Query 021103
Match_columns 317
No_of_seqs 470 out of 4006
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 2.3E-63 5E-68 436.6 30.9 316 1-316 2-317 (365)
2 KOG1486 GTP-binding protein DR 100.0 2.4E-56 5.1E-61 378.7 29.9 316 1-316 1-316 (364)
3 KOG1487 GTP-binding protein DR 100.0 1.4E-43 2.9E-48 302.1 22.2 304 3-312 2-305 (358)
4 cd01896 DRG The developmentall 100.0 6.4E-36 1.4E-40 263.1 26.5 232 64-295 2-233 (233)
5 COG1126 GlnQ ABC-type polar am 100.0 2.8E-32 6.2E-37 228.7 7.3 176 53-251 19-215 (240)
6 COG1135 AbcC ABC-type metal io 100.0 1.8E-30 3.9E-35 228.5 6.7 182 53-256 23-226 (339)
7 COG1136 SalX ABC-type antimicr 100.0 4.2E-31 9.2E-36 227.1 2.5 169 53-232 22-212 (226)
8 COG1116 TauB ABC-type nitrate/ 100.0 8.1E-30 1.7E-34 219.6 8.8 154 53-226 20-194 (248)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.6E-28 3.5E-33 214.2 11.1 171 53-248 21-215 (254)
10 COG1125 OpuBA ABC-type proline 100.0 3.4E-29 7.4E-34 214.6 5.7 175 53-252 18-216 (309)
11 COG3842 PotA ABC-type spermidi 100.0 4.1E-29 9E-34 228.0 4.7 183 53-261 22-226 (352)
12 COG3839 MalK ABC-type sugar tr 100.0 1.2E-28 2.5E-33 224.0 7.1 183 53-261 20-223 (338)
13 COG1120 FepC ABC-type cobalami 99.9 2.1E-28 4.5E-33 214.4 8.2 175 53-251 19-218 (258)
14 COG0488 Uup ATPase components 99.9 4.7E-28 1E-32 233.7 11.4 197 3-225 256-498 (530)
15 COG2884 FtsE Predicted ATPase 99.9 1.6E-28 3.5E-33 201.9 6.9 162 53-226 19-200 (223)
16 COG1118 CysA ABC-type sulfate/ 99.9 5.2E-28 1.1E-32 212.5 8.8 190 52-265 18-231 (345)
17 COG4181 Predicted ABC-type tra 99.9 7.1E-28 1.5E-32 194.9 6.0 169 53-232 27-216 (228)
18 COG3840 ThiQ ABC-type thiamine 99.9 2.6E-27 5.7E-32 193.5 9.0 160 53-229 16-197 (231)
19 PRK09602 translation-associate 99.9 3.5E-26 7.6E-31 214.7 16.5 248 64-315 3-351 (396)
20 COG1124 DppF ABC-type dipeptid 99.9 4.4E-27 9.5E-32 201.1 6.1 175 53-251 24-221 (252)
21 COG3638 ABC-type phosphate/pho 99.9 2.3E-27 5E-32 201.6 3.9 171 52-234 20-220 (258)
22 COG1127 Ttg2A ABC-type transpo 99.9 2.8E-27 6.1E-32 201.6 4.2 168 53-232 25-216 (263)
23 COG1131 CcmA ABC-type multidru 99.9 6.9E-27 1.5E-31 212.1 4.9 181 53-259 22-224 (293)
24 COG1122 CbiO ABC-type cobalt t 99.9 9.4E-26 2E-30 197.2 11.3 175 53-251 21-218 (235)
25 COG4175 ProV ABC-type proline/ 99.9 3.7E-26 7.9E-31 201.4 7.5 163 52-225 44-227 (386)
26 COG0411 LivG ABC-type branched 99.9 5.4E-27 1.2E-31 200.7 1.3 187 53-263 21-241 (250)
27 COG4619 ABC-type uncharacteriz 99.9 3E-26 6.6E-31 184.9 5.5 158 53-225 20-196 (223)
28 COG4555 NatA ABC-type Na+ tran 99.9 1.5E-26 3.3E-31 192.0 3.4 179 53-257 19-218 (245)
29 TIGR02314 ABC_MetN D-methionin 99.9 3E-26 6.4E-31 211.9 5.1 167 53-231 22-210 (343)
30 PRK13537 nodulation ABC transp 99.9 4.3E-26 9.4E-31 208.5 6.1 163 53-231 24-207 (306)
31 TIGR01188 drrA daunorubicin re 99.9 4.3E-26 9.3E-31 208.5 5.8 163 53-231 10-193 (302)
32 PRK11650 ugpC glycerol-3-phosp 99.9 4.3E-26 9.4E-31 212.2 5.8 172 53-251 21-214 (356)
33 TIGR00960 3a0501s02 Type II (G 99.9 2E-26 4.3E-31 200.8 3.2 166 53-230 20-206 (216)
34 PRK13536 nodulation factor exp 99.9 7.1E-26 1.5E-30 209.5 6.1 174 53-252 58-252 (340)
35 TIGR01186 proV glycine betaine 99.9 4.4E-26 9.4E-31 211.9 4.6 177 53-250 10-208 (363)
36 cd03226 ABC_cobalt_CbiO_domain 99.9 1.1E-25 2.4E-30 194.6 6.5 158 53-230 17-194 (205)
37 cd03261 ABC_Org_Solvent_Resist 99.9 7.6E-26 1.6E-30 199.7 5.3 166 53-230 17-205 (235)
38 COG1117 PstB ABC-type phosphat 99.9 6.3E-26 1.4E-30 189.9 4.3 169 53-231 24-217 (253)
39 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.3E-26 1.4E-30 197.9 4.4 167 53-230 21-208 (218)
40 cd03225 ABC_cobalt_CbiO_domain 99.9 6.5E-26 1.4E-30 196.8 4.4 163 53-230 18-202 (211)
41 PRK11432 fbpC ferric transport 99.9 4.9E-26 1.1E-30 211.3 3.6 172 53-251 23-216 (351)
42 PF02421 FeoB_N: Ferrous iron 99.9 2.6E-24 5.5E-29 176.2 13.2 148 64-283 2-156 (156)
43 TIGR02673 FtsE cell division A 99.9 6E-26 1.3E-30 197.5 3.7 166 53-230 19-205 (214)
44 TIGR03265 PhnT2 putative 2-ami 99.9 1.3E-25 2.9E-30 208.7 6.1 172 53-251 21-214 (353)
45 TIGR01288 nodI ATP-binding ABC 99.9 2.5E-25 5.4E-30 203.5 7.7 163 53-231 21-204 (303)
46 COG1137 YhbG ABC-type (unclass 99.9 2.9E-26 6.2E-31 190.1 1.1 179 53-255 21-222 (243)
47 PTZ00258 GTP-binding protein; 99.9 3.8E-24 8.3E-29 199.0 15.4 240 62-315 21-326 (390)
48 cd03259 ABC_Carb_Solutes_like 99.9 1.5E-25 3.1E-30 194.9 5.6 161 53-230 17-199 (213)
49 PRK10636 putative ABC transpor 99.9 1.2E-24 2.7E-29 217.1 12.9 153 53-231 329-496 (638)
50 COG4152 ABC-type uncharacteriz 99.9 2.9E-25 6.3E-30 189.3 7.0 161 53-234 19-202 (300)
51 PRK10851 sulfate/thiosulfate t 99.9 2.2E-25 4.7E-30 207.3 6.7 172 53-251 19-216 (353)
52 cd03235 ABC_Metallic_Cations A 99.9 9.6E-26 2.1E-30 196.1 4.1 162 53-230 16-200 (213)
53 TIGR03258 PhnT 2-aminoethylpho 99.9 2.1E-25 4.6E-30 207.7 6.5 173 53-252 22-219 (362)
54 COG4559 ABC-type hemin transpo 99.9 3.6E-24 7.9E-29 179.2 12.7 168 53-251 18-220 (259)
55 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.8E-25 6.1E-30 199.8 6.4 167 53-230 41-229 (269)
56 cd03219 ABC_Mj1267_LivG_branch 99.9 1.5E-25 3.3E-30 197.8 4.4 174 53-250 17-221 (236)
57 TIGR02211 LolD_lipo_ex lipopro 99.9 1.2E-25 2.7E-30 196.4 3.6 163 53-226 22-205 (221)
58 PRK10070 glycine betaine trans 99.9 1.8E-25 3.8E-30 210.2 4.7 169 52-231 44-234 (400)
59 TIGR02142 modC_ABC molybdenum 99.9 4.4E-25 9.5E-30 205.8 7.0 165 54-230 15-200 (354)
60 PRK11000 maltose/maltodextrin 99.9 3.7E-25 8E-30 207.2 6.5 171 53-250 20-212 (369)
61 TIGR03522 GldA_ABC_ATP gliding 99.9 3.4E-25 7.5E-30 202.3 6.1 174 53-252 19-212 (301)
62 PRK11144 modC molybdate transp 99.9 3.7E-25 8E-30 206.1 6.4 174 53-251 15-208 (352)
63 TIGR03608 L_ocin_972_ABC putat 99.9 3.1E-25 6.7E-30 191.8 5.5 166 53-229 15-200 (206)
64 PRK11153 metN DL-methionine tr 99.9 2.1E-25 4.6E-30 207.0 4.7 167 53-231 22-210 (343)
65 PRK09452 potA putrescine/sperm 99.9 3.1E-25 6.7E-30 207.4 5.4 172 53-251 31-224 (375)
66 cd03265 ABC_DrrA DrrA is the A 99.9 3.4E-25 7.4E-30 193.6 5.3 162 53-230 17-200 (220)
67 cd03262 ABC_HisP_GlnQ_permease 99.9 5.5E-25 1.2E-29 191.2 6.6 165 53-230 17-203 (213)
68 PRK13641 cbiO cobalt transport 99.9 3.5E-25 7.6E-30 201.0 5.3 169 52-231 23-214 (287)
69 cd03296 ABC_CysA_sulfate_impor 99.9 5.4E-25 1.2E-29 194.7 6.4 171 53-250 19-215 (239)
70 PRK11629 lolD lipoprotein tran 99.9 2.6E-25 5.6E-30 196.0 4.3 163 53-226 26-209 (233)
71 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.2E-25 9.1E-30 193.0 5.4 160 53-230 21-200 (220)
72 PRK10584 putative ABC transpor 99.9 2.5E-25 5.4E-30 195.5 3.8 165 52-227 26-211 (228)
73 COG4604 CeuD ABC-type enteroch 99.9 8.7E-25 1.9E-29 180.9 6.7 175 53-251 18-215 (252)
74 COG2262 HflX GTPases [General 99.9 4.9E-23 1.1E-27 188.0 18.7 162 62-289 192-357 (411)
75 COG4598 HisP ABC-type histidin 99.9 3.3E-24 7.2E-29 175.0 9.9 188 53-260 23-240 (256)
76 cd03292 ABC_FtsE_transporter F 99.9 2.4E-25 5.1E-30 193.7 3.4 161 53-225 18-198 (214)
77 TIGR02315 ABC_phnC phosphonate 99.9 4.5E-25 9.7E-30 195.7 5.2 166 53-230 19-214 (243)
78 cd03301 ABC_MalK_N The N-termi 99.9 7E-25 1.5E-29 190.6 6.2 161 53-230 17-199 (213)
79 PRK10908 cell division protein 99.9 3.2E-25 7E-30 194.0 4.0 161 53-225 19-199 (222)
80 PRK09536 btuD corrinoid ABC tr 99.9 5.5E-25 1.2E-29 207.0 5.5 173 53-250 20-217 (402)
81 PRK11264 putative amino-acid A 99.9 1.2E-24 2.7E-29 193.7 7.5 178 53-251 20-223 (250)
82 TIGR01166 cbiO cobalt transpor 99.9 7.4E-25 1.6E-29 187.2 5.6 159 53-224 9-188 (190)
83 TIGR01184 ntrCD nitrate transp 99.9 9.1E-25 2E-29 192.2 6.2 171 53-251 2-194 (230)
84 cd03256 ABC_PhnC_transporter A 99.9 7.2E-25 1.6E-29 194.1 5.5 162 53-226 18-208 (241)
85 PRK11607 potG putrescine trans 99.9 8E-25 1.7E-29 204.9 6.0 172 53-251 36-229 (377)
86 PRK13643 cbiO cobalt transport 99.9 7.3E-25 1.6E-29 199.0 5.5 178 52-251 22-223 (288)
87 cd03218 ABC_YhbG The ABC trans 99.9 7.1E-25 1.5E-29 193.1 5.2 164 53-230 17-201 (232)
88 PRK13651 cobalt transporter AT 99.9 7.8E-25 1.7E-29 200.0 5.4 178 53-251 24-244 (305)
89 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.5E-24 3.3E-29 188.3 6.8 161 53-230 15-197 (211)
90 cd03266 ABC_NatA_sodium_export 99.9 5E-25 1.1E-29 192.2 3.8 163 52-230 21-204 (218)
91 cd03263 ABC_subfamily_A The AB 99.9 8.6E-25 1.9E-29 191.0 5.3 162 53-230 19-200 (220)
92 PRK11248 tauB taurine transpor 99.9 5.7E-25 1.2E-29 196.3 4.2 160 53-230 18-197 (255)
93 PRK11831 putative ABC transpor 99.9 1E-24 2.3E-29 196.2 5.8 166 53-230 24-212 (269)
94 PRK13650 cbiO cobalt transport 99.9 9.7E-25 2.1E-29 197.3 5.6 174 53-251 24-219 (279)
95 cd03258 ABC_MetN_methionine_tr 99.9 9E-25 1.9E-29 192.5 5.1 166 53-230 22-209 (233)
96 PRK11147 ABC transporter ATPas 99.9 4.8E-24 1E-28 213.1 10.9 153 53-231 336-506 (635)
97 cd03224 ABC_TM1139_LivF_branch 99.9 6.7E-25 1.4E-29 191.9 4.2 164 53-230 17-200 (222)
98 cd03269 ABC_putative_ATPase Th 99.9 6.7E-25 1.5E-29 190.3 4.2 160 53-230 17-196 (210)
99 cd03297 ABC_ModC_molybdenum_tr 99.9 1.2E-24 2.7E-29 189.2 5.7 164 54-230 16-200 (214)
100 TIGR03415 ABC_choXWV_ATP choli 99.9 6.1E-25 1.3E-29 205.3 3.9 168 53-231 41-234 (382)
101 PRK11247 ssuB aliphatic sulfon 99.9 9.8E-25 2.1E-29 194.8 4.7 156 53-230 29-202 (257)
102 cd03264 ABC_drug_resistance_li 99.9 8.2E-25 1.8E-29 189.9 3.9 156 53-225 17-191 (211)
103 PRK15079 oligopeptide ABC tran 99.9 9.5E-25 2.1E-29 201.4 4.6 177 53-251 38-241 (331)
104 PRK13647 cbiO cobalt transport 99.9 1.5E-24 3.4E-29 195.5 5.7 175 52-251 21-217 (274)
105 COG0444 DppD ABC-type dipeptid 99.9 1.2E-24 2.5E-29 194.0 4.7 193 53-262 22-244 (316)
106 cd03268 ABC_BcrA_bacitracin_re 99.9 4.9E-25 1.1E-29 190.9 2.2 159 53-230 17-194 (208)
107 PRK13644 cbiO cobalt transport 99.9 1.7E-24 3.7E-29 195.2 5.7 176 52-251 18-214 (274)
108 PRK13634 cbiO cobalt transport 99.9 1.5E-24 3.2E-29 197.2 5.2 166 53-230 24-214 (290)
109 PRK13649 cbiO cobalt transport 99.9 1.9E-24 4.2E-29 195.6 5.8 167 53-230 24-213 (280)
110 PRK10895 lipopolysaccharide AB 99.9 1.6E-24 3.4E-29 192.0 4.9 164 53-230 20-205 (241)
111 cd03231 ABC_CcmA_heme_exporter 99.9 2.3E-24 4.9E-29 185.8 5.6 152 53-224 17-186 (201)
112 COG1159 Era GTPase [General fu 99.9 7.7E-23 1.7E-27 180.1 15.2 156 63-289 7-173 (298)
113 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.1E-24 6.7E-29 189.5 6.3 161 53-229 18-199 (236)
114 PRK11022 dppD dipeptide transp 99.9 1.7E-24 3.6E-29 199.6 4.7 183 53-252 24-234 (326)
115 PRK09473 oppD oligopeptide tra 99.9 1.6E-24 3.6E-29 199.9 4.5 183 53-253 33-243 (330)
116 PRK09493 glnQ glutamine ABC tr 99.9 3.1E-24 6.7E-29 190.0 6.0 165 53-230 18-204 (240)
117 PRK13646 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 195.8 4.9 178 52-251 23-225 (286)
118 PRK10619 histidine/lysine/argi 99.9 3.8E-24 8.3E-29 191.3 6.5 178 53-251 22-231 (257)
119 TIGR03411 urea_trans_UrtD urea 99.9 1.6E-24 3.5E-29 192.0 4.0 164 53-230 19-210 (242)
120 COG4608 AppF ABC-type oligopep 99.9 1.6E-23 3.6E-28 182.8 10.2 153 53-261 30-199 (268)
121 PRK11308 dppF dipeptide transp 99.9 2.2E-24 4.7E-29 198.8 5.0 178 53-252 32-235 (327)
122 PRK13637 cbiO cobalt transport 99.9 3.1E-24 6.7E-29 194.8 5.9 176 53-251 24-224 (287)
123 COG3845 ABC-type uncharacteriz 99.9 4.4E-24 9.6E-29 198.4 6.8 168 52-233 20-211 (501)
124 PRK13652 cbiO cobalt transport 99.9 2.5E-24 5.4E-29 194.5 5.1 165 52-231 20-207 (277)
125 PRK11614 livF leucine/isoleuci 99.9 1.6E-24 3.4E-29 191.5 3.7 174 53-250 22-215 (237)
126 PRK15093 antimicrobial peptide 99.9 1.7E-24 3.7E-29 200.0 4.0 183 53-252 24-239 (330)
127 PRK13540 cytochrome c biogenes 99.9 2.2E-24 4.8E-29 185.7 4.4 160 53-231 18-195 (200)
128 PRK13538 cytochrome c biogenes 99.9 1.8E-24 4E-29 186.8 3.9 158 53-227 18-193 (204)
129 PRK13635 cbiO cobalt transport 99.9 2.9E-24 6.3E-29 194.2 5.3 160 53-227 24-205 (279)
130 KOG1489 Predicted GTP-binding 99.9 8E-23 1.7E-27 180.1 14.1 167 54-286 188-365 (366)
131 PRK11300 livG leucine/isoleuci 99.9 2.8E-24 6E-29 191.9 4.7 164 53-230 22-222 (255)
132 PRK13631 cbiO cobalt transport 99.9 2.9E-24 6.2E-29 197.4 4.8 178 52-251 42-255 (320)
133 PRK13638 cbiO cobalt transport 99.9 1.4E-23 2.9E-28 189.2 8.9 166 52-230 17-204 (271)
134 PRK10771 thiQ thiamine transpo 99.9 5.6E-24 1.2E-28 187.4 6.3 161 53-230 16-198 (232)
135 TIGR02769 nickel_nikE nickel i 99.9 4.5E-24 9.9E-29 191.6 5.7 177 53-251 28-230 (265)
136 cd03260 ABC_PstB_phosphate_tra 99.9 3.9E-24 8.4E-29 187.8 5.2 165 53-230 17-208 (227)
137 PRK11124 artP arginine transpo 99.9 3.7E-24 8E-29 189.7 4.8 167 53-230 19-209 (242)
138 PRK13543 cytochrome c biogenes 99.9 3.6E-24 7.7E-29 186.4 4.5 159 53-230 28-205 (214)
139 TIGR01189 ccmA heme ABC export 99.9 4.7E-24 1E-28 183.4 5.2 153 53-223 17-187 (198)
140 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.4E-24 9.5E-29 189.3 5.0 163 53-230 18-204 (242)
141 TIGR00972 3a0107s01c2 phosphat 99.9 7.8E-24 1.7E-28 188.2 6.6 165 53-230 18-211 (247)
142 cd01899 Ygr210 Ygr210 subfamil 99.9 7.1E-23 1.5E-27 187.1 12.9 221 65-289 1-270 (318)
143 PRK10575 iron-hydroxamate tran 99.9 5.1E-24 1.1E-28 191.3 5.1 163 53-230 28-216 (265)
144 PRK10762 D-ribose transporter 99.9 6.2E-24 1.3E-28 207.2 6.1 166 53-232 21-211 (501)
145 PRK14250 phosphate ABC transpo 99.9 1E-23 2.2E-28 186.8 6.8 161 53-230 20-200 (241)
146 PRK10247 putative ABC transpor 99.9 4.4E-24 9.5E-29 187.2 4.4 161 52-227 23-202 (225)
147 COG4988 CydD ABC-type transpor 99.9 1.5E-23 3.2E-28 199.1 8.3 180 53-261 338-543 (559)
148 PRK13648 cbiO cobalt transport 99.9 6.8E-24 1.5E-28 190.9 5.7 175 52-251 25-221 (269)
149 PRK13633 cobalt transporter AT 99.9 1.3E-23 2.8E-28 190.1 7.4 175 53-251 27-223 (280)
150 TIGR03873 F420-0_ABC_ATP propo 99.9 2.8E-23 6E-28 185.7 9.4 163 53-230 18-205 (256)
151 cd03214 ABC_Iron-Siderophores_ 99.9 1E-23 2.3E-28 178.6 6.3 134 53-230 16-166 (180)
152 COG1123 ATPase components of v 99.9 1.2E-23 2.5E-28 200.3 7.3 186 52-260 307-518 (539)
153 TIGR01277 thiQ thiamine ABC tr 99.9 7.8E-24 1.7E-28 184.1 5.6 161 53-230 15-197 (213)
154 cd03257 ABC_NikE_OppD_transpor 99.9 5.6E-24 1.2E-28 186.7 4.6 161 53-225 22-208 (228)
155 PRK13632 cbiO cobalt transport 99.9 6.1E-24 1.3E-28 191.4 4.7 163 52-229 25-209 (271)
156 cd03267 ABC_NatA_like Similar 99.9 5.8E-24 1.3E-28 187.8 4.4 162 53-230 38-222 (236)
157 TIGR03005 ectoine_ehuA ectoine 99.9 1E-23 2.2E-28 188.1 5.8 162 53-225 17-209 (252)
158 PRK13639 cbiO cobalt transport 99.9 1.1E-23 2.3E-28 190.2 6.1 177 52-251 18-216 (275)
159 PRK15439 autoinducer 2 ABC tra 99.9 7E-24 1.5E-28 207.1 5.1 163 53-231 28-209 (510)
160 PRK15112 antimicrobial peptide 99.9 1.3E-23 2.7E-28 189.0 6.3 158 53-225 30-212 (267)
161 PRK14242 phosphate transporter 99.9 1.3E-23 2.8E-28 187.4 6.3 170 53-230 23-216 (253)
162 PRK15056 manganese/iron transp 99.9 2.2E-23 4.7E-28 187.9 7.8 162 53-230 24-210 (272)
163 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5.5E-23 1.2E-27 180.1 10.2 155 53-230 39-210 (224)
164 COG1123 ATPase components of v 99.9 6.2E-24 1.3E-28 202.2 4.4 191 53-260 26-243 (539)
165 PRK11231 fecE iron-dicitrate t 99.9 5.6E-24 1.2E-28 190.0 3.8 164 53-231 19-207 (255)
166 PRK14273 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 187.2 6.4 181 53-251 24-228 (254)
167 PRK14247 phosphate ABC transpo 99.9 1.3E-23 2.9E-28 187.0 5.9 168 53-230 20-213 (250)
168 TIGR02324 CP_lyasePhnL phospho 99.9 5.7E-24 1.2E-28 186.3 3.2 168 53-231 25-218 (224)
169 COG0486 ThdF Predicted GTPase 99.9 6.1E-22 1.3E-26 183.9 16.8 158 61-290 216-378 (454)
170 PRK13636 cbiO cobalt transport 99.9 9.9E-24 2.1E-28 191.1 4.8 176 53-251 23-221 (283)
171 PRK13548 hmuV hemin importer A 99.9 1.6E-23 3.4E-28 187.4 6.1 163 53-230 19-209 (258)
172 cd03245 ABCC_bacteriocin_expor 99.9 6.6E-24 1.4E-28 185.4 3.4 159 52-229 20-205 (220)
173 PRK13640 cbiO cobalt transport 99.9 1.3E-23 2.8E-28 190.3 5.5 163 52-229 23-210 (282)
174 COG1160 Predicted GTPases [Gen 99.9 2.6E-22 5.7E-27 185.8 14.1 155 63-288 4-165 (444)
175 PRK09700 D-allose transporter 99.9 1.5E-23 3.2E-28 205.0 6.1 164 53-230 280-477 (510)
176 PRK10253 iron-enterobactin tra 99.9 7.6E-24 1.7E-28 190.2 3.8 163 53-230 24-212 (265)
177 PRK09700 D-allose transporter 99.9 7.6E-24 1.7E-28 207.0 4.0 165 53-231 22-214 (510)
178 TIGR03156 GTP_HflX GTP-binding 99.9 2E-21 4.3E-26 180.4 19.8 159 62-286 189-350 (351)
179 TIGR01978 sufC FeS assembly AT 99.9 1E-23 2.2E-28 187.0 4.2 160 53-226 17-207 (243)
180 PRK11288 araG L-arabinose tran 99.9 2E-23 4.2E-28 203.7 6.5 165 53-231 270-465 (501)
181 PRK13642 cbiO cobalt transport 99.9 1.7E-23 3.6E-28 189.1 5.4 175 52-251 23-219 (277)
182 PRK13539 cytochrome c biogenes 99.9 1.4E-23 3.1E-28 181.7 4.7 153 53-225 19-189 (207)
183 PRK13541 cytochrome c biogenes 99.9 1.1E-23 2.5E-28 180.6 4.1 156 54-230 18-190 (195)
184 PRK11701 phnK phosphonate C-P 99.9 1.1E-23 2.3E-28 188.5 4.1 178 53-251 23-231 (258)
185 PRK13645 cbiO cobalt transport 99.9 1.7E-23 3.8E-28 190.1 5.4 167 53-230 28-219 (289)
186 PRK14267 phosphate ABC transpo 99.9 1.8E-23 3.8E-28 186.6 5.3 171 52-230 20-216 (253)
187 TIGR03740 galliderm_ABC gallid 99.9 9.1E-24 2E-28 184.9 3.2 159 53-231 17-193 (223)
188 PRK10982 galactose/methyl gala 99.9 2.3E-23 4.9E-28 202.7 6.1 165 53-231 15-203 (491)
189 PRK09984 phosphonate/organopho 99.9 1.7E-23 3.6E-28 187.7 4.7 170 53-230 21-221 (262)
190 PRK10261 glutathione transport 99.9 1.4E-23 2.9E-28 209.4 4.5 177 53-251 341-543 (623)
191 COG1129 MglA ABC-type sugar tr 99.9 2E-23 4.3E-28 197.4 5.3 167 52-232 24-215 (500)
192 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.7E-26 183.8 17.4 172 55-289 152-334 (390)
193 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.4E-23 5.2E-28 184.7 5.3 146 53-225 11-178 (246)
194 PLN03073 ABC transporter F fam 99.9 1.3E-22 2.8E-27 203.9 11.1 146 53-225 526-686 (718)
195 PRK13549 xylose transporter AT 99.9 1.8E-23 3.9E-28 204.1 4.7 167 53-231 22-212 (506)
196 PRK10744 pstB phosphate transp 99.9 5.7E-23 1.2E-27 184.0 7.5 164 53-224 30-216 (260)
197 COG4525 TauB ABC-type taurine 99.9 3.8E-23 8.3E-28 170.9 5.8 157 52-228 21-198 (259)
198 COG4148 ModC ABC-type molybdat 99.9 4.5E-23 9.7E-28 179.1 6.5 164 54-231 16-198 (352)
199 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-23 4.8E-28 182.1 4.5 167 52-230 21-209 (220)
200 PRK11288 araG L-arabinose tran 99.9 1.7E-23 3.7E-28 204.1 4.0 165 53-231 21-209 (501)
201 PRK14269 phosphate ABC transpo 99.9 5.9E-23 1.3E-27 182.5 7.1 177 53-251 19-220 (246)
202 PRK14268 phosphate ABC transpo 99.9 4.6E-23 9.9E-28 184.4 6.3 181 53-251 29-232 (258)
203 PRK13549 xylose transporter AT 99.9 3.8E-23 8.2E-28 201.9 6.3 165 53-231 279-474 (506)
204 PRK09544 znuC high-affinity zi 99.9 3E-23 6.5E-28 184.7 5.1 150 53-230 21-189 (251)
205 COG0536 Obg Predicted GTPase [ 99.9 1.1E-21 2.3E-26 175.0 14.8 172 54-291 151-336 (369)
206 cd03300 ABC_PotA_N PotA is an 99.9 4.2E-23 9.2E-28 181.8 5.9 163 52-231 16-200 (232)
