Query 021099
Match_columns 317
No_of_seqs 350 out of 2184
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 1.9E-45 4.1E-50 334.6 13.1 261 53-314 18-281 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 3.8E-22 8.3E-27 163.6 14.2 125 148-277 1-125 (127)
3 cd04679 Nudix_Hydrolase_20 Mem 99.9 1.2E-20 2.6E-25 154.3 13.3 113 148-263 1-115 (125)
4 cd03671 Ap4A_hydrolase_plant_l 99.8 9.5E-20 2.1E-24 153.6 14.7 126 148-277 2-145 (147)
5 PRK00714 RNA pyrophosphohydrol 99.8 1.4E-19 3E-24 154.3 15.0 129 147-279 6-151 (156)
6 cd03430 GDPMH GDP-mannose glyc 99.8 1.3E-19 2.9E-24 152.4 14.6 115 147-265 10-134 (144)
7 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.6E-19 3.4E-24 148.3 13.8 115 148-264 1-118 (129)
8 PLN02325 nudix hydrolase 99.8 1.4E-19 3.1E-24 152.3 13.6 119 144-265 4-127 (144)
9 PRK09438 nudB dihydroneopterin 99.8 8.6E-20 1.9E-24 153.8 12.2 120 148-274 6-141 (148)
10 cd04680 Nudix_Hydrolase_21 Mem 99.8 1.5E-19 3.3E-24 146.1 12.9 108 151-265 2-110 (120)
11 PRK15434 GDP-mannose mannosyl 99.8 2.6E-19 5.6E-24 153.1 14.6 114 148-265 16-139 (159)
12 cd04684 Nudix_Hydrolase_25 Con 99.8 2.5E-19 5.5E-24 146.1 13.3 113 151-266 2-120 (128)
13 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1.5E-19 3.3E-24 149.9 12.0 118 148-266 1-118 (137)
14 PF00293 NUDIX: NUDIX domain; 99.8 2E-19 4.4E-24 147.1 12.3 119 149-267 2-123 (134)
15 cd04669 Nudix_Hydrolase_11 Mem 99.8 6.2E-19 1.3E-23 143.8 14.1 110 151-267 2-118 (121)
16 cd04700 DR1025_like DR1025 fro 99.8 6.2E-19 1.3E-23 147.9 14.4 116 148-266 12-128 (142)
17 cd03673 Ap6A_hydrolase Diadeno 99.8 3.4E-19 7.3E-24 145.9 12.5 109 150-265 2-118 (131)
18 cd04681 Nudix_Hydrolase_22 Mem 99.8 4.2E-19 9.1E-24 145.8 12.5 107 151-261 3-113 (130)
19 cd04673 Nudix_Hydrolase_15 Mem 99.8 5.9E-19 1.3E-23 142.9 12.8 112 150-267 1-118 (122)
20 cd04682 Nudix_Hydrolase_23 Mem 99.8 4.1E-19 8.9E-24 144.7 11.8 113 152-265 3-116 (122)
21 cd04677 Nudix_Hydrolase_18 Mem 99.8 6.3E-19 1.4E-23 144.9 12.6 112 148-266 6-125 (132)
22 PRK15472 nucleoside triphospha 99.8 9.8E-19 2.1E-23 146.1 14.0 114 152-266 6-128 (141)
23 cd04696 Nudix_Hydrolase_37 Mem 99.8 8.5E-19 1.8E-23 143.4 13.1 111 149-266 2-117 (125)
24 cd03675 Nudix_Hydrolase_2 Cont 99.8 1.9E-18 4.1E-23 142.8 14.5 128 150-282 1-130 (134)
25 cd03674 Nudix_Hydrolase_1 Memb 99.8 1.4E-18 3.1E-23 144.8 13.7 110 150-266 3-126 (138)
26 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.9E-18 4.2E-23 139.9 13.9 112 151-265 2-116 (120)
27 cd04687 Nudix_Hydrolase_28 Mem 99.8 2E-18 4.4E-23 141.7 13.9 114 149-266 1-124 (128)
28 cd03427 MTH1 MutT homolog-1 (M 99.8 2.2E-18 4.7E-23 142.8 14.2 119 152-276 4-125 (137)
29 cd04691 Nudix_Hydrolase_32 Mem 99.8 2E-18 4.4E-23 139.9 13.2 108 152-265 3-110 (117)
30 PRK10546 pyrimidine (deoxy)nuc 99.8 4.8E-18 1E-22 140.4 15.6 123 151-278 5-128 (135)
31 cd04672 Nudix_Hydrolase_14 Mem 99.8 3.3E-18 7.1E-23 139.6 13.9 109 149-266 2-115 (123)
32 cd04671 Nudix_Hydrolase_13 Mem 99.8 3.7E-18 8E-23 139.9 14.1 109 151-265 2-111 (123)
33 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.3E-18 2.8E-23 142.8 11.4 112 151-265 2-114 (126)
34 PRK10776 nucleoside triphospha 99.8 7.3E-18 1.6E-22 137.5 15.8 120 151-275 6-126 (129)
35 cd04676 Nudix_Hydrolase_17 Mem 99.8 3.9E-18 8.6E-23 138.7 13.9 111 149-266 2-120 (129)
36 cd03672 Dcp2p mRNA decapping e 99.8 1E-18 2.2E-23 147.3 10.6 110 151-266 3-114 (145)
37 cd03426 CoAse Coenzyme A pyrop 99.8 2E-18 4.3E-23 147.3 12.1 113 151-264 4-119 (157)
38 cd03429 NADH_pyrophosphatase N 99.8 3.1E-18 6.8E-23 141.7 12.5 122 151-279 2-128 (131)
39 cd04699 Nudix_Hydrolase_39 Mem 99.8 3.2E-18 6.8E-23 139.8 11.7 114 150-266 2-117 (129)
40 COG1051 ADP-ribose pyrophospha 99.8 8.8E-18 1.9E-22 141.6 14.4 118 145-266 6-125 (145)
41 TIGR00586 mutt mutator mutT pr 99.8 2.1E-17 4.6E-22 134.9 15.6 120 149-273 4-124 (128)
42 cd04688 Nudix_Hydrolase_29 Mem 99.8 1.1E-17 2.4E-22 136.9 13.8 111 151-267 3-122 (126)
43 cd04511 Nudix_Hydrolase_4 Memb 99.8 1.1E-17 2.4E-22 137.9 13.5 111 143-261 7-117 (130)
44 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.2E-17 2.7E-22 136.4 13.2 109 150-264 2-115 (125)
45 PRK00241 nudC NADH pyrophospha 99.8 1.7E-17 3.7E-22 152.2 15.5 132 140-281 123-254 (256)
46 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.3E-17 2.7E-22 134.7 12.5 106 152-266 3-113 (118)
47 cd04664 Nudix_Hydrolase_7 Memb 99.8 6.9E-18 1.5E-22 138.6 11.1 111 151-266 3-121 (129)
48 cd03425 MutT_pyrophosphohydrol 99.8 3E-17 6.5E-22 132.3 14.5 117 152-273 4-121 (124)
49 cd04693 Nudix_Hydrolase_34 Mem 99.8 5.6E-18 1.2E-22 138.9 10.1 111 151-265 2-115 (127)
50 PLN03143 nudix hydrolase; Prov 99.7 4.8E-17 1E-21 150.9 17.2 221 41-265 18-267 (291)
51 cd03428 Ap4A_hydrolase_human_l 99.7 1.3E-17 2.9E-22 136.8 11.6 109 150-266 3-118 (130)
52 PRK11762 nudE adenosine nucleo 99.7 1.6E-17 3.4E-22 145.5 12.2 115 150-266 48-162 (185)
53 PRK15393 NUDIX hydrolase YfcD; 99.7 4.1E-17 8.8E-22 142.4 13.9 111 150-263 38-149 (180)
54 cd04686 Nudix_Hydrolase_27 Mem 99.7 2.6E-17 5.6E-22 136.1 11.7 107 151-263 2-119 (131)
55 cd04667 Nudix_Hydrolase_10 Mem 99.7 5E-17 1.1E-21 130.5 12.6 100 156-267 6-105 (112)
56 cd04692 Nudix_Hydrolase_33 Mem 99.7 2.3E-17 5E-22 138.5 11.1 113 151-263 4-127 (144)
57 cd04695 Nudix_Hydrolase_36 Mem 99.7 4E-17 8.6E-22 134.8 11.9 113 158-275 11-127 (131)
58 cd04694 Nudix_Hydrolase_35 Mem 99.7 6.1E-17 1.3E-21 136.2 12.2 114 150-263 2-131 (143)
59 cd04666 Nudix_Hydrolase_9 Memb 99.7 7.1E-17 1.5E-21 132.1 12.0 107 152-265 3-117 (122)
60 cd02885 IPP_Isomerase Isopente 99.7 1.1E-16 2.3E-21 137.7 10.8 115 149-266 30-151 (165)
61 PRK05379 bifunctional nicotina 99.7 2.5E-16 5.4E-21 150.4 14.1 113 148-263 202-322 (340)
62 PRK03759 isopentenyl-diphospha 99.7 3.3E-16 7.1E-21 137.1 12.9 115 149-266 34-155 (184)
63 cd04685 Nudix_Hydrolase_26 Mem 99.7 3.2E-16 6.9E-21 130.2 11.6 113 151-263 2-123 (133)
64 TIGR00052 nudix-type nucleosid 99.7 3.2E-16 6.9E-21 137.3 11.0 120 147-266 42-168 (185)
65 cd02883 Nudix_Hydrolase Nudix 99.7 1.2E-15 2.6E-20 121.9 13.5 112 151-266 2-115 (123)
66 PRK10729 nudF ADP-ribose pyrop 99.7 2.1E-15 4.5E-20 133.9 14.8 120 147-266 47-174 (202)
67 PRK10707 putative NUDIX hydrol 99.7 1.3E-15 2.9E-20 133.9 13.4 116 148-264 29-147 (190)
68 TIGR02150 IPP_isom_1 isopenten 99.6 1E-15 2.3E-20 130.7 11.0 111 150-265 28-144 (158)
69 cd04661 MRP_L46 Mitochondrial 99.6 8.1E-16 1.8E-20 127.4 9.7 99 159-264 11-121 (132)
70 PRK15009 GDP-mannose pyrophosp 99.6 5E-15 1.1E-19 130.3 13.7 120 146-266 42-169 (191)
71 PRK08999 hypothetical protein; 99.6 6.4E-15 1.4E-19 138.9 14.9 119 151-274 7-126 (312)
72 cd03676 Nudix_hydrolase_3 Memb 99.6 5.9E-15 1.3E-19 128.5 12.0 113 150-263 35-158 (180)
73 cd04674 Nudix_Hydrolase_16 Mem 99.6 3.7E-14 8E-19 115.4 14.3 57 151-210 6-62 (118)
74 cd04665 Nudix_Hydrolase_8 Memb 99.6 3.8E-14 8.2E-19 115.4 12.9 101 151-260 2-102 (118)
75 TIGR02705 nudix_YtkD nucleosid 99.6 2.2E-13 4.7E-18 115.9 17.5 107 148-266 23-130 (156)
76 cd04662 Nudix_Hydrolase_5 Memb 99.6 5.1E-14 1.1E-18 115.4 12.7 105 151-257 2-126 (126)
77 PLN02709 nudix hydrolase 99.5 9.1E-14 2E-18 124.1 12.1 104 161-264 51-156 (222)
78 COG2816 NPY1 NTP pyrophosphohy 99.5 2.9E-14 6.4E-19 130.1 9.1 135 118-265 118-253 (279)
79 cd04663 Nudix_Hydrolase_6 Memb 99.5 7.2E-13 1.5E-17 108.9 12.5 106 152-263 3-116 (126)
80 PLN02552 isopentenyl-diphospha 99.5 1.1E-12 2.3E-17 119.5 14.2 134 145-280 53-224 (247)
81 cd03670 ADPRase_NUDT9 ADP-ribo 99.5 1.1E-12 2.3E-17 114.7 13.6 120 152-277 37-184 (186)
82 KOG3084 NADH pyrophosphatase I 99.5 1.2E-14 2.6E-19 133.1 1.1 112 146-262 184-297 (345)
83 KOG2839 Diadenosine and diphos 99.3 3.1E-12 6.6E-17 105.4 8.2 114 147-265 7-127 (145)
84 COG0494 MutT NTP pyrophosphohy 99.3 2.1E-11 4.5E-16 99.6 12.8 111 152-266 14-137 (161)
85 PLN02791 Nudix hydrolase homol 99.3 9.9E-12 2.2E-16 128.3 11.3 113 150-262 33-157 (770)
86 cd03431 DNA_Glycosylase_C DNA 99.3 8.2E-11 1.8E-15 94.2 11.8 102 154-266 7-108 (118)
87 KOG3041 Nucleoside diphosphate 99.2 4.3E-10 9.3E-15 97.0 11.6 101 161-262 88-193 (225)
88 KOG3069 Peroxisomal NUDIX hydr 99.0 1E-09 2.2E-14 97.4 8.2 113 151-263 45-163 (246)
89 PF14815 NUDIX_4: NUDIX domain 99.0 2.9E-09 6.4E-14 85.6 8.6 105 154-266 2-106 (114)
90 PLN02839 nudix hydrolase 98.8 1.4E-07 3E-12 89.8 16.6 169 76-262 148-326 (372)
91 COG1443 Idi Isopentenyldiphosp 98.8 7.4E-09 1.6E-13 88.0 6.9 116 150-266 34-156 (185)
92 COG4119 Predicted NTP pyrophos 98.7 8.6E-08 1.9E-12 77.3 7.9 127 150-281 4-153 (161)
93 KOG4195 Transient receptor pot 97.8 6.8E-05 1.5E-09 66.2 7.7 38 162-204 140-177 (275)
94 PRK10880 adenine DNA glycosyla 97.7 0.00026 5.7E-09 67.9 9.8 105 149-266 230-334 (350)
95 KOG0142 Isopentenyl pyrophosph 97.5 0.00014 3.1E-09 63.4 4.5 128 150-278 53-201 (225)
96 KOG2937 Decapping enzyme compl 97.5 2.1E-05 4.5E-10 73.3 -0.8 108 146-261 79-190 (348)
97 COG4112 Predicted phosphoester 97.4 0.0025 5.5E-08 53.9 11.0 107 153-262 65-186 (203)
98 KOG4432 Uncharacterized NUDIX 96.5 0.0045 9.8E-08 57.2 5.2 88 149-236 26-140 (405)
99 KOG4432 Uncharacterized NUDIX 96.2 0.019 4E-07 53.2 7.7 87 178-264 285-377 (405)
100 PRK13910 DNA glycosylase MutY; 96.0 0.032 6.9E-07 52.3 8.2 83 152-266 189-271 (289)
101 PF13869 NUDIX_2: Nucleotide h 95.5 0.28 6.1E-06 42.9 11.7 53 149-207 43-98 (188)
102 COG1194 MutY A/G-specific DNA 94.5 0.093 2E-06 50.0 6.3 104 141-266 227-330 (342)
103 KOG1689 mRNA cleavage factor I 93.5 0.17 3.8E-06 43.2 5.5 39 161-205 84-122 (221)
104 KOG4313 Thiamine pyrophosphoki 93.5 0.53 1.1E-05 42.8 8.8 114 146-260 130-255 (306)
105 KOG4548 Mitochondrial ribosoma 91.6 1 2.2E-05 41.1 8.1 100 160-265 138-249 (263)
106 TIGR01084 mutY A/G-specific ad 88.6 1.1 2.5E-05 41.7 6.2 32 152-184 230-261 (275)
107 PF03487 IL13: Interleukin-13; 53.0 13 0.00028 24.1 2.0 23 182-204 14-36 (43)
108 PF14443 DBC1: DBC1 47.5 76 0.0017 26.0 6.3 34 176-209 23-59 (126)
109 COG4111 Uncharacterized conser 44.3 68 0.0015 29.6 6.1 78 150-236 26-108 (322)
110 KOG2937 Decapping enzyme compl 40.7 7.2 0.00016 37.0 -0.7 65 140-208 229-295 (348)
111 PF12860 PAS_7: PAS fold 33.0 23 0.0005 27.4 1.2 43 151-198 5-47 (115)
112 PF06713 bPH_4: Bacterial PH d 29.0 87 0.0019 22.8 3.6 36 48-86 37-72 (74)
113 cd09232 Snurportin-1_C C-termi 28.6 24 0.00051 30.9 0.6 70 127-197 4-79 (186)
114 PF08918 PhoQ_Sensor: PhoQ Sen 20.9 26 0.00056 30.2 -0.6 41 129-169 51-92 (180)
115 KOG1794 N-Acetylglucosamine ki 20.6 1.8E+02 0.004 27.5 4.8 56 152-214 15-71 (336)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-45 Score=334.61 Aligned_cols=261 Identities=54% Similarity=0.915 Sum_probs=247.2
Q ss_pred cccceeccccCCCcEEEec-CCCCCHHHHHHHHHHHHHHHHHcCcceeeEEcchhhhcchhHHHhcCceeeecCCceEEE
Q 021099 53 VNKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLML 131 (317)
Q Consensus 53 ~~~~~~~~~d~~~gv~v~~-~~~~~~~~f~~~l~~sl~~w~~~~~~~vwl~l~~~~~~l~~~~~~~gf~~h~~~~~~~~l 131 (317)
....+.+..|+||||.|+. ..++|...|.+.|++|+.+|+.+|+++||+++|..++++++.+++.||.|||++.+|.||
T Consensus 18 ~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l 97 (295)
T KOG0648|consen 18 GSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVML 97 (295)
T ss_pred chhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceee
Confidence 4668899999999999999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcccee
Q 021099 132 VYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 211 (317)
Q Consensus 132 ~~wl~~~~~~~p~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~ 211 (317)
..|+++.+.++|.++.|+++++++|+|.+++||++++........|.|++|+|.|++||++.++|+||++||||++.++.
