BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021099
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 137 GGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 195
G N + SH+VGV GA R++LVVQ+ R + +WKFP G+ + EDI
Sbjct: 14 GTENLYFQSMSHQVGVAGAVFDESTRKILVVQD---RNKLKNMWKFPGGLSEPEEDIGDT 70
Query: 196 AVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSDIFFLCMLRPLSFDIQKQESEIEAAE 253
AVREV EET I +EF VL+ RQ H + F KSD++ +C L+P SF I + E E
Sbjct: 71 AVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCE 130
Query: 254 WMPLEEYA 261
WM L + A
Sbjct: 131 WMDLNDLA 138
>pdb|3FXT|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|G Chain G, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
pdb|3FXT|H Chain H, Crystal Structure Of The N-Terminal Domain Of Human Nudt6
Length = 113
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 57 LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLV 111
L G D +GG+ V++ + +D F L++++ WR + + VW+ +PI + +
Sbjct: 25 LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFI 84
Query: 112 EPAVKEGFWFHHAEPNYLMLVYWIPGG 138
PA GF FHHAE + L W+ G
Sbjct: 85 APAASLGFCFHHAESDSSTLTLWLREG 111
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 209
+G G V N KREVL++++ G W FP G + GE + AAVREV EET + E
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 210 FV 211
+
Sbjct: 57 VL 58
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 209
+G G V N KREVL++++ G W FP G + GE + AAVREV E+T + E
Sbjct: 3 LGAGGVVFNAKREVLLLRDR------MGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 210 FV 211
+
Sbjct: 57 VL 58
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 153 GAFVMNGKREVLVVQENS--GRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 210
G ++N + ++L+VQE G G+W P+G V++GE+ AAVRE EET +
Sbjct: 17 GVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRP 76
Query: 211 VEVLA 215
V+ L
Sbjct: 77 VKFLG 81
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 136 PGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVA 195
P G+ P +R VG +MN +++ + R W+ P G +DEGED A
Sbjct: 2 PLGSMDSPPEG-YRRNVGICLMNNDKKIFA----ASRLDIPDAWQMPQGGIDEGEDPRNA 56
Query: 196 AVREVKEETSIDTEFVEVLA 215
A+RE++EET + + EV+A
Sbjct: 57 AIRELREETGVTS--AEVIA 74
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 136 PGGANTLPANASHRVG--VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDIC 193
P G P V V A ++ + EVL++QE RG+ W P G ++ GE I
Sbjct: 5 PAGEPPAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGS--WYLPAGRMEPGETIV 62
Query: 194 VAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEA-- 251
A REVKEE + E +L+ + S+ + F+ + RP + I K E +A
Sbjct: 63 EALQREVKEEAGLHCEPETLLSVEERGPSW-----VRFVFLARP-TGGILKTSKEADAES 116
Query: 252 --AEWMP 256
A W P
Sbjct: 117 LQAAWYP 123
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 162 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ 221
++L+VQEN G +W P G D + + V+EVKEE +D E V+A H+
Sbjct: 82 KILLVQENDG------LWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK 135
Query: 222 SFFEKS-----DIFFLCML 235
+ KS +F LC L
Sbjct: 136 NNPAKSAHRVTKVFILCRL 154
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 138 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 197
G ++P +S + V +++ VL+ Q G+ G+W+FP G V++GE + +
Sbjct: 18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSL-AGLWEFPGGKVEQGETPEASLI 76
Query: 198 REVKEETSIDTE 209
RE++EE + +
Sbjct: 77 RELEEELGVHVQ 88
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-- 209
A +++ VL+ Q G+ G+W+FP G ++ GE A VRE+ EE +DT
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSL-AGLWEFPGGKLEPGETPEAALVRELAEELGVDTRAS 69
Query: 210 FVEVLAFRQSHQSFFEKSDIFFLC 233
+ LAF F + C
Sbjct: 70 CLAPLAFASHSYDTFHLLXPLYAC 93
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 157 MNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 216
+ GK E L++Q + W P G VD GED AA+RE KEE +I E ++
Sbjct: 14 LAGKIEFLLLQASYPPHH----WTPPKGHVDPGEDEWQAAIRETKEEANITKE--QLTIH 67
Query: 217 RQSHQSFF 224
H++ F
Sbjct: 68 EDCHETLF 75
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 175 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCM 234
G + P G+++ GED AA RE+ EET + + + ++ S EK+ +F
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYLFSYFVSPGFTDEKTHVFLAEN 117
Query: 235 LRPLSFDIQKQESEIEAAE--WMPLEE 259
L+ +++ E EA E WM EE
Sbjct: 118 LK----EVEAHPDEDEAIEVVWMRPEE 140
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 207