207 TIGR03410 urea_trans_UrtE urea 99.9 9.3E-24 2E-28 185.7 1.6 157 53-224 17-193 (230)
208 PRK12299 obgE GTPase CgtA; Rev 99.9 3.9E-21 8.5E-26 177.1 19.0 171 55-289 151-329 (335)
209 TIGR02323 CP_lyasePhnK phospho 99.9 4.3E-23 9.2E-28 184.1 5.8 162 53-225 20-211 (253)
210 PRK12296 obgE GTPase CgtA; Rev 99.9 1.9E-21 4.1E-26 185.9 17.4 182 53-291 150-343 (500)
211 cd03248 ABCC_TAP TAP, the Tran 99.9 3.5E-23 7.7E-28 181.5 5.2 161 52-227 30-213 (226)
212 PRK14241 phosphate transporter 99.9 3E-23 6.5E-28 185.6 4.8 170 53-230 21-215 (258)
213 PRK14259 phosphate ABC transpo 99.9 5.6E-23 1.2E-27 184.9 6.3 177 53-247 30-228 (269)
214 cd03254 ABCC_Glucan_exporter_l 99.9 3.7E-23 8E-28 181.8 5.0 169 53-250 20-215 (229)
215 PRK10938 putative molybdenum t 99.9 4.4E-23 9.5E-28 200.8 5.9 164 53-231 20-204 (490)
216 TIGR02770 nickel_nikD nickel i 99.9 6.3E-23 1.4E-27 180.5 6.3 176 53-251 3-205 (230)
217 PRK10261 glutathione transport 99.9 3.5E-23 7.7E-28 206.4 5.1 179 53-252 33-249 (623)
218 cd03251 ABCC_MsbA MsbA is an e 99.9 5.7E-23 1.2E-27 181.1 5.7 160 53-227 19-201 (234)
219 PRK13545 tagH teichoic acids e 99.9 1.6E-22 3.5E-27 193.2 9.2 156 53-231 41-212 (549)
220 PRK14235 phosphate transporter 99.9 6.2E-23 1.3E-27 184.5 5.9 165 53-225 36-224 (267)
221 PRK14245 phosphate ABC transpo 99.9 6.9E-23 1.5E-27 182.4 6.1 178 53-251 20-224 (250)
222 PRK14248 phosphate ABC transpo 99.9 7.9E-23 1.7E-27 183.9 6.4 181 53-251 38-242 (268)
223 COG0488 Uup ATPase components 99.9 7.9E-23 1.7E-27 197.5 6.7 171 53-234 20-222 (530)
224 PRK15439 autoinducer 2 ABC tra 99.9 4.6E-23 9.9E-28 201.4 4.9 165 53-231 280-472 (510)
225 TIGR02633 xylG D-xylose ABC tr 99.9 8E-23 1.7E-27 199.4 6.6 166 53-231 277-472 (500)
226 TIGR03771 anch_rpt_ABC anchore 99.9 3.7E-23 7.9E-28 181.1 3.8 157 58-230 2-181 (223)
227 cd03299 ABC_ModC_like Archeal 99.9 3.8E-23 8.2E-28 182.5 3.8 161 53-230 16-198 (235)
228 PRK10762 D-ribose transporter 99.9 6E-23 1.3E-27 200.2 5.6 164 53-230 269-463 (501)
229 PRK15134 microcin C ABC transp 99.9 4.3E-23 9.4E-28 202.5 4.5 173 53-231 26-226 (529)
230 cd03234 ABCG_White The White s 99.9 6.2E-23 1.3E-27 180.0 5.0 160 53-230 24-212 (226)
231 PRK10982 galactose/methyl gala 99.9 1E-22 2.2E-27 198.2 6.9 165 53-231 265-460 (491)
232 TIGR00968 3a0106s01 sulfate AB 99.9 8.1E-23 1.7E-27 180.6 5.6 162 53-231 17-200 (237)
233 PRK13547 hmuV hemin importer A 99.9 4.7E-22 1E-26 179.0 10.6 171 53-230 18-223 (272)
234 PRK14274 phosphate ABC transpo 99.9 1.1E-22 2.4E-27 182.1 6.4 181 53-251 29-233 (259)
235 PRK10636 putative ABC transpor 99.9 1.2E-22 2.5E-27 202.9 7.2 167 53-231 18-215 (638)
236 PRK15134 microcin C ABC transp 99.9 7.1E-23 1.5E-27 201.0 5.3 165 53-230 303-494 (529)
237 PRK14275 phosphate ABC transpo 99.9 1E-22 2.3E-27 184.7 6.0 168 53-230 56-249 (286)
238 TIGR02729 Obg_CgtA Obg family 99.9 7.2E-21 1.6E-25 175.2 18.3 170 55-287 150-328 (329)
239 PRK14237 phosphate transporter 99.9 1.5E-22 3.3E-27 181.9 7.0 182 52-251 36-241 (267)
240 PRK14256 phosphate ABC transpo 99.9 1.8E-22 3.8E-27 180.0 7.3 168 53-230 21-215 (252)
241 COG4161 ArtP ABC-type arginine 99.9 1.1E-22 2.4E-27 163.5 5.3 165 53-228 19-206 (242)
242 cd03252 ABCC_Hemolysin The ABC 99.9 5.8E-23 1.3E-27 181.5 4.1 160 53-227 19-201 (237)
243 PRK14239 phosphate transporter 99.9 1.8E-22 3.9E-27 179.9 7.2 179 53-251 22-226 (252)
244 PRK14254 phosphate ABC transpo 99.9 6.8E-23 1.5E-27 185.8 4.4 170 53-230 56-247 (285)
245 PRK14244 phosphate ABC transpo 99.9 9.6E-23 2.1E-27 181.6 5.4 180 53-250 22-226 (251)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.4E-22 3.1E-27 179.1 6.4 173 53-250 20-215 (238)
247 COG4586 ABC-type uncharacteriz 99.9 6.2E-22 1.4E-26 171.5 10.1 176 53-260 41-245 (325)
248 PRK14251 phosphate ABC transpo 99.9 1.4E-22 3.1E-27 180.5 6.4 170 53-230 21-214 (251)
249 COG2274 SunT ABC-type bacterio 99.9 1.5E-22 3.2E-27 201.6 7.0 178 53-259 490-694 (709)
250 PRK10419 nikE nickel transport 99.9 1.3E-22 2.8E-27 182.4 6.0 166 53-230 29-220 (268)
251 PRK09601 GTP-binding protein Y 99.9 6.5E-21 1.4E-25 175.5 17.0 238 63-315 3-302 (364)
252 cd03290 ABCC_SUR1_N The SUR do 99.9 1.2E-22 2.6E-27 177.3 5.2 160 52-227 17-206 (218)
253 PRK14272 phosphate ABC transpo 99.9 1.6E-22 3.5E-27 180.2 6.1 182 52-251 20-226 (252)
254 TIGR02633 xylG D-xylose ABC tr 99.9 7.2E-23 1.6E-27 199.7 4.1 167 53-231 18-210 (500)
255 TIGR03269 met_CoM_red_A2 methy 99.9 1E-22 2.3E-27 199.4 5.2 167 53-230 301-496 (520)
256 PRK13546 teichoic acids export 99.9 9.5E-22 2.1E-26 176.2 10.9 155 53-230 41-211 (264)
257 COG0410 LivF ABC-type branched 99.9 1.7E-22 3.7E-27 171.9 5.7 160 53-226 20-200 (237)
258 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.4E-22 2.9E-27 205.6 5.9 177 53-258 496-697 (710)
259 PRK14243 phosphate transporter 99.9 2.9E-22 6.3E-27 179.8 7.1 170 53-230 27-218 (264)
260 PRK15064 ABC transporter ATP-b 99.9 2.7E-22 5.8E-27 197.0 7.3 147 53-225 336-497 (530)
261 PRK14249 phosphate ABC transpo 99.9 3.6E-22 7.9E-27 177.9 7.3 170 53-230 21-214 (251)
262 PRK14270 phosphate ABC transpo 99.9 2.4E-22 5.3E-27 179.0 6.0 170 53-230 21-214 (251)
263 KOG0927 Predicted transporter 99.9 8.7E-22 1.9E-26 184.4 9.9 150 55-230 409-574 (614)
264 PRK11174 cysteine/glutathione 99.9 2.7E-22 5.9E-27 199.4 7.0 176 53-258 367-569 (588)
265 CHL00131 ycf16 sulfate ABC tra 99.9 1.8E-22 3.8E-27 180.0 5.0 160 53-226 24-214 (252)
266 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.6E-22 5.6E-27 202.8 6.8 173 53-255 470-667 (686)
267 cd03253 ABCC_ATM1_transporter 99.9 2.5E-22 5.4E-27 177.3 5.8 160 53-227 18-200 (236)
268 PRK14271 phosphate ABC transpo 99.9 3E-22 6.4E-27 180.8 6.4 180 53-251 38-241 (276)
269 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-20 3.3E-25 177.5 18.2 170 56-291 152-330 (424)
270 PRK14253 phosphate ABC transpo 99.9 3E-22 6.5E-27 178.2 6.1 170 52-230 19-212 (249)
271 PRK11176 lipid transporter ATP 99.9 1.9E-22 4.1E-27 200.3 5.3 178 53-258 360-564 (582)
272 PRK10418 nikD nickel transport 99.9 3.6E-22 7.9E-27 178.2 6.6 165 53-230 20-209 (254)
273 cd03216 ABC_Carb_Monos_I This 99.9 2.1E-22 4.5E-27 167.9 4.7 120 53-230 17-150 (163)
274 PRK11147 ABC transporter ATPas 99.9 4.5E-22 9.8E-27 198.9 8.0 164 53-231 20-222 (635)
275 PRK14261 phosphate ABC transpo 99.9 4.2E-22 9.2E-27 177.7 6.9 181 53-251 23-227 (253)
276 PRK14238 phosphate transporter 99.9 3.4E-22 7.3E-27 180.1 6.2 180 53-250 41-244 (271)
277 PRK09580 sufC cysteine desulfu 99.9 9.5E-22 2.1E-26 174.9 8.9 160 53-226 18-208 (248)
278 TIGR03269 met_CoM_red_A2 methy 99.9 3.4E-22 7.3E-27 195.9 6.5 168 53-231 17-238 (520)
279 PRK14240 phosphate transporter 99.9 2.6E-22 5.6E-27 178.7 5.1 170 53-230 20-213 (250)
280 PRK14258 phosphate ABC transpo 99.9 3.9E-22 8.5E-27 178.7 6.2 170 53-230 24-219 (261)
281 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.3E-22 7.1E-27 197.1 6.2 153 53-230 339-508 (552)
282 PRK11819 putative ABC transpor 99.9 5.2E-22 1.1E-26 195.8 7.5 153 53-230 341-510 (556)
283 PRK13409 putative ATPase RIL; 99.9 1.9E-21 4.1E-26 192.0 11.4 143 54-226 357-517 (590)
284 TIGR01257 rim_protein retinal- 99.9 8.9E-22 1.9E-26 212.4 9.4 174 53-252 947-1140(2272)
285 cd03223 ABCD_peroxisomal_ALDP 99.9 1.6E-21 3.5E-26 163.0 9.1 126 53-229 18-154 (166)
286 COG4987 CydC ABC-type transpor 99.9 1.2E-21 2.6E-26 183.8 8.9 174 53-255 355-555 (573)
287 PRK14236 phosphate transporter 99.9 5.8E-22 1.3E-26 178.6 6.7 180 53-250 42-245 (272)
288 PRK11160 cysteine/glutathione 99.9 6.1E-22 1.3E-26 196.1 7.4 176 53-257 357-558 (574)
289 cd03229 ABC_Class3 This class 99.9 2.3E-22 5E-27 170.0 3.7 132 53-224 17-162 (178)
290 cd03244 ABCC_MRP_domain2 Domai 99.9 2.8E-22 6.1E-27 175.2 4.2 155 52-226 20-201 (221)
291 PRK15064 ABC transporter ATP-b 99.9 4.5E-22 9.8E-27 195.3 6.2 167 53-231 18-221 (530)
292 PRK14262 phosphate ABC transpo 99.9 3.7E-22 7.9E-27 177.8 5.0 170 53-230 20-213 (250)
293 PRK14260 phosphate ABC transpo 99.9 4.6E-22 1E-26 178.1 5.6 170 53-230 24-217 (259)
294 TIGR00436 era GTP-binding prot 99.9 2.3E-20 5.1E-25 168.0 16.6 155 64-289 2-165 (270)
295 PRK10790 putative multidrug tr 99.9 4.1E-22 9E-27 198.2 5.7 176 53-258 358-560 (592)
296 PRK14257 phosphate ABC transpo 99.9 6.1E-22 1.3E-26 182.6 6.3 189 53-259 99-311 (329)
297 cd03230 ABC_DR_subfamily_A Thi 99.9 2.4E-22 5.2E-27 169.1 3.3 128 53-225 17-157 (173)
298 PRK14246 phosphate ABC transpo 99.9 8.6E-22 1.9E-26 176.1 7.1 168 52-230 26-220 (257)
299 cd03289 ABCC_CFTR2 The CFTR su 99.9 3E-22 6.4E-27 180.3 4.1 175 52-257 20-221 (275)
300 PRK03695 vitamin B12-transport 99.9 4E-22 8.7E-27 177.3 4.9 162 53-230 13-201 (248)
301 PRK14255 phosphate ABC transpo 99.8 6.6E-22 1.4E-26 176.3 6.1 163 53-225 22-209 (252)
302 COG4674 Uncharacterized ABC-ty 99.8 5.8E-22 1.2E-26 163.9 5.2 193 52-267 21-241 (249)
303 cd03246 ABCC_Protease_Secretio 99.8 4E-22 8.8E-27 167.7 4.3 130 52-227 18-160 (173)
304 PRK15177 Vi polysaccharide exp 99.8 4.8E-22 1E-26 172.8 4.7 152 53-230 4-171 (213)
305 PRK14263 phosphate ABC transpo 99.8 9.4E-22 2E-26 176.2 6.5 170 53-230 25-216 (261)
306 cd03369 ABCC_NFT1 Domain 2 of 99.8 8.3E-22 1.8E-26 170.6 5.9 150 52-226 24-187 (207)
307 PRK11819 putative ABC transpor 99.8 7.5E-22 1.6E-26 194.7 6.2 162 53-230 24-228 (556)
308 PRK14266 phosphate ABC transpo 99.8 1.2E-21 2.6E-26 174.4 6.8 164 53-224 20-206 (250)
309 TIGR00958 3a01208 Conjugate Tr 99.8 8E-22 1.7E-26 199.6 6.2 178 53-259 498-700 (711)
310 PRK14265 phosphate ABC transpo 99.8 6.3E-22 1.4E-26 178.5 4.6 170 53-230 37-228 (274)
311 TIGR01187 potA spermidine/putr 99.8 6E-22 1.3E-26 182.7 4.4 158 67-251 1-180 (325)
312 COG4778 PhnL ABC-type phosphon 99.8 2.8E-21 6.2E-26 156.5 7.6 168 53-232 28-222 (235)
313 TIGR03375 type_I_sec_LssB type 99.8 9.7E-22 2.1E-26 198.9 6.1 171 53-252 482-679 (694)
314 PRK14264 phosphate ABC transpo 99.8 1E-21 2.3E-26 179.7 5.7 170 53-230 62-267 (305)
315 COG1119 ModF ABC-type molybden 99.8 3.6E-21 7.8E-26 165.1 8.5 158 53-224 48-234 (257)
316 TIGR01257 rim_protein retinal- 99.8 8.9E-22 1.9E-26 212.4 5.8 163 53-231 1956-2139(2272)
317 cd03238 ABC_UvrA The excision 99.8 3.1E-21 6.7E-26 162.1 7.8 124 53-227 12-153 (176)
318 PRK13657 cyclic beta-1,2-gluca 99.8 1.1E-21 2.3E-26 195.0 5.5 170 53-251 352-548 (588)
319 cd03236 ABC_RNaseL_inhibitor_d 99.8 4.8E-22 1E-26 177.2 2.6 157 53-226 18-202 (255)
320 cd03215 ABC_Carb_Monos_II This 99.8 3.2E-21 7E-26 163.6 7.5 140 53-230 17-172 (182)
321 PRK14252 phosphate ABC transpo 99.8 1.5E-21 3.3E-26 175.3 5.8 171 53-230 33-228 (265)
322 TIGR02868 CydC thiol reductant 99.8 1.2E-21 2.6E-26 192.4 5.4 150 53-222 352-528 (529)
323 KOG0058 Peptide exporter, ABC 99.8 1.7E-21 3.7E-26 188.6 6.0 184 53-261 485-691 (716)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.2E-21 2.7E-26 193.1 5.0 164 52-231 21-227 (552)
325 PRK11058 GTPase HflX; Provisio 99.8 7.3E-20 1.6E-24 173.8 16.9 197 24-288 161-362 (426)
326 TIGR02203 MsbA_lipidA lipid A 99.8 1E-21 2.3E-26 194.6 4.5 160 53-230 349-535 (571)
327 TIGR01193 bacteriocin_ABC ABC- 99.8 1.1E-21 2.3E-26 199.0 4.5 171 53-251 491-687 (708)
328 PLN03211 ABC transporter G-25; 99.8 4.9E-21 1.1E-25 191.3 9.1 174 52-251 84-286 (659)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 6.1E-21 1.3E-25 155.7 7.7 101 53-224 17-128 (144)
330 cd03217 ABC_FeS_Assembly ABC-t 99.8 8.1E-22 1.8E-26 169.8 2.5 137 53-227 17-168 (200)
331 cd03222 ABC_RNaseL_inhibitor T 99.8 5.1E-21 1.1E-25 161.0 7.2 101 57-225 20-134 (177)
332 PRK10938 putative molybdenum t 99.8 3.3E-21 7.3E-26 187.6 7.0 160 53-226 277-465 (490)
333 TIGR01192 chvA glucan exporter 99.8 3.1E-21 6.8E-26 191.4 6.9 172 53-253 352-550 (585)
334 cd03247 ABCC_cytochrome_bd The 99.8 6.9E-21 1.5E-25 161.0 7.9 131 53-227 19-161 (178)
335 cd03228 ABCC_MRP_Like The MRP 99.8 7.9E-21 1.7E-25 159.6 8.2 129 53-227 19-159 (171)
336 COG1160 Predicted GTPases [Gen 99.8 6.6E-20 1.4E-24 170.0 14.9 155 62-287 178-350 (444)
337 cd01878 HflX HflX subfamily. 99.8 1.5E-19 3.3E-24 155.9 16.2 193 27-287 8-204 (204)
338 COG4133 CcmA ABC-type transpor 99.8 1.7E-21 3.7E-26 160.4 3.7 155 52-223 18-190 (209)
339 cd01898 Obg Obg subfamily. Th 99.8 2.3E-19 4.9E-24 149.7 16.5 161 64-287 2-170 (170)
340 TIGR01842 type_I_sec_PrtD type 99.8 4.1E-21 9E-26 189.2 7.0 170 53-251 335-532 (544)
341 COG4172 ABC-type uncharacteriz 99.8 6.9E-21 1.5E-25 172.9 7.2 188 53-263 304-518 (534)
342 TIGR02204 MsbA_rel ABC transpo 99.8 4.8E-21 1E-25 190.0 6.6 170 53-251 357-553 (576)
343 COG1084 Predicted GTPase [Gene 99.8 1.4E-19 3E-24 160.9 15.1 159 62-286 168-334 (346)
344 TIGR01846 type_I_sec_HlyB type 99.8 4.8E-21 1E-25 193.7 6.6 172 53-253 474-672 (694)
345 TIGR02857 CydD thiol reductant 99.8 3.1E-21 6.7E-26 189.5 4.9 158 53-229 339-523 (529)
346 cd03250 ABCC_MRP_domain1 Domai 99.8 1.2E-20 2.6E-25 163.0 7.9 143 52-226 21-191 (204)
347 COG4107 PhnK ABC-type phosphon 99.8 1.1E-20 2.4E-25 153.7 7.2 176 51-251 21-231 (258)
348 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.2E-20 2.6E-25 186.2 8.8 164 53-248 359-546 (555)
349 PRK10522 multidrug transporter 99.8 5.6E-21 1.2E-25 188.3 6.5 167 53-250 340-527 (547)
350 cd03288 ABCC_SUR2 The SUR doma 99.8 6E-21 1.3E-25 170.6 6.0 160 52-227 37-219 (257)
351 COG0396 sufC Cysteine desulfur 99.8 4.4E-21 9.4E-26 162.8 4.4 165 53-229 21-210 (251)
352 PRK10789 putative multidrug tr 99.8 6.7E-21 1.5E-25 188.5 6.5 174 53-255 332-532 (569)
353 COG1132 MdlB ABC-type multidru 99.8 7E-21 1.5E-25 188.5 6.5 179 53-260 346-551 (567)
354 PRK10535 macrolide transporter 99.8 4.8E-21 1E-25 191.8 5.3 167 53-230 25-211 (648)
355 cd03232 ABC_PDR_domain2 The pl 99.8 1.5E-20 3.2E-25 160.9 7.6 137 53-230 24-177 (192)
356 cd03233 ABC_PDR_domain1 The pl 99.8 2.5E-21 5.3E-26 167.0 2.5 150 53-231 24-189 (202)
357 KOG0057 Mitochondrial Fe/S clu 99.8 5.9E-21 1.3E-25 179.3 5.0 171 53-251 369-564 (591)
358 COG4172 ABC-type uncharacteriz 99.8 7.3E-21 1.6E-25 172.8 5.1 190 53-259 27-245 (534)
359 KOG0055 Multidrug/pheromone ex 99.8 1.2E-20 2.6E-25 192.2 7.1 177 53-258 370-573 (1228)
360 PRK13409 putative ATPase RIL; 99.8 1.8E-21 3.8E-26 192.2 0.9 159 53-231 91-280 (590)
361 cd03213 ABCG_EPDR ABCG transpo 99.8 2.7E-20 5.9E-25 159.5 7.7 138 53-230 26-180 (194)
362 TIGR00954 3a01203 Peroxysomal 99.8 1.2E-20 2.6E-25 189.2 5.0 154 53-229 469-645 (659)
363 COG0012 Predicted GTPase, prob 99.8 1.4E-19 3.1E-24 164.3 11.4 88 63-150 3-108 (372)
364 cd03291 ABCC_CFTR1 The CFTR su 99.8 4E-20 8.7E-25 167.0 7.3 143 53-227 54-223 (282)
365 cd01881 Obg_like The Obg-like 99.8 5.3E-19 1.2E-23 148.1 13.3 162 67-286 1-175 (176)
366 COG4136 ABC-type uncharacteriz 99.8 1.2E-19 2.5E-24 144.3 8.3 156 53-223 19-195 (213)
367 COG1134 TagH ABC-type polysacc 99.8 2.8E-19 6E-24 153.6 10.5 169 52-255 43-230 (249)
368 TIGR00955 3a01204 The Eye Pigm 99.8 9.4E-20 2E-24 181.7 7.5 165 52-231 41-236 (617)
369 PTZ00265 multidrug resistance 99.8 3.7E-20 8E-25 198.5 4.9 178 53-248 1185-1434(1466)
370 PLN03073 ABC transporter F fam 99.8 1.9E-20 4E-25 188.3 2.4 171 53-231 194-410 (718)
371 PLN03232 ABC transporter C fam 99.8 7.7E-20 1.7E-24 197.3 6.7 179 53-261 1253-1458(1495)
372 cd00267 ABC_ATPase ABC (ATP-bi 99.8 9.4E-20 2E-24 150.9 5.3 115 53-226 16-143 (157)
373 PLN03130 ABC transporter C fam 99.8 1.2E-19 2.5E-24 196.3 6.8 177 53-259 1256-1459(1622)
374 PRK15494 era GTPase Era; Provi 99.8 4.7E-18 1E-22 157.5 16.3 156 64-289 54-217 (339)
375 PRK05291 trmE tRNA modificatio 99.8 7.6E-18 1.6E-22 161.6 17.9 154 62-289 215-371 (449)
376 PTZ00243 ABC transporter; Prov 99.8 1.8E-19 3.9E-24 194.5 7.2 178 53-260 1327-1532(1560)
377 COG0370 FeoB Fe2+ transport sy 99.8 4E-18 8.7E-23 164.8 15.5 155 63-289 4-165 (653)
378 TIGR00957 MRP_assoc_pro multi 99.8 3.1E-19 6.6E-24 192.9 8.5 177 53-259 1303-1506(1522)
379 TIGR00956 3a01205 Pleiotropic 99.8 3.3E-19 7.2E-24 190.8 7.7 158 53-225 780-964 (1394)
380 KOG0055 Multidrug/pheromone ex 99.8 4E-19 8.7E-24 181.2 6.8 180 53-261 1007-1213(1228)
381 PLN03140 ABC transporter G fam 99.8 1.2E-18 2.5E-23 186.5 9.7 171 53-231 182-407 (1470)
382 KOG1191 Mitochondrial GTPase [ 99.8 4.5E-18 9.7E-23 158.0 12.1 173 61-292 267-454 (531)
383 COG4618 ArpD ABC-type protease 99.8 1.9E-18 4.1E-23 161.2 9.6 159 53-230 353-539 (580)
384 PRK00089 era GTPase Era; Revie 99.8 2.2E-17 4.7E-22 150.4 16.5 156 63-288 6-171 (292)
385 TIGR00956 3a01205 Pleiotropic 99.8 5.4E-19 1.2E-23 189.2 6.8 168 52-231 77-280 (1394)
386 PTZ00265 multidrug resistance 99.8 2.3E-19 4.9E-24 192.4 3.6 161 53-228 402-645 (1466)
387 COG4138 BtuD ABC-type cobalami 99.8 2.5E-18 5.5E-23 140.1 8.6 150 54-223 17-192 (248)
388 cd01900 YchF YchF subfamily. 99.8 3.2E-18 6.9E-23 153.0 9.8 86 65-150 1-103 (274)
389 PLN03140 ABC transporter G fam 99.8 5.7E-19 1.2E-23 188.8 5.4 163 53-231 897-1089(1470)
390 COG4167 SapF ABC-type antimicr 99.8 3.8E-18 8.1E-23 140.1 8.9 180 53-256 30-234 (267)
391 KOG0066 eIF2-interacting prote 99.7 1.6E-18 3.4E-23 158.9 7.3 145 54-225 605-763 (807)
392 KOG0059 Lipid exporter ABCA1 a 99.7 3E-18 6.6E-23 176.5 10.2 166 53-233 582-769 (885)
393 KOG0062 ATPase component of AB 99.7 1.4E-18 3E-23 162.2 6.7 194 4-227 302-543 (582)
394 cd01897 NOG NOG1 is a nucleola 99.7 8.6E-17 1.9E-21 133.9 16.8 158 64-287 2-167 (168)
395 TIGR01271 CFTR_protein cystic 99.7 1.1E-18 2.4E-23 188.1 6.6 169 53-252 1236-1431(1490)
396 cd03270 ABC_UvrA_I The excisio 99.7 4.7E-18 1E-22 149.0 9.0 70 160-229 118-205 (226)
397 COG1101 PhnK ABC-type uncharac 99.7 2E-18 4.3E-23 145.2 6.2 157 53-224 23-210 (263)
398 cd04164 trmE TrmE (MnmE, ThdF, 99.7 9.3E-17 2E-21 131.6 15.7 154 62-287 1-156 (157)
399 PF00005 ABC_tran: ABC transpo 99.7 3E-19 6.5E-24 144.2 -0.1 120 54-196 3-137 (137)
400 cd03278 ABC_SMC_barmotin Barmo 99.7 9.7E-19 2.1E-23 150.1 2.9 154 53-230 14-183 (197)
401 KOG0056 Heavy metal exporter H 99.7 3.7E-18 8E-23 158.3 6.6 181 53-260 555-760 (790)
402 cd01879 FeoB Ferrous iron tran 99.7 1.7E-16 3.6E-21 130.5 14.9 148 67-287 1-156 (158)
403 TIGR03594 GTPase_EngA ribosome 99.7 1.5E-16 3.1E-21 152.6 16.3 155 64-289 1-161 (429)
404 PRK09554 feoB ferrous iron tra 99.7 1.6E-16 3.4E-21 160.6 17.2 153 63-287 4-167 (772)
405 PRK03003 GTP-binding protein D 99.7 3.4E-16 7.4E-21 151.5 17.8 157 62-288 211-382 (472)
406 cd01894 EngA1 EngA1 subfamily. 99.7 2.5E-16 5.4E-21 129.1 14.3 150 66-286 1-156 (157)
407 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.6E-16 7.9E-21 149.3 17.1 92 61-152 202-295 (442)
408 PRK09518 bifunctional cytidyla 99.7 5.8E-16 1.3E-20 156.6 19.2 156 62-289 275-437 (712)
409 TIGR00957 MRP_assoc_pro multi 99.7 2.3E-17 5E-22 178.5 9.6 160 53-251 655-840 (1522)
410 TIGR01271 CFTR_protein cystic 99.7 3.4E-17 7.3E-22 176.8 9.5 147 53-227 443-612 (1490)
411 KOG1491 Predicted GTP-binding 99.7 5.2E-16 1.1E-20 138.3 15.2 227 62-299 20-317 (391)
412 PRK03003 GTP-binding protein D 99.7 4.8E-16 1E-20 150.4 16.3 155 63-289 39-200 (472)