T Consensus 98 ~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~ 177 (295)
T KOG0648|consen 98 TSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV 177 (295)
T ss_pred eeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh
Confidence 99999999999999999999999999988999999998777777899999999999999999999999999999999999
Q ss_pred EEEEEEecccCCCc--eEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCccHHHHHHHHHHHHhccccCCCC
Q 021099 212 EVLAFRQSHQSFFE--KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAKVDTRGYH 289 (317)
Q Consensus 212 ~~l~~~~~~~~~~~--~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~~~l~~~~~~~~~ 289 (317)
+++.+++.|...+. +.++||+|.+.+.+.+++.+..|+..++|||++++..+++.+...+++.....|+.++.. .|.
T Consensus 178 eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~-~~~ 256 (295)
T KOG0648|consen 178 EVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEE-FYL 256 (295)
T ss_pred hHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhh-hcC
Confidence 99999999888766 899999999999999999999999999999999999999988788999999999999999 799
Q ss_pred CCCcCCCccccCCCceeeeeccccc
Q 021099 290 GFSPVPTTSAFSDKKHYFYLNSVDL 314 (317)
Q Consensus 290 g~~~~~~~~~~~~~~~~~y~~~~~~ 314 (317)
||+......+..++.+++|+|.++.
T Consensus 257 ~~~~~~l~~~~~~k~~~ly~~~~~~ 281 (295)
T KOG0648|consen 257 GLTAIVLTTTYTGKESYLYYNEDHA 281 (295)
T ss_pred CccceeccccccCcccccccccchh
Confidence 9997777778889999999998863
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=3.8e-22 Score=163.59 Aligned_cols=125 Identities=58% Similarity=0.951 Sum_probs=98.8
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceE
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 227 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~ 227 (317)
|.++|+++|+|++++|||++++.. .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS 77 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence 578999999998899999988764 35899999999999999999999999999999998888777655544445566
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCccHHHHHHHHH
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVD 277 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~ 277 (317)
.++|+|.+.........+++|+.+++|++++++.+.++.+ .+-+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~--~~~~~~~~ 125 (127)
T cd04670 78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITS--EVNRLILD 125 (127)
T ss_pred eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHH--HHHHHHHh
Confidence 6777877654444445567888999999999998887753 34444443
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.2e-20 Score=154.31 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=88.9
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC--CCc
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFE 225 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~--~~~ 225 (317)
++++|+++|++.+++|||++|.+.+ ..+.|.+|||++|+||++.+||+||++||||+.+....+++....... ..+
T Consensus 1 ~~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04679 1 PRVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQH 78 (125)
T ss_pred CceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCe
Confidence 3678999999988999999998654 358999999999999999999999999999999988888776554322 234
Q ss_pred eEEEEEEEEEccCCccccCCccceeeEEEEeccccccC
Q 021099 226 KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 226 ~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
...++|++...... ....+++|+.+++|++++++.+.
T Consensus 79 ~~~~~f~~~~~~~~-~~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 79 WVAPVYLAENFSGE-PRLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred EEEEEEEEeecCCc-cccCCCccccEEEEeCHHHCCch
Confidence 45667777654322 22235578999999999999763
No 4
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.83 E-value=9.5e-20 Score=153.58 Aligned_cols=126 Identities=29% Similarity=0.463 Sum_probs=95.6
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEe-----ccc-
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ-----SHQ- 221 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~-----~~~- 221 (317)
++.+|+++|+|.+++|||++|.+.+ +.|.+|||++|+||++.+||+||++||||+++....+++... ...
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~ 77 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPP 77 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChh
Confidence 4578999999988999999998753 799999999999999999999999999999987777765421 110
Q ss_pred ----C-----CCceEEEEEEEEEccCCccccCC---ccceeeEEEEeccccccCCCCccHHHHHHHHH
Q 021099 222 ----S-----FFEKSDIFFLCMLRPLSFDIQKQ---ESEIEAAEWMPLEEYAAQPYVQNQELLKYIVD 277 (317)
Q Consensus 222 ----~-----~~~~~~~~f~~~l~~~~~~~~~~---~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~ 277 (317)
. ..+...++|++.+......+..+ ++|+.+++|++++++.++..+....++.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 145 (147)
T cd03671 78 ELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVLK 145 (147)
T ss_pred hhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHHH
Confidence 0 11345677777765433333332 57999999999999999887765666655443
No 5
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.83 E-value=1.4e-19 Score=154.35 Aligned_cols=129 Identities=23% Similarity=0.314 Sum_probs=98.7
Q ss_pred cceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEec-------
Q 021099 147 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS------- 219 (317)
Q Consensus 147 ~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~------- 219 (317)
.++++|+++|+|.+|+|||+|+... ++.|++|||++++||++.+||.||++||||+.+....+++....
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~ 81 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP 81 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence 3567899999999999999999752 47899999999999999999999999999999887777765321
Q ss_pred -------ccCCCceEEEEEEEEEccCCccccC---CccceeeEEEEeccccccCCCCccHHHHHHHHHHH
Q 021099 220 -------HQSFFEKSDIFFLCMLRPLSFDIQK---QESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDIC 279 (317)
Q Consensus 220 -------~~~~~~~~~~~f~~~l~~~~~~~~~---~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~~~ 279 (317)
.....+...++|++........+.. +++|+.+++|++++++.++..+..+.+++.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~ 151 (156)
T PRK00714 82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEF 151 (156)
T ss_pred HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHH
Confidence 1112334567888877544333333 34799999999999999977665577777666553
No 6
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.83 E-value=1.3e-19 Score=152.43 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=88.8
Q ss_pred cceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcccee--EEEEEEecccC--
Q 021099 147 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV--EVLAFRQSHQS-- 222 (317)
Q Consensus 147 ~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~--~~l~~~~~~~~-- 222 (317)
++.++|+++|+|.+|+|||+||...+ .+|.|.+|||++|.||++.+||+||++||||+++... .+++.......
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~p--~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~ 87 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNRP--AQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN 87 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCCC--CCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence 45689999999988999999998754 3689999999999999999999999999999998766 66655432111
Q ss_pred ------CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 223 ------FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 223 ------~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
..+....+|.|.... .....++.|+.+++|++++++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~el~~~~~ 134 (144)
T cd03430 88 FFGDDFSTHYVVLGYVLKLSS--NELLLPDEQHSEYQWLTSDELLADDD 134 (144)
T ss_pred cccCCCccEEEEEEEEEEEcC--CcccCCchhccEeEEecHHHHhcCCC
Confidence 123345566665533 23345678999999999999987643
No 7
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.6e-19 Score=148.32 Aligned_cols=115 Identities=31% Similarity=0.445 Sum_probs=90.5
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc--CCCc
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ--SFFE 225 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~--~~~~ 225 (317)
++++|+++|+|+++++||++|...+ ..+.|.+|||++++||++.+||+||++||||+++.....++...... ....
T Consensus 1 p~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 78 (129)
T cd04678 1 PRVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKH 78 (129)
T ss_pred CceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcE
Confidence 3678999999988999999998653 46899999999999999999999999999999998877776544322 2244
Q ss_pred eEEEEEEEEEccCCccccC-CccceeeEEEEeccccccCC
Q 021099 226 KSDIFFLCMLRPLSFDIQK-QESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 226 ~~~~~f~~~l~~~~~~~~~-~~~E~~~~~Wv~~~el~~~~ 264 (317)
...++|.|........... +.+|+.+++|++++++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 79 YVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred EEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 5677888876543322222 56788899999999999874
No 8
>PLN02325 nudix hydrolase
Probab=99.82 E-value=1.4e-19 Score=152.28 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=90.0
Q ss_pred CCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc--
Q 021099 144 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ-- 221 (317)
Q Consensus 144 ~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~-- 221 (317)
.+++++++|+++|++ +++|||+||...+ +.|.|.+|||++|.||++.+||+||++||||+++....+++......
T Consensus 4 ~~~~p~~~v~~vi~~-~~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 4 GEPIPRVAVVVFLLK-GNSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCeEEEEEEEEc-CCEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 346678899998887 4799999998654 45899999999999999999999999999999999888887654322
Q ss_pred --CCCceEEEEEEEEEccCCc-cccCCccceeeEEEEeccccccCCC
Q 021099 222 --SFFEKSDIFFLCMLRPLSF-DIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 222 --~~~~~~~~~f~~~l~~~~~-~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
...+...++|.|....... ....+++|..+++|+++++++...+
T Consensus 81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~ 127 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLF 127 (144)
T ss_pred CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhh
Confidence 1234456677776543322 2223456678899999999987443
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.82 E-value=8.6e-20 Score=153.77 Aligned_cols=120 Identities=27% Similarity=0.352 Sum_probs=87.0
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcc--ceeEEEEEEe-------
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT--EFVEVLAFRQ------- 218 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~--~~~~~l~~~~------- 218 (317)
++++|++++++.+++|||++|... ++.|++|||++|+|||+.+||+||++||||+++ ....++....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 567999999998899999988652 478999999999999999999999999999998 4333332110
Q ss_pred c------ccCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHH
Q 021099 219 S------HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKY 274 (317)
Q Consensus 219 ~------~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~ 274 (317)
. .....+...++|+|..... .....+|+.+++|++++++.++... ....++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~ 141 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALPHE---RPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQ 141 (148)
T ss_pred hhhhhccccccCCceeEEEEEecCCC---CccccCcccceeeCCHHHHHHHhcChhHHHHHHH
Confidence 0 1112345667888864321 1233459999999999999998764 33444443
No 10
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.5e-19 Score=146.09 Aligned_cols=108 Identities=26% Similarity=0.333 Sum_probs=86.5
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccc-eeEEEEEEecccCCCceEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-FVEVLAFRQSHQSFFEKSDI 229 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~-~~~~l~~~~~~~~~~~~~~~ 229 (317)
+|.++|+|.++++||+++... +.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence 678889998899999998742 489999999999999999999999999999998 77777776655444445566
Q ss_pred EEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 230 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 230 ~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
+|.|.... .....+++|+.+++|++++++.+...
T Consensus 77 ~f~~~~~~--~~~~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 77 VFRARADT--QPVIRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred EEEecccC--CCccCCcccEEEEEEECHHHCcccCC
Confidence 77775432 22245678999999999999988544
No 11
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.82 E-value=2.6e-19 Score=153.09 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=85.5
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccce--eEEEEEEecccC---
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQS--- 222 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~--~~~l~~~~~~~~--- 222 (317)
+.++|+++|.+++++|||+||...+ ..|.|+||||++|+||++.+||+||++||||+++.. ..+++.......
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~ 93 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 93 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccccc
Confidence 3568999999888999999998654 469999999999999999999999999999999743 244544322211
Q ss_pred -----CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 223 -----FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 223 -----~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
..+...++|.|... .++...++.|+.+++|++++++.++..
T Consensus 94 ~~~~~~~~~i~~~f~~~~~--~g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 94 SGTDFTTHYVVLGFRLRVA--EEDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred CCCccceEEEEEEEEEEec--CCcccCChHHeeEEEEEeHHHhhhccc
Confidence 11234556666543 345556677999999999999988643
No 12
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.82 E-value=2.5e-19 Score=146.09 Aligned_cols=113 Identities=25% Similarity=0.348 Sum_probs=87.1
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC------CC
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS------FF 224 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~------~~ 224 (317)
+++++|+++ ++|||+++.+.+ .++.|.+|||++|+||++.+||+||++||||+.+.....++....... ..
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 678888885 899999998765 469999999999999999999999999999999888777765433211 12
Q ss_pred ceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 225 EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 225 ~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
+...++|.|.............+|..+++|++++++.+....
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 120 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLS 120 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCC
Confidence 456677888664332211345678899999999999976654
No 13
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.81 E-value=1.5e-19 Score=149.91 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=90.8
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceE
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 227 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~ 227 (317)
|+.+|+++++++++++||+++.+.+. .++.|++|||++|.||++.+||+||++||||+.+.....++............
T Consensus 1 ~~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd03424 1 HPDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDER 79 (137)
T ss_pred CCCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCcc
Confidence 34689999999999999998876654 45799999999999999999999999999999997666665544433333345
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
..+|+|...........++.|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 80 IHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred EEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence 566777654433224566788999999999999876544
No 14
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.81 E-value=2e-19 Score=147.14 Aligned_cols=119 Identities=29% Similarity=0.451 Sum_probs=95.1
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCC---c
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF---E 225 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~---~ 225 (317)
+.+|+++|++.+++|||+++.+.+...++.|.+|||++++||++.+||+||+.||||+.+.....+.......... +
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 5789999999888999999998764456999999999999999999999999999999997666665444433322 3
Q ss_pred eEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCc
Q 021099 226 KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQ 267 (317)
Q Consensus 226 ~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 267 (317)
...++|.+.+.........+..|+.+++|++++++.++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 567777776655544455555699999999999999877653
No 15
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6.2e-19 Score=143.80 Aligned_cols=110 Identities=21% Similarity=0.400 Sum_probs=83.6
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
.++++|++++++|||++|... +.+.|+||||++|+||++.+||+||++||||+++....+++.... .+...++
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~ 74 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHY 74 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEE
Confidence 367788887799999998754 348999999999999999999999999999999977777766544 2345678
Q ss_pred EEEEEccCCccc------c-CCccceeeEEEEeccccccCCCCc
Q 021099 231 FLCMLRPLSFDI------Q-KQESEIEAAEWMPLEEYAAQPYVQ 267 (317)
Q Consensus 231 f~~~l~~~~~~~------~-~~~~E~~~~~Wv~~~el~~~~~~~ 267 (317)
|.|......... . .++.+..+++|++++++..+++.+
T Consensus 75 f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred EEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 888654322111 0 123456789999999999987754
No 16
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.81 E-value=6.2e-19 Score=147.93 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=88.1
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC-Cce
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF-FEK 226 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~-~~~ 226 (317)
...+|+++|++.+++|||++++..+ .++.|++|||++++||++.+||+||++||||+++.....++........ ...
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 89 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLV 89 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEE
Confidence 3568999999988899999987654 4689999999999999999999999999999999888777654432221 223
Q ss_pred EEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 227 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 227 ~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
..++|++........+ ...+|+.+++|++++++.++...
T Consensus 90 ~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 90 LRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred EEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence 3467777654322222 23479999999999999987543
No 17
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.81 E-value=3.4e-19 Score=145.94 Aligned_cols=109 Identities=28% Similarity=0.441 Sum_probs=84.4
Q ss_pred eEEEEEEEeCC---ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC----
Q 021099 150 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS---- 222 (317)
Q Consensus 150 v~v~~iv~~~~---g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~---- 222 (317)
.+++++|++.+ ++|||+++++. +.|.+|||++++||++.+||.||++||||+.+.....++.......
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK 76 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence 46888888865 89999999752 7899999999999999999999999999999988777765443322
Q ss_pred CCceEEEEEEEEEccCCccccC-CccceeeEEEEeccccccCCC
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQK-QESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~~-~~~E~~~~~Wv~~~el~~~~~ 265 (317)
......++|.+..... .... ++.|+.+++|++++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 77 RVHKTVHWWLMRALGG--EFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred CcceEEEEEEEEEcCC--CcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 2445566777765432 2222 568899999999999987554
No 18
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.2e-19 Score=145.85 Aligned_cols=107 Identities=27% Similarity=0.534 Sum_probs=82.6
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC----Cce
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF----FEK 226 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~----~~~ 226 (317)
+|+++|++++++|||++|...+ .++.|.+|||+++.||++.+||.||++||||+++.....++........ ...
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREP--GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT 80 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCC--CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence 6788888988999999998765 3589999999999999999999999999999999877777554322111 123
Q ss_pred EEEEEEEEEccCCccccCCccceeeEEEEeccccc
Q 021099 227 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 261 (317)
Q Consensus 227 ~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~ 261 (317)
..++|+|.+... ....+.+|+.+++|++++++.
