Query 021100
Match_columns 317
No_of_seqs 152 out of 301
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 12:44:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021100.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021100hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a1ia3 g.37.1.1 (A:160-187) Z 36.3 0.95 6.9E-05 28.3 -2.7 14 67-80 15-28 (28)
2 d2hzaa1 a.43.1.3 (A:1-48) Nick 17.2 52 0.0038 21.6 3.1 34 84-117 6-39 (48)
3 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 14.4 59 0.0043 25.7 3.4 29 97-125 296-334 (346)
4 d1fsfa_ c.124.1.1 (A:) Glucosa 14.0 23 0.0017 28.6 0.7 16 259-274 135-150 (266)
5 d1wgna_ a.5.2.1 (A:) Ubiquitin 13.3 21 0.0016 24.4 0.2 14 106-119 47-60 (63)
6 d2bj7a1 a.43.1.3 (A:1-50) Nick 12.6 70 0.0051 21.2 2.8 34 84-117 8-41 (50)
7 d1zata1 b.160.1.1 (A:339-466) 12.2 45 0.0033 22.9 1.8 17 82-98 103-119 (128)
8 d2j5ya1 a.8.1.2 (A:1-53) PAB { 11.5 46 0.0034 22.8 1.5 19 111-129 4-23 (53)
9 d1qpza1 a.35.1.5 (A:2-58) Puri 11.4 83 0.006 20.9 2.9 22 85-106 26-47 (57)
10 d1y7ma1 b.160.1.1 (A:49-164) H 11.0 57 0.0041 22.7 2.0 17 83-99 91-107 (116)
No 1
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.28 E-value=0.95 Score=28.28 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=10.6
Q ss_pred CCCCCCccccccCC
Q 021100 67 RSSNKDRHTKVEGR 80 (317)
Q Consensus 67 rs~~KDRHSKV~~R 80 (317)
|+-.+.||+|||.|
T Consensus 15 rsderkRH~kiH~k 28 (28)
T d1a1ia3 15 RSDERKRHTKIHLR 28 (28)
T ss_dssp SHHHHHHHHGGGCC
T ss_pred cchhhhhhhhhccC
Confidence 34457899999975
No 2
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.19 E-value=52 Score=21.65 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.2
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 021100 84 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 117 (317)
Q Consensus 84 vRLs~~~A~rfF~Lqd~LGfdk~skTIeWLL~qa 117 (317)
|.||-+...+|=.+-.+.||..-||+|.=|++..
T Consensus 6 Vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 39 (48)
T d2hzaa1 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (48)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999999988764
No 3
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=14.44 E-value=59 Score=25.72 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=18.7
Q ss_pred hhhhhCCCCC-c-------hHHHHHHHhch--HHHHHHh
Q 021100 97 LTRELGHKSD-G-------ETIQWLLQQAE--PSIIAAT 125 (317)
Q Consensus 97 Lqd~LGfdk~-s-------kTIeWLL~qak--~AI~~lt 125 (317)
++++|||+.- + +||+|++++.. .+.++++
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~~~~k~~~ 334 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAEKEAV 334 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3467888732 2 79999998654 3455554
No 4
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]}
Probab=14.01 E-value=23 Score=28.58 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.3
Q ss_pred ccccccCCccceecch
Q 021100 259 ELGLSQDGHIGVLNPQ 274 (317)
Q Consensus 259 elglsqdgh~gvln~q 274 (317)
=||+-.|||++-|.|-
T Consensus 135 lLGiG~DGH~AslfP~ 150 (266)
T d1fsfa_ 135 MGGVGNDGHIAFNEPA 150 (266)
T ss_dssp EECCCTTSCCTTCCTT
T ss_pred EeccCCCceeeecccc
Confidence 4799999999999996
No 5
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.29 E-value=21 Score=24.39 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=10.9
Q ss_pred CchHHHHHHHhchH
Q 021100 106 DGETIQWLLQQAEP 119 (317)
Q Consensus 106 ~skTIeWLL~qak~ 119 (317)
-..+|+|||.++.|
T Consensus 47 ~e~A~~~Lls~~~p 60 (63)
T d1wgna_ 47 IEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCC
Confidence 56789999988654
No 6
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.58 E-value=70 Score=21.19 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.8
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 021100 84 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 117 (317)
Q Consensus 84 vRLs~~~A~rfF~Lqd~LGfdk~skTIeWLL~qa 117 (317)
|.||-+...+|=.+-.+.||..-||+|.=|++..
T Consensus 8 vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 41 (50)
T d2bj7a1 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDF 41 (50)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6788999999999999999999999999888754
No 7
>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal, catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=12.21 E-value=45 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.7
Q ss_pred ceeecCHHHHHHHHhhh
Q 021100 82 RRIRMPALCAARIFQLT 98 (317)
Q Consensus 82 RRvRLs~~~A~rfF~Lq 98 (317)
-+|||+.+-|.+||++-
T Consensus 103 GCIRl~~~da~~ly~~v 119 (128)
T d1zata1 103 GCINTPPSVMKELFGMV 119 (128)
T ss_dssp SSEEECHHHHHHHHHHC
T ss_pred cccCcCHHHHHHHHhcC
Confidence 46999999999999864
No 8
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=11.52 E-value=46 Score=22.79 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=14.7
Q ss_pred HHHHHhch-HHHHHHhcCCC
Q 021100 111 QWLLQQAE-PSIIAATGTGT 129 (317)
Q Consensus 111 eWLL~qak-~AI~~lt~tgt 129 (317)
+|||.+|| .||.++...|.
T Consensus 4 ~~~Lk~AKe~AI~eLK~~GI 23 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKKAGI 23 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 79999996 57788876654
No 9
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.42 E-value=83 Score=20.86 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=19.9
Q ss_pred ecCHHHHHHHHhhhhhhCCCCC
Q 021100 85 RMPALCAARIFQLTRELGHKSD 106 (317)
Q Consensus 85 RLs~~~A~rfF~Lqd~LGfdk~ 106 (317)
+++.++..++..+-++|||..+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHHHHHHCCCCC
Confidence 5899999999999999999754
No 10
>d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.00 E-value=57 Score=22.72 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=15.0
Q ss_pred eeecCHHHHHHHHhhhh
Q 021100 83 RIRMPALCAARIFQLTR 99 (317)
Q Consensus 83 RvRLs~~~A~rfF~Lqd 99 (317)
+|||+.+-|++||+..+
T Consensus 91 CIrl~~~da~~ly~~~~ 107 (116)
T d1y7ma1 91 CIRMHNKDVIELASIVP 107 (116)
T ss_dssp CEECCHHHHHHHHHHCC
T ss_pred eeccCHHHHHHHHhcCC
Confidence 79999999999998754
Done!