413 PRK00093 GTP-binding protein D 99.7 1.2E-15 2.7E-20 146.4 18.3 156 62-287 173-343 (435)
414 PLN03232 ABC transporter C fam 99.7 3.3E-17 7.1E-22 177.1 7.8 157 53-252 634-819 (1495)
415 PRK00093 GTP-binding protein D 99.7 7.6E-16 1.7E-20 147.9 16.4 154 63-287 2-161 (435)
416 PLN03130 ABC transporter C fam 99.7 4.5E-17 9.9E-22 176.4 8.5 158 53-252 634-819 (1622)
417 PRK09518 bifunctional cytidyla 99.7 9.3E-16 2E-20 155.2 17.5 157 62-288 450-621 (712)
418 KOG0062 ATPase component of AB 99.7 5.3E-17 1.1E-21 151.7 7.7 152 57-234 101-267 (582)
419 KOG0061 Transporter, ABC super 99.7 7.3E-17 1.6E-21 159.9 9.0 165 53-231 47-240 (613)
420 PTZ00243 ABC transporter; Prov 99.7 9.8E-17 2.1E-21 173.5 10.4 161 53-251 677-860 (1560)
421 TIGR03594 GTPase_EngA ribosome 99.7 1.9E-15 4.2E-20 144.8 17.9 155 63-287 173-343 (429)
422 PF01926 MMR_HSR1: 50S ribosom 99.7 8.6E-16 1.9E-20 120.4 12.0 88 64-151 1-91 (116)
423 cd04163 Era Era subfamily. Er 99.7 4.8E-15 1E-19 122.1 16.3 154 63-287 4-168 (168)
424 cd04171 SelB SelB subfamily. 99.7 5.6E-15 1.2E-19 122.0 16.7 81 64-151 2-86 (164)
425 COG0218 Predicted GTPase [Gene 99.6 3.8E-15 8.1E-20 124.9 14.3 57 61-120 23-81 (200)
426 cd01895 EngA2 EngA2 subfamily. 99.6 9.6E-15 2.1E-19 121.4 16.4 154 63-286 3-173 (174)
427 TIGR00092 GTP-binding protein 99.6 9.4E-15 2E-19 134.9 16.9 88 63-150 3-108 (368)
428 PRK04213 GTP-binding protein; 99.6 6.6E-15 1.4E-19 126.5 14.4 54 62-119 9-62 (201)
429 KOG0410 Predicted GTP binding 99.6 5.4E-16 1.2E-20 137.3 7.7 190 28-287 147-340 (410)
430 TIGR00437 feoB ferrous iron tr 99.6 4.5E-15 9.7E-20 146.7 15.1 147 69-287 1-154 (591)
431 cd04160 Arfrp1 Arfrp1 subfamil 99.6 9.8E-15 2.1E-19 121.3 14.5 150 64-285 1-166 (167)
432 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.5E-16 5.4E-21 140.3 4.8 77 156-232 124-238 (251)
433 KOG0054 Multidrug resistance-a 99.6 6.4E-16 1.4E-20 161.2 8.2 183 53-264 1157-1365(1381)
434 cd01861 Rab6 Rab6 subfamily. 99.6 4.7E-14 1E-18 116.4 17.4 151 64-287 2-161 (161)
435 KOG1423 Ras-like GTPase ERA [C 99.6 1.1E-14 2.4E-19 128.2 13.9 89 63-151 73-167 (379)
436 cd03271 ABC_UvrA_II The excisi 99.6 6.6E-16 1.4E-20 137.5 5.9 73 158-230 148-239 (261)
437 KOG0054 Multidrug resistance-a 99.6 2.9E-15 6.2E-20 156.4 10.7 165 53-260 538-730 (1381)
438 cd00880 Era_like Era (E. coli 99.6 3.9E-14 8.4E-19 115.3 15.3 150 67-286 1-162 (163)
439 PRK00454 engB GTP-binding prot 99.6 3.7E-14 8.1E-19 121.1 15.8 153 62-288 24-194 (196)
440 KOG0927 Predicted transporter 99.6 6.9E-16 1.5E-20 145.0 5.1 173 53-234 92-291 (614)
441 COG4615 PvdE ABC-type sideroph 99.6 2.9E-15 6.4E-20 136.2 8.9 156 54-232 341-518 (546)
442 cd00879 Sar1 Sar1 subfamily. 99.6 4.6E-14 1E-18 120.1 15.7 80 63-152 20-99 (190)
443 COG4178 ABC-type uncharacteriz 99.6 1.2E-14 2.6E-19 140.7 13.3 152 53-231 410-582 (604)
444 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.9E-15 4.1E-20 133.9 7.2 62 170-231 152-229 (243)
445 cd03279 ABC_sbcCD SbcCD and ot 99.6 2.2E-15 4.8E-20 130.9 7.0 58 169-226 116-196 (213)
446 TIGR00231 small_GTP small GTP- 99.6 3.2E-14 6.9E-19 115.7 13.3 57 63-119 2-60 (161)
447 cd01889 SelB_euk SelB subfamil 99.6 6.7E-14 1.5E-18 119.5 15.1 147 64-287 2-185 (192)
448 cd03240 ABC_Rad50 The catalyti 99.6 1.3E-15 2.8E-20 131.5 3.9 59 171-229 110-189 (204)
449 cd03274 ABC_SMC4_euk Eukaryoti 99.6 4.4E-16 9.5E-21 135.1 0.9 70 170-249 121-206 (212)
450 cd00881 GTP_translation_factor 99.6 1.3E-13 2.9E-18 116.5 16.0 147 64-287 1-186 (189)
451 PRK15467 ethanolamine utilizat 99.6 4.5E-14 9.7E-19 117.0 12.8 140 64-289 3-148 (158)
452 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.4E-13 3E-18 114.3 15.3 147 64-287 2-165 (168)
453 COG1245 Predicted ATPase, RNas 99.6 1.8E-15 3.8E-20 139.8 4.0 148 54-229 354-522 (591)
454 TIGR03598 GTPase_YsxC ribosome 99.6 6.7E-14 1.4E-18 118.2 13.3 87 62-151 18-112 (179)
455 cd01876 YihA_EngB The YihA (En 99.6 9.8E-14 2.1E-18 114.6 13.9 54 65-121 2-57 (170)
456 cd04155 Arl3 Arl3 subfamily. 99.6 1.4E-13 3E-18 115.2 14.8 80 62-151 14-93 (173)
457 cd01868 Rab11_like Rab11-like. 99.6 3.2E-13 6.9E-18 112.0 16.9 151 64-287 5-164 (165)
458 cd04142 RRP22 RRP22 subfamily. 99.6 3E-13 6.6E-18 116.2 17.2 161 64-287 2-173 (198)
459 cd04159 Arl10_like Arl10-like 99.5 1.8E-13 4E-18 111.8 15.0 147 65-285 2-158 (159)
460 smart00178 SAR Sar1p-like memb 99.5 3.2E-13 7E-18 114.6 16.7 149 63-286 18-183 (184)
461 cd03275 ABC_SMC1_euk Eukaryoti 99.5 5.6E-15 1.2E-19 131.3 5.7 58 173-230 152-226 (247)
462 COG1129 MglA ABC-type sugar tr 99.5 1.9E-14 4.1E-19 136.8 9.4 174 53-251 276-480 (500)
463 PF00009 GTP_EFTU: Elongation 99.5 3.2E-13 7E-18 115.0 16.0 148 63-288 4-187 (188)
464 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.2E-13 4.8E-18 116.8 15.0 88 64-151 2-95 (196)
465 cd04157 Arl6 Arl6 subfamily. 99.5 3.3E-13 7E-18 111.4 15.6 81 64-152 1-81 (162)
466 PRK09866 hypothetical protein; 99.5 5.5E-13 1.2E-17 129.1 18.1 55 29-97 50-105 (741)
467 cd04151 Arl1 Arl1 subfamily. 99.5 4.2E-13 9E-18 110.7 15.1 147 64-285 1-157 (158)
468 cd01888 eIF2_gamma eIF2-gamma 99.5 4.3E-13 9.2E-18 115.7 15.6 50 239-288 138-199 (203)
469 cd01862 Rab7 Rab7 subfamily. 99.5 1E-12 2.3E-17 109.4 17.1 155 64-287 2-166 (172)
470 cd04166 CysN_ATPS CysN_ATPS su 99.5 1.8E-13 3.9E-18 118.5 12.7 82 64-152 1-113 (208)
471 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.1E-12 2.4E-17 109.0 16.9 151 64-287 4-163 (166)
472 smart00175 RAB Rab subfamily o 99.5 1.1E-12 2.4E-17 108.3 16.8 151 64-287 2-161 (164)
473 cd04112 Rab26 Rab26 subfamily. 99.5 9.7E-13 2.1E-17 112.3 16.8 155 64-291 2-166 (191)
474 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.1E-12 2.4E-17 108.5 16.6 152 63-287 3-163 (164)
475 cd04158 ARD1 ARD1 subfamily. 99.5 7.3E-13 1.6E-17 110.7 15.7 149 64-287 1-160 (169)
476 PF10662 PduV-EutP: Ethanolami 99.5 3.2E-13 7E-18 108.4 12.8 134 63-284 2-142 (143)
477 COG5265 ATM1 ABC-type transpor 99.5 3.9E-15 8.5E-20 136.4 1.9 174 53-259 280-484 (497)
478 KOG0065 Pleiotropic drug resis 99.5 3.3E-14 7.1E-19 145.9 8.2 158 53-226 808-993 (1391)
479 cd01864 Rab19 Rab19 subfamily. 99.5 1.9E-12 4.2E-17 107.5 17.4 151 63-286 4-164 (165)
480 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.5E-12 3.3E-17 107.1 16.5 151 64-287 3-161 (162)
481 cd04144 Ras2 Ras2 subfamily. 99.5 1.4E-12 3E-17 111.3 16.7 162 64-296 1-171 (190)
482 cd04154 Arl2 Arl2 subfamily. 99.5 6.7E-13 1.5E-17 111.3 14.6 148 63-285 15-172 (173)
483 cd04109 Rab28 Rab28 subfamily. 99.5 2.1E-12 4.6E-17 112.3 18.2 156 64-289 2-167 (215)
484 cd00154 Rab Rab family. Rab G 99.5 1.8E-12 3.8E-17 105.8 16.8 148 64-284 2-158 (159)
485 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 8.4E-13 1.8E-17 110.9 15.0 80 63-152 16-95 (174)
486 cd00876 Ras Ras family. The R 99.5 1.3E-12 2.7E-17 107.3 15.7 150 64-286 1-159 (160)
487 cd01866 Rab2 Rab2 subfamily. 99.5 3E-12 6.5E-17 106.8 18.1 152 63-287 5-165 (168)
488 cd04119 RJL RJL (RabJ-Like) su 99.5 1.9E-12 4.1E-17 107.1 16.8 156 64-287 2-166 (168)
489 cd01867 Rab8_Rab10_Rab13_like 99.5 2.1E-12 4.6E-17 107.5 17.1 152 63-287 4-164 (167)
490 cd01863 Rab18 Rab18 subfamily. 99.5 2.1E-12 4.6E-17 106.6 16.6 151 64-286 2-160 (161)
491 cd01890 LepA LepA subfamily. 99.5 1.6E-12 3.4E-17 109.3 15.9 147 64-287 2-176 (179)
492 cd01865 Rab3 Rab3 subfamily. 99.5 2.9E-12 6.3E-17 106.5 17.2 151 64-287 3-162 (165)
493 cd04114 Rab30 Rab30 subfamily. 99.5 2.1E-12 4.5E-17 107.5 16.1 151 63-286 8-167 (169)
494 cd00878 Arf_Arl Arf (ADP-ribos 99.5 2.2E-12 4.7E-17 106.2 15.6 147 64-285 1-157 (158)
495 cd03276 ABC_SMC6_euk Eukaryoti 99.5 1.2E-13 2.7E-18 118.6 8.2 69 157-226 91-179 (198)
496 cd04124 RabL2 RabL2 subfamily. 99.5 3.6E-12 7.7E-17 105.6 16.7 149 64-287 2-157 (161)
497 cd01892 Miro2 Miro2 subfamily. 99.5 3.4E-12 7.3E-17 106.8 16.6 151 62-287 4-165 (169)
498 cd04136 Rap_like Rap-like subf 99.5 3.3E-12 7E-17 105.5 16.2 152 63-287 2-162 (163)
499 cd04139 RalA_RalB RalA/RalB su 99.5 4.3E-12 9.3E-17 104.7 16.7 151 64-287 2-161 (164)
500 TIGR02528 EutP ethanolamine ut 99.5 1.1E-12 2.3E-17 106.2 12.7 74 64-152 2-75 (142)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-63 Score=436.61 Aligned_cols=316 Identities=57% Similarity=0.931 Sum_probs=300.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHH
Q 021103 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (317)
Q Consensus 1 ~~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln 80 (317)
||++|||+++|||++++|+||||++++.+|++|++++++|++.......+++.+|++.+++..+++|||+|++|||||||
T Consensus 2 ~tieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~ 81 (365)
T COG1163 2 MTIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLN 81 (365)
T ss_pred CCHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHH
Confidence 89999999999999999999999999999999999999998775333333347999999999999999999999999999
Q ss_pred HHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHH
Q 021103 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (317)
Q Consensus 81 ~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~ 160 (317)
+|+|....+++|||||+.|.+|.+.++|.+|+++|+||++..+..+.+++.+.+...+.||++++++|........+.+.
T Consensus 82 ~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~ 161 (365)
T COG1163 82 KLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIE 161 (365)
T ss_pred HHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665577899
Q ss_pred HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceee
Q 021103 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (317)
Q Consensus 161 ~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p 240 (317)
+.|+..|+.+++.++......+.+.+|-+....|..++|++.++.+|++++..++.+.+..|.++++++|.+.+++.|+|
T Consensus 162 ~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p 241 (365)
T COG1163 162 RELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKP 241 (365)
T ss_pred HHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEeccceee
Q 021103 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 241 ~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v~ 316 (317)
+++|+||+|+.+.++++.+.+.++.+++||..++|+++|.+.||+.|+.+|||||+||..|++++|+|+++||||.
T Consensus 242 ~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~ 317 (365)
T COG1163 242 ALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVG 317 (365)
T ss_pred eEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-56 Score=378.68 Aligned_cols=316 Identities=78% Similarity=1.209 Sum_probs=305.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHH
Q 021103 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (317)
Q Consensus 1 ~~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln 80 (317)
|+|.+||+++|+.++|.+|+|+|+.++..|+.++++++.++........+++.+|++.+.+..+|++||.|.+||||||.
T Consensus 1 MGIlekI~eIE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs 80 (364)
T KOG1486|consen 1 MGILEKIKEIEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLS 80 (364)
T ss_pred CcHHHHHHHHHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHH
Confidence 89999999999999999999999999999999999999998877766666789999999999999999999999999999
Q ss_pred HHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHH
Q 021103 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (317)
Q Consensus 81 ~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~ 160 (317)
.|++.....++|.|||+.+.+|.+.++|..|+++|.||++..+.++.++++|.....+.+|++++++|+.....+.+.++
T Consensus 81 ~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le 160 (364)
T KOG1486|consen 81 KITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILE 160 (364)
T ss_pred HhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777777899
Q ss_pred HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceee
Q 021103 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (317)
Q Consensus 161 ~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p 240 (317)
..|+.+|+++++++++++..++.-.++.+-..-|.+++|...+..+|.+++..++.+++..|.+.++++|.+.+++.|.+
T Consensus 161 ~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ 240 (364)
T KOG1486|consen 161 KELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIK 240 (364)
T ss_pred HHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEeccceee
Q 021103 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 241 ~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v~ 316 (317)
|++|.||+|.++.++++++.+.++.+.+||.-..|++.|++.||+.|..+|||||.+|..|++++|+|+++|+||.
T Consensus 241 ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve 316 (364)
T KOG1486|consen 241 CLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVE 316 (364)
T ss_pred EEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-43 Score=302.08 Aligned_cols=304 Identities=60% Similarity=0.970 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHH
Q 021103 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLL 82 (317)
Q Consensus 3 ~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L 82 (317)
+-+||+++|+.++|.+|+|+++.++..++.++++++.++.. ....+++.+|++..-+..+++++|.|.+|||||+.-|
T Consensus 2 ~~~ki~~ie~emaktqKNkat~~hlgllkaklaKlrreli~--~g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l 79 (358)
T KOG1487|consen 2 TLEKIKEIEDEMARTQKNKATSFHLGLLKAKLAKLRRELIT--GGGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKL 79 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhcc--CCCCCCCCCccceeecceeeeEEecCccchhhhhhhh
Confidence 66899999999999999999999999999999999988655 2222334578888877789999999999999999999
Q ss_pred hccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHH
Q 021103 83 TGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKE 162 (317)
Q Consensus 83 ~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~ 162 (317)
+|...+|+.|.|||+...+|.+.+.|..+++.|.||+++.+..+.+++.|.....+.+.+++.++|...+......++..
T Consensus 80 ~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~e 159 (358)
T KOG1487|consen 80 TGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKE 159 (358)
T ss_pred cCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred HHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeee
Q 021103 163 LEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242 (317)
Q Consensus 163 L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i 242 (317)
|+-||+++++.|+++-...|++.+|.+.. ++||.+.++.++.+++..++.+-.+-|.+.++++|.+.+++.|.|++
T Consensus 160 leg~girlnk~pp~i~~kkKdkgGInlt~----~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~i 235 (358)
T KOG1487|consen 160 LEGFGIRLNKQPPNIGTKKKDKGGINLTG----THLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCI 235 (358)
T ss_pred hhcceeeccCCCCCccccccccCceeeec----chhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeee
Confidence 99999999999999999999999998877 68999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc
Q 021103 243 YVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV 312 (317)
Q Consensus 243 ~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 312 (317)
+++||+|-++.|+++.++..+..+++||+++||+|+|++.+++.+..+|+|||+.|..|+|..|++++.+
T Consensus 236 yvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~ 305 (358)
T KOG1487|consen 236 YVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSE 305 (358)
T ss_pred eeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 4
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=6.4e-36 Score=263.09 Aligned_cols=232 Identities=70% Similarity=1.136 Sum_probs=212.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|+||||||||+|+|+|....+++|||||+++..|.+.++|.+++++|+||+.+......++..+....++.+|.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999998789999999999999999999999999999998765544445566777788999999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|+.....+.+.+.+.|+.+|+.++++++.++...+.+.++.+....+..++|.+.++.+|++++..++.+.+.++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999877666677889999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEec
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 295 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~ 295 (317)
++++++|.+.+++.|.|+++|+||+|+...++.+.+.+.++.+++||+++.|++++.+.|++.|+.+|||||
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 999999999999999999999999999988877766666778999999999999999999999999999996
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.8e-32 Score=228.72 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=136.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+.++|+||+||||||||+||.++..+ ++|.|.++|..+.... . ....+...++++|
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~--~-~~~~R~~vGmVFQ 84 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK--D-ILKLRRKVGMVFQ 84 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh--h-HHHHHHhcCeecc
Confidence 567788888999999999999999999999999998 9999999997663221 1 1223455677788
Q ss_pred HHhhhccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.++++..++..+.- .....+..+.+.++|+++|+ ..+.+|.+||||||||++|| +++||||
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT 164 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT 164 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc
Confidence 8888887666544332 23344566778899999999 89999999999999999998 8899999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+|||+.+.++++-+ ...+ |.+++||+..+++-+ ...++.+++.-++
T Consensus 165 SALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V---------adrviFmd~G~ii 215 (240)
T COG1126 165 SALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV---------ADRVIFMDQGKII 215 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh---------hheEEEeeCCEEE
Confidence 999999877766655 4556 999999998776543 2345566655443
No 6
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=228.48 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=144.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||||++|||||||++++.++..| ++|.|.++|.++..++-.+++. .++.+++.+|
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~-~R~~IGMIFQ 90 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQ-LRQKIGMIFQ 90 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHH-HHhhccEEec
Confidence 578899999999999999999999999999999999 9999999999988777666644 4566778788
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+..+.. .+++.+.+... ...+..+++.++|+.+|+ +.+.+|.+||||||||++|| +++|||||
T Consensus 91 hFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 91 HFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred cccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 7776654 44555544332 234456789999999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc----ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhH
Q 021103 197 HVDEKLCYQILHEYK----IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 256 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~ 256 (317)
+|||++...+|+.+. ..+ |++++||.++ +.++|++ +.|+.+.-++..+..