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 81 LDLFFVCQVDDK--PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEEeCCC--CCcCChHHhheeEEecHHHCC
Confidence 345677765422 233456799999999999985
No 19
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5.9e-19 Score=142.86 Aligned_cols=112 Identities=34% Similarity=0.532 Sum_probs=84.8
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC------C
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS------F 223 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~------~ 223 (317)
++|+++|+++ +++||++|.+.+ .++.|.+|||++++||++.+||+||++||||+++.....++....... .
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence 4678888874 799999998654 358999999999999999999999999999999877777765443321 1
Q ss_pred CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCc
Q 021099 224 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQ 267 (317)
Q Consensus 224 ~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 267 (317)
.....+.|.|... .... ..++|+.+++|++++++.++++.+
T Consensus 78 ~~~~~~~~~~~~~--~~~~-~~~~E~~~~~w~~~~el~~~~~~~ 118 (122)
T cd04673 78 FHYVLIDFLCRYL--GGEP-VAGDDALDARWVPLDELAALSLTE 118 (122)
T ss_pred eEEEEEEEEEEeC--CCcc-cCCcccceeEEECHHHHhhCcCCc
Confidence 2234455666543 2233 345788999999999999988763
No 20
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=4.1e-19 Score=144.74 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=81.7
Q ss_pred EEEEEEeCCceEEEEEecCC-CCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 152 VGAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~-~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
|+++++.++|+|||++|... ....+|.|.+|||+++.||++.+||+||++||||++++...+...............++
T Consensus 3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV 82 (122)
T ss_pred eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence 33344444599999999875 23357999999999999999999999999999999986444332222222233456677
Q ss_pred EEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
|++...... ....+++|+.+++|++++++.+...
T Consensus 83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred EEEEEecCC-CccccCchhheeecccHHHHhhccc
Confidence 777654332 3446778999999999999977643
No 21
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6.3e-19 Score=144.93 Aligned_cols=112 Identities=24% Similarity=0.388 Sum_probs=83.4
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecc-------
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH------- 220 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~------- 220 (317)
+.+++++++++.+++|||++|.. .+.|.+|||++++||++.+||+||++||||+++.....++.....
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPN 80 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCC
Confidence 45688888999889999999874 278999999999999999999999999999999887777543211
Q ss_pred cCC-CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 221 QSF-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 221 ~~~-~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
... .....++|++.. ....+..+.+|+.+++|++++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 81 GDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred CCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence 111 112234444432 22333456789999999999999887654
No 22
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.80 E-value=9.8e-19 Score=146.15 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=75.9
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEe------cc--cCC
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ------SH--QSF 223 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~------~~--~~~ 223 (317)
+.+.+++.+++|||+||.......+|.|++|||++|+||++.+||+||++||||+++....+..... .. ...
T Consensus 6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T PRK15472 6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR 85 (141)
T ss_pred EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence 4444444578999999876543356999999999999999999999999999999875444321100 00 111
Q ss_pred CceEEEEE-EEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 FEKSDIFF-LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 ~~~~~~~f-~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.....++| ++........+. .++|+.+++|++++|+.++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~w~~~~el~~l~~~ 128 (141)
T PRK15472 86 KEEIYMIYLIFDCVSANRDVK-INEEFQDYAWVKPEDLVHYDLN 128 (141)
T ss_pred ceeEEEEEEEEEeecCCCccc-CChhhheEEEccHHHhcccccc
Confidence 11122222 222222233333 3478999999999999999876
No 23
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.5e-19 Score=143.38 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=82.8
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc--CC---
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ--SF--- 223 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~--~~--- 223 (317)
.++|+++|+|.+++|||+|+.. ..|.|.+|||++++|||+.+||+||++||||+++.....+....... ..
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKP 77 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCc
Confidence 3578899999889999998764 24899999999999999999999999999999988777664432211 11
Q ss_pred CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 ~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+...+.|.+... ...+ ..++|+.+++|++++++.++++.
T Consensus 78 ~~~~~~~~~~~~~--~~~~-~~~~e~~~~~W~~~~el~~~~~~ 117 (125)
T cd04696 78 AHFVLFDFFARTD--GTEV-TPNEEIVEWEWVTPEEALDYPLN 117 (125)
T ss_pred cEEEEEEEEEEec--CCcc-cCCcccceeEEECHHHHhcCCCC
Confidence 1222344555443 2233 23468999999999999999875
No 24
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.79 E-value=1.9e-18 Score=142.79 Aligned_cols=128 Identities=28% Similarity=0.267 Sum_probs=91.4
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC--CceE
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKS 227 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~--~~~~ 227 (317)
++|++++.+ ++++||++|.+. +.+.|.+|||++++||++.+||.||++||||+++....+++........ ....
T Consensus 1 ~~v~~ii~~-~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T cd03675 1 VTVAAVVER-DGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYL 76 (134)
T ss_pred CeEEEEEEE-CCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEE
Confidence 356666665 689999999765 3589999999999999999999999999999999877777654433221 2233
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCccHHHHHHHHHHHHhc
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSAK 282 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~~~l~~ 282 (317)
.++|++.+..... ....++|+.++.|++++++.++......+.+..+++.++..
T Consensus 77 ~~~f~~~~~~~~~-~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 77 RFAFAAELLEHLP-DQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEEEEEEECCCCC-CCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 4567776543221 12345689999999999999887432244456666665553
No 25
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.79 E-value=1.4e-18 Score=144.84 Aligned_cols=110 Identities=30% Similarity=0.461 Sum_probs=80.1
Q ss_pred eEEEEEEEeCC-ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEE------Eec--c
Q 021099 150 VGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF------RQS--H 220 (317)
Q Consensus 150 v~v~~iv~~~~-g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~------~~~--~ 220 (317)
.+++++|+|++ ++|||++|.. .+.|.+|||++|+||++.+||+||++||||+++......++ ... .
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 46888899977 9999999874 37899999999999999999999999999998766554321 110 0
Q ss_pred cC----CCceEEEEEEEEEccCCcccc-CCccceeeEEEEeccccccCCCC
Q 021099 221 QS----FFEKSDIFFLCMLRPLSFDIQ-KQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 221 ~~----~~~~~~~~f~~~l~~~~~~~~-~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.. .......+|+|..... ... .+++|+.+++|++++++..+++.
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~ 126 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAPAD--DVAPPKSDESDAVRWFPLDELASLELP 126 (138)
T ss_pred CCCCCCCcEEEEEEEEEEccCc--cccCCCCCcccccEEEcHHHhhhccCC
Confidence 00 0112345677764322 222 36689999999999999877665
No 26
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.9e-18 Score=139.93 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=81.8
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccc--eeEEEEEEecccCC-CceE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE--FVEVLAFRQSHQSF-FEKS 227 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~--~~~~l~~~~~~~~~-~~~~ 227 (317)
+|.++|.+ +++|||+||.+.+. .+|.|.+|||++++||++.+||+||++||||+.+. ....++........ ....
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI 79 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence 57777776 58999999987654 36999999999999999999999999999999986 44455544433322 3455
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
.++|.|..... .....+++|+.+++|++++++.....
T Consensus 80 ~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 80 GLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcchhc
Confidence 66677754322 12223457889999999999987543
No 27
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2e-18 Score=141.72 Aligned_cols=114 Identities=25% Similarity=0.446 Sum_probs=83.7
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecc--------
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH-------- 220 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~-------- 220 (317)
+.+|+++|++ +++|||+++... +.+.|.+|||++|+||++.+||+||++||||+.+....++......
T Consensus 1 r~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~ 76 (128)
T cd04687 1 RNSAKAVIIK-NDKILLIKHHDD---GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSEL 76 (128)
T ss_pred CcEEEEEEEE-CCEEEEEEEEcC---CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccC
Confidence 3578888887 579999998653 2478999999999999999999999999999998776665443322
Q ss_pred cCCCceEEEEEEEEEccCCc-cc-cCCccceeeEEEEeccccccCCCC
Q 021099 221 QSFFEKSDIFFLCMLRPLSF-DI-QKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 221 ~~~~~~~~~~f~~~l~~~~~-~~-~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
....+...++|+|....... .. ...+.|..+++|++++++.++++.
T Consensus 77 ~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~ 124 (128)
T cd04687 77 PGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLY 124 (128)
T ss_pred CCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCccccc
Confidence 11245566788887643321 11 123345678999999999988765
No 28
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.79 E-value=2.2e-18 Score=142.84 Aligned_cols=119 Identities=24% Similarity=0.355 Sum_probs=86.4
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC--CceEEE
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKSDI 229 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~--~~~~~~ 229 (317)
+.++|.+ +++|||++|...+ ..+.|.+|||++|+||++.+||+||++||||+.+.....++........ .....+
T Consensus 4 ~~~~i~~-~~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 4 TLCFIKD-PDKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEE-CCEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 4455565 4899999998765 4689999999999999999999999999999999888888766544332 334455
Q ss_pred EEEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHHHH
Q 021099 230 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYIV 276 (317)
Q Consensus 230 ~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~~~ 276 (317)
+|.|... ..... +..|..+++|++++++.++++. ....+++.++
T Consensus 81 ~f~~~~~--~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 81 VFLATEF--EGEPL-KESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred EEEECCc--ccccC-CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 5555432 22222 3456678999999999987766 3344444443
No 29
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2e-18 Score=139.94 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=80.7
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEE
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 231 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 231 (317)
|+++|+++ ++|||+||...+...+|.|++|||++|+||++.+||+||++||||+++.....+........ .....++|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 45566664 89999999876543579999999999999999999999999999999765666655444332 33455667
Q ss_pred EEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 232 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 232 ~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
.+.... .. ...+|+.+++|+++++++.++.
T Consensus 81 ~~~~~~--~~--~~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 81 VVTFWQ--GE--IPAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred EEEEec--CC--CCcccccccEEcCHHHcchhhh
Confidence 765432 22 2347899999999999987643
No 30
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.79 E-value=4.8e-18 Score=140.44 Aligned_cols=123 Identities=24% Similarity=0.276 Sum_probs=88.3
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
.+.++|++++++|||+||.....+ .|.|+||||++|+||++.+|++||++||||+.+.....++...+..+......++
T Consensus 5 ~~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (135)
T PRK10546 5 DVVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHA 83 (135)
T ss_pred EEEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEE
Confidence 344445566789999999776543 5999999999999999999999999999999987776665554444434444455
Q ss_pred EEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHHHHHH
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYIVDI 278 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~~~~~ 278 (317)
|.+... ... ....|..+++|++++++.+++++ ....+++.+.+.
T Consensus 84 ~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~ 128 (135)
T PRK10546 84 WHVPDF--HGE--LQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL 128 (135)
T ss_pred EEEEEe--cCc--ccccccceeEEcCHHHcccCCCCcCcHHHHHHHHHh
Confidence 555432 112 22356778999999999998877 456666555443
No 31
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.3e-18 Score=139.61 Aligned_cols=109 Identities=26% Similarity=0.476 Sum_probs=85.2
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC-----C
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS-----F 223 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~-----~ 223 (317)
+++|+++|+++ ++|||+++++ .+.|.+|||++++||++.+||+||++||||+.+....++++...... .
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP 75 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence 57899999985 8999999875 48899999999999999999999999999999977777766543221 1
Q ss_pred CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 ~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+...++|+|..... .+... +|+.+++|++++++.++.+.
T Consensus 76 ~~~~~~~f~~~~~~~--~~~~~-~E~~~~~W~~~~el~~l~~~ 115 (123)
T cd04672 76 YQVYKLFFLCEILGG--EFKPN-IETSEVGFFALDDLPPLSEK 115 (123)
T ss_pred eEEEEEEEEEEecCC--cccCC-CceeeeEEECHHHCcccccC
Confidence 234456777766432 23233 78999999999999998765
No 32
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.7e-18 Score=139.89 Aligned_cols=109 Identities=29% Similarity=0.419 Sum_probs=83.3
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
.+++++++.+++|||++|.+.+ .++.|.+|||++|.||++.+||+||++||||+++.....+...... .+...++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~ 76 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRS--CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFV 76 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCC--CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEE
Confidence 4677888888999999998655 3589999999999999999999999999999999888877654432 2345667
Q ss_pred EEEEEccCCccc-cCCccceeeEEEEeccccccCCC
Q 021099 231 FLCMLRPLSFDI-QKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 231 f~~~l~~~~~~~-~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
|.|......... ..++.|+.+++|++++++ .+++
T Consensus 77 f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el-~~~~ 111 (123)
T cd04671 77 FTGNITGGDLKTEKEADSESLQARWYSNKDL-PLPL 111 (123)
T ss_pred EEEEEeCCeEccCCCCCcceEEEEEECHHHC-CCcc
Confidence 777654332221 123467889999999999 3443
No 33
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.3e-18 Score=142.80 Aligned_cols=112 Identities=24% Similarity=0.301 Sum_probs=87.0
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 229 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 229 (317)
++.++++|.+++|||++|...+...+|.|++ |||++++||++.+||+||++||||+.+.....++.+............
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 5778899999999999988766556799999 699999999999999999999999999866666554443332334445
Q ss_pred EEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 230 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 230 ~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
+|.+... .....+++|+.+++|++++++.++..
T Consensus 82 ~f~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 82 VFSCVYD---GPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEEEEC---CCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 6666542 23446678999999999999987543
No 34
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.78 E-value=7.3e-18 Score=137.48 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=87.3
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
.++++|.+++++|||+||...+.+ +|.|+||||++++||++.+||.||++||||+++.....++...+..........+
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWF 84 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEE
Confidence 445566777789999999877654 5999999999999999999999999999999876666665544444444444555
Q ss_pred EEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHHH
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYI 275 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~~ 275 (317)
|.+.... .. ....|..+++|++++++...+++ ...++++.+
T Consensus 85 ~~~~~~~--~~--~~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 85 WLVESWE--GE--PWGKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEEEC--Cc--cCCccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 5554321 11 22356778899999999998887 445555544
No 35
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.9e-18 Score=138.75 Aligned_cols=111 Identities=26% Similarity=0.422 Sum_probs=83.7
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecc---c----
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH---Q---- 221 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~---~---- 221 (317)
+.+|+++|+|+++++||++|.. .+.|.+|||++++||++.+||+||++||||+++....+++..... .
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPN 76 (129)
T ss_pred cceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCC
Confidence 4578888999889999999975 288999999999999999999999999999998777665432211 0
Q ss_pred CC-CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 222 SF-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 222 ~~-~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.. .....++|++.... .....+..|..+++|++++++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~w~~~~el~~~~~~ 120 (129)
T cd04676 77 GDVRQYLDITFRCRVVG--GELRVGDDESLDVAWFDPDGLPPLLMH 120 (129)
T ss_pred CCcEEEEEEEEEEEeeC--CeecCCCCceeEEEEEChhhCccccCC
Confidence 10 13345566665432 222245678889999999999998876
No 36
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.78 E-value=1e-18 Score=147.30 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=76.8
Q ss_pred EEEEEEEeCC-ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEE
Q 021099 151 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 229 (317)
Q Consensus 151 ~v~~iv~~~~-g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 229 (317)
.++++|++++ ++|||+|+.. .+.|+||||++|+||++.+||+||++||||+.+......... ......+....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~-~~~~~~~~~~~ 76 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDY-IELIIRGQNVK 76 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecccccee-eecccCCcEEE
Confidence 5788888865 7999999864 258999999999999999999999999999988653211111 11112233445
Q ss_pred EEEEEEccCCccccC-CccceeeEEEEeccccccCCCC
Q 021099 230 FFLCMLRPLSFDIQK-QESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 230 ~f~~~l~~~~~~~~~-~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
+|++........... +++|+.+++|++++++.++...
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 666543222222222 3578999999999999886543
No 37
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.78 E-value=2e-18 Score=147.28 Aligned_cols=113 Identities=23% Similarity=0.233 Sum_probs=87.1
Q ss_pred EEEEEEEeCC--ceEEEEEecCCCCCCCCcEEcceeecCCC-CCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceE
Q 021099 151 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 227 (317)
Q Consensus 151 ~v~~iv~~~~--g~VLLv~r~~~~~~~~g~W~~PgG~ve~G-Es~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~ 227 (317)
+|.+++.+.+ ++|||+||.......+|.|++|||++|+| |++.+||+||++||||+++.....++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4555566644 69999999876543479999999999999 99999999999999999998888877655433333455
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 264 (317)
..+|++..... ..+..+++|+.+++|++++++.+..
T Consensus 84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcC
Confidence 56677765432 3455677899999999999998864
No 38
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.77 E-value=3.1e-18 Score=141.69 Aligned_cols=122 Identities=21% Similarity=0.323 Sum_probs=89.9
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
+|.+++.+++++|||++|+..+ .|.|.+|||+++.||++.+||+||++||||+++.....++...... .....++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~~~ 76 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF--PSSLMLG 76 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC--CceEEEE
Confidence 4556677777999999998643 5899999999999999999999999999999998777776533222 2345667
Q ss_pred EEEEEccCCccccCCccceeeEEEEeccccccC----CCC-ccHHHHHHHHHHH
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ----PYV-QNQELLKYIVDIC 279 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~----~~~-~~~~ii~~~~~~~ 279 (317)
|+|.... .....+++|+.+++|++++++.++ +.. ....+...++...