+ V + + KR +++ + + F W+ TG V+EGE AA+REVKEE +ID
Sbjct: 12 ILVVIYAQDTKRVLMLQRRDDPDF-----WQSVTGSVEEGETAPQAAMREVKEEVTID 64
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 138 GANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 197
G ++ RVG GA ++ R +L+ ++ R G W P G VD E + A
Sbjct: 18 GPGSMQHTEQPRVGCGAAIVRDGRILLIKRK---RAPEAGCWGLPGGKVDWLEPVERAVC 74
Query: 198 REVKEETSIDTEFVEVLAF 216
RE++EE I E +L
Sbjct: 75 REIEEELGIALERATLLCV 93
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 154 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
A V++ + + LVV+E G +W P G ++ E + AA RE+ EET I +
Sbjct: 9 ACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF 65
Query: 214 LAFRQSHQSFFEKSDIFFLCMLRPLSFD----IQKQESEIEAAEWMPLEE 259
+ Q + FL L + + Q +S+I+ W+ EE
Sbjct: 66 IRMHQ----WIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEE 111
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Query: 135 IPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVD-EGEDIC 193
+PGG H V M+ + +V + + G +W+ P G++D GE
Sbjct: 29 MPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTY-GRRLWELPAGLLDVAGEPPH 87
Query: 194 VAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS-DIFFLCMLRPLSFDIQKQESEIEAA 252
+ A RE++EE + +VL + F ++S ++ LR + E
Sbjct: 88 LTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTM 147
Query: 253 EWMPLEEYAAQPYVQNQELLK--YIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHYF 307
W P+ E A + V E++ I + + T G+ P P + + D+ F
Sbjct: 148 GWYPIAEAARR--VLRGEIVNSIAIAGVLAVHAVTTGF--AQPRPLDTEWIDRPTAF 200
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 175 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCM 234
G + P G+++ GED AA RE+ E+T + + + ++ S EK+ +F
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYFVSPGFTDEKTHVFLAEN 117
Query: 235 LRPLSFDIQKQESEIEAAE--WMPLEE 259
L+ +++ E EA E WM EE
Sbjct: 118 LK----EVEAHPDEDEAIEVVWMRPEE 140
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 175 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCM 234
G + P G+++ GED AA R++ EET + + + ++ S EK+ +F
Sbjct: 58 GLAPLEIPAGLIEPGEDPLEAARRQLAEETGLSGDLTYLFSYFVSPGFTDEKTHVFLAEN 117
Query: 235 LRPLSFDIQKQESEIEAAE--WMPLEE 259
L+ +++ E EA E WM EE
Sbjct: 118 LK----EVEAHPDEDEAIEVVWMRPEE 140
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
Complexed With A Magnesium Ion
Length = 194
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 154 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
A VL+ +S G FP G +D GE AA+RE +EE ++D V +
Sbjct: 41 ALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL 100
Query: 214 LAFRQSHQSFFEKSDIF---------FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 264
L E D+F L + P + D + E+ L E A P
Sbjct: 101 LG---------ELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVP 151
Query: 265 YVQNQELL 272
V+ + L
Sbjct: 152 LVRERRTL 159
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 162 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 215
EVL+++ S +W FP G ++ GE AVREV EET + E ++ +
Sbjct: 16 EVLLIKTPSN------VWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIG 63
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 206
+ V A + N K E L+++ + G W P G V+ E + REV EET I
Sbjct: 9 ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 145 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 204
+ +R VG + N + +V+ + RF G W+FP G ++ GE A RE+ EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRELFEEV 58
Query: 205 SIDTEFVEVLA 215
+ + V +LA
Sbjct: 59 GLSRKDVRILA 69
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 156 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 215
V N E L++Q + G W P G V+ GED A+RE +EE I+ + ++
Sbjct: 19 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIE 74
Query: 216 FRQSHQSFFE----KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEE 259
+ ++ K+ I++L ++ +I + E +A W+ LEE
Sbjct: 75 GFKRELNYVARNKPKTVIYWLAEVKDYDVEI-RLSHEHQAYRWLGLEE 121
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGI-WKFPTGVVDEGEDICVAAVREVKEETSIDT 208
+ V A V+ + L VQ +F T ++FP G V+EGE + A RE+ EE
Sbjct: 6 IEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVI 65
Query: 209 EFVEVLAFRQSHQSFFEKSDIFFLC 233
E E L FE + FLC
Sbjct: 66 EVGEKLLTVHHTYPDFEITMHAFLC 90
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 179 WKFPTGVVDEGEDICVAAVREVKEETSID-TEFVEVLAFRQSHQSFFEKSDIFFLCMLRP 237