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r----------Vavm~~G~lvE~G~v 226 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR----------VAVLDQGRLVEEGTV 226 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh----------heEeeCCEEEEeccH
Confidence 999999877777665 234 9999999966 5566765 456666655544433
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=4.2e-31 Score=227.10 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=126.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.++|+||+|||||||||+|.|+..| ++|.+.++|.++...+...........+++++|
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ 90 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhEEEECc
Confidence 578888999999999999999999999999999998 899999999877654432222223344556666
Q ss_pred HHhhhccCcEEEEEe-----cCCCchhhHHHHHHHHHHccc--ccc-ccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLN-KRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~-----~~~~~~~~~~~~~~~L~~~~l--~~~-~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.+++...+...+. .........+.+..+++.+|+ ... ++|.+|||||+||++|| +++||||
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT 170 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT 170 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence 665555543332211 111111345567788888899 444 78999999999999999 8999999
Q ss_pred CCCCHHHHHHHHHHhc---cc-C-cEEEecCCCChhhHHHHH
Q 021103 196 THVDEKLCYQILHEYK---IH-N-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~~~~~~~~~ 232 (317)
.+||.++...+++.+. .. + |+|++|||+.++..+|++
T Consensus 171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence 9999998666655554 22 4 999999999999877653
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.1e-30 Score=219.62 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||+|||||||||+|+|+..| .+|.|.++|.++. -| ....++++|
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---~p------~~~~~~vFQ 79 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---GP------GPDIGYVFQ 79 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---CC------CCCEEEEec
Confidence 578889999999999999999999999999999998 8999999998761 11 122334445
Q ss_pred HHhhhc---cCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....++ ..+++.+.+... ...+..+++.++|+.+|+ ..+++|.+||||||||++|| ++||||++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 443333 356666655543 233345578999999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH----hccc-CcEEEecCCCChh
Q 021103 197 HVDEKLCYQILHE----YKIH-NAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~----l~~~-~~~i~~shd~~~~ 226 (317)
+||..+...+-+. .... .|+++||||.+.+
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA 194 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEA 194 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 9999875444333 3333 4999999995433
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.6e-28 Score=214.16 Aligned_cols=171 Identities=21% Similarity=0.223 Sum_probs=121.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+||||||||||+++|+|+..| .+|.|.+.|.++.... ..||.++... ..+
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~-~d~ 88 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRKRLRIGYVPQKSS-VDR 88 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccccCCeEEEcCcccc-cCC
Confidence 578888999999999999999999999999999988 8999999887543221 2244333211 000
Q ss_pred HHHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 130 GRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.+. +...|++...... .....+.+.+.++|+++|+ ..++++.+|||||+||+.|| +++|
T Consensus 89 --~fP--~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 89 --SFP--ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred --CCC--cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 000 0112222221111 1123356789999999999 78999999999999999988 9999
Q ss_pred CCCCCCCHHHH---HHHHHHhcccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 193 LPLTHVDEKLC---YQILHEYKIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 193 EPt~~LD~~~~---~~~l~~l~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
|||+++|+... .+++++++..+ +++++|||..... .+.+.++++||-
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~---------~~~D~vi~Ln~~ 215 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---------AYFDRVICLNRH 215 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhH---------hhCCEEEEEcCe
Confidence 99999999874 55666666545 9999999954321 245668888875
No 10
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=3.4e-29 Score=214.56 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=136.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.++++||+||||||+|++|.++..| ++|.|.++|.++.-.|... .+..++++-|
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d~~~----LRr~IGYviQ 82 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLDPVE----LRRKIGYVIQ 82 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCCHHH----HHHhhhhhhh
Confidence 678999999999999999999999999999999988 9999999999987665432 3445677667
Q ss_pred HHhhhccC---cEEEEEecC--CCchhhHHHHHHHHHHccc----cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~~--~~~~~~~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
...++++. +++..+-.. .......+++.++|+.+|+ ..+++|.+|||||+||++++ ++||||
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 66666663 444444332 3344556789999999999 67899999999999999987 899999
Q ss_pred CCCCCHHHHHHHHHHhc----c-cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 195 LTHVDEKLCYQILHEYK----I-HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++|||-+..++-+++. . ..|+|++|||.+.+ .+ ...|.|+++.-+..
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL----------adri~vm~~G~i~Q 216 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL----------ADRIAVMDAGEIVQ 216 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh----------hceEEEecCCeEEE
Confidence 99999998666655543 2 34999999995533 33 34577888876653
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=4.1e-29 Score=228.04 Aligned_cols=183 Identities=21% Similarity=0.217 Sum_probs=144.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|||||||||||++|+|...| ++|.|.++|.++.- .| ...+.+++++|
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~--lp----p~kR~ig~VFQ 84 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITD--VP----PEKRPIGMVFQ 84 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCC--CC----hhhcccceeec
Confidence 578889999999999999999999999999999998 99999999998754 22 34567788889
Q ss_pred HHhhhcc---CcEEEEEecCCC--c-hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK--S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~--~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.++++ .+++.|.+.... . ....+++.++|+.+++ ..+++|.+|||||+||+++| +++|||+
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 8888877 456666655222 1 2345689999999999 88999999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 196 THVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
++||.....++..+++ ..+ |.|++|||.+.+-- -.+.|+|+|+.-+....+.++++.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~---------msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA---------MSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh---------hccceEEccCCceeecCCHHHHhh
Confidence 9999987666655553 334 89999999543321 245688999998776555555544
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.2e-28 Score=223.98 Aligned_cols=183 Identities=19% Similarity=0.195 Sum_probs=140.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++++.|+.++|+||||||||||||+|+|+..| ++|.|.++|..++-+ ++..+++++++|
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l------~P~~R~iamVFQ 82 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDL------PPEKRGIAMVFQ 82 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC------ChhHCCEEEEeC
Confidence 468899999999999999999999999999999998 999999999987542 224566778888
Q ss_pred HHhhhcc---CcEEEEEecCCC--chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~--~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+.++++ .+++.|.+.... .....+++.+..+.+++ .++++|.+|||||+||++++ +++|||+|
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 8777766 456666555432 33456788899999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 197 HVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
+||......+-.+++ ..+ |.|++|||...+-. -...|+|+|+.-+...+....++.
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt---------ladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT---------LADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh---------hCCEEEEEeCCeeeecCChHHHhh
Confidence 999987555444443 233 99999999543321 245688999776665444444443
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=2.1e-28 Score=214.45 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=125.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+..|++++|+|||||||||||++|+|...| .+|.|.++|.++.-+.... .....++..|
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~ke----lAk~ia~vpQ 83 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPKE----LAKKLAYVPQ 83 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHHH----HhhhEEEecc
Confidence 578888999999999999999999999999999988 8999999998875433211 1112223333
Q ss_pred HHh---hhccCcEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA---VSKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .+...|++.+....+ ....+.+.+.+.|+.+++ ..++.+.+|||||+||+.|| +++|
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 321 122233333221111 123355578889999999 78899999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+....++++.+ . ..+ |+|++.||.+.+-. |...+++++...+.
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r---------yad~~i~lk~G~i~ 218 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR---------YADHLILLKDGKIV 218 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEECCeEE
Confidence 999999999866655554 4 334 89999999765531 45567777765443
No 14
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.7e-28 Score=233.71 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh------h-----c--CCCCCCC-CC-----------------
Q 021103 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQ------L-----L--EPPKGSS-GA----------------- 51 (317)
Q Consensus 3 ~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~------~-----~--~~~~~~~-~~----------------- 51 (317)
-|++++++++||+|+.+..++.++.....+++.+++.. . . .+...+. .+
T Consensus 256 ~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~ 335 (530)
T COG0488 256 QQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335 (530)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc
Confidence 47899999999999765443332222223333433311 0 0 1111110 11
Q ss_pred --CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 52 --GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 --~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
-.++++.+..|++|||+||||+||||||+.|+|...| .+|.|.++ ..+.+ ||+++......
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g-~~v~i----gyf~Q~~~~l~- 398 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVG-ETVKI----GYFDQHRDELD- 398 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeC-CceEE----EEEEehhhhcC-
Confidence 1478899999999999999999999999999999988 78999984 33332 33333221110
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
..-.++.++.+.. +......++.+|.+|+| ...+++..||||||.|+.+| |++|||||+
T Consensus 399 --------~~~t~~d~l~~~~-~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 399 --------PDKTVLEELSEGF-PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred --------ccCcHHHHHHhhC-ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 0001111111111 11125678999999999 67889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhc-ccCcEEEecCCCCh
Q 021103 198 VDEKLCYQILHEYK-IHNAEVLFREDATV 225 (317)
Q Consensus 198 LD~~~~~~~l~~l~-~~~~~i~~shd~~~ 225 (317)
||.+++..+.+.+. ..|++|+||||..+
T Consensus 470 LDi~s~~aLe~aL~~f~Gtvl~VSHDr~F 498 (530)
T COG0488 470 LDIESLEALEEALLDFEGTVLLVSHDRYF 498 (530)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 99999999988887 56799999999543
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.6e-28 Score=201.91 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=128.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|+.+-|+||+|||||||+++|.+...| +.|.|.++|.++..+....+ +..+..++.++|
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~i-P~LRR~IGvVFQ 86 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREI-PFLRRQIGVVFQ 86 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeeccccccccc-chhhheeeeEee
Confidence 578888999999999999999999999999999998 89999999998865532211 123445666666
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
...++.+ +|++.+.+.. ..+..-.+++.+.|+.+|+ +++..|.+|||||+||++|| +++||||.
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTG 166 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTG 166 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCC
Confidence 6655554 5555554433 3344556789999999999 88899999999999999999 89999999
Q ss_pred CCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
+|||+..+++++.+. ..| |+++.|||..+-
T Consensus 167 NLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 167 NLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred CCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 999998777666654 455 899999996644
No 16
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.2e-28 Score=212.52 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=142.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
..++++.++.|+.+||+|||||||||||++|+|++.| +.|.|.++|..+ .|+... ......++.++
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l--~D~~~~-~~~~R~VGfvF 83 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVL--FDVSNL-AVRDRKVGFVF 83 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEec--cchhcc-chhhcceeEEE
Confidence 3578899999999999999999999999999999998 999999999843 233221 22344567777
Q ss_pred HHHhhhcc---CcEEEEEecCC----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.+..+++ +|+|.|.+... .......++.++|+.+.+ ..+++|.+|||||+||+++| |++||
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 87777665 56777765432 123345678888999998 78999999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCe
Q 021103 194 PLTHVDEKLCYQ---ILHEYKIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNS 265 (317)
Q Consensus 194 Pt~~LD~~~~~~---~l~~l~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~ 265 (317)
|+++||.....+ .|..+... + +.+++|||.+ ..++ .+.++|+|+.-+...+...+++..+++
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l----------adrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL----------ADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh----------cceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 999999987444 45555432 4 9999999944 4444 456889999876655555555555443
No 17
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=7.1e-28 Score=194.94 Aligned_cols=169 Identities=23% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+|||||+|||||||+-.|+|+..+ ++|+|++.|+++..+|.-+.........+.++|
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 466778888999999999999999999999999988 899999999998877765554444455666677
Q ss_pred HHhhhccCcEEEEEe-----cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~-----~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+..+++.+.+..+. ...........+.++|+++|+ ++..+|.+|||||+||++|| ++.||||.
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTG 175 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTG 175 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCC
Confidence 666666655444332 221123345568899999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHH---HHHhcc-cC-cEEEecCCCChhhHHHHH
Q 021103 197 HVDEKLCYQI---LHEYKI-HN-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~-~~-~~i~~shd~~~~~~~~~~ 232 (317)
+||.++-.++ +-.++. .+ |.|++|||+.++.-|++.
T Consensus 176 NLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 176 NLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred CcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 9999874444 444443 34 899999999999888764
No 18
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=2.6e-27 Score=193.47 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=120.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
-.|++.+..|+++||+||+|||||||||.++|...| .+|.|.++|.+....+ +......+.+|
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~~------P~~RPVSmlFQ 78 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTASP------PAERPVSMLFQ 78 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcCC------cccCChhhhhh
Confidence 457788889999999999999999999999999998 8999999998865422 12333445555
Q ss_pred HHhhhccCc---EEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSD---IVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d---~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.-..+.+.+ ++-+.+... -...+++.+...+.++|+ ..++.|.+|||||+||+++| +++|||++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 544444433 333333221 123467788999999999 88999999999999999999 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~ 229 (317)
.|||....+++..+. . ..|++|+||.++ ...+.
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia 197 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIA 197 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhh
Confidence 999998776665543 2 239999999944 44443
No 19
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.94 E-value=3.5e-26 Score=214.71 Aligned_cols=248 Identities=23% Similarity=0.309 Sum_probs=167.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------C---CeeEEEecCCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGI 119 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~---g~~i~~~d~~g~ 119 (317)
+++|||.||+|||||||+|++....+++|||||++|..|.+.+ + ..+++++|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 6999999999999999999999888999999999999998763 1 256789999999
Q ss_pred cccccCCchhHHHHHhhhccCcEEEEEecCCC---------------chhhHHHHHHHHHHccc-cccccCCccccccee
Q 021103 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKK 183 (317)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~---------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~q 183 (317)
.+....+.+.+.+++..++.+|++++++|... +..+.+.+...|....+ .+.+++..+.-..+
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~- 161 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ- 161 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-
Confidence 88777777778889999999999999998862 23345566666666433 22222222211000
Q ss_pred ee--eeEeeecCCCC--CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC-hhhHHH
Q 021103 184 TG--GISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDVDK 258 (317)
Q Consensus 184 r~--~ialilDEPt~--~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~~~~~~ 258 (317)
+. .+...+-+..+ +++...+.++|++.+.. +......+.++.++..... ...+|+++|+||+|... .+.+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~-~~~~~~~~~~~~~I~~~~l--~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLP-EDPSKWTDEDLLELARELR--KISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCc-CcccCCCHHHHHHHHHhhh--hcCCCEEEEEEchhcccchHHHHH
Confidence 00 00000111122 55666677777655422 1122222223333333322 33699999999999874 333444
Q ss_pred Hhc--CCCeEEEeccccccHHH------------------------------------------------HHHHHHHHhC
Q 021103 259 LAR--QPNSVVISCNLKLNLDR------------------------------------------------LLARMWEEMG 288 (317)
Q Consensus 259 l~~--~~~~v~iSa~~~~~i~~------------------------------------------------l~~~i~~~l~ 288 (317)
+.+ +..++++||..+.++++ +.+.+++.|+
T Consensus 239 i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~L~ 318 (396)
T PRK09602 239 LKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDLLD 318 (396)
T ss_pred HHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhC
Confidence 443 36689999999998765 3377889999
Q ss_pred eeEEEecCCCCC------CCCCCCEEEecccee
Q 021103 289 LVRVYTKPQGQQ------PDFTEPVVLSVVCYI 315 (317)
Q Consensus 289 ~~~~~~~~~~~~------~~~~~p~~~~~~~~v 315 (317)
.+++||..+... ++..+|+++++|+||
T Consensus 319 li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~ 351 (396)
T PRK09602 319 MIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTA 351 (396)
T ss_pred CEEEEecCcccccccccCcccceeEEECCCCCH
Confidence 999999765333 367889999999997
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.4e-27 Score=201.15 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=118.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|+++||+|++|||||||.++|+|...| .+|.|.++|.++....-.. .......+++|
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~~~---~~~~~VQmVFQ 89 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKRAK---AFYRPVQMVFQ 89 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCccccch---hhccceeEEec
Confidence 688999999999999999999999999999999998 8999999996543211000 00111111222
Q ss_pred HHhh-hcc----CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAV-SKS----SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~-~~~----~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.... +.. .+.+.-.+.........+++.++|+.+|+ .++++|.+|||||+||++|| |++||||
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 1110 000 00000011111122234458899999999 79999999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+||.....++++.+ +. .+ +.+++|||.. ++.+||+ +.|+...-++
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR----------i~Vm~~G~iv 221 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDR----------IAVMDNGQIV 221 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhh----------eeeeeCCeEE
Confidence 999998765555554 43 33 9999999954 4556655 5566655444
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.3e-27 Score=201.62 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=127.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+..|+.|||||++||||||||++|.|+..+ ++|.|.++|.++.-.....+. ..+...++.+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-----------t~G~i~~~g~~i~~~~~k~lr-~~r~~iGmIf 87 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----------TSGEILFNGVQITKLKGKELR-KLRRDIGMIF 87 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-----------CcceEEecccchhccchHHHH-HHHHhceeEe
Confidence 3678899999999999999999999999999998777 899999999876543222121 1234455555
Q ss_pred HHHhhhccCcEEEEEecC-------------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSKSSDIVLMVLDA-------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~-------------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|.+.+.+..+++..++.+ .-...+...+.+.|+++|+ .+.++..+|||||+||++||
T Consensus 88 Q~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 88 QQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC
Confidence 655555554443322211 1123466778899999999 78899999999999999999
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChh-hHHHHHhc
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVD-DLIDVIEG 234 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~-~~~~~~~~ 234 (317)
+++|||++.|||.+...+++.++ ..+ |+|+..|+.+++ +.|+++.+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riig 220 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG 220 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheE
Confidence 88899999999999887777765 233 999999996654 55666544
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=2.8e-27 Score=201.60 Aligned_cols=168 Identities=21% Similarity=0.212 Sum_probs=124.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.++|+|++|+|||||+++|.|+..| ++|+|.+.|.++........+. .+...+..+|
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~~ls~~~~~~-ir~r~GvlFQ 92 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIPQLSEEELYE-IRKRMGVLFQ 92 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchhccCHHHHHH-HHhheeEEee
Confidence 678888899999999999999999999999999999 9999999998865433221111 2233455556
Q ss_pred HHhhhcc---CcEEEEEecCCC---chhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK---SEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~---~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
...++.. .|++.+.+..+. .....+.+..-|+.+|+ . .+++|.+|||||++|+++| +++|||
T Consensus 93 ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEP 172 (263)
T COG1127 93 QGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172 (263)
T ss_pred ccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCC
Confidence 5555444 455555443321 22234456667889999 4 8899999999999999998 899999
Q ss_pred CCCCCHHH---HHHHHHHhcc-cC-cEEEecCC-CChhhHHHHH
Q 021103 195 LTHVDEKL---CYQILHEYKI-HN-AEVLFRED-ATVDDLIDVI 232 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~-~~-~~i~~shd-~~~~~~~~~~ 232 (317)
|+||||-. +.+++..++. .+ |+++|||| .++..+||++
T Consensus 173 tsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred CCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE
Confidence 99999986 4556666653 34 99999999 6666766654
No 23
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=6.9e-27 Score=212.12 Aligned_cols=181 Identities=19% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+.+||+||||||||||+|+|+|...| ++|.|.++|.++.-- . .......++..+
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~-~----~~~~~~igy~~~ 85 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKE-P----AKVRRRIGYVPQ 85 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccC-H----HHHHhheEEEcc
Confidence 578899999999999999999999999999999998 899999999764210 0 000111111111
Q ss_pred HHh---hhccCcEEEEEecCCCc--hhhHHHHHHHHHHcccc--ccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIA---VSKSSDIVLMVLDASKS--EGHRQILTKELEAVGLR--LNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l~--~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
... .+...+++.++...... ....+.+.++|+.+++. .++++..||+|||||++|| +++||||+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 111 11112222222222221 23456789999999993 4788999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcccC--cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 197 HVDEKLCYQI---LHEYKIHN--AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~--~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
|||+.....+ ++.+...+ +++++||. .+++.+|| .++++++.-++..+..+.+
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d----------~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD----------RVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC----------EEEEEeCCEEEEeCCHHHH
Confidence 9999986554 55555443 89999999 44555454 4778888776654443333
No 24
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.4e-26 Score=197.21 Aligned_cols=175 Identities=23% Similarity=0.198 Sum_probs=121.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+.++|+|+||||||||+++|+|+..| .+|.|.++|.++.. .++.. .+...++++
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~~----~~~~vG~Vf 85 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLLE----LRQKVGLVF 85 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHHH----hhcceEEEE
Confidence 577889999999999999999999999999999998 88999999887542 11100 111122222
Q ss_pred HHHh--hhc--cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--VSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~~~--~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+. ..+-+.|.... ....+...++.++|+.+++ ..++.+..||||||||++|| +++|||
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred ECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 2111 000 01111222111 1223356678899999999 78999999999999999999 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ... + ++|++|||.+.... +...++++++.-+.
T Consensus 166 ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~---------~ad~v~vl~~G~i~ 218 (235)
T COG1122 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---------YADRVVVLDDGKIL 218 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh---------hCCEEEEEECCEEe
Confidence 9999999866665555 434 3 89999999543321 34567888876554
No 25
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=201.36 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=133.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.+.+++++.|++.+|+|-+|||||||+++|.++..| ++|.|.++|.++.-++...++.-.++...+++
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 4678899999999999999999999999999999988 89999999999887777777666677788889
Q ss_pred HHHhhhccCcEE---EEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKSSDIV---LMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~~d~i---~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.+.++++..++ .|.+... ...+..+++.++|+.+|+ +.+++|.+|||||+||+++| +++|||+
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 988888875444 4433322 234456778999999999 88999999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHh---c--ccCcEEEecCCCCh
Q 021103 196 THVDEKLCYQILHEY---K--IHNAEVLFREDATV 225 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~--~~~~~i~~shd~~~ 225 (317)
|.|||-...++-+++ + .+.|++++|||.+.
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE 227 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE 227 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 999998755544443 3 24599999999543
No 26
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=5.4e-27 Score=200.71 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=140.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++||||||||||||||+|+|.+.| ++|.|.++|.+++-.... ...+.++.+.+|
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l~p~---~iar~Gi~RTFQ 86 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGLPPH---RIARLGIARTFQ 86 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCCCHH---HHHhccceeecc
Confidence 688999999999999999999999999999999999 999999999987643321 123445556667
Q ss_pred HHhhhccCcEEEEEecC---------------C--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-----
Q 021103 133 VIAVSKSSDIVLMVLDA---------------S--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 188 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~---------------~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----- 188 (317)
....++...++..+.-+ . ......+++.++|+.+|+ ..+.+..+||+|+++++.||
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 66666655444322111 0 122345678889999999 78999999999999999988
Q ss_pred ----eeecCCCCCCCHHHHHHH---HHHhcc-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 ----FNSTLPLTHVDEKLCYQI---LHEYKI-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 ----lilDEPt~~LD~~~~~~~---l~~l~~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
|++|||.+||.+....++ +..+.. .+ +++++.||..+- .+ ...|+|++-..++.++..++
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l----------~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL----------ADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhh----------ccEEEeccCCcCcccCCHHH
Confidence 899999999999875554 555554 33 899999996543 43 45688999998887766665
Q ss_pred HhcCC
Q 021103 259 LARQP 263 (317)
Q Consensus 259 l~~~~ 263 (317)
+.+.+
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 55443
No 27
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3e-26 Score=184.93 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=125.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+.+..|++++|.||+|||||||+++++.+.+| ++|.+.|.|.++.-.+.+.++. .+.+..|
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~pea~Rq----~VsY~~Q 84 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLKPEAYRQ----QVSYCAQ 84 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccChHHHHH----HHHHHHc
Confidence 577888899999999999999999999999999998 9999999999987666554432 2334445
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
...++.+ .|+++|.........+...+.+.|+++++ .+.+++..|||||+||.+++ +++||||+.|
T Consensus 85 ~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 85 TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred CccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 4445543 57777766555444566778899999999 78999999999999999988 8999999999
Q ss_pred CHHHHH---HHHHHhc-ccC-cEEEecCCCCh
Q 021103 199 DEKLCY---QILHEYK-IHN-AEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~---~~l~~l~-~~~-~~i~~shd~~~ 225 (317)
|+.+.+ +++..+- ..+ +++.+|||.+-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 998744 4444443 334 99999999653
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-26 Score=191.95 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR- 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~- 131 (317)
.+++|..+.|+++||+|+|||||||+|++|++++.| ++|.+.++|.+... |..+++. .++..+
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~~-~p~~vrr----~IGVl~~ 82 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTVR-DPSFVRR----KIGVLFG 82 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeeccccc-ChHHHhh----hcceecC
Confidence 578999999999999999999999999999999988 99999999876532 1111110 010000
Q ss_pred --HHHhhhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 --QVIAVSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 --~~~~~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
-.+.-+...+++.++... ......+.++.++.+.+++ .+++++..+|.|+|||++|| +++|||||
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 001111111122221111 1223345677788888998 78999999999999999999 99999999
Q ss_pred CCCHHHH---HHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 197 HVDEKLC---YQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 197 ~LD~~~~---~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
|||.... .+++.+++..+ ++|+.||. ++++.+||+ ++|+.|..++-....+
T Consensus 163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr----------vivlh~Gevv~~gs~~ 218 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR----------VIVLHKGEVVLEGSIE 218 (245)
T ss_pred CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe----------EEEEecCcEEEcCCHH
Confidence 9999874 45566666545 99999999 677778875 6677777666444333
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.92 E-value=3e-26 Score=211.85 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=116.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| ++|.|.++|.++...+...+. ..+...++.+|
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~-~~r~~Ig~v~Q 89 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELT-KARRQIGMIFQ 89 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCEEEEEC
Confidence 578889999999999999999999999999999988 899999999876432211000 01122333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts 169 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 3222211 122221111 11122234567889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-C-cEEEecCCCCh-hhHHHH
Q 021103 197 HVDEKLCYQILHEYK---IH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
+||+.+...+++.+. .. + ++|++||+.+. .++||+
T Consensus 170 ~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~ 210 (343)
T TIGR02314 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC 210 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999998766655554 22 4 99999999654 355544
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=4.3e-26 Score=208.54 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++|.++..... ......++.+|
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~~-----~~~~~ig~v~q 87 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRAR-----HARQRVGVVPQ 87 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccchH-----HHHhcEEEEec
Confidence 578888889999999999999999999999999988 89999999987532110 00111122122
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... .........++.++++.+++ ..++++..||+||+||++|| +++||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 111111 1111111111 11112223456788899998 67889999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+ +.++...+ +++++||+.+ ++++||+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 9999986554 44444334 9999999954 5566654
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=4.3e-26 Score=208.45 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=110.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++.... . ......++..|
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~~q 73 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVREP-R----KVRRSIGIVPQ 73 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCH-H----HHHhhcEEecC
Confidence 578888999999999999999999999999999988 8999999997753210 0 00011111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++|+.+++ ..++++..||+||+||+++| +++||||+
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 111111 0111111111 11112233467789999999 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHH---HHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQIL---HEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l---~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+. ..+...+ ++|++||+.. +.++||+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 99999865554 4444334 9999999954 4455543
No 32
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.3e-26 Score=212.20 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=122.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|||||||||||++|+|...| ++|.|.++|.++... + ......++++|
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~v~Q 83 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNEL--E----PADRDIAMVFQ 83 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEeC
Confidence 478888989999999999999999999999999988 899999999876321 1 11223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ........+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s 163 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4333332 22332222211 112234567889999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---IH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+.+.+. .. + ++|++|||.. +..++| .++++++.-+.
T Consensus 164 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D----------~i~vl~~G~i~ 214 (356)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD----------RVVVMNGGVAE 214 (356)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEeCCEEE
Confidence 999998665555443 32 4 8999999954 444443 46677766554
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=2e-26 Score=200.78 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 87 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHIGMVFQ 87 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhceEEec
Confidence 578889999999999999999999999999999888 89999999986532211000 000011111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++++.+++ ..++++.+|||||+||+.+| +++||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 167 (216)
T TIGR00960 88 DHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTG 167 (216)
T ss_pred CccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111111 1111111110 11112234567888999999 57888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEYK---I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+. . ..++|++|||.+. .+++|
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 168 NLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999998666555443 3 3489999999653 34443
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=7.1e-26 Score=209.52 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=116.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| ++|.|.++|.++...+ .......++.+|
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~~~-----~~~~~~ig~v~q 121 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPARA-----RLARARIGVVPQ 121 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCcch-----HHHhccEEEEeC
Confidence 578889999999999999999999999999999988 8999999998753110 000111111111
Q ss_pred HHhhh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||++|| +++||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 11111 11111111100 11111223456678899998 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+.+. +...+ ++|++||+.+ ++++||+ ++++++.-+..