T Consensus 77 f~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 128 (131)
T cd03429 77 FTAEADS--GEIVVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW 128 (131)
T ss_pred EEEEEcC--CcccCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHHH
Confidence 7776543 345566789999999999998874 221 3345555555443
No 39
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.2e-18 Score=139.78 Aligned_cols=114 Identities=27% Similarity=0.388 Sum_probs=83.1
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC--CceE
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF--FEKS 227 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~--~~~~ 227 (317)
++++++|.+++++|||+||...+.+.+|.|++|||++++||++.+||+||++||||+.+.....++....+... ....
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 46778888877999999998776445799999999999999999999999999999998776664332233222 2233
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.++|.|... .. ...++.|..+++|++++++..+.++
T Consensus 82 ~~~~~~~~~--~~-~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 82 YLVFVCEAL--SG-AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEeeec--CC-cccCChhheEEEEecHHHhhhhhcc
Confidence 344554332 11 2234568889999999998766554
No 40
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.77 E-value=8.8e-18 Score=141.60 Aligned_cols=118 Identities=26% Similarity=0.439 Sum_probs=88.5
Q ss_pred CCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC-
Q 021099 145 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF- 223 (317)
Q Consensus 145 ~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~- 223 (317)
+..+.++|++++... ++|||+||...| ..|.|.+|||++|.||++++||.||++||||++++..+++++++.....
T Consensus 6 ~~~p~~~v~~~i~~~-~~iLLvrR~~~p--~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~ 82 (145)
T COG1051 6 YRTPLVAVGALIVRN-GRILLVRRANEP--GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDP 82 (145)
T ss_pred CCCcceeeeEEEEeC-CEEEEEEecCCC--CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCC
Confidence 355677888888874 499999999988 4589999999999999999999999999999999999999888876543
Q ss_pred -CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 -FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 -~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.....++|++... .......+.++...+.|++++++..++.+
T Consensus 83 r~~~v~~~~~~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 83 RGHHVSFLFFAAEP-EGELLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred ceeEEEEEEEEEec-CCCcccCChhhHhhcceecHhHccccccc
Confidence 2222333333222 12122233357788999999999985443
No 41
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=2.1e-17 Score=134.94 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=89.5
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEE
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSD 228 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 228 (317)
...++++|+++++++||++|...+.+ .|.|+||||.+++||++.+|++||+.||||+.+.....++...+..+......
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~~~-~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~ 82 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGHMF-AKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLW 82 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCCCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEE
Confidence 34455566677789999999877664 59999999999999999999999999999999877766665555555555556
Q ss_pred EEEEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHH
Q 021099 229 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLK 273 (317)
Q Consensus 229 ~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~ 273 (317)
.+|.|..... . ....+..+++|++++++.+++++ ...++++
T Consensus 83 ~~~~~~~~~~--~--~~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~ 124 (128)
T TIGR00586 83 FWLLERWEGG--P--PGKEGQPEEWWVLVGLLADDFFPAANPVIIK 124 (128)
T ss_pred EEEEEEEcCC--C--cCcccccccEEeCHHHCCccCCCCCCHHHHH
Confidence 6666654321 1 12345667899999999999888 4455544
No 42
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.1e-17 Score=136.88 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=83.7
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecc----cCCCce
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH----QSFFEK 226 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~----~~~~~~ 226 (317)
.|.++|+++ ++|||+++.. .+.|.+|||++|+||++.+||+||++||||+.+.....++..... ....+.
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence 466677764 5999998874 478999999999999999999999999999999888877654321 112345
Q ss_pred EEEEEEEEEccCCccc-----cCCccceeeEEEEeccccccCCCCc
Q 021099 227 SDIFFLCMLRPLSFDI-----QKQESEIEAAEWMPLEEYAAQPYVQ 267 (317)
Q Consensus 227 ~~~~f~~~l~~~~~~~-----~~~~~E~~~~~Wv~~~el~~~~~~~ 267 (317)
..++|.|.+....... ..++.|+.+++|++++++..+++.+
T Consensus 77 ~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 77 IEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred EEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 5778888764332211 1245789999999999999877653
No 43
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.76 E-value=1.1e-17 Score=137.94 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=86.2
Q ss_pred CCCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC
Q 021099 143 PANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS 222 (317)
Q Consensus 143 p~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~ 222 (317)
..+.++.+.|+++|+++ ++|||++|...+ ..|.|.+|||++|.||++.+||+||++||||+++....+++.....
T Consensus 7 ~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-- 81 (130)
T cd04511 7 IHYQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP-- 81 (130)
T ss_pred ccCCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC--
Confidence 33456677888887774 899999997654 4589999999999999999999999999999998777666665443
Q ss_pred CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccc
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 261 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~ 261 (317)
......++|+|..... .+ ....|..+++|++++++.
T Consensus 82 ~~~~~~~~f~~~~~~~--~~-~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 82 HISQVYMFYRARLLDL--DF-APGPESLEVRLFTEEEIP 117 (130)
T ss_pred CceEEEEEEEEEEcCC--cc-cCCcchhceEEECHHHCC
Confidence 2345677888876432 22 234678889999999996
No 44
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.76 E-value=1.2e-17 Score=136.38 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=80.2
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc----CCCc
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ----SFFE 225 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~----~~~~ 225 (317)
+.|+++|++ +++|||+++.. .+.|.+|||++|+||++.+||+||++||||+++.....++...... ...+
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence 467777775 67999999863 3689999999999999999999999999999998887776544322 1123
Q ss_pred eEEEEEEEEEccCCcc-ccCCccceeeEEEEeccccccCC
Q 021099 226 KSDIFFLCMLRPLSFD-IQKQESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 226 ~~~~~f~~~l~~~~~~-~~~~~~E~~~~~Wv~~~el~~~~ 264 (317)
...++|.|........ ....++|+.+++|++++++...|
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~p 115 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLYP 115 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHcccCc
Confidence 4456777765432211 22345678999999999976543
No 45
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.76 E-value=1.7e-17 Score=152.21 Aligned_cols=132 Identities=19% Similarity=0.202 Sum_probs=100.1
Q ss_pred CCCCCCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEec
Q 021099 140 NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS 219 (317)
Q Consensus 140 ~~~p~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~ 219 (317)
+....++.+..+|.++|.+ ++++||+++++.+ .|.|.+|||++|+||++++||+||++||||+++....+++....
T Consensus 123 c~~~~yp~~~paViv~V~~-~~~iLL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~ 198 (256)
T PRK00241 123 CRERYYPRIAPCIIVAVRR-GDEILLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW 198 (256)
T ss_pred CCCEECCCCCCEEEEEEEe-CCEEEEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee
Confidence 3444455555566655554 6899999988654 58999999999999999999999999999999988888876543
Q ss_pred ccCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCccHHHHHHHHHHHHh
Q 021099 220 HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSA 281 (317)
Q Consensus 220 ~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~~~l~ 281 (317)
.. .+...+.|.+... ..++..+++|+.+++|++++|+..++.. ..+...+++..++
T Consensus 199 ~~--p~~lm~~f~a~~~--~~~~~~~~~Ei~~a~W~~~del~~lp~~--~sia~~li~~~~~ 254 (256)
T PRK00241 199 PF--PHSLMLGFHADYD--SGEIVFDPKEIADAQWFRYDELPLLPPS--GTIARRLIEDTVA 254 (256)
T ss_pred cC--CCeEEEEEEEEec--CCcccCCcccEEEEEEECHHHCcccCCc--hHHHHHHHHHHHH
Confidence 22 3445677777654 3345667789999999999999887654 4577777776655
No 46
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.3e-17 Score=134.66 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=80.2
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccce--eEEEEEEecccCC---Cce
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQSF---FEK 226 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~--~~~l~~~~~~~~~---~~~ 226 (317)
+++++++.++++||++++. .+.|.+|||++++||++.+||+||++||||+.+.. ...++........ ...
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence 5566777788999999873 47899999999999999999999999999999877 7776655442221 234
Q ss_pred EEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 227 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 227 ~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
..++|++.... .+ ....|+.+++|++++++...++.
T Consensus 78 ~~~~f~~~~~~---~~-~~~~e~~~~~W~~~~e~~~~~~~ 113 (118)
T cd04690 78 RATVYVAELTG---EP-VPAAEIEEIRWVDYDDPADDRLA 113 (118)
T ss_pred EEEEEEEcccC---Cc-CCCchhhccEEecHHHccccccC
Confidence 56667665432 22 34578899999999998776654
No 47
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.75 E-value=6.9e-18 Score=138.63 Aligned_cols=111 Identities=29% Similarity=0.305 Sum_probs=84.8
Q ss_pred EEEEEEEeC--CceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEec----ccCC-
Q 021099 151 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS----HQSF- 223 (317)
Q Consensus 151 ~v~~iv~~~--~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~----~~~~- 223 (317)
.|.+++++. +++|||++|.+. .++.|.+|||+++.||++.+||+||++||||+.+.....+..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence 577788887 899999999875 368999999999999999999999999999999876666654331 1111
Q ss_pred -CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 -FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 -~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.....++|+|.+.... ....++|+.+++|++++++.++...
T Consensus 80 ~~~~~~~~f~~~~~~~~--~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 80 GRVWTEHPFAFHLPSDA--VVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred ceEEEEeEEEEEcCCCC--cccCCccccccEecCHHHHHHHHcC
Confidence 2345677777664332 2345578899999999999887654
No 48
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.75 E-value=3e-17 Score=132.30 Aligned_cols=117 Identities=28% Similarity=0.434 Sum_probs=88.5
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEE
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 231 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 231 (317)
+.+++.++++++||++|+..+. .+|.|.||||+++.||++.+||.||+.||||+.+.....++...+..........+|
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~-~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKH-LGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF 82 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCC-CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence 4455667669999999987764 469999999999999999999999999999999877666766555554455566666
Q ss_pred EEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHH
Q 021099 232 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLK 273 (317)
Q Consensus 232 ~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~ 273 (317)
.+..... . ....|..++.|++++++.+++++ .++++++
T Consensus 83 ~~~~~~~--~--~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 121 (124)
T cd03425 83 LVELWSG--E--PQLLEHQELRWVPPEELDDLDFPPADVPIVA 121 (124)
T ss_pred EEeeeCC--C--cccccCceEEEeeHHHcccCCCCcccHHHHH
Confidence 6654322 2 12457788999999999999887 3444443
No 49
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=5.6e-18 Score=138.90 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=78.5
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcc-eeecCCCCCHHHHHHHHHHHHhCCccceeEE--EEEEecccCCCceE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV--LAFRQSHQSFFEKS 227 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~P-gG~ve~GEs~~eAAiREv~EEtGl~~~~~~~--l~~~~~~~~~~~~~ 227 (317)
.|.+++++++++|||+||.......+|.|++| ||++++||++ +||+||++||||+++....+ +........ ....
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~~ 79 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE-GFDD 79 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC-CeEE
Confidence 46778889889999999986554456899998 8999999999 99999999999999764433 232222221 1112
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
..+|.+ .........+++|+.+++|++++++.++..
T Consensus 80 ~~~~~~--~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 80 YYLFYA--DVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEEEEe--cCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 222322 222334456678999999999999987543
No 50
>PLN03143 nudix hydrolase; Provisional
Probab=99.75 E-value=4.8e-17 Score=150.85 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=137.5
Q ss_pred cceeeeecCccccccceeccccCCCcEEEecCCCCCHHHHHHHHHHHH-HHHHHcCcceeeEEcchhhhcchhHHHhcCc
Q 021099 41 AMSASVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGF 119 (317)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~d~~~gv~v~~~~~~~~~~f~~~l~~sl-~~w~~~~~~~vwl~l~~~~~~l~~~~~~~gf 119 (317)
.+..+++++++..+..|.-....-..|.|...+.++.++|.+++...+ .+|.+.-....-+ +..+...+-.+.++ +.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~-~v 95 (291)
T PLN03143 18 HKEASSSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGI-LAYGSMSLKQVLIQ-GV 95 (291)
T ss_pred eehhccCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhcccc-ccCCCceeEEEEEE-EE
Confidence 555666667777888898887778899999988899999998888777 8997765432110 00011111111111 11
Q ss_pred eeeecCCceEEEEee---cCCCCCCCCCCCc-ceeEEEEEEE-eCCce--EEEEEecCCCCCCCCcEEcceeecCC-CCC
Q 021099 120 WFHHAEPNYLMLVYW---IPGGANTLPANAS-HRVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDE-GED 191 (317)
Q Consensus 120 ~~h~~~~~~~~l~~w---l~~~~~~~p~~~~-~~v~v~~iv~-~~~g~--VLLv~r~~~~~~~~g~W~~PgG~ve~-GEs 191 (317)
.+-...-.|+.+..- ++++. .++.... +..+|+++++ +.+++ |+|+++.+.+. +.-.|+||||.+|+ +|+
T Consensus 96 d~fg~~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~ed 173 (291)
T PLN03143 96 DMFGKRIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGD 173 (291)
T ss_pred ecccCceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCC
Confidence 111223344444321 23332 3444433 2345666555 44444 89999988665 45789999999998 589
Q ss_pred HHHHHHHHHHHHhCCccceeEE--EE---------EEecccCCCceEEEEEEEEEccCCc---------cccCCccceee
Q 021099 192 ICVAAVREVKEETSIDTEFVEV--LA---------FRQSHQSFFEKSDIFFLCMLRPLSF---------DIQKQESEIEA 251 (317)
Q Consensus 192 ~~eAAiREv~EEtGl~~~~~~~--l~---------~~~~~~~~~~~~~~~f~~~l~~~~~---------~~~~~~~E~~~ 251 (317)
+.+||+||++||||+.+...++ +. .+....+..+...++|++....... ....++.|..+
T Consensus 174 p~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Ie 253 (291)
T PLN03143 174 FVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIK 253 (291)
T ss_pred HHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEE
Confidence 9999999999999998643322 31 3444445555666777774332111 11235578888
Q ss_pred EEEEeccccccCCC
Q 021099 252 AEWMPLEEYAAQPY 265 (317)
Q Consensus 252 ~~Wv~~~el~~~~~ 265 (317)
+.|++++++.++..
T Consensus 254 v~~vpl~eiw~~~a 267 (291)
T PLN03143 254 VHVVPYRELWRMTA 267 (291)
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999877753
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.75 E-value=1.3e-17 Score=136.79 Aligned_cols=109 Identities=31% Similarity=0.430 Sum_probs=81.3
Q ss_pred eEEEEEEEeCCc---eEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEE----ecccC
Q 021099 150 VGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR----QSHQS 222 (317)
Q Consensus 150 v~v~~iv~~~~g---~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~----~~~~~ 222 (317)
.++++++++.++ ++||++++. +.|.+|||++++||++.+||+||++||||+.+.....++.. .....
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVR 76 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEcccc
Confidence 467888887443 799999884 78999999999999999999999999999998877664211 11112
Q ss_pred CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
......++|++..... ..+..+ +|+.+++|++++++.++...
T Consensus 77 ~~~~~~~~f~~~~~~~-~~~~~~-~E~~~~~W~~~~e~~~~~~~ 118 (130)
T cd03428 77 GKLKTVTYFLAELRPD-VEVKLS-EEHQDYRWLPYEEALKLLTY 118 (130)
T ss_pred CcceEEEEEEEEeCCC-Cccccc-cceeeEEeecHHHHHHHcCc
Confidence 2345667788876522 233334 78999999999999987644
No 52
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.74 E-value=1.6e-17 Score=145.52 Aligned_cols=115 Identities=21% Similarity=0.177 Sum_probs=91.4
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEE
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDI 229 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 229 (317)
.+|.++.++++++|||+++.+.+. +...|+||||.+|+||++.+||+||++||||+++..+..++......+......+
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~ 126 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMN 126 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEE
Confidence 356777777788999999987654 4678999999999999999999999999999999999999887776666677777
Q ss_pred EEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 230 FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 230 ~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
+|+|...... ....++.|..++.|+|++++.++...
T Consensus 127 ~f~a~~~~~~-~~~~~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 127 IVLAEDLYPE-RLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred EEEEEccccc-cCCCCCCceeEEEEEcHHHHHHHHHc
Confidence 7887543221 22345677788999999999775444
No 53
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=4.1e-17 Score=142.37 Aligned_cols=111 Identities=23% Similarity=0.230 Sum_probs=82.8
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcE-EcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEE
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSD 228 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W-~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 228 (317)
.++.++|+|++++|||++|.....+.+|.| .+|||++++||++.+||+||++||||+.+.....++.............
