=25 Identities=4% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+|+.++...+..|..||..|+.+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888753
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.94 E-value=71 Score=24.34 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=35.0
Q ss_pred hHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHh
Q 021098 244 KTVERRQKRMI---KNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE-LEKMF 298 (317)
Q Consensus 244 ~~~errqrRmi---kNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e-lE~~~ 298 (317)
+-.+||.+==+ +-|+.++.--.--+..+.+||.+-..|+.+...|..+.. |-.+|
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555333 344444443344456678999999999999999988864 33344
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.35 E-value=34 Score=26.34 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
-..||..|+.+...|..+...|+++++
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999988888877777777653
No 48
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=42.06 E-value=7.4 Score=30.25 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=9.4
Q ss_pred ccHHHHHhhh
Q 021098 55 MNLDELLKNV 64 (317)
Q Consensus 55 MNmDElLknI 64 (317)
||||++|++|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 8999999998
No 49
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.39 E-value=24 Score=31.25 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.+.+|..++.+|.+||++|+++.
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999998874
No 50
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=40.05 E-value=76 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHH
Q 021098 265 ARKQAYTNELENKVSRL---EEENERLR 289 (317)
Q Consensus 265 ~RKkay~~eLE~kv~~L---e~EN~~L~ 289 (317)
++|++|+++|..+...+ -+.|+.+.
T Consensus 22 ~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999866544 34444443
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=37.69 E-value=37 Score=24.35 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 272 NELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+.|-.+|+.|+.||..|+++-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 567788999999999999874
No 52
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.09 E-value=44 Score=26.88 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
-+..|..++..|+.||.+|+++++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999998874
No 53
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=35.57 E-value=14 Score=26.89 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~ 289 (317)
+..|++.||.+|..||.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999988776653
No 54
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=35.26 E-value=29 Score=30.78 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e 291 (317)
..+.+|+++..+|.+||++|.++
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999876
No 55
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.17 E-value=48 Score=23.47 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e 291 (317)
..+|..++..|.+++++|+.+
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777765
No 56
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.63 E-value=64 Score=24.13 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 267 KQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 267 Kkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
|.+.+.+||..+..-..|+.+|+.+
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~ 47 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRK 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999876
No 57
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=32.43 E-value=14 Score=26.90 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=8.7
Q ss_pred ccccHHHHHH
Q 021098 95 SKKTVDEVWR 104 (317)
Q Consensus 95 s~KTVDEVWr 104 (317)
-.||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5699999995
No 58
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.22 E-value=0.88 Score=36.21 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q 021098 244 KTVERRQKRMIKNRESAARSRARKQ 268 (317)
Q Consensus 244 ~~~errqrRmikNReSA~rSR~RKk 268 (317)
...-+-.||.-|||.+|+++|+||.
T Consensus 62 l~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 62 LALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHhhhhHHHHHHcchhhc
Confidence 3556778899999999999999984
No 59
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.78 E-value=1.1e+02 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 021098 271 TNELENKVSRLEEENERLRKQKELEKM 297 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~elE~~ 297 (317)
++.|-.+++.|++.|.+|..+|.+=+-
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987554
No 60
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.62 E-value=1.4e+02 Score=21.61 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
.-+.+|+.+...|+.+...|+.+.
T Consensus 37 ~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998753
No 61
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.24 E-value=44 Score=24.47 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 021098 269 AYTNELENKVSRLEEENERLRKQKELEKM 297 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~elE~~ 297 (317)
.|+..||.++..||.....|.-...++.+
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~~~ 73 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLDMI 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhHHh
Confidence 58899999999999888877554444433
No 62
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.01 E-value=1.5e+02 Score=21.22 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+++|+.+...|+.+...|..++
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 63
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.90 E-value=38 Score=25.33 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERL 288 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L 288 (317)
.|+..||.+|..||.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48899999999988766554
No 64
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.55 E-value=76 Score=25.45 Aligned_cols=26 Identities=54% Similarity=0.648 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 269 AYTNELENKVSRLEEENERLRKQKEL 294 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e~el 294 (317)
+.+++|+.++..|..+.+.+.-++|+
T Consensus 67 ~~v~elqgEI~~Lnq~Lqda~~~~~~ 92 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELENLRIQKET 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888887777777666553
No 65
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.36 E-value=28 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=23.6
Q ss_pred hccccHHHHHHHhhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021098 94 LSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (317)
Q Consensus 94 ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TlGEMTLEdFLvrAGVV 139 (317)
++...++++|+++-..+ -|.++++||+.--..+
T Consensus 53 l~~~el~~i~~~~D~d~-------------dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 53 LSIPELSYIWELSDADC-------------DGALTLPEFCAAFHLI 85 (110)
T ss_dssp CSSCCHHHHHHHHCSSS-------------CSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC-------------CCcCcHHHHHHHHHHH
Confidence 45678999999873322 2789999998755443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.88 E-value=1.5e+02 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 263 SRARKQAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 263 SR~RKkay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
-|.|.+++++..-.+++.|++||++|+++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 455566777777788888889998888764
No 67
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=28.24 E-value=61 Score=23.58 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=18.1
Q ss_pred hhccccHHHHHHHhhhccCCCCCCccccccccccchHHHHHH
Q 021098 93 ALSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLV 134 (317)
Q Consensus 93 ~ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TlGEMTLEdFLv 134 (317)
.++...++++|+.+-..+ =|.++++||+.