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~----------i~il~~G~i~~ 252 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR----------LCVLEAGRKIA 252 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE----------EEEEECCEEEE
Confidence 9999986555444 43334 9999999954 4555554 55666655443
No 35
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.92 E-value=4.4e-26 Score=211.95 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|++..|+.++|+|+||||||||+++|+|...| ++|.|.++|.++...+...+....+...++.+|
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 578899999999999999999999999999999988 899999999876533221110000223333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3333322 122222111 11122234567889999999 68999999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+.....+.+.+ .. ..|+|++|||.+ +..++| .+++++..-+
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d----------rI~vl~~G~i 208 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD----------RIVIMKAGEI 208 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEeCCEE
Confidence 99999866665554 32 349999999965 445444 4556665543
No 36
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=1.1e-25 Score=194.60 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.... .....++.+|
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-------~~~~i~~~~q 78 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKAKE-------RRKSIGYVMQ 78 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhhHH-------hhcceEEEec
Confidence 577888889999999999999999999999999888 8999999997652100 0011111111
Q ss_pred HH----hhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VI----AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~----~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.. ......+++.+...... .....+.++++.+++ ..++++..||+||+||+.+| +++||||++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 10 00111222221111111 122467888999999 67889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+. .. .++|++||+.. +.+++|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99998655544443 33 48999999954 334443
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.6e-26 Score=199.66 Aligned_cols=166 Identities=23% Similarity=0.183 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 84 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAEL-YRLRRRMGMLFQ 84 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhhH-HHHhcceEEEcc
Confidence 578899999999999999999999999999999988 89999999987543211000 000111222222
Q ss_pred HHhhhc---cCcEEEEEecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..|||||+||+.|| +++||||
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 85 SGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred CcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 111111 11111111110 1112223457788999998 56888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ .. ..++|++|||.. +..++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence 999999866555444 33 349999999965 344443
No 38
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.3e-26 Score=189.94 Aligned_cols=169 Identities=19% Similarity=0.129 Sum_probs=120.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--cCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..+.+.|||||+||||||||+++......+ |+. ...|.|.++|.+|.-. |... .+...+++
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~---~~~---r~~G~v~~~g~ni~~~~~d~~~----lRr~vGMV 93 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI---PGA---RVEGEVLLDGKNIYDPKVDVVE----LRRRVGMV 93 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC---cCc---eEEEEEEECCeeccCCCCCHHH----HHHHheee
Confidence 5677788889999999999999999999998876442 111 1679999999987432 2211 23344555
Q ss_pred HHHHhhhc--cCcEEEEEecCCC--chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 131 RQVIAVSK--SSDIVLMVLDASK--SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 131 ~~~~~~~~--~~d~i~~v~~~~~--~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+|....++ -.|++.+...... .....+.++..|....+ ++++....|||||+||++|| |+|
T Consensus 94 FQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 94 FQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred ccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 55444333 2455655544332 12334556777777766 67788899999999999998 999
Q ss_pred cCCCCCCCHHH---HHHHHHHhcccCcEEEecCCC-ChhhHHHH
Q 021103 192 TLPLTHVDEKL---CYQILHEYKIHNAEVLFREDA-TVDDLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~-~~~~~~~~ 231 (317)
|||||+|||.+ +++++.+++..-|+++|||+. ...++.|+
T Consensus 174 DEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 174 DEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred cCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHh
Confidence 99999999987 667788888666999999994 45555554
No 39
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=6.3e-26 Score=197.91 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=110.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++..|
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 89 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQ 89 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhcEEEEee
Confidence 578889999999999999999999999999999988 899999999876432210000000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. ...........+.++++.+++ ..++++.+||+||+||+++| +++||||+
T Consensus 90 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (218)
T cd03255 90 SFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTG 169 (218)
T ss_pred ccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcc
Confidence 111111 111111111 011111223467788999998 56888999999999999988 99999999
Q ss_pred CCCHHHHHHHHH---Hhcc-cC-cEEEecCCCChhhHHH
Q 021103 197 HVDEKLCYQILH---EYKI-HN-AEVLFREDATVDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~-~~-~~i~~shd~~~~~~~~ 230 (317)
+||+.....+.+ .+.. .+ ++|++||+.+..+.+|
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d 208 (218)
T cd03255 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 999998655544 4433 24 8999999965444443
No 40
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=6.5e-26 Score=196.83 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..|
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLKE----LRRKVGLVFQ 82 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHHH----HHhhceEEec
Confidence 578889999999999999999999999999999888 8999999997654211100 0011111111
Q ss_pred HHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 110 00 11111111110 01111223457788999998 57889999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ ...+ ++|++||+.. +..++|
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999866655544 3334 8999999954 333343
No 41
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.9e-26 Score=211.31 Aligned_cols=172 Identities=20% Similarity=0.188 Sum_probs=124.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| ++|.|.++|.++.- .+ ......++.+|
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~vfQ 85 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVTH--RS----IQQRDICMVFQ 85 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 468888999999999999999999999999999988 89999999987632 11 11233444445
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+++ .+++.+.+.. .......+++.++++.+++ ..++++..|||||+||++|| +++|||++
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 4444433 2333332221 1122334577889999999 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+...+. . ..++|++|||.+. ..++| .++|++..-+.
T Consensus 166 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD----------~i~vm~~G~i~ 216 (351)
T PRK11432 166 NLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD----------TVIVMNKGKIM 216 (351)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999998666555443 2 2399999999653 34444 46677766554
No 42
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.6e-24 Score=176.18 Aligned_cols=148 Identities=30% Similarity=0.442 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d~ 142 (317)
+||++|.||+|||||||+|+|....++||||+|++...|.+.+++.++.++|+||+++....... ......-.....|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 68999999999999999999999889999999999999999999999999999998765433221 12112222467999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|+...........+++
T Consensus 82 ii~VvDa~~l~r~l~l~~ql~----------------------------------------------------------- 102 (156)
T PF02421_consen 82 IIVVVDATNLERNLYLTLQLL----------------------------------------------------------- 102 (156)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999865322211111111
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
....|+++|+||+|..... +.+.+.+ ..+++++||+++.|+++|.+.|
T Consensus 103 -------------e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 103 -------------ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------------HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred -------------HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 0148999999999987542 1233332 2469999999999999999876
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=6e-26 Score=197.48 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=109.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 86 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRRRIGVVFQ 86 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhheEEEec
Confidence 578899999999999999999999999999999887 89999999987642210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++.+.+||+||+||+++| +++||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~ 166 (214)
T TIGR02673 87 DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166 (214)
T ss_pred ChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 1111110 111111100 01112234567788999998 56788999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+.. +..++|
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999866555544 33 349999999954 334443
No 44
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=1.3e-25 Score=208.70 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=123.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|||||||||||++|+|...| ++|.|.++|.++.. .+ ......++.+|
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~--~~----~~~r~ig~v~Q 83 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDITR--LP----PQKRDYGIVFQ 83 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 468888889999999999999999999999999988 89999999987632 11 11223444444
Q ss_pred HHhhhccC---cEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+++. +++.+..... .......++.++++.+++ .+++++.+|||||+||+++| +++|||++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 44443332 2222222111 122234578889999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+.+.+. . .+ ++|++|||.. +..++| .++++++..+.
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d----------~i~vl~~G~i~ 214 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD----------RIVVMNHGVIE 214 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999988666555443 2 24 8999999965 344444 46777776654
No 45
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.92 E-value=2.5e-25 Score=203.50 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++.... .......++.+|
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~v~q 84 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSRA-----RLARVAIGVVPQ 84 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECcccH-----HHHhhcEEEEec
Confidence 578889999999999999999999999999999988 8999999997652110 000111111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. ...........+.++++.+++ ..++++..|||||+||+.+| +++||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 111111 111111100 011111223456678888998 56889999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+.+.+ ...+ ++|++||+.. +.++||+
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 99999866554444 3334 9999999954 4455543
No 46
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.9e-26 Score=190.06 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=135.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+.+.+|++|||+|||||||||.|.+++|+..| ++|.|.++|.+++... ....++.+.++..|
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~lP---m~~RArlGigYLpQ 86 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKLP---MHKRARLGIGYLPQ 86 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccCC---hHHHhhcCcccccc
Confidence 578889999999999999999999999999999988 9999999999887543 23445667777777
Q ss_pred HHhhhcc---CcEEEEEecCCC----chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~----~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
..+.|+. .|++..++.... ....+..+.++|+.|.+ ..+++..+|||||++|+.|| +++|||
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 7666665 344544443322 12334457799999999 67888999999999999998 899999
Q ss_pred CCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 195 LTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
++|.||.+ ++.++..++..+ .+++..|+ .+.-++||+ .+++....+...+.
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR----------aYIi~~G~vla~G~ 222 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR----------AYIISDGKVLAEGS 222 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe----------EEEEecCeEEecCC
Confidence 99999987 566677777777 88888898 344455553 44555555544333
No 47
>PTZ00258 GTP-binding protein; Provisional
Probab=99.92 E-value=3.8e-24 Score=198.97 Aligned_cols=240 Identities=20% Similarity=0.271 Sum_probs=158.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
+.++||||.||+|||||||+|++....+++|||||++|..|.+.+.+ .++.++|+||+.....
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 56899999999999999999999988899999999999999998763 3489999999998777
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccc-eeeeeeEee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKK-KKTGGISFN 190 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~-~qr~~iali 190 (317)
.+.+...+++..++.+|++++++|... +..+.+.+...|....+ .+.++...++... .++.
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~----- 175 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKK----- 175 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccc-----
Confidence 666777888899999999999998741 23344556666665555 2333332222110 0000
Q ss_pred ecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhH--HHHHhcccceeeeeEEEecc--cCC--ChhhHHHHhc---
Q 021103 191 STLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDL--IDVIEGNRKYMKCVYVYNKI--DVI--GIDDVDKLAR--- 261 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~--~~~~~~~~~~~p~i~v~NK~--D~~--~~~~~~~l~~--- 261 (317)
++...--......+.+.+.....+ -..+++.++. +..+ .....+|+++|+|+. |+. ..+.++.+.+
T Consensus 176 --~~~~~~~~~~l~~v~~~L~~~~~~--~~~~~~~~e~~~l~~l-~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~ 250 (390)
T PTZ00258 176 --KKEEKVELDVLKKVLEWLEEGKPV--RDGDWTDKEIEILNEY-QLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVG 250 (390)
T ss_pred --hhhHHHHHHHHHHHHHHHHcCCcc--ccCCCCHHHHHHHHHh-chhhcCCEEEEEECchhhhcccchHHHHHHHHHHH
Confidence 000000001122333333321111 0112232221 1111 124579999999999 862 3333333332
Q ss_pred ---CCCeEEEeccccc-----------------------cHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 262 ---QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 262 ---~~~~v~iSa~~~~-----------------------~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...++++||..+. +++++.+.+++.|+.+++||..| +..+|+++++|+|+
T Consensus 251 ~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~----~e~raw~i~~Gsta 326 (390)
T PTZ00258 251 EKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGP----DEVRCWTIQKGTKA 326 (390)
T ss_pred hcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCC----CceeEEEeCCCCcH
Confidence 2358889986664 89999999999999999999665 34479999999996
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-25 Score=194.94 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ .. ....++..|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~--~~----~~~i~~v~q 79 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVP--PE----RRNIGMVFQ 79 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCc--hh----hccEEEEcC
Confidence 578889999999999999999999999999999888 8999999998653211 00 111122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.... .......+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 211111 11222111111 1112233457788999998 56888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALALAD 199 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcC
Confidence 999998666555443 2 238999999965 344444
No 49
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=217.08 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++ +..+.+++.... .......
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~~Q~~~-----~~l~~~~ 392 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYFAQHQL-----EFLRADE 392 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEecCcch-----hhCCccc
Confidence 578899999999999999999999999999999988 88999985 334444332100 0000000
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
.....+. .. ........+.++|+.+++ ..++++..|||||+||+.|| +++||||++||
T Consensus 393 ~~~~~~~---------~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 393 SPLQHLA---------RL-APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred hHHHHHH---------Hh-CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011010 00 111223467889999998 46789999999999999998 99999999999
Q ss_pred HHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 200 EKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 200 ~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+.....+.+.+.. .+++|++|||.. +..+|++
T Consensus 463 ~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 463 LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCE
Confidence 9987777666653 459999999954 4444443
No 50
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.9e-25 Score=189.31 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--cCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--d~~g~~~~~~~~~~~~ 130 (317)
.+++|.+++|++.|++|+|||||||.|++|+|.+.| ++|.|.|+|.++... |..||.+..
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~~~~rIGyLPEE------- 80 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQEIKNRIGYLPEE------- 80 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhhhhhhcccChhh-------
Confidence 688999999999999999999999999999999988 899999999876432 334554322
Q ss_pred HHHHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 131 RQVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
..+++. .|.+.|.. .+....+....+..+|+++++ ...+++.+||.|++|++.+. +++|||
T Consensus 81 ---RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 ---RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred ---hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 111111 12222222 223334456678899999999 78889999999999999764 999999
Q ss_pred CCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhc
Q 021103 195 LTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~ 234 (317)
+|||||-+ .++.+.+++..| |+|++||. ..++++||.+..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence 99999976 456666777666 99999999 668899998643
No 51
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=2.2e-25 Score=207.28 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+||||||||||+++|+|...| ++|.|.++|.++...+ ......++.+|
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~i~~v~Q 81 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLH------ARDRKVGFVFQ 81 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC------HHHCCEEEEec
Confidence 478899999999999999999999999999999988 8999999998763211 11122333334
Q ss_pred HHhhhcc---CcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS---SDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+.. .+++.+.... .......+.+.++|+.+++ ..++++.+|||||+||++|| +++|
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3322222 2223222211 1112234567889999999 67899999999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ... + ++|++|||.. +..++| .++++++..+.
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D----------ri~vl~~G~i~ 216 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD----------RVVVMSQGNIE 216 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866555444 332 4 9999999965 344443 46677766554
No 52
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=9.6e-26 Score=196.08 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. ....++..+.........
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHHHHHhheEEeccccccccCCC
Confidence 578888889999999999999999999999999888 89999999865310 000111111100000000
Q ss_pred HHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+++.+.... .......+.+.++++.+++ ..++++.+||+||+||+++| +++|||
T Consensus 85 -----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 85 -----ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred -----CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0001111110000 0112234567888999999 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+ ... .++|++||+.+ +.+++|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 9999999866555544 323 48999999965 344444
No 53
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=2.1e-25 Score=207.73 Aligned_cols=173 Identities=20% Similarity=0.178 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee--EEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~--G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+|||||||||||++|+|...| .+ |.|.++|.++. +.+ ......++.
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~--~~~----~~~r~ig~v 84 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLT--HAP----PHKRGLALL 84 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECC--CCC----HHHCCEEEE
Confidence 578888889999999999999999999999999988 78 99999998753 111 111233334
Q ss_pred HHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+|....+.. .+++.+..... .......++.++++.+++ ..++++.+|||||+||+++| +++|||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 443333322 22222222111 112234567889999999 68899999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc--C-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCC
Q 021103 195 LTHVDEKLCYQILHEY---KIH--N-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~--~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|++||+.....+.+.+ ... + ++|++|||.+. ..++ ..+++++...+..
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~----------dri~vl~~G~i~~ 219 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA----------DKAGIMKDGRLAA 219 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEE
Confidence 9999999866655544 332 4 89999999553 4444 3467777766553
No 54
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-24 Score=179.16 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=119.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+|+.+||+|||||||||||+.|+|...| .+|.+.++|.++..+....+ ..
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~~~~~l-----------A~ 75 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSWPPEEL-----------AR 75 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhCCHHHH-----------HH
Confidence 578889999999999999999999999999999988 89999999987543211000 01
Q ss_pred HHhhhccCcEE----------EEEecC----CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 133 VIAVSKSSDIV----------LMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 133 ~~~~~~~~d~i----------~~v~~~----~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
....++....+ .+..-. ..+.++.+.+++.|++.++ ...+.+..|||||+||+.+|
T Consensus 76 ~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~ 155 (259)
T COG4559 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWP 155 (259)
T ss_pred HhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccC
Confidence 11222222222 111111 1223455568889999998 78888999999999999988
Q ss_pred -------eeecCCCCCCCHHHHHH---HHHHhccc-CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 -------FNSTLPLTHVDEKLCYQ---ILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 -------lilDEPt~~LD~~~~~~---~l~~l~~~-~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||+.||+..... +.+++... ++++.+-||..++.. |...|+++.+.-+.
T Consensus 156 ~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~---------YaDrivll~~Grv~ 220 (259)
T COG4559 156 PVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ---------YADRIVLLHQGRVI 220 (259)
T ss_pred CCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHH---------hhheeeeeeCCeEe
Confidence 79999999999987544 45555544 499999999776542 44556666655443
No 55
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.8e-25 Score=199.85 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+........++.+|
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 578889999999999999999999999999999988 889999999875422110000000011111122
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++.+..||+||+||++|| +++||||+
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~ 189 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111111 111111110 01112223457788999999 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+. +.. ..++|++||+.. +.+++|
T Consensus 190 ~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 9999986655554 432 349999999954 344443
No 56
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=1.5e-25 Score=197.81 Aligned_cols=174 Identities=21% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~q 82 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHEI---ARLGIGRTFQ 82 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHHH---HhcCEEEEec
Confidence 577888889999999999999999999999999887 88999999876532110000 0001111111
Q ss_pred HHhhhcc---CcEEEEEecCC------------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 133 VIAVSKS---SDIVLMVLDAS------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~------------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
....+.. .+++.+..... ........+.++++.+++ ..++++.+||+||+||+.+|
T Consensus 83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDP 162 (236)
T ss_pred ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1111110 11111100000 011223457788999998 56888999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+++||||++||+.....+.+.+ ... .++|++||+.+. ..++| .++++++.-+
T Consensus 163 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d----------~i~~l~~G~i 221 (236)
T cd03219 163 KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD----------RVTVLDQGRV 221 (236)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEeCCEE
Confidence 9999999999999866554444 333 389999999654 34343 3556665443
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=1.2e-25 Score=196.43 Aligned_cols=163 Identities=21% Similarity=0.240 Sum_probs=108.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+............++.+|
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 90 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQ 90 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEec
Confidence 578889999999999999999999999999999988 899999999875332110000000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 91 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 170 (221)
T TIGR02211 91 FHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTG 170 (221)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 111111 111111100 001112223456788999999 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~~ 226 (317)
+||+.....+.+.+. . ..++|++||+....
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999998665555443 2 34899999996543
No 58
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.8e-25 Score=210.25 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=114.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++..|++++|+|+||||||||+++|+|+..| .+|.|.++|.++...+...+........++.+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 3678899999999999999999999999999999988 89999999987643221100000011122222
Q ss_pred HHHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+.. .+++.+... ........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 22211111 122211111 11122234567788999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHH
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
++||+.....+.+.+ .. ..++|++|||.+ +.+++|+
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE
Confidence 999999866555544 32 238999999954 3444443
No 59
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=4.4e-25 Score=205.84 Aligned_cols=165 Identities=21% Similarity=0.237 Sum_probs=111.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc-cccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~-~~~~~~~~~~~~~ 132 (317)
++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.... .+. ........++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEEec
Confidence 67888899999999999999999999999999988 8999999998763211 000 0001112222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+.............+.++++.+++ ..++++.+|||||+||+++| +++||||++|
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 2211111 12221111111112223457888999999 67889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ ... + ++|++||+.+ +..++|
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999866555444 332 3 8999999954 334443
No 60
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-25 Score=207.15 Aligned_cols=171 Identities=21% Similarity=0.259 Sum_probs=118.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| ++|.|.++|.++...+ . .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~~--~----~~~~i~~v~Q 82 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDVP--P----AERGVGMVFQ 82 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCCC--H----hHCCEEEEeC
Confidence 478888889999999999999999999999999988 8999999998753211 0 1112233333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2222221 222222111 11112234567888999999 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+.....+.+. +.. ..++|++|||.+ +..++| .+++++..-+
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d----------~i~vl~~G~i 212 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD----------KIVVLDAGRV 212 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC----------EEEEEECCEE
Confidence 9999986655444 433 238999999954 444444 3556665543
No 61
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.91 E-value=3.4e-25 Score=202.34 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++|.++.. +.. ......++.++
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~~~----~~~~~ig~~~q 82 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-NPK----EVQRNIGYLPE 82 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-ChH----HHHhceEEecC
Confidence 578889999999999999999999999999999888 89999999976532 100 00111111111
Q ss_pred HHhhhc---cCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+..... ......+.+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 111111 111111111111 112223467888999999 57889999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+.+ .+....++|++||+.+ ++++||+ ++++++..+..
T Consensus 163 gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~----------i~~l~~G~i~~ 212 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR----------VIIINKGKIVA 212 (301)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE----------EEEEECCEEEE
Confidence 999998655544 4444359999999954 6666654 55666655543
No 62
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-25 Score=206.09 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+............++.+|
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 368888899999999999999999999999999988 899999999775321100000011122233333
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+... ......+.++++.+++ ..++++.+|||||+||++|| +++||||++|
T Consensus 84 ~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred CcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 2222221 122211111 1223467788999999 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+.+.+ ... + ++|++|||.+ +..++| .++++++.-+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d----------~i~~l~~G~i~ 208 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD----------RVVVLEQGKVK 208 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC----------EEEEEeCCEEE
Confidence 999866555444 332 3 8999999954 444444 35566655443
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=3.1e-25 Score=191.81 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..+.............++..+
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 83 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ 83 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence 578888889999999999999999999999999887 899999999875321100000000111111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~ 163 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTG 163 (206)
T ss_pred chhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 1111111 111111000 01112234567788999998 67888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-CcEEEecCCCChhhHH
Q 021103 197 HVDEKLCYQILHEYK---IH-NAEVLFREDATVDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~ 229 (317)
+||+.....+.+.+. .. .++|++||+....+.+
T Consensus 164 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 164 SLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 999998666655543 33 4899999997654433
No 64
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.1e-25 Score=206.99 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ...+...++.+|
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~ig~v~q 89 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKEL-RKARRQIGMIFQ 89 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHH-HHHhcCEEEEeC
Confidence 578899999999999999999999999999999988 89999999987642211000 000111222222
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts 169 (343)
T PRK11153 90 HFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 111111 1111111111 11112223467788999999 57888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
+||+.....+++.+ ... + ++|++||+.+. .++||+
T Consensus 170 ~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999866555544 332 4 89999999553 444443
No 65
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=3.1e-25 Score=207.43 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=122.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|||||||||||++|+|...| .+|.|.++|.++.. .+ ......++.+|
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~vfQ 93 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDITH--VP----AENRHVNTVFQ 93 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEec
Confidence 468888899999999999999999999999999988 89999999987632 11 11223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ........+.++++.+++ ..++++.+|||||+||++|| +++|||++
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4433333 23332222111 112224467888999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+...+. . .+ ++|++|||.. +..++| .+++++..-+.
T Consensus 174 ~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD----------ri~vl~~G~i~ 224 (375)
T PRK09452 174 ALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD----------RIVVMRDGRIE 224 (375)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999998666555543 2 24 8999999954 344443 46666665444
No 66
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.4e-25 Score=193.59 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. .+ .......++.+|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~--~~---~~~~~~i~~~~q 80 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR--EP---REVRRRIGIVFQ 80 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc--Ch---HHHhhcEEEecC
Confidence 578888889999999999999999999999999887 89999999876431 00 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111100 111111000 01112234467888999999 56888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ ... + ++|++||+.. +..+++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999866655544 332 4 8999999955 344443
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=5.5e-25 Score=191.24 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+.+. .......++..+
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 83 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKNI--NELRQKVGMVFQ 83 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchhH--HHHHhcceEEec
Confidence 577888899999999999999999999999999988 8999999998653110000 000111111111
Q ss_pred HHhhhc---cCcEEEEE---ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMV---LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+. ............+.++++.+++ ..++++.+||+||+||++++ +++||||
T Consensus 84 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 84 QFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111111 11111111 0111112233457788899998 57889999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhccc-CcEEEecCCCCh-hhHHH
Q 021103 196 THVDEKLCYQILH---EYKIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~-~~~~~ 230 (317)
++||+.....+.+ .+... .++|++||+... .+++|
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 9999988655544 44333 489999999553 34443
No 68
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.5e-25 Score=201.01 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.....+.-........++..
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~ 91 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKVSLVF 91 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhceEEEE
Confidence 3678899999999999999999999999999999988 89999999987632110000000011111111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+.+.+... ..........+.++++.+++ ..++++..||+||+||++|| +++||
T Consensus 92 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE 171 (287)
T PRK13641 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171 (287)
T ss_pred eChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 110 00 011111111100 11122233467788999998 35788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+.+. +...+ ++|++||+.. +.++||+
T Consensus 172 Pt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 9999999986555444 43334 9999999955 4455543
No 69
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.4e-25 Score=194.73 Aligned_cols=171 Identities=21% Similarity=0.217 Sum_probs=114.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .....++..|
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~v~q 81 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPV------QERNVGFVFQ 81 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------cccceEEEec
Confidence 578888889999999999999999999999999887 89999999976532110 0011111122
Q ss_pred HHhhh---ccCcEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ......+.+.++++.+++ ..++++.+||+||+||+++| +++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11111 1111121111000 111223456788999998 57888999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILH---EYKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+ .+.. ..++|++||+.+ +...+| .++++++..+
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d----------~i~~l~~G~i 215 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD----------RVVVMNKGRI 215 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCeE
Confidence 9999999998665544 4433 238999999965 334333 4556665443
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-25 Score=196.02 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++..|
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 94 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ 94 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccEEEEec
Confidence 578889999999999999999999999999999887 899999999876432110000000011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+.. .........+.+.++++.+++ ..++.+.+||+||+||+++| +++||||+
T Consensus 95 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 174 (233)
T PRK11629 95 FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTG 174 (233)
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1111110 11111100 011122233467788999999 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~~ 226 (317)
+||+.....+.+.+ .. .+ ++|++||+.+..
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 175 NLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999866555444 32 34 899999996543
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.2e-25 Score=192.99 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+...
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~------ 83 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGPGPDRGYVFQQDA------ 83 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccccCcEEEEecccc------
Confidence 578888999999999999999999999999999887 899999998765311 00111111100
Q ss_pred HHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
........+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 84 -~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 84 -LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred -cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 0000000111111100 01112234567788999999 56888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc----c-cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEYK----I-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~----~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 9998666555443 2 248999999965 445444
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=2.5e-25 Score=195.49 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++.+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 94 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEEEEE
Confidence 3578889999999999999999999999999999988 89999999986643211000000000111111
Q ss_pred HHHhhhc---cCcEEEEE--ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSK---SSDIVLMV--LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v--~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+. ..+.+.+. ..........+.+.++++.+++ ..++.+..||+||+||+.+| +++||||
T Consensus 95 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred cccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11111110 0111112234567888999998 56788999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhh
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDATVDD 227 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~ 227 (317)
++||+.....+.+.+ .. ..++|++||+....+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999998865554444 32 348999999965433
No 73
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=8.7e-25 Score=180.88 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=124.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|...++||||||||||||.+++++... ++|.|.++|.++.-.++..+. .......|
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~~s~~LA----k~lSILkQ 82 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTSTPSKELA----KKLSILKQ 82 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccCChHHHH----HHHHHHHh
Confidence 567888888999999999999999999999999988 899999999887543322111 01111111
Q ss_pred H---HhhhccCcEEEEEecCC----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 V---IAVSKSSDIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~---~~~~~~~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
. ..-+...|++-|....+ -..++...+.++++.+++ ..+++..+|||||+||..+| +++|||
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 1 01112233333332221 234466778899999998 67888999999999999887 899999
Q ss_pred CCCCCHHHHHHHHHHhc----c-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK----I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
.|+||.....++++.++ . +.|++++-||..++.. |...|+++-+.-++
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~---------YsD~IVAlK~G~vv 215 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC---------YSDHIVALKNGKVV 215 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh---------hhhheeeecCCEEE
Confidence 99999998666555554 2 3499999999887752 55667776665544
No 74
>COG2262 HflX GTPases [General function prediction only]
Probab=99.91 E-value=4.9e-23 Score=188.02 Aligned_cols=162 Identities=31% Similarity=0.363 Sum_probs=127.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCch-hHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~ 139 (317)
-..|+|+|++|||||||||+|+|....+.+..|+|++|+.-.+.+. |.++.+.||.||+...+...- -++..+.....