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG 117 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence 456778889889999999876554445777 4799999999999999999999999998766555544433333233334
Q ss_pred EEEEEEEccCCccccCCccceeeEEEEeccccccC
Q 021099 229 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 229 ~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
.+|.+.. ......+++|+.+++|++++++.++
T Consensus 118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhh
Confidence 5555543 2344567789999999999999987
No 54
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.6e-17 Score=136.14 Aligned_cols=107 Identities=23% Similarity=0.417 Sum_probs=77.5
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcc-ceeEEEEEEec---cc----C
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAFRQS---HQ----S 222 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~-~~~~~l~~~~~---~~----~ 222 (317)
+|+++|++ +++|||+++++ .+.|.+|||++|+||++.+||+||++||||+.+ .....++.... .. .
T Consensus 2 ~~~~ii~~-~~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQ-GDKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEE-CCEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 57888887 58999999874 267999999999999999999999999999987 45555554321 11 1
Q ss_pred CCceEEEEEEEEEccCCccccCCccce---eeEEEEeccccccC
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQKQESEI---EAAEWMPLEEYAAQ 263 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~~~~~E~---~~~~Wv~~~el~~~ 263 (317)
.++...++|+|.+..........+.|. ..++|++++++.+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 134456788887754433343443333 35899999998763
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5e-17 Score=130.45 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=76.7
Q ss_pred EEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEEEEEE
Q 021099 156 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCML 235 (317)
Q Consensus 156 v~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~l 235 (317)
|...++++||++|.. +.|.+|||++++||++.+||.||++||||+.+.....+..... .....++|+|.+
T Consensus 6 i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~~ 75 (112)
T cd04667 6 ICRRGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVASV 75 (112)
T ss_pred EEecCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEEc
Confidence 334578999999863 7899999999999999999999999999999877666654432 123456677754
Q ss_pred ccCCccccCCccceeeEEEEeccccccCCCCc
Q 021099 236 RPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQ 267 (317)
Q Consensus 236 ~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 267 (317)
... ....++.|+.+++|++++++.++..+.
T Consensus 76 ~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~ 105 (112)
T cd04667 76 PPS--AQPKPSNEIADCRWLSLDALGDLNASA 105 (112)
T ss_pred CCc--CCCCCchheeEEEEecHHHhhhcccch
Confidence 322 233456789999999999999987763
No 56
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.3e-17 Score=138.47 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=82.6
Q ss_pred EEEEEEEeCC---ceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCccce--eEEEEEEecccC--
Q 021099 151 GVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQSHQS-- 222 (317)
Q Consensus 151 ~v~~iv~~~~---g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~--~~~l~~~~~~~~-- 222 (317)
+|.++|+|.+ +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.. +..++.......
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 83 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI 83 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence 4677888866 899999998765445799999 59999999999999999999999998643 334444332221
Q ss_pred ---CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccC
Q 021099 223 ---FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 223 ---~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
......++|++........+..+++|+.+++|++++++.++
T Consensus 84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 127 (144)
T cd04692 84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL 127 (144)
T ss_pred CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHH
Confidence 11234567777654322344566789999999999998764
No 57
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4e-17 Score=134.81 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=78.1
Q ss_pred eCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEE---EEecccCCCceEEEEEEEE
Q 021099 158 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA---FRQSHQSFFEKSDIFFLCM 234 (317)
Q Consensus 158 ~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~---~~~~~~~~~~~~~~~f~~~ 234 (317)
+++++|||++|... .+|.|.+|||++++||++.+||+||++||||+++....... ..............+|++.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 87 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF 87 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence 45689999999865 25899999999999999999999999999999986543221 1222211112234455555
Q ss_pred EccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHHH
Q 021099 235 LRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKYI 275 (317)
Q Consensus 235 l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~~ 275 (317)
.... ..+ ..++|..+++|++++++.++... .++.++..+
T Consensus 88 ~~~~-~~~-~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 127 (131)
T cd04695 88 VPPH-QEV-VLNHEHTEYRWCSFAEALELAPFPGQRALYDHV 127 (131)
T ss_pred ecCC-Ccc-ccCchhcccEecCHHHHHHhcCChhHHHHHHHH
Confidence 4322 122 33478999999999999987765 445555544
No 58
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.1e-17 Score=136.18 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=81.5
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcccee----EEEEEEecccC---
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV----EVLAFRQSHQS--- 222 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~----~~l~~~~~~~~--- 222 (317)
++|.++++|.+++|||+||.......+|.|.+|||++++||++.+||+||++||||+.+... .+++.......
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 46788889989999999998764334799999999999999999999999999999998653 45554322111
Q ss_pred ---C--CceEEEEEEEEEccC----CccccCCccceeeEEEEeccccccC
Q 021099 223 ---F--FEKSDIFFLCMLRPL----SFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 223 ---~--~~~~~~~f~~~l~~~----~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
. ......++++..... ...+..+++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 1 223333443332211 1123456689999999999998764
No 59
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=7.1e-17 Score=132.12 Aligned_cols=107 Identities=23% Similarity=0.207 Sum_probs=79.9
Q ss_pred EEEEEEeCC---ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcccee-EEEEEEecccCC----
Q 021099 152 VGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLAFRQSHQSF---- 223 (317)
Q Consensus 152 v~~iv~~~~---g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~-~~l~~~~~~~~~---- 223 (317)
+++++++.+ ++|||+++.+ .+.|.+|||++|.||++.+||+||++||||+.+... ..++.+......
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~ 77 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP 77 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence 566777643 6899999874 278999999999999999999999999999998777 777665543332
Q ss_pred CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 224 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 224 ~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
......+|.+...... ...+..|+.+++|++++++.++..
T Consensus 78 ~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 78 PRCEVAVFPLEVTEEL--DEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred ceEEEEEEEEEEeccc--cCCcccCceEEEEecHHHHHHhcC
Confidence 2455667766654322 222345678999999999977654
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.70 E-value=1.1e-16 Score=137.67 Aligned_cols=115 Identities=18% Similarity=0.300 Sum_probs=84.8
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcc-eeecCCCCCHHHHHHHHHHHHhCCccceeEEE-EEEecc--c-CC
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEVL-AFRQSH--Q-SF 223 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~P-gG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l-~~~~~~--~-~~ 223 (317)
..+|+++|++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+.+....++ ...... . ..
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 5567888899889999999987654468999996 89999999999999999999999998766654 222111 1 11
Q ss_pred --CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 224 --FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 224 --~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.....++|.+... .....+.+|+.+++|++++++.++...
T Consensus 110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHh
Confidence 1223456666542 233346789999999999999875443
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.69 E-value=2.5e-16 Score=150.35 Aligned_cols=113 Identities=26% Similarity=0.363 Sum_probs=82.1
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEE------Eeccc
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF------RQSHQ 221 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~------~~~~~ 221 (317)
..++|+++|++ +|+|||++|...+ +.|.|.+|||++|+||++.+||+||++||||+++....+.+. +....
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~ 278 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG 278 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCC
Confidence 44778887776 6799999998765 469999999999999999999999999999998765543322 11111
Q ss_pred -C-CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccC
Q 021099 222 -S-FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 222 -~-~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
. ......++|+|.+...........+|..+++|++++++..+
T Consensus 279 r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 279 RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 1 12345677777664332111234578899999999999875
No 62
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.69 E-value=3.3e-16 Score=137.08 Aligned_cols=115 Identities=15% Similarity=0.259 Sum_probs=83.5
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcc-eeecCCCCCHHHHHHHHHHHHhCCccceeEE-EEEEec----ccC
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRQS----HQS 222 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~P-gG~ve~GEs~~eAAiREv~EEtGl~~~~~~~-l~~~~~----~~~ 222 (317)
..+++++|++++++|||+||.......+|.|.+| ||++++||++.+||+||++||||+++..... ++.... ...
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 113 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNG 113 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCC
Confidence 4567788899889999999876543347889986 8999999999999999999999999864332 222211 111
Q ss_pred C-CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 223 F-FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 223 ~-~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
. .....++|++... ..+..+++|+.+++|++++++.++...
T Consensus 114 ~~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 114 IVENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred ceeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHh
Confidence 1 2234557777653 245567789999999999999876443
No 63
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=3.2e-16 Score=130.21 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=81.2
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcc-ceeEEEEE----EecccCCCc
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVLAF----RQSHQSFFE 225 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~-~~~~~l~~----~~~~~~~~~ 225 (317)
++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ .....+.. +........
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 6788999999999999987643224589999999999999999999999999999998 54444322 222222244
Q ss_pred eEEEEEEEEEccCCcc-cc--CC-ccceeeEEEEeccccccC
Q 021099 226 KSDIFFLCMLRPLSFD-IQ--KQ-ESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 226 ~~~~~f~~~l~~~~~~-~~--~~-~~E~~~~~Wv~~~el~~~ 263 (317)
...++|+|........ .. .. ..++..++|++++++.+.
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 5678888876532211 11 11 234668999999999886
No 64
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.67 E-value=3.2e-16 Score=137.31 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=93.3
Q ss_pred cceeEEEEEEEeC-CceEEEEEecCCCCC----CCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc
Q 021099 147 SHRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ 221 (317)
Q Consensus 147 ~~~v~v~~iv~~~-~g~VLLv~r~~~~~~----~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~ 221 (317)
.+..+|++++++. +++|||+++.+.+.. ++..|++|||++|+||++++||+||++||||+.+.....++......
T Consensus 42 ~~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~ 121 (185)
T TIGR00052 42 DRGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP 121 (185)
T ss_pred EcCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC
Confidence 4455788888875 479999999876542 35789999999999999999999999999999998888887766666
Q ss_pred CCCceEEEEEEEEEccCC--ccccCCccceeeEEEEeccccccCCCC
Q 021099 222 SFFEKSDIFFLCMLRPLS--FDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 222 ~~~~~~~~~f~~~l~~~~--~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
+..+...++|++...... .....+++|..++.|++++++.++...
T Consensus 122 g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~ 168 (185)
T TIGR00052 122 GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKE 168 (185)
T ss_pred CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHc
Confidence 667778888999754321 111224466678999999999887544
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.67 E-value=1.2e-15 Score=121.86 Aligned_cols=112 Identities=29% Similarity=0.463 Sum_probs=84.0
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccC--CCceEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSD 228 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~--~~~~~~ 228 (317)
+++++++++++++||++|... ..+.|.+|||+++.||++.++|+||+.||+|+.+.............. ......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV 78 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence 577888887799999999875 258999999999999999999999999999999865555544333222 344556
Q ss_pred EEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 229 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 229 ~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+|.|........ ..++.|..+.+|++++++.++...
T Consensus 79 ~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~~l~~~~~~ 115 (123)
T cd02883 79 FVFLARLVGGEPT-LLPPDEISEVRWVTLDELPALALS 115 (123)
T ss_pred EEEEEEeCCCCcC-CCCCCccceEEEEcHHHCcccccc
Confidence 6776755433221 245577889999999999886554
No 66
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.66 E-value=2.1e-15 Score=133.89 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=94.9
Q ss_pred cceeEEEEEEEeC-CceEEEEEecCCCCC----CCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEeccc
Q 021099 147 SHRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQ 221 (317)
Q Consensus 147 ~~~v~v~~iv~~~-~g~VLLv~r~~~~~~----~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~ 221 (317)
.+.-+|+++++++ +++|||+++.+.+.. ++-.|++|+|.+|+||++.+||+||+.||||+.+..+..+..+...+
T Consensus 47 ~~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~sp 126 (202)
T PRK10729 47 ERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASP 126 (202)
T ss_pred EcCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCC
Confidence 3445677787876 479999999887652 12579999999999999999999999999999998888888777777
Q ss_pred CCCceEEEEEEEEEccC---CccccCCccceeeEEEEeccccccCCCC
Q 021099 222 SFFEKSDIFFLCMLRPL---SFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 222 ~~~~~~~~~f~~~l~~~---~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
+......++|++..... ......++.|..++.|++++++.++...
T Consensus 127 g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~ 174 (202)
T PRK10729 127 GGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEE 174 (202)
T ss_pred CcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHc
Confidence 77888899999975221 1112345677888999999999886544
No 67
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.66 E-value=1.3e-15 Score=133.86 Aligned_cols=116 Identities=23% Similarity=0.244 Sum_probs=86.8
Q ss_pred ceeEEEEEEEe--CCceEEEEEecCCCCCCCCcEEcceeecCCC-CCHHHHHHHHHHHHhCCccceeEEEEEEecccCCC
Q 021099 148 HRVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF 224 (317)
Q Consensus 148 ~~v~v~~iv~~--~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~G-Es~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~ 224 (317)
++.+++++++. ++++||++||........|.|+||||.+|+| |++.+||+||++||||+.+..+..++.........
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~ 108 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSST 108 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccC
Confidence 34455555553 4568999998765544568999999999985 68999999999999999999999887766544444
Q ss_pred ceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCC
Q 021099 225 EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 225 ~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 264 (317)
+.....+++.+... .....+++|..++.|+|++++.++.
T Consensus 109 ~~~~~~~v~~~~~~-~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 109 GYQVTPVVGIIPPD-LPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred CcEEEEEEEEECCC-CCCCCChhhhheEEEEeHHHHhCcc
Confidence 55666666655332 2344577899999999999998864
No 68
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.65 E-value=1e-15 Score=130.71 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=80.5
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcc-eeecCCCCCHHHHHHHHHHHHhCCccceeE--EEEEEecccC---C
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVE--VLAFRQSHQS---F 223 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~P-gG~ve~GEs~~eAAiREv~EEtGl~~~~~~--~l~~~~~~~~---~ 223 (317)
.+++++|+|.+++|||+||.......+|.|++| ||+++.|| .+||+||++||||+++.... .+........ .
T Consensus 28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g 105 (158)
T TIGR02150 28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG 105 (158)
T ss_pred EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC
Confidence 457788999889999999987654457999997 89999999 49999999999999987654 2221111111 1
Q ss_pred CceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 224 FEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 224 ~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
......+|.|... . .+.++++|+.+++|++++++.++..
T Consensus 106 ~~~~~~~f~~~~~--~-~~~~~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 106 EHELCPVFFARAP--V-PLNPNPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred cEEEEEEEEEecC--C-cccCChhHeeeEEEeCHHHHHHHHh
Confidence 2334566666542 2 3455667999999999999987543
No 69
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.64 E-value=8.1e-16 Score=127.41 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEE-----EEeccc-------CCCce
Q 021099 159 GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA-----FRQSHQ-------SFFEK 226 (317)
Q Consensus 159 ~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~-----~~~~~~-------~~~~~ 226 (317)
+++++||+|+... ..|.|.||||++|+||++.+||+||++||||+.+... +++ ...... ...+.
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKAVRNEGIVGA 86 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcccccccCccc
Confidence 3678999998753 2489999999999999999999999999999987642 222 111111 11234
Q ss_pred EEEEEEEEEccCCccccCCccceeeEEEEeccccccCC
Q 021099 227 SDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 227 ~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 264 (317)
..++|.|..... .+. ...|+.+++|++++|+.++.
T Consensus 87 ~~~~f~~~~~~g--~~~-~~~e~~~~~W~~~~el~~~l 121 (132)
T cd04661 87 KVFFFKARYMSG--QFE-LSQNQVDFKWLAKEELQKYL 121 (132)
T ss_pred EEEEEEEEEecC--ccc-cCCCcceeEecCHHHHHhhc
Confidence 577888866432 332 23788999999999998854
No 70
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.63 E-value=5e-15 Score=130.31 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=95.3
Q ss_pred CcceeEEEEEEEeC-CceEEEEEecCCCCC-----CCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEec
Q 021099 146 ASHRVGVGAFVMNG-KREVLVVQENSGRFR-----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQS 219 (317)
Q Consensus 146 ~~~~v~v~~iv~~~-~g~VLLv~r~~~~~~-----~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~ 219 (317)
..+.-+|++++++. +++|+|+++.+.+.+ +.-.|++|+|.+|+| ++++||+||+.||||+.+..+..++....
T Consensus 42 v~~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~ 120 (191)
T PRK15009 42 YDRGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYM 120 (191)
T ss_pred EEECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEc
Confidence 34445677788875 679999999988751 446899999999976 69999999999999999999998888888
Q ss_pred ccCCCceEEEEEEEEEccC--CccccCCccceeeEEEEeccccccCCCC
Q 021099 220 HQSFFEKSDIFFLCMLRPL--SFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 220 ~~~~~~~~~~~f~~~l~~~--~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.++..+...++|++..... ......+++|..++.|+|++++.++...
T Consensus 121 spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~ 169 (191)
T PRK15009 121 SPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKT 169 (191)
T ss_pred CCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHc
Confidence 8888888899999975321 1122245678889999999999887544
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.62 E-value=6.4e-15 Score=138.91 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=87.1
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
.+.++|.+.+++|||+||.....+ .|.|+||||++++||++.+|+.||++||||+.+.....+....+..........+
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~ 85 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDV 85 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEE
Confidence 345556677789999999876554 5999999999999999999999999999999987666665555544444455556
Q ss_pred EEEEEccCCccccCCccceeeEEEEeccccccCCCC-ccHHHHHH
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV-QNQELLKY 274 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~-~~~~ii~~ 274 (317)
|.+.... .. .+..|..+++|++++++.+++++ ...++++.