W FP G + + E+ +REVKEE D T++++ F + ++ K+ FL
Sbjct: 30 WSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIE--RNIQGKNYKIFLISGVS 87
Query: 238 LSFDIQKQ-ESEIEAAEWMPLEEYAAQPYVQN 268
F+ + Q +EI+ EW ++ + Y N
Sbjct: 88 EVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN 119
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 177 GIWKFPTGVVDEGEDICVAAVREVKEETSI 206
G W P G VDE E AA RE++EETS+
Sbjct: 67 GKWAVPGGFVDENESAEQAAERELEEETSL 96
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 173 FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 207
++ + W FP G +D+ E A+REV EET D
Sbjct: 122 WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 173 FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 207
++ + W FP G +D+ E A+REV EET D
Sbjct: 117 WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 151
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 209
V V A V+ +L+VQ + G +W P G ++ E I A +RE+ EET+I+
Sbjct: 209 VTVDALVIVNDH-ILMVQRKA--HPGKDLWALPGGFLECDETIAQAIIRELFEETNINLT 265
Query: 210 FVEVLAFRQSHQSFFEKSD 228
E LA + + F+ D
Sbjct: 266 H-EQLAIAKRCEKVFDYPD 283
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 176 TGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
G W+FP G ++ GE A RE+ EE I+ E E+
Sbjct: 47 AGQWEFPGGKIENGETPEEALARELNEELGIEAEVGEL 84
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 180 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
+FP G++D+GE AA+RE++EET + E
Sbjct: 95 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 128
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 156 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 215
V N E L++Q + G W P G V+ GED A+R +EE I+ + ++
Sbjct: 24 VDNNAIEFLLLQASDGIHH----WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIE 79
Query: 216 FRQSHQSFFE----KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEE 259
+ ++ K+ I++L ++ +I + E +A W+ LEE
Sbjct: 80 GFKRELNYVARNKPKTVIYWLAEVKDYDVEI-RLSHEHQAYRWLGLEE 126
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 158 NGKREVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLA 215
+ + +VL+VQ ++ F G+W P G +DE E + +R++ E+T++ ++E L
Sbjct: 34 DQQLKVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC 91
Query: 216 FRQSHQSFFEKSDIFFLCMLRPLSFD-IQKQESEIEAAEWMPLEEYAAQP 264
+ S + +C +S+ Q Q + + +W PL + P
Sbjct: 92 -TVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMP 140
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 180 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
+FP G++D+GE AA+RE++EET + E
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 180 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
+FP G++D+GE AA+RE++EET + E
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 180 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
+FP G++D+GE AA+RE++EET + E
Sbjct: 81 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 114
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 180 KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 213
+FP G++D+GE AA+RE++EET + E
Sbjct: 80 EFPAGLIDDGETPEAAALRELEEETGYKGDIAEC 113
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 162 EVLVVQENSGRFRGTGIWKFPTGVVDE--GEDICVAAVREVKEETSIDTEFVEVLAFRQS 219
+VL+VQ ++ F G+W P G +DE E + +R++ E+T++ ++E L
Sbjct: 38 KVLLVQRSNHPF--LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLC-TVG 94
Query: 220 HQSFFEKSDIFFLCMLRPLSFD-IQKQESEIEAAEWMPLEEYAAQP 264
+ S + +C +S+ Q Q + + +W PL + P
Sbjct: 95 NNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMP 140
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 162 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 206
+VL++Q FR + W P G V+ E + +RE KEET +
Sbjct: 57 KVLLIQRKGHPFRNS--WALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 145 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 204
+ +R VG + N + +V+ + RF G W+FP G ++ GE A R + EE
Sbjct: 4 DDGYRPNVGIVICNRQGQVMWAR----RF-GQHSWQFPQGGINPGESAEQAMYRALFEEV 58
Query: 205 SIDTEFVEVLA 215
+ + V +LA
Sbjct: 59 GLSRKDVRILA 69
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 209
V A + N + E+L ++ G W P G ++ GE A +REV EET + +
Sbjct: 24 VAAVIKNEQGELLF------QYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQ 75
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 143 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKE 202
P + + V A ++ ++L+ Q + G+W+F G V+ E A VRE++E
Sbjct: 2 PLGSMKMIEVVAAIIERDGKILLAQ-RPAQSDQAGLWEFAGGKVEPDESQRQALVRELRE 60