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~ 271 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKE 271 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999999999999987 688999999999987665533 34456667778
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|++++.... .+ +...++|.++..
T Consensus 272 aDlllhVVDaSdp~~~~-~~-----------------------------------------~~v~~vL~el~~------- 302 (411)
T COG2262 272 ADLLLHVVDASDPEILE-KL-----------------------------------------EAVEDVLAEIGA------- 302 (411)
T ss_pred CCEEEEEeecCChhHHH-HH-----------------------------------------HHHHHHHHHcCC-------
Confidence 99999999998763221 11 223344444431
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHHhcC-CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLARQ-PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
...|+|+|+||+|++..+. ...+... +..+++||++|.|++.|.+.|.+.+..
T Consensus 303 -----------------~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 303 -----------------DEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred -----------------CCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1379999999999887665 3344433 358999999999999999999998863
No 75
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=3.3e-24 Score=175.01 Aligned_cols=188 Identities=17% Similarity=0.189 Sum_probs=132.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccc--------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGA-------- 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~-------- 123 (317)
.++|+....|..|.|||-+||||||+|+||.-+..| ..|.|.++|..+... |..|-....
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 467788888999999999999999999999988888 899999999988654 333322111
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
+...++++|.+.+..+..++..++.+ .......++++.+|.++|+ ..+.+|..|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 12334455554444444333333222 1233455678899999999 78899999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++|||||.|||+.+-++|+-+ ...+ |.+++||+..+++-+. ..++.+.+.-+...+..+.+.
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs---------s~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS---------SHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh---------hheEEeecceecccCChHHHh
Confidence 8899999999999866655544 4444 9999999988776432 234455555444333333333
No 76
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=2.4e-25 Score=193.68 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~q 85 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRAI-PYLRRKIGVVFQ 85 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHH-HHHHHheEEEec
Confidence 578899999999999999999999999999999887 89999999986532210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 86 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 165 (214)
T cd03292 86 DFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165 (214)
T ss_pred CchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1111111 111111110 01111223457788999998 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-CcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ... .++|++||+...
T Consensus 166 ~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 166 NLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999866555444 333 489999999543
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=4.5e-25 Score=195.66 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 86 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKL-RKLRRRIGMIFQ 86 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHH-HHHHhheEEEcC
Confidence 578889999999999999999999999999999888 89999999987542210000 000011111111
Q ss_pred HHhhh---ccCcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS---KSSDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||++||
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 87 HYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred CCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 11111111100 00112234567788999998 56888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+ .+.. ..++|++||+... .+++|
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999999999998655544 4432 2389999999654 34443
No 78
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.91 E-value=7e-25 Score=190.62 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+. .....++.+|
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~------~~~~i~~~~q 79 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPP------KDRDIAMVFQ 79 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------ccceEEEEec
Confidence 578889999999999999999999999999999888 89999999987532111 0011122122
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111 111111110 11122233457788999998 57889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999866655544 32 349999999954 344443
No 79
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=3.2e-25 Score=193.99 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~~~q 86 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREV-PFLRRQIGMIFQ 86 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHH-HHHHhheEEEec
Confidence 578889999999999999999999999999999987 89999999987642211000 000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. ...........+.++++.+++ ..++.+.+||+||+||++++ +++||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (222)
T PRK10908 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTG 166 (222)
T ss_pred CccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111100 011111110 011112223456788999998 56888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-CcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ... .++|++||+...
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 167 NLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99998865554444 333 489999999553
No 80
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=5.5e-25 Score=207.01 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|++++|+|||||||||||++|+|...| .+|.|.++|.++...+... .....++..|
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~~----~~~~ig~v~q 84 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSARA----ASRRVASVPQ 84 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHHH----HhcceEEEcc
Confidence 578889999999999999999999999999999988 8999999998754221100 0111121111
Q ss_pred HHhh---hccCcEEEEEec----CCC--chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAV---SKSSDIVLMVLD----ASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~----~~~--~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.... +...+++.+... ... .....+.+.++|+.+++ ..++++.+||+||+||+.|| +++|
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1110 111122211110 001 22345568889999999 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHH---HHHHhcccC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQ---ILHEYKIHN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~---~l~~l~~~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+....+ +++.+...+ ++|++|||.... ++|| .++++++.-+
T Consensus 165 EPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad----------rii~l~~G~i 217 (402)
T PRK09536 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD----------ELVLLADGRV 217 (402)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC----------EEEEEECCEE
Confidence 9999999987554 455554334 999999995543 5444 4556665543
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=1.2e-24 Score=193.67 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc----cccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI----IEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~----~~~~~~~~~ 128 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.... ........+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhhHHHHhhhhEE
Confidence 578888889999999999999999999999999887 89999999987642210000 000001111
Q ss_pred hHHHHHhhhc---cCcEEEEE---ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIAVSK---SSDIVLMV---LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~~~~---~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+..|....+. ..+.+.+. ..........+.+.++++.+++ ..++++.+||+||+||+.+| +++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 1111111111 11111110 0111111223456788899998 56788999999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHH---Hhcc-cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~---~l~~-~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+ .+.. ..++|++||+... .+++| .+++++...+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d----------~i~~l~~G~i~ 223 (250)
T PRK11264 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD----------RAIFMDQGRIV 223 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 99999999998665554 4433 3499999999543 34443 45666655443
No 82
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=7.4e-25 Score=187.16 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. +.... .......++..|
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~~-~~~~~~i~~~~q 75 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDY-SRKGL-LERRQRVGLVFQ 75 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEccc-cccch-HHHHhhEEEEec
Confidence 578889999999999999999999999999999887 89999999987631 11000 000111111111
Q ss_pred HHh--hh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--VS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||
T Consensus 76 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 76 DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 110 00 11111111100 01111223456788889998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhc---ccC-cEEEecCCCC
Q 021103 196 THVDEKLCYQILHEYK---IHN-AEVLFREDAT 224 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~ 224 (317)
++||+.....+.+.+. ..+ ++|++||+.+
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999998666555443 334 8999999965
No 83
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.91 E-value=9.1e-25 Score=192.17 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=114.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .++..+...-.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q~~~l~---- 66 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPDRMVVFQNYSLL---- 66 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChhheEEecCcccC----
Confidence 367888889999999999999999999999999988 89999999976532110 12211110000
Q ss_pred HHHhhhccCcEEEEEe----cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 QVIAVSKSSDIVLMVL----DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~----~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
......+++.+.. .........+.+.++++.+++ ..++++..|||||+||+.++ +++||||+
T Consensus 67 ---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 143 (230)
T TIGR01184 67 ---PWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143 (230)
T ss_pred ---CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 0000011111100 011112233457788999999 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++||+.. +.+++| .++++++..+.
T Consensus 144 gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d----------~v~~l~~G~i~ 194 (230)
T TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSD----------RVVMLTNGPAA 194 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEeCCcEe
Confidence 999998666655443 2 238999999955 344443 35566655443
No 84
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.2e-25 Score=194.06 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 85 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKAL-RQLRRQIGMIFQ 85 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhHH-HHHHhccEEEcc
Confidence 578889999999999999999999999999999887 88999999987643220000 000011111111
Q ss_pred HHhhhc---cCcEEEEEe----------cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK---SSDIVLMVL----------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~----------~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .........+.+.++++.+++ ..++++.+||+||+||+++|
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 165 (241)
T cd03256 86 QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165 (241)
T ss_pred cCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 111111 011111000 000112234467788999998 57888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+ .. ..++|++||+.+..
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999866554444 32 34899999996543
No 85
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8e-25 Score=204.93 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=122.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| .+|.|.++|.++.. .+ ......++.+|
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~--~~----~~~r~ig~vfQ 98 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLSH--VP----PYQRPINMMFQ 98 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 478889999999999999999999999999999988 89999999987531 11 12223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ......+++.++++.+++ ..++++.+|||||+||++|| +++|||++
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4433433 23332222211 112234567888999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---c-ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEY---K-IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+...+ . ..+ ++|++|||.+ +..++| .+++++..-+.
T Consensus 179 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laD----------ri~vl~~G~i~ 229 (377)
T PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG----------RIAIMNRGKFV 229 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEeCCEEE
Confidence 99999865554333 2 234 9999999955 345444 45666665443
No 86
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.3e-25 Score=199.00 Aligned_cols=178 Identities=22% Similarity=0.196 Sum_probs=117.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
-.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ... .......+++
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v 89 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEI-KPVRKKVGVV 89 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccH-HHHHhhEEEE
Confidence 3578899999999999999999999999999999988 89999999987632110 000 0001112222
Q ss_pred HHHH--hhh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 131 RQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 131 ~~~~--~~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+|.. ..+ ...+.+.+.... .........+.++|+.+++ ..++.+..||+||+||++|| +++|
T Consensus 90 ~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD 169 (288)
T PRK13643 90 FQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169 (288)
T ss_pred ecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2211 000 111111111110 1112233457788999998 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ ...+ ++|++|||... .+++| .++++++.-+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d----------ri~~l~~G~i~ 223 (288)
T PRK13643 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD----------YVYLLEKGHII 223 (288)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866655444 3334 99999999653 34443 46666665444
No 87
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=7.1e-25 Score=193.05 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 82 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHKR---ARLGIGYLPQ 82 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhHH---HhccEEEecC
Confidence 577888889999999999999999999999999988 89999999976532211000 0011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++.+..||+||+||+.++ +++||||+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred CccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1111111 111111000 01111223456788899998 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---HhcccC-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILH---EYKIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+ .+...+ ++|++||+.+ +.++++
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999998665544 444334 8999999964 555443
No 88
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.8e-25 Score=200.00 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=116.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-------------ecCCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-------------LDLPGI 119 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-------------~d~~g~ 119 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. ++..+.
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 92 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKT 92 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceecccccccccccccccccccccc
Confidence 578899999999999999999999999999999988 88999998765421 010000
Q ss_pred -------cccccCCchhHHHHH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCccccccee
Q 021103 120 -------IEGASEGKGRGRQVI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKK 183 (317)
Q Consensus 120 -------~~~~~~~~~~~~~~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~q 183 (317)
........++++|.. ..+ ...+.+.+... .........++.++++.+++ ..++++..|||||+|
T Consensus 93 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq 172 (305)
T PRK13651 93 RFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKR 172 (305)
T ss_pred cccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 000111122222211 000 00111111111 11122234567888999998 368899999999999
Q ss_pred eeeeE---------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEeccc
Q 021103 184 TGGIS---------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKID 249 (317)
Q Consensus 184 r~~ia---------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D 249 (317)
|++|| +++||||++||+.....+++.+ ...+ ++|++|||.+ +.+.+| .+++++...
T Consensus 173 rvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad----------rv~vl~~G~ 242 (305)
T PRK13651 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK----------RTIFFKDGK 242 (305)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC----------EEEEEECCE
Confidence 99998 9999999999999866555544 3334 9999999965 445444 456666654
Q ss_pred CC
Q 021103 250 VI 251 (317)
Q Consensus 250 ~~ 251 (317)
+.
T Consensus 243 i~ 244 (305)
T PRK13651 243 II 244 (305)
T ss_pred EE
Confidence 43
No 89
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.5e-24 Score=188.28 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .....++..|
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~q 77 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP------ADRPVSMLFQ 77 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH------hHccEEEEec
Confidence 378899999999999999999999999999999988 89999999986532110 0011122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 111111 11222211110 1011234467788999998 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+++.+. . ..++|++||+.+ +.+++|
T Consensus 158 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhC
Confidence 999998666555543 2 238999999965 344444
No 90
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=5e-25 Score=192.21 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=110.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. . + .......++.+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~-~---~~~~~~i~~~~ 84 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-E-P---AEARRRLGFVS 84 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-C-H---HHHHhhEEEec
Confidence 3578889899999999999999999999999999888 89999999987642 1 0 00011111111
Q ss_pred HHHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+.. .+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111111 1111111100 1112234567788999999 57889999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ ... .++|++||+.. +.+++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 165 TGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 999999865554444 333 49999999964 344443
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=8.6e-25 Score=191.00 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++.... .......++..|
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~v~q 82 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTDR-----KAARQSLGYCPQ 82 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccch-----HHHhhhEEEecC
Confidence 578889999999999999999999999999999888 8999999998753210 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 83 FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred cCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 1111100 111111100 01111223457788999998 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---ccCcEEEecCCCChh-hHHH
Q 021103 197 HVDEKLCYQILHEYK---IHNAEVLFREDATVD-DLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~-~~~~ 230 (317)
+||+.....+++.+. ...++|++||+.+.. +.+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 163 GLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 999998666655553 334899999996543 4443
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=5.7e-25 Score=196.32 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... ..|+..+...-
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q~~~~----- 81 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPGAERGVVFQNEGL----- 81 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCCcEEEEeCCCcc-----
Confidence 578899999999999999999999999999999988 8999999987652110 01221111000
Q ss_pred HHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.......+.+.+... ..........+.++++.+++ ..++++..|||||+||+.+| +++||||++|
T Consensus 82 --~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 82 --LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred --CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 000000111111000 11112233467888999998 56788999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+. . ..++|++|||.+. ..++|
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9998665555443 2 3489999999653 44444
No 93
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=1e-24 Score=196.18 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+. ......++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q 91 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRLY-TVRKRMSMLFQ 91 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhHH-HHhhcEEEEec
Confidence 578899999999999999999999999999999988 889999999765322110000 00011111111
Q ss_pred HHhhhcc---CcEEEEEec---CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+.. .+++.+... ..........+.+.|+.+++ ..++++..|||||+||+.|| +++||||
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111111 111111100 01111123456778899999 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHH---hcc--cCcEEEecCCC-ChhhHHH
Q 021103 196 THVDEKLCYQILHE---YKI--HNAEVLFREDA-TVDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~---l~~--~~~~i~~shd~-~~~~~~~ 230 (317)
++||+.....+++. +.. ..++|++|||. .+.++++
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 172 VGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhC
Confidence 99999986655444 433 24899999994 4445444
No 94
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.7e-25 Score=197.34 Aligned_cols=174 Identities=17% Similarity=0.130 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++....... .....++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~v~q 88 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVWD----IRHKIGMVFQ 88 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHH----HHhhceEEEc
Confidence 578899999999999999999999999999999988 8999999998763211000 0111222222
Q ss_pred HHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+... ..........+.++++.+++ ..++.+..||+||+||++|| +++||||
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 89 NPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred ChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 110 11 11122222111 11122234567889999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++.+ ... + ++|++||+......+ ..+++++..-+.
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~----------dri~~l~~G~i~ 219 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALS----------DRVLVMKNGQVE 219 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC----------CEEEEEECCEEE
Confidence 999999866665544 332 4 999999996543333 345666655443
No 95
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9e-25 Score=192.55 Aligned_cols=166 Identities=21% Similarity=0.228 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+..... ......++.+|
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~~q 89 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKELR-KARRRIGMIFQ 89 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHHH-HHHhheEEEcc
Confidence 577888999999999999999999999999999988 899999999876422100000 00011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 1111110 111111100 11111223457788999998 56788999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+ .+.. ..++|++||+.+. .+++|
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999998655544 4433 2389999999543 34443
No 96
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=4.8e-24 Score=213.11 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=107.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCC--CccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLP--GIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~--g~~~~~~~~~~ 128 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| ++|.|.+ |.+ +.+++.. .+.. ..
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~-~~~~~i~y~~q~~~~l~~----~~- 398 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHC-GTKLEVAYFDQHRAELDP----EK- 398 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEE-CCCcEEEEEeCcccccCC----CC-
Confidence 578899999999999999999999999999999888 8899998 433 3333211 0100 00
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+.+.+... .. .... . .....+.++|+.|++ ..++++..|||||+||+.+| +++||||+
T Consensus 399 tv~e~l~~~--~~----~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 399 TVMDNLAEG--KQ----EVMV-N--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred CHHHHHHhh--cc----cccc-c--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 011111100 00 0000 1 112357788999988 46889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+||+.+...+.+.+.. .+++|++|||.. +..+|+.
T Consensus 470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCE
Confidence 9999997777776664 459999999954 4455543
No 97
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=6.7e-25 Score=191.91 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=106.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 82 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPHER---ARAGIGYVPE 82 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHHHH---HhcCeEEecc
Confidence 578888999999999999999999999999999988 89999999976532111000 0111222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHc-cc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~-~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+.+.+.............+.++++.+ ++ ..++++..||+||+||+.+| +++||||++
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 162 (222)
T cd03224 83 GRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162 (222)
T ss_pred ccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 1111111 111111100011111223455666766 35 56888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+++.+. .. .++|++||+.. +.++++
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 163 LAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD 200 (222)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcc
Confidence 99998666555543 33 49999999965 344443
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.7e-25 Score=190.35 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~~ 130 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. ....++..+...-..
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~-- 83 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDIAARNRIGYLPEERGLYP-- 83 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhHHHHccEEEeccCCcCCc--
Confidence 567888899999999999999999999999999887 89999999875421 000111111100000
Q ss_pred HHHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.....+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||++
T Consensus 84 -----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 84 -----KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred -----CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 0000111100000 01112234467788999998 56788999999999999988 899999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+. .. .+++++||+.. +.+++|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 99998666555543 33 48999999955 344454
No 99
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.2e-24 Score=189.24 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=108.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~~~ 132 (317)
++++++.+ ++++|+|+||||||||+++|+|...| .+|.+.++|.++...... .. .......++..|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~~i~~~~q 82 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINL-PPQQRKIGLVFQ 82 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhh-hhHhhcEEEEec
Confidence 88899999 99999999999999999999999988 899999998765311000 00 000011111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+.............+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 111111 011111111111112234467788999998 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLAD 200 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcC
Confidence 999866655544 33 238999999954 444443
No 100
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=6.1e-25 Score=205.26 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee----EEEecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK----IQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~----i~~~d~~g~~~~~~~~~~ 128 (317)
.+++|++..|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +...+...+........+
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 678889999999999999999999999999999988 89999999853 211110000000011233
Q ss_pred hHHHHHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 129 RGRQVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+.+|....+.. .+++.+... ..........+.++++.+++ ..++++.+|||||+||++|| +++|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 33332222221 122211111 11122234567888999999 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~~ 231 (317)
|||++||+.....+.+.+ .. ..++|++|||.+. .+++|+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr 234 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNR 234 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999866665554 33 3499999999654 455443
No 101
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.90 E-value=9.8e-25 Score=194.80 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+...
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~------ 91 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAEAREDTRLMFQDAR------ 91 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHHhhCceEEEecCcc------
Confidence 578899999999999999999999999999999988 889999988653110 00111111100
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
........+++.+... . .....+.++++.+++ ..++++..|||||+||+.++ +++||||++||+
T Consensus 92 -l~~~~tv~enl~~~~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 -LLPWKKVIDNVGLGLK---G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred -CCCCCcHHHHHHhccc---c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 0000001111111110 1 123457788999999 57888999999999999998 999999999999
Q ss_pred HHHHHHHHHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
.....+.+.+. . ..++|++|||... .+++|
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d 202 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD 202 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 98665544442 2 3499999999653 44444
No 102
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.2e-25 Score=189.94 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+| +++|+|+||||||||+++|+|...| .+|.|.++|.++...+ . ......++.+|
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~~q 79 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-Q----KLRRRIGYLPQ 79 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-H----HHHhheEEecC
Confidence 5678888888 9999999999999999999999888 8999999987653211 0 00011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111100 11111100 001111223457788999998 56888999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ....++|++||+.+.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 99999866555544 334599999999654
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.90 E-value=9.5e-25 Score=201.42 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+ .+|.|.++|.++.-.+...+. ......++++|
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~-~~r~~i~~v~Q 105 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWR-AVRSDIQMIFQ 105 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHH-HHhCceEEEec
Confidence 578899999999999999999999999999999987 889999999876422110000 00112222222
Q ss_pred HH--hhhc---cCcEEEEEecC----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VI--AVSK---SSDIVLMVLDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~--~~~~---~~d~i~~v~~~----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. .... ..+.+.+.+.. .......+.+.++|+.+++ ..++++.+|||||+||++|| +++
T Consensus 106 ~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 106 DPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 0111 11111111110 1122234567788999998 46889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||.....++++.+ ... + ++|++|||.... +++| .++|++...++
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d----------ri~vl~~G~iv 241 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD----------RVLVMYLGHAV 241 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999999866665554 332 4 999999996544 3443 45666655544
No 104
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-24 Score=195.52 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=117.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+. .......++.+
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~----~~~~~~i~~v~ 85 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENE----KWVRSKVGLVF 85 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCH----HHHHhhEEEEe
Confidence 3678899999999999999999999999999999988 89999999976531110 00011122222
Q ss_pred HHHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 2110 00 11111111110 11112223467788999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK---IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+. ..+ ++|++||+.+. .+.+| .+++++..-+.
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d----------~i~~l~~G~i~ 217 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWAD----------QVIVLKEGRVL 217 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999998666555543 334 99999999654 34444 45566555443
No 105
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.2e-24 Score=193.97 Aligned_cols=193 Identities=20% Similarity=0.196 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++||++..|+++||||.+||||||+.++|+|+++ +-+ ...+|+|.|+|.++.-++.....+-....+++.+
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 57889999999999999999999999999999986 311 1267899999987543321100000111122222
Q ss_pred HHHh-hhcc----CcEEEEEecCC----CchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------
Q 021103 132 QVIA-VSKS----SDIVLMVLDAS----KSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~-~~~~----~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|... .+.. .+-+.-.+... ...+..+++.++|+.+++ .++.+|.+|||||+||+.||
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 2110 0000 00000000001 112235578899999999 46889999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+|+||||++||.....++++.++ . .+ ++|++|||.. +.+++| .|.|+..+-++.....+.+...
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD----------ri~VMYaG~iVE~g~~~~i~~~ 244 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD----------RVAVMYAGRIVEEGPVEEIFKN 244 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc----------eEEEEECcEEEEeCCHHHHhcC
Confidence 89999999999988666665554 3 34 9999999966 445444 4778877777655555544443
No 106
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=4.9e-25 Score=190.94 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++... . ......++..+
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~--~----~~~~~i~~~~q 79 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN--I----EALRRIGALIE 79 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch--H----HHHhhEEEecC
Confidence 577888889999999999999999999999999887 899999998765311 0 00001111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+...... .....+.++++.+++ ..++++..||+||+||+.++ +++||||++|
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG--IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 100000 0111111000001 123457778899998 67888999999999999988 8999999999
Q ss_pred CHHHHHHHHHHh---ccc-CcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEY---KIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+ ... .++|++||+... ..++|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 999866655444 333 489999999653 34443
No 107
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-24 Score=195.23 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=117.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... ......++..
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 83 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKLQ---GIRKLVGIVF 83 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccHH---HHHhheEEEE
Confidence 3578899999999999999999999999999999887 8999999998753221100 0001111111
Q ss_pred HHHh----hhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~----~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .....+++.+.... .......+.+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 00111111111110 1112223457788999998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ...+ ++|++||+.+....+ ..++++++..+.
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~----------d~v~~l~~G~i~ 214 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA----------DRIIVMDRGKIV 214 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhC----------CEEEEEECCEEE
Confidence 9999999866555544 4334 999999996544333 346677766544
No 108
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-24 Score=197.20 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... .... .......++.+
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v~ 91 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKL-KPLRKKVGIVF 91 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchH-HHHHhhEEEEe
Confidence 678899999999999999999999999999999988 8999999998763210 0000 00011112111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+.+.+... ........+.+.++|+.+++ ..++++..||+||+||++|| +++||
T Consensus 92 q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE 171 (290)
T PRK13634 92 QFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171 (290)
T ss_pred eCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 110 00 011111111110 11122223467788999998 25788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHH
Q 021103 194 PLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~ 230 (317)
||++||+.....+++.+ .. .+ ++|++|||.. +.+++|
T Consensus 172 Pt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999866555544 33 24 8999999955 344444
No 109
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.9e-24 Score=195.59 Aligned_cols=167 Identities=21% Similarity=0.189 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.....+.-........++..|
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q 92 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhheEEEee
Confidence 578889999999999999999999999999999988 899999999876422100000000111111111
Q ss_pred HH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.. ..+ ...+++.+... ..........+.++++.+++ ..++++.+||+||+||+.+| +++|||
T Consensus 93 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 172 (280)
T PRK13649 93 FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172 (280)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 000 11111111111 01111223456778888888 25788999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+. .. .++|++||+.+ +.+++|
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence 99999998666555443 33 49999999965 334443
No 110
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-24 Score=192.01 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 85 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLH---ARARRGIGYLPQ 85 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHHhCeEEecc
Confidence 578888899999999999999999999999999888 899999999765321100 000111122222
Q ss_pred HHhhhc---cCcEEEEEecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 86 EASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred CCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111111 11222111111 1112233467788999998 56788999999999999988 9999999
Q ss_pred CCCCHHHHHHH---HHHhccc-CcEEEecCCC-ChhhHHH
Q 021103 196 THVDEKLCYQI---LHEYKIH-NAEVLFREDA-TVDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~---l~~l~~~-~~~i~~shd~-~~~~~~~ 230 (317)
++||+.....+ +..+... .++|++||+. .+.+++|
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 99999886544 4444433 4999999995 4555444
No 111
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=2.3e-24 Score=185.80 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.... . ......++..+
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~--~---~~~~~i~~~~q 80 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR--D---SIARGLLYLGH 80 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc--H---HhhhheEEecc
Confidence 578888889999999999999999999999999988 8899999987653211 0 00111111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+... ....+.+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA----DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred ccccCCCcCHHHHHHhhcc----cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 11100 01111111110 1123467788899998 56788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCCC
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDAT 224 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~~ 224 (317)
|+.....+.+.+. . ..++|++||+..
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 9998666655553 3 348999999844
No 112
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=7.7e-23 Score=180.06 Aligned_cols=156 Identities=31% Similarity=0.385 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
.+|||||+||+|||||+|.|.|.... +|+.|.|||....|.+..++.++.++||||+....+. +..+.......+.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 38999999999999999999999865 9999999999999999999999999999999876322 233455566788899
Q ss_pred cEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|+++|++++...... .+.+ ++
T Consensus 87 Dlilfvvd~~~~~~~~d~~i-----------------------------------------------l~----------- 108 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFI-----------------------------------------------LE----------- 108 (298)
T ss_pred cEEEEEEeccccCCccHHHH-----------------------------------------------HH-----------
Confidence 999999997653211 1111 11
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHH-------hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL-------ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l-------~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+.. ...|.++++||+|...++. +..+ ..+..++++||.+|.|++.|.+.+.+.|+.