T Consensus 77 ~~~~~~~~~~~~~~D~~~-------------dg~i~~~EF~~ 105 (109)
T 3fs7_A 77 VLTSAETKAFLAAGDTDG-------------DGKIGVEEFQS 105 (109)
T ss_dssp CCCHHHHHHHHHHHCTTC-------------SSSBCHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC-------------CCcCcHHHHHH
Confidence 345556677777663221 16789999974
No 68
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.97 E-value=74 Score=23.10 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021098 273 ELENKVSRLEEENERLRK 290 (317)
Q Consensus 273 eLE~kv~~Le~EN~~L~~ 290 (317)
.|-.+|..|+.||.+|++
T Consensus 14 aLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777777765
No 69
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.75 E-value=22 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=23.3
Q ss_pred hccccHHHHHHHhhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021098 94 LSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (317)
Q Consensus 94 ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TlGEMTLEdFLvrAGVV 139 (317)
++..+++++|+++-..+ -|.++.+||+.--..+
T Consensus 42 l~~~~l~~i~~~~D~d~-------------dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 42 LPDLILGKIWDLADTDG-------------KGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCHHHHHHHHHHHCCSS-------------SSSCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC-------------CCcCCHHHHHHHHHHH
Confidence 34678999999873322 2789999998765544
No 70
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.66 E-value=1.2e+02 Score=23.60 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Q 021098 269 AYTNELENKVSRLEEENERLRKQ-KELEK 296 (317)
Q Consensus 269 ay~~eLE~kv~~Le~EN~~L~~e-~elE~ 296 (317)
+.+.+.|.+.+.|+..|..|... .|||.
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44456677888888888887665 46664
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.96 E-value=71 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
-++.|+.+++.|+++|.+|+.-.
T Consensus 54 ~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777776543
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.09 E-value=1.7e+02 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLR 289 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~ 289 (317)
++.+++|+.++..|.++.+.+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777766665544433
No 73
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.04 E-value=1.8e+02 Score=26.56 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=11.0
Q ss_pred HHHHHHhHHHH-HHHHHHHHHH
Q 021098 250 QKRMIKNRESA-ARSRARKQAY 270 (317)
Q Consensus 250 qrRmikNReSA-~rSR~RKkay 270 (317)
.-.-|+|||.. +.+|.||+.-
T Consensus 95 ~LK~IR~~E~svqp~R~~R~~l 116 (234)
T 3plt_A 95 TLKSIRNIEASVQPSRDRKEKI 116 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 33456777765 4445554433
No 74
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.97 E-value=56 Score=26.42 Aligned_cols=18 Identities=61% Similarity=0.916 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021098 273 ELENKVSRLEEENERLRK 290 (317)
Q Consensus 273 eLE~kv~~Le~EN~~L~~ 290 (317)
+||.+++.|++||.+|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577788888887777765
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.90 E-value=94 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021098 270 YTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 270 y~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
-+..|+.++..|+.+|..|+.+.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888764
No 76
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=24.32 E-value=24 Score=27.28 Aligned_cols=50 Identities=18% Similarity=-0.025 Sum_probs=31.5
Q ss_pred cccchhhccccHHHHHHHhhh---ccCCCCCCccccc----cccccchHHHHHHHhcc
Q 021098 88 LSLTSALSKKTVDEVWRDIQQ---SKSSGEKKPRDRQ----ATLGEMTLEDFLVKAGV 138 (317)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~---~~~~~~~~~~~rQ----~TlGEMTLEdFLvrAGV 138 (317)
+.||..-..=|.+.|+.=|.= +-+-.+.+ ..+- ..|=.||.|||+.+++.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLD-FDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCC-GGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCC-hhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 456777777888888876653 21112121 1232 34568999999999984
