BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021101
         (317 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
          Length = 35213

 Score = 34.7 bits (78), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 46    AKKDSNAVKEALDQLSEVGWAKRWSSQPYVSRRTTTLRELTLLGIKNAENLAI 98
             A KD+ A K +  + SEV   K+ S+Q  +S++  T  E+ +  +K+ E LAI
Sbjct: 34732 AVKDTEAQKVSTQKTSEVTSQKKASAQEEISQKALTSEEIKMSEVKSHETLAI 34784


>sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1
          Length = 549

 Score = 33.9 bits (76), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 132 FTPYLIGSISLV--------VLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLL 183
           F P L G +S+V        V+ + S  P   Q   QGF     +  ER+AR E   + +
Sbjct: 463 FRPELKGGVSIVRELHVYGSVVPISSRDPSKFQH--QGFGMLLMEEAERIARDEHGSWKI 520

Query: 184 AYLLGLPILGYSLDIGKE 201
           A + G+    Y   IG E
Sbjct: 521 AVISGVGTRNYYRKIGYE 538


>sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1
          Length = 546

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 132 FTPYLIGSISLV--------VLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLL 183
           F P L G +S+V        V+ V S  P   Q   QGF     +  ER+A+ E   + +
Sbjct: 460 FRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQH--QGFGMLLMEEAERIAKEEHGSWKI 517

Query: 184 AYLLGLPILGYSLDIGKE 201
           A + G+    Y   IG E
Sbjct: 518 AVISGVGTRNYYRKIGYE 535


>sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3
          Length = 548

 Score = 32.3 bits (72), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 132 FTPYLIGSISLV--------VLAVGSTSPGLLQAAIQGFSSFFPDYQERVARHEAAHFLL 183
           F P L G +S+V        V+ V S  P   Q   QGF     +  ER+AR E     L
Sbjct: 462 FRPELKGGVSIVRELHVYGSVVPVSSRDPSKFQH--QGFGMMLMEEAERIARDEHGSSKL 519

Query: 184 AYLLGLPILGYSLDIGKE 201
           A + G+    Y   +G E
Sbjct: 520 AVISGVGTRNYYRKMGYE 537


>sp|A8N5E6|PRM1_COPC7 Plasma membrane fusion protein PRM1 OS=Coprinopsis cinerea (strain
           Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=PRM1
           PE=3 SV=1
          Length = 1062

 Score = 31.6 bits (70), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 68  RWSSQPYVSRRTTTLRELTLLGIKNAENLAIPSV 101
           RWS+ P  ++ +  L++LTLL  K++ N  +P+V
Sbjct: 842 RWSTSPGPTKTSWNLKKLTLLSPKSSNNKKLPAV 875


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,046,661
Number of Sequences: 539616
Number of extensions: 4147308
Number of successful extensions: 12027
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12023
Number of HSP's gapped (non-prelim): 13
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)