T Consensus 109 -----------~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 109 -----------QLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred -----------HHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 1111 1469999999999987765 2222 235689999999999999999999999864
No 113
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.90 E-value=3.1e-24 Score=189.54 Aligned_cols=161 Identities=16% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. . ....++..|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-~----~~~i~~~~q 81 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-A----LARLGVVFQ 81 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-h----hhhEEEeCC
Confidence 578888899999999999999999999999999988 899999999765321100 0 001111111
Q ss_pred HHhhh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+.+.+.... .........+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10000 001111111000 1111223456788999998 57889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~ 229 (317)
+||+.....+.+.+ .. ..++|++||+.+....+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 199 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD 199 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC
Confidence 99999866655544 32 34899999996544333
No 114
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-24 Score=199.59 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=117.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|++..|+++||+|+||||||||+++|+|+..+. -.+++|.|.++|.++.-.+...+........++.+|
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 5788999999999999999999999999999998631 012689999999875322110000000011222222
Q ss_pred HHh--hhcc---CcEEEEEec---CCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... .... .+.+...+. ........+.+.++|+.+++ .+++++.+|||||+||++|| ++
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 110 0000 000000000 01122334567889999998 25789999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 191 STLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||||++||+.....+++.+. . .+ ++|++|||.... +++| .++|++..-++.
T Consensus 177 lDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad----------ri~vm~~G~ive 234 (326)
T PRK11022 177 ADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH----------KIIVMYAGQVVE 234 (326)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEEE
Confidence 999999999998666655543 3 24 899999996543 4443 466777665543
No 115
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=1.6e-24 Score=199.86 Aligned_cols=183 Identities=18% Similarity=0.130 Sum_probs=117.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+++..|+++||+|+||||||||+++|+|...+.. ..+|.|.++|.++..++...+.......+++++|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--------~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 104 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG--------RIGGSATFNGREILNLPEKELNKLRAEQISMIFQ 104 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--------CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEc
Confidence 57889999999999999999999999999999987610 1289999999876432211000000011222222
Q ss_pred HHh--hhcc---CcEEEEEec---CCCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... ..+. .+.+...+. ..........+.++|+.+++. +++++.+|||||+||++|| ++
T Consensus 105 ~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 105 DPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred CchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 210 0000 010100000 111122345677889998882 4678999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCCh
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+||||++||......+++.+ ... + ++|++|||.... .++| .++|++..-++..
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~D----------ri~vm~~G~ive~ 243 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD----------KVLVMYAGRTMEY 243 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC----------EEEEEECCEEEEE
Confidence 99999999999866665544 332 4 899999996644 3443 4677777665543
No 116
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=3.1e-24 Score=190.00 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++....... .......++..|
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 84 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVDE--RLIRQEAGMVFQ 84 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChhH--HHHhhceEEEec
Confidence 578888899999999999999999999999999887 8999999998653210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEe---cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+.. .+.+.+.. ...........+.++++.+++ ..++++..||+||+||+++| +++||||
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111110 11111100 001112233456788999998 56888999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---cc-cCcEEEecCCCCh-hhHHH
Q 021103 196 THVDEKLCYQILHEY---KI-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~-~~~~i~~shd~~~-~~~~~ 230 (317)
++||+.....+.+.+ .. ..++|++||+... ..++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999865554444 33 3489999999553 34443
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-24 Score=195.84 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~ 130 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| ..|.|.++|.++...... .. ...+...++.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v 90 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYI-RPVRKRIGMV 90 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchH-HHHHhheEEE
Confidence 3578889999999999999999999999999999988 899999999876321100 00 0011112222
Q ss_pred HHHH--hhh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 131 RQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 131 ~~~~--~~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+|.. ..+ ...+.+.+.... .......+.+.++|+.+|+ ..++.+..||+||+||++|| +++|
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2211 000 111222111111 1122234467788999998 35678999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. .+ ++|++||+.+ +.+.+| .++++++.-+.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d----------ri~~l~~G~i~ 225 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD----------EVIVMKEGSIV 225 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866554444 32 24 9999999965 344444 45666655443
No 118
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.90 E-value=3.8e-24 Score=191.31 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCcc--------ccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGII--------EGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~--------~~~ 123 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.... ..+.. ...
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLL 90 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccccccchHHHHH
Confidence 578888899999999999999999999999999887 8899999998764210 00000 000
Q ss_pred cCCchhHHHHHhhhc---cCcEEEEEe---cCCCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE------
Q 021103 124 SEGKGRGRQVIAVSK---SSDIVLMVL---DASKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia------ 188 (317)
....++..|....+. ..+++.+.. ...........+.++++.+++ . .++++..||+||+||+.+|
T Consensus 91 ~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (257)
T PRK10619 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170 (257)
T ss_pred hhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 111122112111111 111111100 001112234567788999999 2 3788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHH---hccc-CcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHE---YKIH-NAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~---l~~~-~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+.+. +... .++|++|||... ..+|| .+++++...+.
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 231 (257)
T PRK10619 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS----------HVIFLHQGKIE 231 (257)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 999999999999986655554 4333 489999999553 33343 35666655443
No 119
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=1.6e-24 Score=191.99 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++..+
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 84 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEHQI---ARAGIGRKFQ 84 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHHHH---HhcCeeEecc
Confidence 578889999999999999999999999999999888 89999999976532110000 0001111111
Q ss_pred HHhhhcc---CcEEEEEec--------C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS---SDIVLMVLD--------A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--------~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... . .........+.++++.+++ ..++++..||+||+||+.+|
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ 164 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKL 164 (242)
T ss_pred ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 111111000 0 0111234467788999998 56888999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ....++|++||+.+. ..+|+
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 165 LLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999866555544 343599999999553 34443
No 120
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.6e-23 Score=182.84 Aligned_cols=153 Identities=23% Similarity=0.308 Sum_probs=119.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
+++||++..|+.+||||.+|||||||-++|+|+..| ++|.|.++|.++..++
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~----------------- 81 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS----------------- 81 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc-----------------
Confidence 578999999999999999999999999999999998 8999999998754321
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.....+++.++|+.+|+ .+.++|.+|||||+||++|| +++|||+|+||.
T Consensus 82 -------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 -------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred -------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 22234568889999998 68999999999999999998 899999999999
Q ss_pred HHHHHHH---HHhcc-cC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 201 KLCYQIL---HEYKI-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 201 ~~~~~~l---~~l~~-~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
....+++ ..++. .+ +.+++|||..+.+.+ .+.+.|+...-++..+..+.+..
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i---------sdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI---------SDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------cccEEEEecCceeEecCHHHHhh
Confidence 7655554 44443 34 999999997655432 33567777666665444444433
No 121
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.2e-24 Score=198.80 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=118.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+ .+|.|.++|.++.-.+...+ ...+..+++++|
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~-~~~r~~i~~v~Q 99 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQ-KLLRQKIQIVFQ 99 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHH-HHHhCCEEEEEc
Confidence 578899999999999999999999999999999987 78999999987632210000 000111222222
Q ss_pred HHh--hhcc---CcEEEEEe--c-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VSKS---SDIVLMVL--D-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~--~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .... .+.+...+ . ........+.+.++|+.+++ .+++++.+|||||+||++|| +++|
T Consensus 100 ~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD 179 (327)
T PRK11308 100 NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179 (327)
T ss_pred CchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 110 0000 00010000 0 01122234567889999998 36889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|||++||......+++.+ .. .+ ++|++|||.... .++| .++|+....++.
T Consensus 180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad----------rv~vm~~G~ive 235 (327)
T PRK11308 180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD----------EVMVMYLGRCVE 235 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEEE
Confidence 999999999866665555 33 24 999999996554 3443 466777665553
No 122
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.1e-24 Score=194.77 Aligned_cols=176 Identities=21% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.... .+.. ......++.+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~~-~~~~~ig~v~q 90 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDKK-VKLS-DIRKKVGLVFQ 90 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCcC-ccHH-HHhhceEEEec
Confidence 578889999999999999999999999999999988 8999999998763211 0000 00111222222
Q ss_pred HH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.. .. ....+.+.+... ........+.+.++++.+++. .++++..|||||+||++|| +++||
T Consensus 91 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE 170 (287)
T PRK13637 91 YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170 (287)
T ss_pred CchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 11 00 011122211111 111222334677889999983 6788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhccc-C-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILH---EYKIH-N-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~---~l~~~-~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+++ .+... + ++|++|||... ..+|| .++++...-+.
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d----------rv~~l~~G~i~ 224 (287)
T PRK13637 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLAD----------RIIVMNKGKCE 224 (287)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999998655544 44332 4 99999999553 34444 45566555443
No 123
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=4.4e-24 Score=198.43 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=133.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
++++++.+..|++.||+|.||||||||+++|.|.+.| ++|+|+++|+++.+-+ | .+..+.++++++
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~s-P--~dA~~~GIGMVh 85 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIKS-P--RDAIRLGIGMVH 85 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccCC-H--HHHHHcCCcEEe
Confidence 6788999999999999999999999999999999999 9999999999987632 2 233456788899
Q ss_pred HHHhhhccCcEE---EEEecCC-----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 132 QVIAVSKSSDIV---LMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 132 ~~~~~~~~~d~i---~~v~~~~-----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
|++.+++...+. ++..... +.....+++.++.+++|+ ..+.++..||-|++||+.|. ||+|
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD 165 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD 165 (501)
T ss_pred eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence 988877665444 3333211 122345678888999999 88899999999999999887 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCC-CChhhHHHHHh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFRED-ATVDDLIDVIE 233 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd-~~~~~~~~~~~ 233 (317)
|||+-|.|..+.+++..+ ...+ ++|++||- .++.+++|++.
T Consensus 166 EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT 211 (501)
T COG3845 166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT 211 (501)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE
Confidence 999999999877665555 4444 99999998 56667777653
No 124
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.5e-24 Score=194.49 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=110.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| ++|.|.++|.++...+... .....++.+
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 84 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIRE----VRKFVGLVF 84 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheEEEe
Confidence 3678899999999999999999999999999999888 8999999998653211100 000111111
Q ss_pred HHHh--h--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--V--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... . ....+.+.+... ........+.+.++++.+++ ..++.+..||+||+||+.+| +++|||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 0 000111111000 11122223457788999998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHH---hccc-C-cEEEecCCCCh-hhHHHH
Q 021103 195 LTHVDEKLCYQILHE---YKIH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 195 t~~LD~~~~~~~l~~---l~~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
|++||+.....+.+. +... + ++|++||+... .+.||+
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 999999886655444 4332 4 89999999553 455543
No 125
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.6e-24 Score=191.48 Aligned_cols=174 Identities=18% Similarity=0.123 Sum_probs=111.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++..+
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 87 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTA---KIMREAVAIVPE 87 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHH---HHHHhCEEEecc
Confidence 578899999999999999999999999999999988 899999999765321100 000111111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHc-cc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~-~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+++.+.............+.++++.+ ++ ..+.++..||+||+||+.+| +++||||++
T Consensus 88 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~ 167 (237)
T PRK11614 88 GRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167 (237)
T ss_pred CcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcccc
Confidence 1111110 111111000011111223455666666 35 45678899999999999988 899999999
Q ss_pred CCHHHHHHHHH---Hhccc-CcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 198 VDEKLCYQILH---EYKIH-NAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 198 LD~~~~~~~l~---~l~~~-~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
||+.....+.+ .+... .++|++||+.+ +.+.+| .++++++..+
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d----------~i~~l~~G~i 215 (237)
T PRK11614 168 LAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLAD----------RGYVLENGHV 215 (237)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCC----------EEEEEeCCEE
Confidence 99998655544 44333 49999999954 555444 4556665443
No 126
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-24 Score=200.04 Aligned_cols=183 Identities=12% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+- ..+.+|.|.++|.++...+...+.......+++++|
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 6788999999999999999999999999999998530 012689999999875322110000000011222222
Q ss_pred HHhh-h-c---cCcEEEEE-----ecC---CCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE------
Q 021103 133 VIAV-S-K---SSDIVLMV-----LDA---SKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 133 ~~~~-~-~---~~d~i~~v-----~~~---~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia------ 188 (317)
.... + . ..+.+... ... .........+.++|+.+++. +++++.+|||||+||++||
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 1100 0 0 00000000 000 01112345678899999992 4788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+....++++.+. . .+ ++|++|||.... +++ ..++|+++.-++.
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~----------dri~vm~~G~ive 239 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA----------DKINVLYCGQTVE 239 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC----------CEEEEEECCEEEE
Confidence 99999999999988666555543 3 24 999999995544 444 3467777765543
No 127
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=2.2e-24 Score=185.74 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.. +...+ ....++..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~~~~----~~~i~~~~q 81 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DLCTY----QKQLCFVGH 81 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CHHHH----HhheEEecc
Confidence 578889999999999999999999999999999888 89999999876531 10000 001111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
..... ...+++.+..... . ....+.++++.+++ ..++++..||+||+||+++| +++||||++|
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFS-P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcC-c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 10000 0011111110000 1 12356788888888 45778899999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCChhhHHHH
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATVDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~~~ 231 (317)
|+.....+.+.+. .. .++|++||+....+.+|+
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccch
Confidence 9998665555443 33 489999999776555543
No 128
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.8e-24 Score=186.80 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... .+ ....++..+
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~~-~~----~~~~~~~~~ 81 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQRD-EY----HQDLLYLGH 81 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccchH-Hh----hhheEEeCC
Confidence 578888999999999999999999999999999988 88999999977532110 00 000010000
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+.+.+...... ......+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHG-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcC-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 00000 00111100000011 1233567788999999 57888999999999999988 8999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCCChhh
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDATVDD 227 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~~~~~ 227 (317)
|+.....+.+.+. . ..++|++||+.+.-+
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 9998666555443 3 349999999965443
No 129
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.9e-24 Score=194.20 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+.. ......++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~~~q 88 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETVW----DVRRQVGMVFQ 88 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHH----HHhhheEEEEe
Confidence 578889999999999999999999999999999988 899999999875321100 00111222222
Q ss_pred HHh-hh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+.... .........+.++++.+++ ..++.+..||+||+||+++| +++||||
T Consensus 89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 110 01 112222221111 1112223457888999998 68889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhh
Q 021103 196 THVDEKLCYQILHEY---KIH-N-AEVLFREDATVDD 227 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~ 227 (317)
++||+.....+.+.+ ... + +++++||+.....
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 999999866655544 332 4 8999999965443
No 130
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.89 E-value=8e-23 Score=180.05 Aligned_cols=167 Identities=34% Similarity=0.477 Sum_probs=131.4
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+.++...-.-++|||.||||||||||+|+...+.|++|+|||+.|.-|.+.+++.. +...|.||+++.++.+.+++.+
T Consensus 188 ~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~ 267 (366)
T KOG1489|consen 188 VIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK 267 (366)
T ss_pred EEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHH
Confidence 445566666789999999999999999999999999999999999999999998765 8999999999999999999999
Q ss_pred HHhhhccCcEEEEEecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
++..+..++.++||+|.+... .+.+.+...|+.++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye---------------------------------------- 307 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE---------------------------------------- 307 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh----------------------------------------
Confidence 999999999999999986541 11222222222211
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-hh-HHHHhcC---CCeEEEeccccccHHHHHHH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DD-VDKLARQ---PNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-~~-~~~l~~~---~~~v~iSa~~~~~i~~l~~~ 282 (317)
.....+|.++|+||+|+... +. ++.+.+. +.++++||+.++++..|++.
T Consensus 308 --------------------------k~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~ 361 (366)
T KOG1489|consen 308 --------------------------KGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNG 361 (366)
T ss_pred --------------------------hhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHH
Confidence 01125799999999999533 33 2555543 34899999999999999998
Q ss_pred HHHH
Q 021103 283 MWEE 286 (317)
Q Consensus 283 i~~~ 286 (317)
|.+.
T Consensus 362 lr~~ 365 (366)
T KOG1489|consen 362 LREL 365 (366)
T ss_pred Hhhc
Confidence 8654
No 131
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.8e-24 Score=191.95 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|..+| .+|.|.++|.++...+.... ......+.++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 87 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQI---ARMGVVRTFQ 87 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHH---HhcCeEEecc
Confidence 577888889999999999999999999999999888 89999999976532110000 0000110011
Q ss_pred HHhhhc---cCcEEEE-------------EecC---C-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--
Q 021103 133 VIAVSK---SSDIVLM-------------VLDA---S-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~-------------v~~~---~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-- 188 (317)
....+. ..+++.+ ..+. . ........+.++++.+++ ..++++.+||+||+||+.+|
T Consensus 88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 167 (255)
T PRK11300 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC 167 (255)
T ss_pred CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence 100000 0011100 0000 0 001123456778889998 67889999999999999998
Q ss_pred -------eeecCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHH
Q 021103 189 -------FNSTLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATV-DDLID 230 (317)
Q Consensus 189 -------lilDEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ... + ++|++||+... .++||
T Consensus 168 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 168 MVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999866554444 332 4 89999999553 34443
No 132
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.9e-24 Score=197.44 Aligned_cols=178 Identities=18% Similarity=0.117 Sum_probs=117.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-------cC------CC
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-------DL------PG 118 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-------d~------~g 118 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-. .. ..
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~ 110 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSKKIKN 110 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEcccccccccccccccccccch
Confidence 3678899999999999999999999999999999988 899999999765310 00 00
Q ss_pred ccccccCCchhHHHHH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-
Q 021103 119 IIEGASEGKGRGRQVI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia- 188 (317)
. ...+...++.+|.. ..+ ...+.+.+... ..........+.++++.+++ ..++.+.+|||||+||++||
T Consensus 111 ~-~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAr 189 (320)
T PRK13631 111 F-KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAG 189 (320)
T ss_pred H-HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 0 00011122222211 001 00111111110 01112233457788999998 36788999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.+...+++.+. ..+ |+|++||+.+ +.+++| .+++++..-+.
T Consensus 190 aL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad----------ri~vl~~G~i~ 255 (320)
T PRK13631 190 ILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD----------EVIVMDKGKIL 255 (320)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999999998766655553 334 9999999965 445443 46677766554
No 133
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-23 Score=189.17 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=109.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ... ......++.+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~-~~~-~~~~~i~~v~ 83 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKR-GLL-ALRQQVATVF 83 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccC-CHH-HHHhheEEEe
Confidence 3578889999999999999999999999999999988 89999999987631111 000 0011111111
Q ss_pred HHHh--hh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--VS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ..........+.++++.+++ ..++++..|||||+||+.+| +++|||
T Consensus 84 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 84 QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred eChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 00 00111111111 01111223456778889998 57888999999999999998 899999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~ 230 (317)
|++||+.....+++.+ ...+ ++|++|||... .+++|
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD 204 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999865554444 3334 89999999653 34444
No 134
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.6e-24 Score=187.42 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ....++.++
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~~q 78 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPPS------RRPVSMLFQ 78 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCChh------hccEEEEec
Confidence 378889999999999999999999999999999988 889999999865321100 011111111
Q ss_pred HHhhh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||+.++ +++||||+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11111 111222111111 1112234567888999999 67889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+... .++++
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99999865554444 32 3389999999663 44444
No 135
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=4.5e-24 Score=191.65 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=114.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~q 95 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQR-RAFRRDVQLVFQ 95 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHH-HHHhhceEEEec
Confidence 578899999999999999999999999999999888 89999999987542211000 000011111111
Q ss_pred HHh--hh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .. ...+++.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|
T Consensus 96 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD 175 (265)
T TIGR02769 96 DSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175 (265)
T ss_pred ChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 110 00 00111100000 01112234467788999998 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+ +..+.. ..++|++||+.... .++| .++++++..+.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 230 (265)
T TIGR02769 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ----------RVAVMDKGQIV 230 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc----------EEEEEeCCEEE
Confidence 99999999875554 444433 34999999996543 3443 46666665443
No 136
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=3.9e-24 Score=187.76 Aligned_cols=165 Identities=19% Similarity=0.116 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH-----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~-----~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++++.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+. .. .......
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~-~~-~~~~~~i 83 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV-DV-LELRRRV 83 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-HH-HHHHhhE
Confidence 5788899999999999999999999999999998 66 88999999987532210 00 0000111
Q ss_pred hhHHHHHhhh--ccCcEEEEEecCC--Cc-hhhHHHHHHHHHHccc--ccccc--CCcccccceeeeeeE---------e
Q 021103 128 GRGRQVIAVS--KSSDIVLMVLDAS--KS-EGHRQILTKELEAVGL--RLNKR--PPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 128 ~~~~~~~~~~--~~~d~i~~v~~~~--~~-~~~~~~~~~~L~~~~l--~~~~~--~~~LS~g~~qr~~ia---------l 189 (317)
++.+|....+ ...+++.+..... .. ....+.+.++++.+++ ..++. +.+||+||+||+++| +
T Consensus 84 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 84 GMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred EEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111111111 1112121111101 11 1123567788999998 34555 599999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.....+.+.+. ...++|++|||... .+++|
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVAD 208 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCC
Confidence 9999999999998666655553 23589999999653 44443
No 137
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.7e-24 Score=189.71 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=108.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc--cccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~--~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.......- ........++.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 87 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMV 87 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhHHHHHhheEEE
Confidence 577888889999999999999999999999999887 89999999986521100000 00000111111
Q ss_pred HHHHhhhcc---CcEEEE-Eec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 131 RQVIAVSKS---SDIVLM-VLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~-v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
+|....+.. .+.+.+ ... ..........+.++++.+++ ..++.+..||+||+||+++| +++||
T Consensus 88 ~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 167 (242)
T PRK11124 88 FQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred ecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111111 111110 000 01111223457788899998 57888999999999999988 89999
Q ss_pred CCCCCCHHHHHHHHHHhc---c-cCcEEEecCCCChh-hHHH
Q 021103 194 PLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVD-DLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~---~-~~~~i~~shd~~~~-~~~~ 230 (317)
||++||+.....+.+.+. . ..++|++||+.... +++|
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 999999998665555443 3 34899999996543 4443
No 138
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=3.6e-24 Score=186.38 Aligned_cols=159 Identities=15% Similarity=0.078 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ....++..+
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~~-------~~~i~~~~q 89 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGDR-------SRFMAYLGH 89 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchhh-------hhceEEeec
Confidence 578888899999999999999999999999999988 88999999876531100 000111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+.+.+...... ....+.+.++++.+++ ..++++..||+||+||++++ +++||||++|
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1000000 011100000001 1123456678888888 57888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 999866554444 33 349999999954 445544
No 139
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=4.7e-24 Score=183.39 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... ......++..+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-----~~~~~i~~~~q 80 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQRD-----EPHRNILYLGH 80 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccchH-----HhhhheEEecc
Confidence 577888889999999999999999999999999888 88999999987542210 00011111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+....... ....+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 100000 01111111011111 12356788899998 57888999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCC
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDA 223 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~ 223 (317)
|+.....+.+.+. . ..++|++||+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 9988666555543 2 34899999985
No 140
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.4e-24 Score=189.26 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+..- .....++.+|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPVE----LRRKIGYVIQ 82 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChHH----hhcceEEEcc
Confidence 578889999999999999999999999999999887 8899999997653221100 0011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+.. .+.+.+.. ...........+.++++.+++. .++++.+||+||+||+++| +++|||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1111110 11111110 0111122334577889999883 4778899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+. . ..++|++||+.. +.+++|
T Consensus 163 t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 99999998665555443 2 348999999964 444443
No 141
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.89 E-value=7.8e-24 Score=188.23 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=108.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-----eEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-----PGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-----~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++++.+|++++|+|+||||||||+++|+|...| . +|.|.++|.++..... .. .......
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~~~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i 84 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL-----------VPGVRIEGKVLFDGQDIYDKKI-DV-VELRRRV 84 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CcCCCCceEEEECCEEcccccc-ch-HHHHhhe
Confidence 578899999999999999999999999999999977 5 8999999987632100 00 0001111
Q ss_pred hhHHHHHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++.+|....+ ...+++.+..... ........+.++++.+++. .++++..||+||+||+.+|
T Consensus 85 ~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 85 GMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred EEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1111111111 1111111111111 1122234567788888873 4678899999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+. ...++|++||+.+ +.+++|
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISD 211 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCC
Confidence 99999999999998666555443 3359999999965 445444
No 142
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.89 E-value=7.1e-23 Score=187.07 Aligned_cols=221 Identities=25% Similarity=0.273 Sum_probs=151.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------C---CeeEEEecCCCcc
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGII 120 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~---g~~i~~~d~~g~~ 120 (317)
++|+|.||+|||||||+|++....+++|||||++|+.|.+.+ + +.+++++|+||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999888999999999999998875 2 2578999999998
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCC---------------chhhHHHHHHHHHHccc-cccccCCcccccceee
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKT 184 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~---------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr 184 (317)
+....+.+...+++..++.+|++++++|... +..+.+.+...|..+.+ .+.+++..++...+ +
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~-~ 159 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD-A 159 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 8777777777888889999999999998752 22344556666665433 22333222221000 0
Q ss_pred e--eeEeeecCCCC--CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-HH
Q 021103 185 G--GISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-KL 259 (317)
Q Consensus 185 ~--~ialilDEPt~--~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-~l 259 (317)
. .+...+....+ +.+...+..+|+. ....+.+....+.+++++.+.+.. ..+|+|+|+||+|+...+... .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~ll--t~KPvI~VlNK~Dl~~~~~~~~~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEE-LELPEDLSKWTDEDLLRLARALRK--RSKPMVIAANKADIPDAENNISKL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHh-CCCCCcccCCCHHHHHHHHHHHHh--cCCcEEEEEEHHHccChHHHHHHH
Confidence 0 00000111122 4455666666644 222344445556667777666553 368999999999986544322 22
Q ss_pred ---hcCCCeEEEeccccccHHHHHH-HHHHHhCe
Q 021103 260 ---ARQPNSVVISCNLKLNLDRLLA-RMWEEMGL 289 (317)
Q Consensus 260 ---~~~~~~v~iSa~~~~~i~~l~~-~i~~~l~~ 289 (317)
..+..++++||+.+.++++|.+ .+.+.++.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 2245699999999999999998 69999864
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.1e-24 Score=191.31 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=108.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+...+ ....++.+|
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 92 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSKAF----ARKVAYLPQ 92 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHHHH----hhheEEecc
Confidence 577888889999999999999999999999999887 89999999976532111000 001111111
Q ss_pred HHhhh---ccCcEEEEE---ecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMV---LDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v---~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+. ... .......+.+.++++.+++ ..++++.+||+||+||+.+| +++|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 10000 001111110 000 0111233457788999998 57889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+ +..+.. ..++|++||+.. +.+++|
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999986555 444433 348999999955 334443
No 144
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=6.2e-24 Score=207.16 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 86 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGPK---SSQEAGIGIIHQ 86 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCEEEEEc
Confidence 578889999999999999999999999999999988 899999999775321100 000112222223
Q ss_pred HHhhh---ccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++.+|||||+||+.|| +++|
T Consensus 87 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 166 (501)
T PRK10762 87 ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD 166 (501)
T ss_pred chhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22111 112222221110 0111223457788999999 56888999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHH---HHhcccC-cEEEecCCCC-hhhHHHHH
Q 021103 193 LPLTHVDEKLCYQIL---HEYKIHN-AEVLFREDAT-VDDLIDVI 232 (317)
Q Consensus 193 EPt~~LD~~~~~~~l---~~l~~~~-~~i~~shd~~-~~~~~~~~ 232 (317)
|||++||+.....++ ..+...+ ++|++|||.. +..+||++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i 211 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDV 211 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999866654 4444334 8999999954 45666543
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1e-23 Score=186.81 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~~~q 84 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVID----LRRKIGMVFQ 84 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChHH----hhhcEEEEec
Confidence 578888899999999999999999999999999887 8999999998753221100 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+.+.+..... . .....+.++++.+++ ..++++..||+||+||+++| +++||||++|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 85 QPHLFEGTVKDNIEYGPMLK-G-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred CchhchhhHHHHHhcchhhc-C-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11111 0011111110001 1 123456778888888 35788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+... .+++|
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCC
Confidence 999866554444 32 3499999999553 44443
No 146
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=4.4e-24 Score=187.22 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=107.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ......++.+
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~~ 87 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPE----IYRQQVSYCA 87 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHH----HHHhccEEEe
Confidence 3678899999999999999999999999999999887 899999998765322110 0001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
|....+ ...+.+.+.............+.++++.+++ ..++++.+||+||+||++++ +++||||++
T Consensus 88 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (225)
T PRK10247 88 QTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167 (225)
T ss_pred cccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111111 0011111111111111123456788999988 35788999999999999998 899999999
Q ss_pred CCHHHHHHHHH---Hhcc--cCcEEEecCCCChhh
Q 021103 198 VDEKLCYQILH---EYKI--HNAEVLFREDATVDD 227 (317)
Q Consensus 198 LD~~~~~~~l~---~l~~--~~~~i~~shd~~~~~ 227 (317)
||+.....+.+ .+.. ..++|++||+.+...