T Consensus 86 y~~~~~~--~~--~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~ 126 (312)
T PRK08999 86 RRVTAWQ--GE--PHGREGQPLAWVAPDELAVYPFPPANQPIVRA 126 (312)
T ss_pred EEEEEec--Cc--ccCccCCccEEecHHHcccCCCCcchHHHHHH
Confidence 6554321 11 23456788899999999999887 33444443
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.61 E-value=5.9e-15 Score=128.53 Aligned_cols=113 Identities=15% Similarity=0.245 Sum_probs=81.4
Q ss_pred eEEEEEEEeCC--ceEEEEEecCCCCCCCCcE-EcceeecCCCCCHHHHHHHHHHHHhCCccceeE---EEEE---Eec-
Q 021099 150 VGVGAFVMNGK--REVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFVE---VLAF---RQS- 219 (317)
Q Consensus 150 v~v~~iv~~~~--g~VLLv~r~~~~~~~~g~W-~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~---~l~~---~~~- 219 (317)
+.+-+++.|.+ ++||++||.......+|.| .+|||++++||++.+||+||++||||+++.... .++. ...
T Consensus 35 v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~ 114 (180)
T cd03676 35 VHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREG 114 (180)
T ss_pred EEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEc
Confidence 33335566765 8999999998877679999 489999999999999999999999999987543 2221 111
Q ss_pred -ccCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccC
Q 021099 220 -HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 220 -~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
.........++|.+.+. ....+..+++|+.++.|++++|+.++
T Consensus 115 ~~~~~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 115 EAGGLQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred CCCcEeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 11112344556666542 22234567789999999999999764
No 73
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=3.7e-14 Score=115.39 Aligned_cols=57 Identities=28% Similarity=0.369 Sum_probs=44.8
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccce
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 210 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~ 210 (317)
.+++++...+ .+||++|...+ +.+.|+||||++|+||++.+||.||+.||||+++..
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 3444444444 46667766544 468999999999999999999999999999999864
No 74
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=3.8e-14 Score=115.37 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=78.1
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEE
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIF 230 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 230 (317)
+|.+++++ ++++||++++. +.|++|||++++||++.+||.||++||||+.+.....++.+............+
T Consensus 2 ~v~vi~~~-~~~vLl~~~~~------~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~ 74 (118)
T cd04665 2 SVLVICFY-DDGLLLVRHKD------RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLV 74 (118)
T ss_pred EEEEEEEE-CCEEEEEEeCC------CEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEE
Confidence 35556665 57999998862 579999999999999999999999999999998888887766554434556677
Q ss_pred EEEEEccCCccccCCccceeeEEEEecccc
Q 021099 231 FLCMLRPLSFDIQKQESEIEAAEWMPLEEY 260 (317)
Q Consensus 231 f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el 260 (317)
|.+...... ......|+....|++.+..
T Consensus 75 y~a~~~~~~--~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 75 YPAVSAQLE--EKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEEecc--cccccccccCcEEeccCCc
Confidence 777654332 2235589999999997654
No 75
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.57 E-value=2.2e-13 Score=115.86 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=81.5
Q ss_pred ceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceE
Q 021099 148 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKS 227 (317)
Q Consensus 148 ~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~ 227 (317)
++..|.++++. ++++||+++.. ..|++|||++|+||++.+||+||++||||+.+.....++.+..........
T Consensus 23 ~~~~V~ii~~~-~~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~ 95 (156)
T TIGR02705 23 NPNHVLVIPRY-KDQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFV 95 (156)
T ss_pred CCCEEEEEEEE-CCEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEE
Confidence 34466666666 45899988763 349999999999999999999999999999999999998877766656667
Q ss_pred EEEEEEEEccCCccccCCccceeeEE-EEeccccccCCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAE-WMPLEEYAAQPYV 266 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~-Wv~~~el~~~~~~ 266 (317)
..+|+|...... .. +|..+.. +++++++.++...
T Consensus 96 ~~vf~A~~~~~~----~~-~e~~E~~~~~~~~~~~~~~~~ 130 (156)
T TIGR02705 96 KDVYFAEVSALE----SK-DDYLETKGPVLLQEIPDIIKA 130 (156)
T ss_pred EEEEEEEEeccc----cC-CCceeeEeEEEHHHHHHHHhc
Confidence 888888765321 11 4544555 7999998765433
No 76
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.56 E-value=5.1e-14 Score=115.41 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=67.0
Q ss_pred EEEEEEEe---CCceEEEEEecCCCC--CCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCc
Q 021099 151 GVGAFVMN---GKREVLVVQENSGRF--RGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFE 225 (317)
Q Consensus 151 ~v~~iv~~---~~g~VLLv~r~~~~~--~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~ 225 (317)
++|+++++ +..+|||+++..... ...+.|++|||+++.||++.+||+||++||||+++. ...+...... ...+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~-~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLK-QSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEE-CCCC
Confidence 46677775 235799998743210 145889999999999999999999999999999876 2232221111 1123
Q ss_pred eEEEEEEEEEccC--------------CccccCC-ccceeeEEEEec
Q 021099 226 KSDIFFLCMLRPL--------------SFDIQKQ-ESEIEAAEWMPL 257 (317)
Q Consensus 226 ~~~~~f~~~l~~~--------------~~~~~~~-~~E~~~~~Wv~~ 257 (317)
...++|++..... +...... .+|..+++|+|+
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 3445555533211 1122232 578899999984
No 77
>PLN02709 nudix hydrolase
Probab=99.53 E-value=9.1e-14 Score=124.13 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=83.6
Q ss_pred ceEEEEEecCCCCCCCCcEEcceeecCCC-CCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEEEEEEcc-C
Q 021099 161 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRP-L 238 (317)
Q Consensus 161 g~VLLv~r~~~~~~~~g~W~~PgG~ve~G-Es~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~l~~-~ 238 (317)
.+|||++|.......+|.|.||||++|+| +++.+||+||++||+||.....++++.........+....-|++.+.. .
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 48999999886544579999999999996 579999999999999999998899987766555566667777776643 2
Q ss_pred CccccCCccceeeEEEEeccccccCC
Q 021099 239 SFDIQKQESEIEAAEWMPLEEYAAQP 264 (317)
Q Consensus 239 ~~~~~~~~~E~~~~~Wv~~~el~~~~ 264 (317)
......+++|+.++.|+|++++.+..
T Consensus 131 ~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 131 AFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CccccCChhhhheeEEecHHHHhCCc
Confidence 23444677999999999999987644
No 78
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.9e-14 Score=130.08 Aligned_cols=135 Identities=24% Similarity=0.273 Sum_probs=101.0
Q ss_pred CceeeecCCceEEEEeecCCCCCCCCCCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHH
Q 021099 118 GFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 197 (317)
Q Consensus 118 gf~~h~~~~~~~~l~~wl~~~~~~~p~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAi 197 (317)
|-.......++.+.+ +. +....++..-..|-++|.+++ ++||.++.++. +|.+..-+|+||+|||+++|+.
T Consensus 118 G~~~~~~~~g~~~~C---~~--cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~ 188 (279)
T COG2816 118 GTKTYPREGGWARVC---PK--CGHEHFPRIDPCVIVAVIRGD-EILLARHPRHF---PGMYSLLAGFVEPGETLEQAVA 188 (279)
T ss_pred CCcCccccCceeeeC---CC--CCCccCCCCCCeEEEEEecCC-ceeecCCCCCC---CcceeeeeecccCCccHHHHHH
Confidence 333344445555542 32 334444555556666677644 48888888765 5999999999999999999999
Q ss_pred HHHHHHhCCccceeEEEEEEecccCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccc-cccCCC
Q 021099 198 REVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEE-YAAQPY 265 (317)
Q Consensus 198 REv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~e-l~~~~~ 265 (317)
||++||+||+++.+.+++...+... +..++-|.+... ++++..++.|+.+++|++.+| ++.++-
T Consensus 189 REv~EE~Gi~V~~vrY~~SQPWPfP--~SLMigf~aey~--sgeI~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 189 REVFEEVGIKVKNVRYVGSQPWPFP--HSLMLGFMAEYD--SGEITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred HHHHHhhCeEEeeeeEEeccCCCCc--hhhhhhheeeec--cccccCCcchhhhccccCHhHHhhhcCC
Confidence 9999999999999999988777654 345666777554 456888999999999999999 677765
No 79
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.47 E-value=7.2e-13 Score=108.85 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=63.1
Q ss_pred EEEEEEeCCc--eEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEE-EEEEecccCCCceEE
Q 021099 152 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV-LAFRQSHQSFFEKSD 228 (317)
Q Consensus 152 v~~iv~~~~g--~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~-l~~~~~~~~~~~~~~ 228 (317)
|.+++.+.++ +||+.+... +.|++|||.+++||++.+||+||++||||+.+..... ...........+...
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW 76 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence 4555665443 666665542 4599999999999999999999999999999732221 122221111122334
Q ss_pred EEEEEEEcc---CCccccCC--ccceeeEEEEeccccccC
Q 021099 229 IFFLCMLRP---LSFDIQKQ--ESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 229 ~~f~~~l~~---~~~~~~~~--~~E~~~~~Wv~~~el~~~ 263 (317)
+++++.... ........ +.+...+.|++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence 444444321 12111222 333445559999998553
No 80
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.46 E-value=1.1e-12 Score=119.51 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=86.8
Q ss_pred CCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcc-eeecCCCCC-----------------HHHHHHHHHHHHhCC
Q 021099 145 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGED-----------------ICVAAVREVKEETSI 206 (317)
Q Consensus 145 ~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~P-gG~ve~GEs-----------------~~eAAiREv~EEtGl 206 (317)
...|+ ++.++|+|.+|++||+||.......+|.|+.. +|++..||+ ..+||+||++|||||
T Consensus 53 gl~Hr-a~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 53 GLLHR-AFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CceEE-EEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 34454 58888999999999999998877778999774 566555432 678999999999999
Q ss_pred ccce-----eEEEEEEecccCCC-----------ceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCC---C-
Q 021099 207 DTEF-----VEVLAFRQSHQSFF-----------EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY---V- 266 (317)
Q Consensus 207 ~~~~-----~~~l~~~~~~~~~~-----------~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~---~- 266 (317)
.+.. +..++.+....... ...+++|+.. .....++.++++|+.+++|++++++.++.- +
T Consensus 132 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~-~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~ 210 (247)
T PLN02552 132 PAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIR-PVRDVKVNPNPDEVADVKYVNREELKEMMRKESGL 210 (247)
T ss_pred CccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEE-ecCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCc
Confidence 9643 33343222111111 2333333321 222336678889999999999999988632 1
Q ss_pred ccHHHHHHHHHHHH
Q 021099 267 QNQELLKYIVDICS 280 (317)
Q Consensus 267 ~~~~ii~~~~~~~l 280 (317)
.-.+.++.+++.++
T Consensus 211 ~~tpw~~~~~~~~l 224 (247)
T PLN02552 211 KLSPWFRLIVDNFL 224 (247)
T ss_pred ccCHHHHHHHHHHH
Confidence 12344555555544
No 81
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.46 E-value=1.1e-12 Score=114.69 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=73.4
Q ss_pred EEEEEEeC---CceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeE----------------
Q 021099 152 VGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE---------------- 212 (317)
Q Consensus 152 v~~iv~~~---~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~---------------- 212 (317)
.++++.+. .-+||+++|.. .+.|.||||++|+||++.+||+||+.||||+.++...
T Consensus 37 ~~~i~~~~~~~~l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~ 111 (186)
T cd03670 37 DGSIHPKSGKPILQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKD 111 (186)
T ss_pred CEEEEecCCCCeeEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhccc
Confidence 34445543 24788889863 4889999999999999999999999999976532110
Q ss_pred EEEEE----eccc-CCCce-EEEEEEEEEccCC--cccc-CCccceeeEEEEeccccccCCCCccHHHHHHHHH
Q 021099 213 VLAFR----QSHQ-SFFEK-SDIFFLCMLRPLS--FDIQ-KQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVD 277 (317)
Q Consensus 213 ~l~~~----~~~~-~~~~~-~~~~f~~~l~~~~--~~~~-~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~ 277 (317)
.+.++ .... +.... ..+.|.+...... .... ...+|..+++|+++++++.+.+++ ..+++++++
T Consensus 112 ~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-~~Il~~a~~ 184 (186)
T cd03670 112 GVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-SQFLKKVAE 184 (186)
T ss_pred ccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-HHHHHHHHH
Confidence 11111 1111 11111 2233333222111 0111 234678999999999999887776 577776654
No 82
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.46 E-value=1.2e-14 Score=133.07 Aligned_cols=112 Identities=24% Similarity=0.311 Sum_probs=80.3
Q ss_pred CcceeEEEEEEEeCCc-eEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCC
Q 021099 146 ASHRVGVGAFVMNGKR-EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF 224 (317)
Q Consensus 146 ~~~~v~v~~iv~~~~g-~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~ 224 (317)
+.....|.++|++.++ +.||.|.++. .+|.|..++|++|+||+++|||+||++||||++++.+.+.....+.. +
T Consensus 184 Pr~dPvVIm~li~~d~~~~LL~R~~r~---~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~--~ 258 (345)
T KOG3084|consen 184 PRTDPVVIMLLIDHDGKHALLGRQKRY---PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL--M 258 (345)
T ss_pred cCCCCeEEEEEEcCCCCEeeeecccCC---CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC--C
Confidence 3333456667777665 5555554444 36899999999999999999999999999999999988776655541 2
Q ss_pred ceEEEEEEEEEccCCccccCCcc-ceeeEEEEecccccc
Q 021099 225 EKSDIFFLCMLRPLSFDIQKQES-EIEAAEWMPLEEYAA 262 (317)
Q Consensus 225 ~~~~~~f~~~l~~~~~~~~~~~~-E~~~~~Wv~~~el~~ 262 (317)
..+.+...+.+.....+++.+.+ |..+++|++-+|+.+
T Consensus 259 p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 259 PQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred chHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 33333332223333367777776 999999999988754
No 83
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.35 E-value=3.1e-12 Score=105.38 Aligned_cols=114 Identities=22% Similarity=0.314 Sum_probs=77.6
Q ss_pred cceeEEEEEEEeCC-c--eEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCC
Q 021099 147 SHRVGVGAFVMNGK-R--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSF 223 (317)
Q Consensus 147 ~~~v~v~~iv~~~~-g--~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~ 223 (317)
..+..+|+|++..+ . +|||++-.+. +..|-+|+|++|+||+..+||+||++||.|+......+++........
T Consensus 7 G~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~ 82 (145)
T KOG2839|consen 7 GFRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSK 82 (145)
T ss_pred CcEEEEEeeeeeecCcceEEEEEecCCC----CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccCh
Confidence 34566777777643 3 8999998874 367999999999999999999999999999999888866444322222
Q ss_pred --CceE-EEEEEEEEccCCccc-cCCccceeeEEEEeccccccCCC
Q 021099 224 --FEKS-DIFFLCMLRPLSFDI-QKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 224 --~~~~-~~~f~~~l~~~~~~~-~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
.+.. ...|... .....+. .....|..+.+|+.++|......
T Consensus 83 ~~~~~~k~~~~~l~-v~e~le~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 83 KHRTKPKGVMYVLA-VTEELEDWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred hhcccccceeehhh-hhhhcccChhhhcccceeEEeeHHHHHHHHh
Confidence 1121 1222221 2222221 12345688999999999877543
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=99.58 Aligned_cols=111 Identities=32% Similarity=0.521 Sum_probs=71.6
Q ss_pred EEEEEEeCC-ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHH-HHHHHHHHHhCCccc--eeEEEEEEecccCCCc--
Q 021099 152 VGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSIDTE--FVEVLAFRQSHQSFFE-- 225 (317)
Q Consensus 152 v~~iv~~~~-g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~e-AAiREv~EEtGl~~~--~~~~l~~~~~~~~~~~-- 225 (317)
+.+++.... +++|+++++... +.|.+|||++|+||++.+ ||+||++||||+.+. ....++..........
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV 89 (161)
T ss_pred EEEEEecCCCCEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence 333344433 789999988642 589999999999999888 999999999999988 4555555444333221
Q ss_pred --eE-EEEEEEEEcc-CCccccCC---ccceeeEEEEeccccccCCCC
Q 021099 226 --KS-DIFFLCMLRP-LSFDIQKQ---ESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 226 --~~-~~~f~~~l~~-~~~~~~~~---~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.. ..++.+.... ........ ..|...+.|++++++......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence 11 2222222111 11111111 257889999999999886554
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.31 E-value=9.9e-12 Score=128.31 Aligned_cols=113 Identities=22% Similarity=0.306 Sum_probs=83.3
Q ss_pred eEEEEEEEeC-CceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCccce--eEEEEEEec----cc
Q 021099 150 VGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLAFRQS----HQ 221 (317)
Q Consensus 150 v~v~~iv~~~-~g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~--~~~l~~~~~----~~ 221 (317)
.++.++|+|. +++|||+||.......+|.|++ ||||++.||+..+||+||++||+||.+.. ...++.+.. ..