No 77
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=23.88 E-value=33 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=23.1
Q ss_pred hccccHHHHHHHhhhccCCCCCCccccccccccchHHHHHHHhccc
Q 021098 94 LSKKTVDEVWRDIQQSKSSGEKKPRDRQATLGEMTLEDFLVKAGVV 139 (317)
Q Consensus 94 ls~KTVDEVWrdI~~~~~~~~~~~~~rQ~TlGEMTLEdFLvrAGVV 139 (317)
++..+++++|+.+-..+ -|.++.+||++---.+
T Consensus 45 l~~~el~~i~~~~D~d~-------------dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDH-------------DGMLDRDEFAVAMFLV 77 (106)
T ss_dssp CCHHHHHHHHHHHCSSC-------------SSBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC-------------CCcCcHHHHHHHHHHH
Confidence 34668999999873332 2789999998765444
No 78
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=26 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=28.9
Q ss_pred cccchhhccccHHHHHHHhhh---ccCCCCCCcccccc----ccccchHHHHHHHhcc
Q 021098 88 LSLTSALSKKTVDEVWRDIQQ---SKSSGEKKPRDRQA----TLGEMTLEDFLVKAGV 138 (317)
Q Consensus 88 ltLp~~ls~KTVDEVWrdI~~---~~~~~~~~~~~rQ~----TlGEMTLEdFLvrAGV 138 (317)
+.+|..-..=|.+.|+.=|.- +-+-.... ..++. .|=.||.|||+.+|+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRLPPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTCCCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCCCCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 445666666666777664442 21111121 13333 4558999999999974
No 79
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=21.99 E-value=53 Score=23.45 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021098 260 AARSRARKQAYTNELEN 276 (317)
Q Consensus 260 A~rSR~RKkay~~eLE~ 276 (317)
...||.-||+|+++|-.
T Consensus 14 S~LS~~~K~sYi~~L~~ 30 (53)
T 1r4g_A 14 SPLSRAEKAAYVKSLSK 30 (53)
T ss_dssp SCCCSHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHH
Confidence 44678889999999964
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.26 E-value=1.2e+02 Score=28.80 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 260 AARSRARKQAYTNELENKVSRLEEENERLRKQKE 293 (317)
Q Consensus 260 A~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e~e 293 (317)
+..|..-| .++|||.++..|+.+.+.++.+.+
T Consensus 436 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQK--KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
No 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.47 E-value=3.3e+02 Score=23.58 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 249 RQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 249 rqrRmikNReSA~rSR~RKkay~~eLE~kv~~Le~EN~~L~~e 291 (317)
....+..--+.=++.|.+-.+.+.+|+.++..|+.|..+++..
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455567778888888999999999999999888763
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.41 E-value=2.3e+02 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021098 271 TNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 271 ~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
+..|+.+...|..+...|+.++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655554
No 83
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.27 E-value=1.7e+02 Score=19.43 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021098 276 NKVSRLEEENERLRKQK 292 (317)
Q Consensus 276 ~kv~~Le~EN~~L~~e~ 292 (317)
.+|..||.+|..|..+.
T Consensus 20 dkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999999987763
No 84
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.21 E-value=1.1e+02 Score=21.62 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021098 272 NELENKVSRLEEENERLRKQ 291 (317)
Q Consensus 272 ~eLE~kv~~Le~EN~~L~~e 291 (317)
++||..+...+..+.+|..+
T Consensus 17 eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 67777666666666666554
No 85
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.02 E-value=1.6e+02 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021098 268 QAYTNELENKVSRLEEENERLRKQK 292 (317)
Q Consensus 268 kay~~eLE~kv~~Le~EN~~L~~e~ 292 (317)
++....|+.+++.|.++.++|.++.
T Consensus 110 ~~~~~~l~~~~~~l~~~l~~le~~~ 134 (139)
T 3eff_K 110 KAAEEAYTRTTRALHERFDRLERML 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777776553
Done!