Query: 203 ETSIDTEFVEVLAFRQ 218
E I+ E +A Q
Sbjct: 61 ELGIEATVGEYVASHQ 76
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 175 GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF 223
G + + P G VDEGE AA RE++EE + E + L SF
Sbjct: 66 GKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSF 114
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 181 FPTGVVDEGEDICVAAVREVKEETSI---DTEFVEVLAFRQSHQSFFEKSDIFFLCMLRP 237
F G++D GE + AA RE+KEE D F++ L+ S+ F K +I L P
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSY--FSSKMNIVVAQDLYP 136
Query: 238 LSFDIQKQE 246
S + + E
Sbjct: 137 ESLEGDEPE 145
>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 181 FPTGVVDEGEDICVAAVREVKEETSI---DTEFVEVLAFRQSHQSFFEKSDIFFLCMLRP 237
F G++D GE + AA RE+KEE D F++ L+ S+ F K +I L P
Sbjct: 79 FSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSXAPSY--FSSKXNIVVAQDLYP 136
Query: 238 LSFDIQKQE 246
S + + E
Sbjct: 137 ESLEGDEPE 145
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 208
+V + A V ++ + V +++ G+ W P G D G A +EV EET +
Sbjct: 68 KVDIRAVVFQNEKLLFVKEKSDGK------WALPGGWADVGYTPTEVAAKEVFEETGYEV 121
Query: 209 EFVEVLAF--RQSHQ 221
+ ++LA ++ HQ
Sbjct: 122 DHFKLLAIFDKEKHQ 136
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 208
+V + A V ++ + V +++ G+ W P G D G A +EV EET +
Sbjct: 68 KVDIRAVVFQNEKLLFVKEKSDGK------WALPGGWADVGYTPTEVAAKEVFEETGYEV 121
Query: 209 EFVEVLAF--RQSHQ 221
+ ++LA ++ HQ
Sbjct: 122 DHFKLLAIFDKEKHQ 136
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 160 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 215
+ +VL+ + +RG W P G + E + A RE EE + E E+ A
Sbjct: 50 ENKVLLCKRAIAPYRGK--WTLPAGFXENNETLVQGAARETLEEANARVEIRELYA 103
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 179 WK----FPTGVVDEGEDICVAAVREVKEETSI 206
WK FP G V+ GE AA+REV EET +
Sbjct: 35 WKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|1I17|A Chain A, Nmr Structure Of Mouse Doppel 51-157
Length = 107
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 153 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEG 189
GAF+ G++ + R+ W+FP G+ EG
Sbjct: 8 GAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEG 44
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 153 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 209
G V NGK VL+V + + G++ +P G V+ E A RE +EET I E
Sbjct: 6 GVLVENGK--VLLV-----KHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 247 SEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHY 306
SE EW E YA+QP E+L+YI + + K D R F T +AF + +
Sbjct: 77 SEEVLQEWNWTERYASQP-----EILRYI-NFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 307 FYLNS 311
+ +++
Sbjct: 131 WTVDT 135
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 247 SEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHY 306
SE EW E YA+QP E+L+YI + + K D R F T +AF + +
Sbjct: 77 SEEVLQEWNWTERYASQP-----EILRYI-NFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 307 FYLNS 311
+ +++
Sbjct: 131 WTVDT 135
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 247 SEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHY 306
SE EW E YA+QP E+L+YI + + K D R F T +AF + +
Sbjct: 77 SEEVLQEWNWTERYASQP-----EILRYI-NFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 307 FYLNS 311
+ +++
Sbjct: 131 WTVDT 135
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 247 SEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYHGFSPVPTTSAFSDKKHY 306
SE EW E YA+QP E+L+YI + + K D R F T +AF + +
Sbjct: 77 SEEVLQEWNWTERYASQP-----EILRYI-NFVADKFDLRSGITFHTTVTAAAFDEATNT 130
Query: 307 FYLNS 311
+ +++
Sbjct: 131 WTVDT 135
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 208
R F + EVL+V +S R+ W P G ++ E+ AAVREV EE +
Sbjct: 4 RAACLCFRSEREDEVLLV--SSSRY--PDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKG 59
Query: 209 EFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEE 259
+ +L + +Q ++ ++ L + L D + S EW +E+
Sbjct: 60 KLGRLLGVFEQNQDPEHRTYVYVLTVTELLE-DWEDSVSIGRKREWFKVED 109
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSI 206
R F + EVL+V + R W P G ++ E+ VAAVREV EE +
Sbjct: 42 RAACLCFRSESEEEVLLVSSS----RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,254,402
Number of Sequences: 62578
Number of extensions: 369405
Number of successful extensions: 789
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 61
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)