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~ 112 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND 112 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence 4678888886 6999999998877777999999 79999999999999999999999998643 333433211 11
Q ss_pred CC--CceEEEEEEEEEccC--CccccCCccceeeEEEEecccccc
Q 021099 222 SF--FEKSDIFFLCMLRPL--SFDIQKQESEIEAAEWMPLEEYAA 262 (317)
Q Consensus 222 ~~--~~~~~~~f~~~l~~~--~~~~~~~~~E~~~~~Wv~~~el~~ 262 (317)
.. .+..+.+|++..... ..++.++++|+.+++|++++|+.+
T Consensus 113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 11 223455666543211 124567889999999999999974
No 86
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.26 E-value=8.2e-11 Score=94.15 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=76.4
Q ss_pred EEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEEEE
Q 021099 154 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLC 233 (317)
Q Consensus 154 ~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 233 (317)
++++.+++++||.||.....+ .|.|+||+|.++.+|+..++..||+.||.++ ....++...+..+++.....+|.|
T Consensus 7 ~~ii~~~~~~ll~kR~~~gl~-~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~ 82 (118)
T cd03431 7 VVVIRNDGRVLLEKRPEKGLL-AGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA 82 (118)
T ss_pred EEEEecCCeEEEEECCCCCCC-CcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence 334455789999999888777 4999999999999999999999999999775 222345555666666667777777
Q ss_pred EEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 234 MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 234 ~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
...... .+..+++|++++++.+++++
T Consensus 83 ~~~~~~-------~~~~~~~W~~~eel~~~~~p 108 (118)
T cd03431 83 RLEGDL-------LAPDEGRWVPLEELDEYALP 108 (118)
T ss_pred EEeCCC-------cCccccEEccHHHHhhCCCC
Confidence 553211 23456799999999998876
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.15 E-value=4.3e-10 Score=96.97 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=69.9
Q ss_pred ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEEEEEEccCCc
Q 021099 161 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSF 240 (317)
Q Consensus 161 g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~l~~~~~ 240 (317)
-.++|+++.+.|. |.-..++|+|.+|.||+++.||+||++||||+..+....-......++..+......++.+.....
T Consensus 88 ~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~p 166 (225)
T KOG3041|consen 88 PYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVP 166 (225)
T ss_pred EEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCc
Confidence 4788888888775 556789999999999999999999999999999544433222223334444444444444432221
Q ss_pred -----cccCCccceeeEEEEecccccc
Q 021099 241 -----DIQKQESEIEAAEWMPLEEYAA 262 (317)
Q Consensus 241 -----~~~~~~~E~~~~~Wv~~~el~~ 262 (317)
...+++.|..++.-++..+|.+
T Consensus 167 Enqrp~q~ledgEfIev~~i~~~~L~~ 193 (225)
T KOG3041|consen 167 ENQRPVQQLEDGEFIEVFLIPLSELWR 193 (225)
T ss_pred cccCccccCCCCceEEEEEeeHHHHHH
Confidence 1234568888999898888765
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.01 E-value=1e-09 Score=97.35 Aligned_cols=113 Identities=23% Similarity=0.237 Sum_probs=82.8
Q ss_pred EEEEEEEeC---CceEEEEEecCCCCCCCCcEEcceeecCCC-CCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCce
Q 021099 151 GVGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEK 226 (317)
Q Consensus 151 ~v~~iv~~~---~g~VLLv~r~~~~~~~~g~W~~PgG~ve~G-Es~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~ 226 (317)
+|.+.+++. +-.||+.||.+.-....|.-+||||..|+. ++-..||.||.+||.|++.+...+++.........+.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~ 124 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGW 124 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCc
Confidence 444444443 247999999887776789999999999984 5777899999999999999888888765554443444
Q ss_pred EEEEEEEEEccCC--ccccCCccceeeEEEEeccccccC
Q 021099 227 SDIFFLCMLRPLS--FDIQKQESEIEAAEWMPLEEYAAQ 263 (317)
Q Consensus 227 ~~~~f~~~l~~~~--~~~~~~~~E~~~~~Wv~~~el~~~ 263 (317)
...-+++.+.... .....+..|...+.|+|++++..-
T Consensus 125 ~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 125 SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred ccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 4444444433221 345577899999999999998763
No 89
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.96 E-value=2.9e-09 Score=85.61 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=70.2
Q ss_pred EEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEEEE
Q 021099 154 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLC 233 (317)
Q Consensus 154 ~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~ 233 (317)
+++++.+|++||.||.....++ |.|+||.-..+. ++..+.+.+.+.+..|+.+.....++...+..++......+|.+
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 5778889999999999988885 999999988874 43456666667788898877777778888888888888888888
Q ss_pred EEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 234 MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 234 ~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+...... +....+|++.+++.+++++
T Consensus 80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p 106 (114)
T PF14815_consen 80 EVSADPPA------EPEEGQWVSLEELDQYPLP 106 (114)
T ss_dssp EEE-SS----------TTEEEEEGGGGGGS---
T ss_pred EecCCCCC------CCCCcEEEEHHHHhhCCCC
Confidence 77543221 4567899999999999986
No 90
>PLN02839 nudix hydrolase
Probab=98.85 E-value=1.4e-07 Score=89.77 Aligned_cols=169 Identities=17% Similarity=0.218 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCcceeeEEcchhhhcchhHHHhcCceeeec--CCceEEEEeecCCCCCCCCCCCcceeEEE
Q 021099 76 DPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHA--EPNYLMLVYWIPGGANTLPANASHRVGVG 153 (317)
Q Consensus 76 ~~~~f~~~l~~sl~~w~~~~~~~vwl~l~~~~~~l~~~~~~~gf~~h~~--~~~~~~l~~wl~~~~~~~p~~~~~~v~v~ 153 (317)
++++-.++|...+..|++++.=.=| ..++ |..... .+-+..+ ......+-...+.-+.+.
T Consensus 148 t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~--------y~V~~~~~~~~l~~i----ERaA~~lfGi~tyGVHlN 209 (372)
T PLN02839 148 KPEDRTRAVADVIKILGDKGIIPGI------RNEL--------YPVKPSFNAPVFFSL----ERAAAPYFGIKGYGVHMN 209 (372)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCc------ccCc--------cccccCCCCcceEEE----eeccccccCceeEEEEEE
Confidence 5778888899888999998751112 1222 222222 1223333 223333444455556666
Q ss_pred EEEEe-CCceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCccce---eEEEEEEeccc--CCCce
Q 021099 154 AFVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEF---VEVLAFRQSHQ--SFFEK 226 (317)
Q Consensus 154 ~iv~~-~~g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~---~~~l~~~~~~~--~~~~~ 226 (317)
+++.. ++.++.+.||...+...+|+|+- .+|++..||++.++++||++||.||.... ....+...... ...-.
T Consensus 210 Gyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~ 289 (372)
T PLN02839 210 GYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFK 289 (372)
T ss_pred EEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccc
Confidence 66654 33678888888877777999976 89999999999999999999999997542 22233322211 11112
Q ss_pred EEEEEEEEEc-cCCccccCCccceeeEEEEecccccc
Q 021099 227 SDIFFLCMLR-PLSFDIQKQESEIEAAEWMPLEEYAA 262 (317)
Q Consensus 227 ~~~~f~~~l~-~~~~~~~~~~~E~~~~~Wv~~~el~~ 262 (317)
....|+..+. +.+..+..++.|++++.+++++|+.+
T Consensus 290 ~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 290 RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVAN 326 (372)
T ss_pred cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence 2334433332 22344567889999999999999874
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.84 E-value=7.4e-09 Score=87.97 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=85.1
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCccceeEEE----EEEecc--cC
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVL----AFRQSH--QS 222 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l----~~~~~~--~~ 222 (317)
.+..++++|.+|++||.||...+...++.|.- ..||--+||+..+||+|-+.+|+||+......+ .+.+.. ..
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~ 113 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPD 113 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCC
Confidence 46778999999999999998877767899977 678999999999999999999999998743322 222211 11
Q ss_pred CCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
......+.++......+ ...+.++|..+++|++++++.++.-.
T Consensus 114 ~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 114 GIVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred CcceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcC
Confidence 12333333333333333 55677899999999999999887655
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.67 E-value=8.6e-08 Score=77.26 Aligned_cols=127 Identities=26% Similarity=0.350 Sum_probs=80.8
Q ss_pred eEEEEEEEeC-Cc--eEEEEEecCCCCC---CCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcccee-EEEEEEecccC
Q 021099 150 VGVGAFVMNG-KR--EVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLAFRQSHQS 222 (317)
Q Consensus 150 v~v~~iv~~~-~g--~VLLv~r~~~~~~---~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~-~~l~~~~~~~~ 222 (317)
.+++++++.. .| .|||++- .+|+| +.|.|++|.|....||++..||.||.-||+||.+.-- ..++.. ..
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHP-GGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~---kQ 79 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHP-GGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL---KQ 79 (161)
T ss_pred ccceeEEEEecCCCEEEEEecC-CCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh---cc
Confidence 3577777762 23 5566543 44444 3589999999999999999999999999999987321 111211 11
Q ss_pred CCceEEEEEEE----------------EEccCCccccCCccceeeEEEEeccccccCCCCccHHHHHHHHHHHHh
Q 021099 223 FFEKSDIFFLC----------------MLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQNQELLKYIVDICSA 281 (317)
Q Consensus 223 ~~~~~~~~f~~----------------~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~ii~~~~~~~l~ 281 (317)
..++....|-. .-.+.++.. ..-.|.+.+.|+++.|........+++++..+.+...+
T Consensus 80 ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M-~~FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~~~a 153 (161)
T COG4119 80 SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKM-RKFPEVDRAGWFPLAEARTKILKGQRPFLDRLMAHAVA 153 (161)
T ss_pred CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCcc-ccCcccccccceecHHHHhHHhhccchHHHHHHHHhcc
Confidence 12333333332 222222221 12267889999999998876666668888887776444
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.82 E-value=6.8e-05 Score=66.16 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=34.6
Q ss_pred eEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHh
Q 021099 162 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 204 (317)
Q Consensus 162 ~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEt 204 (317)
+++.+||.. .+.|.+|||.+|+||.+..+..||+.||.
T Consensus 140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 678888884 58999999999999999999999999996
No 94
>PRK10880 adenine DNA glycosylase; Provisional
Probab=97.67 E-value=0.00026 Score=67.93 Aligned_cols=105 Identities=13% Similarity=0.137 Sum_probs=62.3
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEE
Q 021099 149 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSD 228 (317)
Q Consensus 149 ~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 228 (317)
.....++++.+++++|+.||.....++ |.|+||.. +. +...+|..|+.|+.......++...+..+++....
T Consensus 230 ~~~~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~ 301 (350)
T PRK10880 230 ERTGYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQF--AD-----EEELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDI 301 (350)
T ss_pred eEEEEEEEEEECCEEEEEECCccChhh-ccccCCCC--cc-----hhhHHHHHHhcCCchhhhcccCceEEEEeeEEEEE
Confidence 334444555567899999999888875 99999963 21 11246666888876322222334444444444555
Q ss_pred EEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 229 IFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 229 ~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
..|.+........ .. . ....|++++++.+++++
T Consensus 302 ~~~~~~~~~~~~~--~~-~--~~~~w~~~~~~~~~~~p 334 (350)
T PRK10880 302 VPMWLPVSSFTGC--MD-E--GNGLWYNLAQPPSVGLA 334 (350)
T ss_pred EEEEEEccccccc--cC-C--cCCeEechHHhcccCCc
Confidence 5555543211100 11 1 23369999999999986
No 95
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.47 E-value=0.00014 Score=63.39 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=84.9
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEc-ceeec-------C--CCCCHHHHHHHHHHHHhCCccceeE-----EE
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVV-------D--EGEDICVAAVREVKEETSIDTEFVE-----VL 214 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~-PgG~v-------e--~GEs~~eAAiREv~EEtGl~~~~~~-----~l 214 (317)
.+..++++|.++++||+||.......++.|.- +.+|. + .+.....||+|-+.=|+||..+.+. .+
T Consensus 53 RaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~l 132 (225)
T KOG0142|consen 53 RAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFL 132 (225)
T ss_pred heeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccc
Confidence 36778999999999999999877666777753 12221 1 1335789999999999999875443 34
Q ss_pred EEEec---ccCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCCc---cHHHHHHHHHH
Q 021099 215 AFRQS---HQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQ---NQELLKYIVDI 278 (317)
Q Consensus 215 ~~~~~---~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~---~~~ii~~~~~~ 278 (317)
+.++. ..+..+...+-|+..+.. +..++++++|+.+++|++.+|+.++.-.. --+.++.+.+.
T Consensus 133 trihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~ 201 (225)
T KOG0142|consen 133 TRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISEN 201 (225)
T ss_pred eeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHH
Confidence 33332 233455555555554443 44667788999999999999998754331 12444444444
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.46 E-value=2.1e-05 Score=73.28 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=69.7
Q ss_pred CcceeEEEEEEEeCC-ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEE--EEEEecccC
Q 021099 146 ASHRVGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV--LAFRQSHQS 222 (317)
Q Consensus 146 ~~~~v~v~~iv~~~~-g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~--l~~~~~~~~ 222 (317)
.......+++++|.. .++||++... ...|.||-|++..+|+-.+||+|||.||||.+....-. .++ .. .
T Consensus 79 k~~iPv~ga~ild~~~sr~llv~g~q-----a~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~I-e~--n 150 (348)
T KOG2937|consen 79 KARIPVRGAIILDEKRSRCLLVKGWQ-----ASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGI-ET--N 150 (348)
T ss_pred cCCCCCchHhhhhhhhhhhheeecee-----cccccccCccccccchhhhcchhcccchhhcCHHHHhccccCc-cc--c
Confidence 344456788888865 6889988874 34599999999999999999999999999998743211 111 11 1
Q ss_pred CCceEEEEEEEEEccCCcccc-CCccceeeEEEEeccccc
Q 021099 223 FFEKSDIFFLCMLRPLSFDIQ-KQESEIEAAEWMPLEEYA 261 (317)
Q Consensus 223 ~~~~~~~~f~~~l~~~~~~~~-~~~~E~~~~~Wv~~~el~ 261 (317)
.-+.....|+.-....+.... .-..|+..+.|..++++.
T Consensus 151 I~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~ 190 (348)
T KOG2937|consen 151 IRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV 190 (348)
T ss_pred hhhceeeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence 122223333331111111111 123688889999999983
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.41 E-value=0.0025 Score=53.87 Aligned_cols=107 Identities=22% Similarity=0.331 Sum_probs=71.5
Q ss_pred EEEEEeCCceEEEEEecCCCCC--CCCcEEc-ceeecCCCC--C-HHH----HHHHHHHHHhCCc---cceeEEEEEEec
Q 021099 153 GAFVMNGKREVLVVQENSGRFR--GTGIWKF-PTGVVDEGE--D-ICV----AAVREVKEETSID---TEFVEVLAFRQS 219 (317)
Q Consensus 153 ~~iv~~~~g~VLLv~r~~~~~~--~~g~W~~-PgG~ve~GE--s-~~e----AAiREv~EEtGl~---~~~~~~l~~~~~ 219 (317)
.++|.+ ..+||+-.|-.+... -.+.+++ -|||+..++ + ..+ .+.||+.||.++. ...+..+++...
T Consensus 65 Yvvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 65 YVVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred EEEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 345555 459999988754311 1367777 699998765 2 222 3789999999998 566677787776
Q ss_pred ccCCCceEEE--EEEEEEccCCccccCCccceeeEEEEecccccc
Q 021099 220 HQSFFEKSDI--FFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAA 262 (317)
Q Consensus 220 ~~~~~~~~~~--~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~ 262 (317)
.....++..+ +|...+.. .+....+.+..+++|+.++++.+
T Consensus 144 d~neVgkVHiG~lf~~~~k~--ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 144 DTNEVGKVHIGALFLGRGKF--NDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CCcccceEEEEEEEEeeccc--cceeeeecceeeeeeeeHHHHHH
Confidence 6555555443 44444433 23445567788899999999987
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.47 E-value=0.0045 Score=57.17 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=62.0
Q ss_pred eeEEEEEEEeCC-ceEEEEEecCCCCC------------------------CCCcEEcceeecCCCCCHHHHHHHHHHHH
Q 021099 149 RVGVGAFVMNGK-REVLVVQENSGRFR------------------------GTGIWKFPTGVVDEGEDICVAAVREVKEE 203 (317)
Q Consensus 149 ~v~v~~iv~~~~-g~VLLv~r~~~~~~------------------------~~g~W~~PgG~ve~GEs~~eAAiREv~EE 203 (317)
.-+|.+++++.+ .++|++++.+.... -+-..+++||.||+.-++.+-|..|+.||
T Consensus 26 ~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee 105 (405)
T KOG4432|consen 26 MSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE 105 (405)
T ss_pred ccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence 346777777755 56777776543221 01256789999999999999999999999
Q ss_pred hCCccceeEEEEEEeccc--CCCceEEEEEEEEEc
Q 021099 204 TSIDTEFVEVLAFRQSHQ--SFFEKSDIFFLCMLR 236 (317)
Q Consensus 204 tGl~~~~~~~l~~~~~~~--~~~~~~~~~f~~~l~ 236 (317)
.|+++...+++-++.... +..+...+.|+|.+.
T Consensus 106 cgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 106 CGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred hCCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence 999998777765444332 224455778888654
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.23 E-value=0.019 Score=53.23 Aligned_cols=87 Identities=20% Similarity=0.060 Sum_probs=60.6
Q ss_pred cEEcceeecCCCCCHHHHHHHHHHHHhCCccceeE--EEEEEecccCCCceEEEEEEEEEccCC----ccccCCccceee
Q 021099 178 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE--VLAFRQSHQSFFEKSDIFFLCMLRPLS----FDIQKQESEIEA 251 (317)
Q Consensus 178 ~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~--~l~~~~~~~~~~~~~~~~f~~~l~~~~----~~~~~~~~E~~~ 251 (317)
..++..|.|+..-+..+-|.||..||.|+++...+ ....+...-+..+.....|.|.+.... +-...+++|..+
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IE 364 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIE 364 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceee
Confidence 45777888988889999999999999999975443 344444544555556666667654322 112245578888
Q ss_pred EEEEeccccccCC
Q 021099 252 AEWMPLEEYAAQP 264 (317)
Q Consensus 252 ~~Wv~~~el~~~~ 264 (317)
..=+++++++.+.
T Consensus 365 vv~lsle~a~~~~ 377 (405)
T KOG4432|consen 365 VVRLSLEDAPSLY 377 (405)
T ss_pred EEEechhhhhHHH
Confidence 8889999887754
No 100
>PRK13910 DNA glycosylase MutY; Provisional
Probab=95.96 E-value=0.032 Score=52.32 Aligned_cols=83 Identities=13% Similarity=0.257 Sum_probs=48.7
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecccCCCceEEEEE
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFF 231 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f 231 (317)
..+++++ ++++||.||. ...+ .|.|+||+. +. +.+.... .++...+..+++.....+|
T Consensus 189 ~~~~~~~-~~~~ll~kr~-~~l~-~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~ 246 (289)
T PRK13910 189 YLGVVIQ-NNQIALEKIE-QKLY-LGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLY 246 (289)
T ss_pred EEEEEEE-CCEEEEEECC-Cchh-cccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEE
Confidence 3334444 6789999885 5566 499999963 21 1111111 1333444445555555666
Q ss_pred EEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 232 LCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 232 ~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+..... ....+|++++++.+++++
T Consensus 247 ~~~~~~~----------~~~~~w~~~~~~~~~~~p 271 (289)
T PRK13910 247 LAAIKDL----------KNPIRFYSLKDLETLPIS 271 (289)
T ss_pred EEEeccC----------CccceEecHHHhhhcCCc
Confidence 5543210 123489999999999987
No 101
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.51 E-value=0.28 Score=42.93 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=36.9
Q ss_pred eeEEEEEEEe--CC-ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCc
Q 021099 149 RVGVGAFVMN--GK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 207 (317)
Q Consensus 149 ~v~v~~iv~~--~~-g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~ 207 (317)
+.+|.+|++- .+ -+|||.|... ..|.+|||.+.+||+..++..|.+.|-.|..
T Consensus 43 RrsVe~Vllvh~h~~PHvLLLq~~~------~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 43 RRSVEGVLLVHEHGHPHVLLLQIGN------TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETT------TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred ceEEEEEEEEecCCCcEEEEEeccC------ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 4556555543 22 5799999653 5899999999999999999999999999986
No 102
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=94.46 E-value=0.093 Score=49.98 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=62.6
Q ss_pred CCCCCCcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccceeEEEEEEecc
Q 021099 141 TLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSH 220 (317)
Q Consensus 141 ~~p~~~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~~~~l~~~~~~ 220 (317)
+.+.....+...+.++.+.++++++.+|...+.++ |.|+||....+. +. .+..-+.|+.. +.++.+.+.
T Consensus 227 k~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~-gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~ 295 (342)
T COG1194 227 KKPKKKLPRRFAAFLILNRDGEVLLEKRPEKGLLG-GLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHT 295 (342)
T ss_pred cCcccccchheeeEEEEccCcchhhhhCcccCcee-cccccccccccc--hh-----hhHhhhccccc---ccccceeee
Confidence 33344444566777788889999999999988875 999999876544 22 22223334433 223333343
Q ss_pred cCCCceEEEEEEEEEccCCccccCCccceeeEEEEeccccccCCCC
Q 021099 221 QSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYV 266 (317)
Q Consensus 221 ~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 266 (317)
.+++..... +.+.... .+. +..|++++++...+++
T Consensus 296 fth~~l~i~-~~a~~~~---------~~~-~~~w~~~~~~~~~~l~ 330 (342)
T COG1194 296 FTHFRLTIE-LRASASL---------VLS-DGRWYNLSDLESIGLP 330 (342)
T ss_pred eeEEEEEEE-EEeeccc---------CCC-Cceecccccccccccc
Confidence 333333333 2222111 222 6899999999988775
No 103
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=93.52 E-value=0.17 Score=43.20 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=35.5
Q ss_pred ceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhC
Q 021099 161 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 205 (317)
Q Consensus 161 g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtG 205 (317)
.+|||.|-. ...+++|||.+++||+-.+...|-+-|-+|
T Consensus 84 PHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 84 PHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 689998875 368999999999999999999999999999
No 104
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=93.51 E-value=0.53 Score=42.76 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=70.6
Q ss_pred CcceeEEEEEEEeCC---ceEEEEEecCCCCCCCCcEEc-ceeecCCCCCHHHHHHHHHHHHhCCcccee-EEE--E---
Q 021099 146 ASHRVGVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFV-EVL--A--- 215 (317)
Q Consensus 146 ~~~~v~v~~iv~~~~---g~VLLv~r~~~~~~~~g~W~~-PgG~ve~GEs~~eAAiREv~EEtGl~~~~~-~~l--~--- 215 (317)
.+..+.+.+.|.+.. -++.+.||.+..-..++.|+- .||++-.|-.+.++|+.|..||..++.... .++ |
T Consensus 130 ~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VS 209 (306)
T KOG4313|consen 130 RKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVS 209 (306)
T ss_pred EEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeE
Confidence 334455666676643 357777777655444788854 899999999999999999999999987322 222 1
Q ss_pred EE--ecccCCCceEEEEEEEEEccCCccccCCccceeeEEEEecccc
Q 021099 216 FR--QSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEY 260 (317)
Q Consensus 216 ~~--~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el 260 (317)
+. ......+....++|-..+. .+.-++..+.|.+.+..+++.+.
T Consensus 210 y~~~esr~~~~pe~qYVfDL~l~-~d~iP~~nDGEV~~F~Lltl~~~ 255 (306)
T KOG4313|consen 210 YYKFESRQGLFPETQYVFDLELP-LDFIPQNNDGEVQAFELLTLKDC 255 (306)
T ss_pred EEeeehhhccCccceEEEeccCc-hhhcCCCCCCceeeEeeecHHHH
Confidence 11 1111223333444443332 22334456688888888777654
No 105
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=91.58 E-value=1 Score=41.06 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=63.7
Q ss_pred CceEEEEEecCCCCCCCCcEEcceeec-CCCCCHHHHHHHHHHHHhCCccceeEE----EEEEecccCC-----C--ceE
Q 021099 160 KREVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETSIDTEFVEV----LAFRQSHQSF-----F--EKS 227 (317)
Q Consensus 160 ~g~VLLv~r~~~~~~~~g~W~~PgG~v-e~GEs~~eAAiREv~EEtGl~~~~~~~----l~~~~~~~~~-----~--~~~ 227 (317)
+.-+||++++-+. .+.|.||-+.. +.++++..+|.|++++-.|=.....-+ ++........ . +..
T Consensus 138 r~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk 214 (263)
T KOG4548|consen 138 RKLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSK 214 (263)
T ss_pred ceEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccce
Confidence 3458888876543 47999999999 999999999999999998866543322 1211111000 1 233
Q ss_pred EEEEEEEEccCCccccCCccceeeEEEEeccccccCCC
Q 021099 228 DIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPY 265 (317)
Q Consensus 228 ~~~f~~~l~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 265 (317)
..+|-|.+...+.. +..-..++.|++-+|+.+..-
T Consensus 215 ~ff~k~~lv~~~~~---kn~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 215 VFFFKASLVANSNQ---KNQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred eEEeeeeeccccch---hcccccceEEechHHHhhhcc
Confidence 55666665544321 122334599999999988643
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=88.61 E-value=1.1 Score=41.65 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=24.3
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEccee
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTG 184 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG 184 (317)
..+++.+.++++|++||.....+ .|.|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~~-~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGLW-GGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCchh-hccccCCCC
Confidence 33344456789999999887776 499999973
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=53.03 E-value=13 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=12.1
Q ss_pred ceeecCCCCCHHHHHHHHHHHHh
Q 021099 182 PTGVVDEGEDICVAAVREVKEET 204 (317)
Q Consensus 182 PgG~ve~GEs~~eAAiREv~EEt 204 (317)
-||...+|--+..++.||+-||+
T Consensus 14 lggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 14 LGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ---------S-HHHHHHHHHHHH
T ss_pred hcccCCCCCCCchHHHHHHHHHH
Confidence 47777888888999999999996
No 108
>PF14443 DBC1: DBC1
Probab=47.47 E-value=76 Score=26.03 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=24.8
Q ss_pred CCcEEcc--eeecCCC-CCHHHHHHHHHHHHhCCccc
Q 021099 176 TGIWKFP--TGVVDEG-EDICVAAVREVKEETSIDTE 209 (317)
Q Consensus 176 ~g~W~~P--gG~ve~G-Es~~eAAiREv~EEtGl~~~ 209 (317)
+|.|+-- ||-.+.+ ..+..+|+|=++|-|||+..
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 4677653 4444443 35789999999999999974
No 109
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=44.34 E-value=68 Score=29.62 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHH-HHHhCCccceeEEE-EEEecccCC---C
Q 021099 150 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREV-KEETSIDTEFVEVL-AFRQSHQSF---F 224 (317)
Q Consensus 150 v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv-~EEtGl~~~~~~~l-~~~~~~~~~---~ 224 (317)
++|.+.|.+++-.||-|.+.. . +|-|-.|+.....++-.|+- .+.|+.....++.+ .+.+..... .
T Consensus 26 iaVvvAv~~~~p~VLtV~q~~------a---LP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~~~~g~ 96 (322)
T COG4111 26 IAVVVAVTDGGPRVLTVRQGA------A---LPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRRNEGGM 96 (322)
T ss_pred eEEEEEEcCCCceEEEecccc------c---CCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhccccccCcCCc
Confidence 334333444556788887652 2 89999999877777777775 55699888777666 333322221 2
Q ss_pred ceEEEEEEEEEc
Q 021099 225 EKSDIFFLCMLR 236 (317)
Q Consensus 225 ~~~~~~f~~~l~ 236 (317)
....+-|+....
T Consensus 97 rvisv~YLgLtr 108 (322)
T COG4111 97 RVISVSYLGLTR 108 (322)
T ss_pred eEEEEEEeeecc
Confidence 344555666544
No 110
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=40.71 E-value=7.2 Score=37.03 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=45.3
Q ss_pred CCCCCCCcceeEEEEEEEeC--CceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCcc
Q 021099 140 NTLPANASHRVGVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 208 (317)
Q Consensus 140 ~~~p~~~~~~v~v~~iv~~~--~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~ 208 (317)
.+.|.+.......++++.+- +.-+.++.+.. -+..|.||-|.++.||-...+++|+-.||+|...
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~----~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFA----KPENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeeccccc----ccccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 44454444445555555552 33344444443 2468999999999999999999999999999875
No 111
>PF12860 PAS_7: PAS fold
Probab=32.96 E-value=23 Score=27.41 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=34.4
Q ss_pred EEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHH
Q 021099 151 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVR 198 (317)
Q Consensus 151 ~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiR 198 (317)
..|++++|.++++++..++. ...|.+|...+.+|-++.+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-----~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-----RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-----HHHhCCCHHHhcCCCCHHHHHHH
Confidence 46778999999999998874 37899999999888886665543
No 112
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=28.97 E-value=87 Score=22.83 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=24.3
Q ss_pred cCccccccceeccccCCCcEEEecCCCCCHHHHHHHHHH
Q 021099 48 SSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKS 86 (317)
Q Consensus 48 ~~~~~~~~~~~~~~d~~~gv~v~~~~~~~~~~f~~~l~~ 86 (317)
++++...+-+.-....++.|.|. |.+.++|.+.|..
T Consensus 37 ~~~a~S~~rl~I~y~~~~~i~Is---P~~~~~FI~~L~k 72 (74)
T PF06713_consen 37 SSPALSLDRLEIYYGKYKSILIS---PKDKEEFIAELQK 72 (74)
T ss_pred ccccccccEEEEEECCCCEEEEE---CCCHHHHHHHHHh
Confidence 35555555555555577777776 5689999998874
No 113
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=28.62 E-value=24 Score=30.93 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=41.9
Q ss_pred ceEEEEeecCCCCCCCCCC---CcceeEEEEEEEeCCceEEEEEecCCCCCCCCcEEcceeec---CCCCCHHHHHH
Q 021099 127 NYLMLVYWIPGGANTLPAN---ASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVV---DEGEDICVAAV 197 (317)
Q Consensus 127 ~~~~l~~wl~~~~~~~p~~---~~~~v~v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~v---e~GEs~~eAAi 197 (317)
+.+|+..|+.+.+..+... ..-++|...+|+-.+|++.+..|..... ..-.-.||||.- -.|+++.+++.
T Consensus 4 ~~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~~-~~f~s~lP~g~~~~~~~g~tILDci~ 79 (186)
T cd09232 4 NQLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKNGRTL-HRFSSALPGGSRKTSNSGYTILDCIY 79 (186)
T ss_pred cceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCCCCEE-EecccCCCCCCcCCCCCCCEEEEEec
Confidence 3457777776665554332 2234566666666588888887764432 223557899874 35677766654
No 114
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=20.85 E-value=26 Score=30.16 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=21.6
Q ss_pred EEEEeecCCC-CCCCCCCCcceeEEEEEEEeCCceEEEEEec
Q 021099 129 LMLVYWIPGG-ANTLPANASHRVGVGAFVMNGKREVLVVQEN 169 (317)
Q Consensus 129 ~~l~~wl~~~-~~~~p~~~~~~v~v~~iv~~~~g~VLLv~r~ 169 (317)
.+|.+|-++. ...+|.........-++|+|++|++|..+|.
T Consensus 51 ~sLAqW~dnkL~i~~P~~~~ln~ptL~~IYD~~G~lLW~qr~ 92 (180)
T PF08918_consen 51 YSLAQWEDNKLTIEVPPNLDLNSPTLVLIYDENGKLLWRQRD 92 (180)
T ss_dssp HHHEEEETTCEEE---TTHHTT-SEEEEEEETTS-EEEESS-
T ss_pred hhhhheeCCeeEEeCCCccCCCCCeEEEEEcCCCcEEEecCc
Confidence 3455554432 2344544333333456899999999999885
No 115
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.62 E-value=1.8e+02 Score=27.55 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=35.3
Q ss_pred EEEEEEeCCceEEEEEecCCCCCCCCcEEcceeecCCCCCHHHHHHHHHHHHhCCccce-eEEE
Q 021099 152 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF-VEVL 214 (317)
Q Consensus 152 v~~iv~~~~g~VLLv~r~~~~~~~~g~W~~PgG~ve~GEs~~eAAiREv~EEtGl~~~~-~~~l 214 (317)
..++|+++++.+|-.--.. +.++|..|- +.=-+-.+.++||++|+.|++.+. ++-+
T Consensus 15 s~~Vivd~~~~~~~~a~~~----~Tnh~~ig~---~~~~~rie~~i~~A~~k~g~d~~~~lr~l 71 (336)
T KOG1794|consen 15 SRLVIVDEDGTILGRAVGG----GTNHWLIGS---TTCASRIEDMIREAKEKAGWDKKGPLRSL 71 (336)
T ss_pred eEEEEECCCCCEeeEeecc----ccccccCCc---hHHHHHHHHHHHHHHhhcCCCccCcccee
Confidence 3445667777766544432 457888771 111134677899999999998765 4444
Done!