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99998665544 4432 338999999976443
No 147
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-23 Score=199.06 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+|+.+||+|+||||||||+++|+|..+| ++|+|.++|.+..-++...++++ ..++.|
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-----------~~G~I~vng~~l~~l~~~~~~k~----i~~v~Q 402 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-----------TQGEIRVNGIDLRDLSPEAWRKQ----ISWVSQ 402 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCccccccCHHHHHhH----eeeeCC
Confidence 578889999999999999999999999999999998 89999999988765543333221 111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c----------ccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R----------LNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~----------~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+.. .+++.+. ++....+.+.+.++..++ . +...-..|||||+||+++| +
T Consensus 403 ~p~lf~gTireNi~l~----~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 403 NPYLFAGTIRENILLA----RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred CCccccccHHHHhhcc----CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 2222211 2333222 122234456667776665 1 2223345999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
++||||+|||.++-..+++.+ ....+++++||+..... ...+|+|+|+.-++..+..+++.+
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~----------~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA----------DADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh----------cCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999855555544 45579999999966543 356799999988776655555543
No 148
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.8e-24 Score=190.94 Aligned_cols=175 Identities=18% Similarity=0.130 Sum_probs=115.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+... .....++..
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 89 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFEK----LRKHIGIVF 89 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheeEEE
Confidence 3578899999999999999999999999999999988 8999999998653211100 001111111
Q ss_pred HHHh-hhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+.. .+.+.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 0000 111111111 01111223456788899998 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+.+ .+.. ..++|++||+......+ ..++++++..+.
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~----------d~i~~l~~G~i~ 221 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEA----------DHVIVMNKGTVY 221 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcC----------CEEEEEECCEEE
Confidence 99999998665544 4433 23899999996543323 346667765544
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-23 Score=190.12 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=117.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++..... . .......++.+|
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~--~-~~~~~~i~~v~q 92 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDEEN--L-WDIRNKAGMVFQ 92 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccc--H-HHHhhheEEEec
Confidence 578888899999999999999999999999999988 89999999987532110 0 001111222222
Q ss_pred HHh--hh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--VS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+.... .........+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 93 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 93 NPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 110 00 011222221111 1122234567888999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEYK---I-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+.+.+. . .+ ++|++||+.+....+ ..++++++.-+.
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~----------d~v~~l~~G~i~ 223 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEA----------DRIIVMDSGKVV 223 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcC----------CEEEEEECCEEE
Confidence 9999998666555443 2 24 899999996654323 346666655443
No 150
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=2.8e-23 Score=185.66 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..+
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRRA----RARRVALVEQ 82 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHHH----HhhheEEecc
Confidence 577888889999999999999999999999999888 8899999998764321100 0001111111
Q ss_pred HHhhh---ccCcEEEEEe------cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVL------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~------~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11000 0011111100 000111233467788999998 57889999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCChh-hHHH
Q 021103 193 LPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVD-DLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~~-~~~~ 230 (317)
|||++||+.....+.+ .+... .++|++||+.... +++|
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 163 EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999998655544 44333 4899999995543 4443
No 151
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.89 E-value=1e-23 Score=178.57 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=99.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ......++.+|
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~----~~~~~i~~~~q 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPK----ELARKIAYVPQ 80 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHH----HHHHHHhHHHH
Confidence 577888899999999999999999999999999888 899999998765321100 00000111111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
+++.+++ ..++.+..||+||+||++++ +++||||++||+.
T Consensus 81 -----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 131 (180)
T cd03214 81 -----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131 (180)
T ss_pred -----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 5666776 45778899999999999988 9999999999998
Q ss_pred HHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 202 LCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 202 ~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
....+.+ .+.. ..++|++||+.+. .+++|
T Consensus 132 ~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 132 HQIELLELLRRLARERGKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 8555544 4443 3489999999654 35444
No 152
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=200.32 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=125.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++||++..|+++||||.+|||||||.++|+|+..| .+|.+.++|.++. .. .+-.........+++
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~~~-~~-~~~~~~~r~~~QmvF 373 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQDLD-LT-GGELRRLRRRIQMVF 373 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcccc-cc-cchhhhhhhheEEEE
Confidence 3688999999999999999999999999999999998 8999999887721 11 111111111122222
Q ss_pred HHHh--hhccC---cEEEEEecCCC---chhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIA--VSKSS---DIVLMVLDASK---SEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~--~~~~~---d~i~~v~~~~~---~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|... .-+.. +.+...+.... .....+++.++|+.+++ .++++|.+|||||+||++|| +++
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 2111 00000 11111111111 12234568889999999 58999999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
||||+.||+.....+++.+. . .+ +.+++|||..+ ..+| ..+.|+...-++..+..+.+.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~----------drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA----------DRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC----------ceEEEEECCeEEEeCCHHHHh
Confidence 99999999998666655554 2 34 99999999654 3444 457888888777554434443
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.89 E-value=7.8e-24 Score=184.10 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=109.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-. +. .....++..|
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~~----~~~~i~~v~q 77 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHTGL--AP----YQRPVSMLFQ 77 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcccC--Ch----hccceEEEec
Confidence 478899999999999999999999999999999988 899999999865311 00 0111122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.... .........+.++++.+++ ..++.+..||+||+||+.+| +++||||+
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFS 157 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 111111 11111111110 1111233457788999999 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+... .+++|
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 158 ALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIAS 197 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 99999866555544 32 2389999999553 44444
No 154
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.89 E-value=5.6e-24 Score=186.75 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .........++..|
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i~~~~q 89 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRR-LRKIRRKEIQMVFQ 89 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchh-hHHHhhccEEEEec
Confidence 578888899999999999999999999999999888 899999999876422110 00000111111111
Q ss_pred HHh--hh---ccCcEEEEEecCC--Cc-hhhHHH-HHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA--VS---KSSDIVLMVLDAS--KS-EGHRQI-LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~~~--~~-~~~~~~-~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .. ...+++.+..... .. ...... +.++++.+++ ..++++..||+||+||+.+| +++
T Consensus 90 ~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 90 DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 110 00 1111111111111 11 111122 2467888887 35788999999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~ 225 (317)
||||++||+.....+.+.+ .. ..++|++||+.+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999866554444 33 3499999999653
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.1e-24 Score=191.43 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=111.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ....++..
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~----~~~i~~v~ 89 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLKEI----RKKIGIIF 89 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHHHH----hcceEEEE
Confidence 3678899999999999999999999999999999988 89999999987632111111 11122212
Q ss_pred HHHh-h---hccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-V---SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~---~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... . ....+++.+.... .........+.++++.+++ ..++.+..||+||+||++++ +++|||
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 0 1112222211111 1112223457788999999 67889999999999999988 899999
Q ss_pred CCCCCHHHHHHHHHHh---ccc--CcEEEecCCCChhhHH
Q 021103 195 LTHVDEKLCYQILHEY---KIH--NAEVLFREDATVDDLI 229 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~--~~~i~~shd~~~~~~~ 229 (317)
|++||+.....+++.+ ... .++|++||+.+....+
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 209 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILA 209 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhC
Confidence 9999999866555544 332 4899999996544433
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=5.8e-24 Score=187.76 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR- 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~- 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...+ ....++..
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~-~~~~----~~~i~~~~~ 101 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKR-RKKF----LRRIGVVFG 101 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccc-chhh----cccEEEEcC
Confidence 578888889999999999999999999999999888 899999998754210 0000 00111110
Q ss_pred HHHhh---hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
+.... +...+++.+... ..........+.++++.+++ ..++++..||+||+||+.++ +++||||
T Consensus 102 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00000 000111111000 11112223456678888888 56888999999999999888 8999999
Q ss_pred CCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC
Confidence 9999998666555443 2 249999999965 344444
No 157
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.89 E-value=1e-23 Score=188.06 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCcc------ccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGII------EGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~------~~~ 123 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ ..+.. ...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccccchhHHHHH
Confidence 578889999999999999999999999999999888 8999999998764221 00000 000
Q ss_pred cCCchhHHHHHhhhcc---CcEEEEEe---cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 124 SEGKGRGRQVIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~---~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
....++.+|....+.. .+++.+.. ...........+.++++.+++ ..++.+..||+||+||+.+|
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCC
Confidence 1111111111111111 11111100 001111223456788999998 56788999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~ 225 (317)
+++||||++||+.....+.+.+ .. ..++|++||+...
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8999999999999866554444 33 2389999999653
No 158
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-23 Score=190.17 Aligned_cols=177 Identities=21% Similarity=0.175 Sum_probs=115.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++.....+ . .......++..
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 84 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS-L-LEVRKTVGIVF 84 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch-H-HHHHhheEEEe
Confidence 3578899999999999999999999999999999987 899999999876311000 0 00001111111
Q ss_pred HHH--hhh--ccCcEEEEEe-c-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVI--AVS--KSSDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~--~~~--~~~d~i~~v~-~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|.. ..+ ...+.+.+.. + ..........+.++++.+++ ..++++.+||+||+||+.+| +++|||
T Consensus 85 q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 85 QNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred eChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110 000 1111111100 0 11111223457788999998 67888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK---IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+. ..+ +++++||+.+. .+.|| .++++++.-+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d----------~i~~l~~G~i~ 216 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD----------KVYVMSDGKII 216 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999998666555443 334 89999999553 34443 45566655443
No 159
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=7e-24 Score=207.08 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=112.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+.. .......++..|
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 93 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPA---KAHQLGIYLVPQ 93 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHH---HHHhCCEEEEec
Confidence 578889999999999999999999999999999988 899999999765321100 000011222222
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+... ......+.+.++++.+++ ..++++.+|||||+||+.|| +++||||++|
T Consensus 94 ~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 94 EPLLFPNLSVKENILFGLP--KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred cCccCCCCcHHHHhhcccc--cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 21111 11222222111 112234567888999999 67888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 199 DEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
|+.....+.+.+ ...+ ++|++|||.+ +.++||+
T Consensus 172 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 172 TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 999866655544 3334 8999999955 4455544
No 160
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.89 E-value=1.3e-23 Score=188.95 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... ... .....++.+|
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~---~~~~i~~v~q 94 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-YSY---RSQRIRMIFQ 94 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-hhh---HhccEEEEec
Confidence 578899999999999999999999999999999988 8999999997753211 000 0011111111
Q ss_pred HHh--hhcc---CcEEEEEe--c-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VSKS---SDIVLMVL--D-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~--~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .... .+.+.+.. . ........+.+.++++.+++ ..+.++..||+||+||+++| +++|
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD 174 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 110 0000 01110000 0 01111223457788999998 35677899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATV 225 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~ 225 (317)
|||++||+.....+.+.+ .. .+ ++|++||+.+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 999999999866554444 32 24 89999999543
No 161
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=187.42 Aligned_cols=170 Identities=16% Similarity=0.085 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+. .. .......++..|
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v~q 94 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP------GARVEGEILLDGENIYDPHV-DV-VELRRRVGMVFQ 94 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCC------CCCCceEEEECCEEcccccc-CH-HHHhhcEEEEec
Confidence 57888899999999999999999999999999863100 01268999999987532110 00 000111111111
Q ss_pred HHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.... .......+.+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 95 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111110 01111111110 0111223456777888886 24778899999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.+++|
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 175 EPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCC
Confidence 999999999865554444 33348999999965 344444
No 162
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=187.90 Aligned_cols=162 Identities=22% Similarity=0.178 Sum_probs=108.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe---cCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL---DLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~---d~~g~~~~~~~~~~~ 129 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+.....
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~-- 90 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQALQKNLVAYVPQSEEVD-- 90 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHhhccceEEEeccccccc--
Confidence 578889999999999999999999999999999888 899999999765210 0011111110000
Q ss_pred HHHHHhhhccCcEEEEEe-c---C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 130 GRQVIAVSKSSDIVLMVL-D---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~-~---~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
........+.+.+.. . . .........+.++++.+++ ..++++..||+||+||+++| +++|
T Consensus 91 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 91 ---WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ---cCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000000111111110 0 0 0111233456778899998 57889999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ...+ ++|++||+.+ +.++++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999865554444 3334 8999999964 445444
No 163
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=5.5e-23 Score=180.11 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... .++... . .+.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~----~-tv~ 102 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGLGGGFNPE----L-TGR 102 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcccccCCCC----C-cHH
Confidence 578889999999999999999999999999999887 89999999987542211 111110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+....... ............+.++++.+++ ..++++..||+||+||+.+| +++||||++||+
T Consensus 103 enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 103 ENIYLNGR-------LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11111000 0001112223356677888888 56888999999999999988 999999999999
Q ss_pred HHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 201 KLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
.+...+.+.+ ... .++|++||+.. +..++|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 8855554444 333 48999999954 344443
No 164
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=6.2e-24 Score=202.18 Aligned_cols=191 Identities=19% Similarity=0.139 Sum_probs=128.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+.+||+|.+||||||+.++|.|..++-. ...+|.|.++|.++.-.+..+........+.+.+|
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 68899999999999999999999999999999987611 11589999999865433222111111111222222
Q ss_pred HH-hhhccC----cEEEEEecCC---CchhhHHHHHHHHHHccc--cc--cccCCcccccceeeeeeE---------eee
Q 021103 133 VI-AVSKSS----DIVLMVLDAS---KSEGHRQILTKELEAVGL--RL--NKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~-~~~~~~----d~i~~v~~~~---~~~~~~~~~~~~L~~~~l--~~--~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. ..+... +-+.-+...+ ...+..+++.++|+.+++ .. +++|++|||||+||+.|| |++
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 11 001000 0000000011 133456678899999999 22 469999999999999888 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 192 TLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
||||++||.....++++.++ ..+ ++|++|||..+. ++ ...++|+.+..++..+..+.+.
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~----------aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL----------ADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh----------cCeEEEEECCEEEEecCHHHHH
Confidence 99999999998777777665 234 899999996644 33 3568899999988766555544
No 165
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.6e-24 Score=190.00 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.-.+...+ ....++.+|
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q 83 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQL----ARRLALLPQ 83 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHHH----hhheEEecc
Confidence 577888889999999999999999999999999887 88999999876532110000 001111111
Q ss_pred HHhhh---ccCcEEEEEe----c--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVL----D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~----~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.. . ..........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11000 0011111100 0 00112233457788898998 57889999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
|||++||+.....+.+.+ ...+ ++|++||+.. +.+++++
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 999999999866655544 3334 9999999955 4455543
No 166
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-23 Score=187.22 Aligned_cols=181 Identities=16% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.+. .+.+|.|.++|.++...+.+ . .......++..|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 95 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG------IKIEGNVIYEGKNIYSNNFD-I-LELRRKIGMVFQ 95 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcC------CCCceEEEECCEeccccccc-H-HHHhhceEEEee
Confidence 578889999999999999999999999999999875110 01479999999775321100 0 000111122112
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .......+.+.+.++.+++ ..++++..|||||+||+.+| +++|
T Consensus 96 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 175 (254)
T PRK14273 96 TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD 175 (254)
T ss_pred ccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11111 111111111110 1111223456677777775 35778999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHH---hcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHE---YKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~---l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++. +....++|++||+... .+++| .+++++...+.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d----------~i~~l~~G~i~ 228 (254)
T PRK14273 176 EPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISD----------RTAFFLNGCIE 228 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999986555444 4333489999999654 34443 35666655444
No 167
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-23 Score=187.00 Aligned_cols=168 Identities=17% Similarity=0.123 Sum_probs=108.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+..+ .|.+|.|.++|.++...+.. ......++.+|
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~i~~~~~~----~~~~~i~~v~q 89 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE------ARVSGEVYLDGQDIFKMDVI----ELRRRVQMVFQ 89 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC------CCCceEEEECCEECCcCCHH----HHhccEEEEec
Confidence 578888889999999999999999999999999863000 02689999999865321100 00111222222
Q ss_pred HHhhhc---cCcEEEEEec--C--CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSK---SSDIVLMVLD--A--SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~--~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
....+. ..+++.+... . .......+.+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 90 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 90 IPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred cCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 1111111110 0 0112223456788888887 25788999999999999988 89
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....+.+.+. ...++|++||+... .+++|
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISD 213 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999999998665555443 33489999999653 34443
No 168
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.88 E-value=5.7e-24 Score=186.32 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC--Ce--eEEEecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DT--KIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~--g~--~i~~~d~~g~~~~~~~~~~ 128 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++ |. ++...+...+........+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 93 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVRRKTIG 93 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHHhcceE
Confidence 578889999999999999999999999999999887 78999987 32 2211100000000000111
Q ss_pred hHHHHHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc-c--ccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL-R--LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l-~--~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+..|....+.. .+++.+.. .........+.+.++++.+++ . .++++.+||+||+||++++ +++
T Consensus 94 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 173 (224)
T TIGR02324 94 YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLL 173 (224)
T ss_pred EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111111110 01111000 011111223466788899998 2 4678999999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh-hHHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD-DLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~-~~~~~ 231 (317)
||||++||+.....+++.+. ..+ ++|++||+.+.. +++|+
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 174 DEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADR 218 (224)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 99999999998666555543 334 899999996543 45554
No 169
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.88 E-value=6.1e-22 Score=183.90 Aligned_cols=158 Identities=28% Similarity=0.315 Sum_probs=122.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhh
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVS 137 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~ 137 (317)
.|.+++|+|+||+|||||||+|++.... |+++||||||..+..+.++|.++.++||+|+++.... +.. .......+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~-VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDV-VERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccH-HHHHHHHHHHHHH
Confidence 4789999999999999999999999976 9999999999999999999999999999999853221 111 23445677
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|++.+....+. .
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~------------------------------------------~---------------- 316 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL------------------------------------------A---------------- 316 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH------------------------------------------H----------------
Confidence 899999999998764211110 0
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH--hcCCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
+.+ ..+..+|+++|+||.|+......... ......+.+|++++.|++.|.+.|...+...
T Consensus 317 ----------~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 317 ----------LIE---LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ----------HHH---hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 000 01235899999999999976554433 3334589999999999999999999887653
No 170
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.9e-24 Score=191.14 Aligned_cols=176 Identities=21% Similarity=0.201 Sum_probs=116.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. +.... .......++.+|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~-~~~~~-~~~~~~ig~v~q 89 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDY-SRKGL-MKLRESVGMVFQ 89 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCC-CcchH-HHHHhhEEEEec
Confidence 578889999999999999999999999999999988 89999999987631 10000 000011111111
Q ss_pred HH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.. .. ....+++.+... ........+.+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 00 011111111110 11122233567888999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+ +..+.. ..+++++||+.+. .++|| .++++++.-+.
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d----------ri~~l~~G~i~ 221 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD----------NVFVMKEGRVI 221 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999986654 444443 3499999999654 34444 45666655443
No 171
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-23 Score=187.41 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ....++..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q 83 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAEL----ARRRAVLPQ 83 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHHh----hhheEEEcc
Confidence 578888889999999999999999999999999887 89999999976532111000 001111111
Q ss_pred HHhh---hccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------------ee
Q 021103 133 VIAV---SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FN 190 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------------li 190 (317)
.... ....+++.+.... .........+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 1100 0111111111100 1112223457788999999 57889999999999999765 67
Q ss_pred ecCCCCCCCHHHHHHHH---HHhc-cc-CcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQIL---HEYK-IH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l---~~l~-~~-~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....++ ..+. .. .++|++||+... ..++|
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence 89999999999865554 4443 33 499999999553 34444
No 172
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=6.6e-24 Score=185.40 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| ..|.|.++|.++...+... .....++..
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 84 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPAD----LRRNIGYVP 84 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHHH----HHhhEEEeC
Confidence 3578899999999999999999999999999999887 8899999987653211000 000111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccc-----------cCCcccccceeeeeeE--------
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK-----------RPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~-----------~~~~LS~g~~qr~~ia-------- 188 (317)
|....+ ...+.+.+.... .....+.+.++.+++ .+++ .+..||+||+||+.+|
T Consensus 85 q~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 85 QDVTLFYGTLRDNITLGAPL----ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCCccccchHHHHhhcCCCC----CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 110000 011111111110 112345566777776 3333 3469999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLI 229 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~ 229 (317)
+++||||++||+.....+.+.+. ...++|++||+.+..+.+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 89999999999998766555554 335899999997654443
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-23 Score=190.26 Aligned_cols=163 Identities=19% Similarity=0.135 Sum_probs=110.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee---EEEEECCeeEEEecCCCccccccCCch
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP---GIIHYNDTKIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~---G~i~~~g~~i~~~d~~g~~~~~~~~~~ 128 (317)
-.++++++.+|+++||+|+||||||||+++|+|...| .+ |.|.++|.++...+.. . .....+
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~---~-~~~~ig 87 (282)
T PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVW---D-IREKVG 87 (282)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHH---H-HHhheE
Confidence 3678899999999999999999999999999999877 55 8999999875321100 0 011112
Q ss_pred hHHHHHh----hhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~----~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+.+|... .....+++.+.... .......+.+.++++.+++ ..++++..||+||+||++|| +++
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2111110 01112222221111 1122223457788999999 67889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHH
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLI 229 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~ 229 (317)
||||++||+.....+.+.+ ... + ++|++||+......+
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA 210 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 9999999999866555544 332 4 999999997654433
No 174
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=185.85 Aligned_cols=155 Identities=25% Similarity=0.318 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~~~~~~~~~~~ 139 (317)
..|||||+||+|||||||.|+|.... |+++||+|||+..|.+.|.|..+.++||+|+....... ..+..|....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999865 99999999999999999999999999999997544222 2345567778889
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|+++|++|+...... .+.+.++|
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~L------------------------------------------------------- 108 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKIL------------------------------------------------------- 108 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999998753221 11222211
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-HHh--cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-KLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. +..+|+++|+||+|....+... +++ .+..+++|||..|.|+++|++.+.+.++
T Consensus 109 --------------r--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 109 --------------R--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --------------H--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 1 1248999999999988544332 333 3567999999999999999999999984
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-23 Score=205.02 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=109.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... + ........++.+|
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~--~~~~~~~i~~v~q 345 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P--LDAVKKGMAYITE 345 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H--HHHHHCCcEEccC
Confidence 578899999999999999999999999999999988 8999999987652110 0 0000111222222
Q ss_pred HH---hhh---ccCcEEEEEec----------C-CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE----
Q 021103 133 VI---AVS---KSSDIVLMVLD----------A-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 133 ~~---~~~---~~~d~i~~v~~----------~-~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---- 188 (317)
.. ..+ ...+.+.+... . .........+.++|+.+++ ..++++.+|||||+||+.||
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 10 011 11122211100 0 0111223456788999998 36888999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+ ...+ ++|++|||.. +..+||
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD 477 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 9999999999999866555554 3334 9999999954 444444
No 176
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.6e-24 Score=190.19 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+...+ ....++.+|
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 88 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKEV----ARRIGLLAQ 88 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHHH----hhheEEeec
Confidence 578888889999999999999999999999999887 88999999986532211000 001111111
Q ss_pred HHhhhc---cCcEEEEE----ec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK---SSDIVLMV----LD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v----~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+. .. ..........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 111000 01111100 00 00111233457788999998 57889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+++.+ .. .+ ++|++||+.. +.+++|
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999866655544 33 24 8999999965 455554
No 177
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.6e-24 Score=207.00 Aligned_cols=165 Identities=21% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 87 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHK---LAAQLGIGIIYQ 87 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHH---HHHHCCeEEEee
Confidence 578899999999999999999999999999999987 899999999765321100 000011222222
Q ss_pred HHhhhc---cCcEEEEEec------CC---CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSK---SSDIVLMVLD------AS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~------~~---~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+. ..+++.+... .. ........+.++|+.+++ ..++++.+|||||+||+.|| +
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 211111 1122211110 00 011223567788999999 57888999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
++||||++||+.....+++. +...+ ++|++|||.. +..++|+
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999986665544 43334 8999999944 4455554
No 178
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=2e-21 Score=180.45 Aligned_cols=159 Identities=28% Similarity=0.405 Sum_probs=115.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCC-chhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||||+|+|....++++||||+++..+.+.+ +|.++.++||||+....... ..........+..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ 268 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVRE 268 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999998866889999999999999999 67899999999985432221 1223334456778
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|++.+.... .+.. ...+++.+.
T Consensus 269 ADlil~VvD~s~~~~~~-~~~~-----------------------------------------~~~~L~~l~-------- 298 (351)
T TIGR03156 269 ADLLLHVVDASDPDREE-QIEA-----------------------------------------VEKVLEELG-------- 298 (351)
T ss_pred CCEEEEEEECCCCchHH-HHHH-----------------------------------------HHHHHHHhc--------
Confidence 99999999987653211 1110 111111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc-CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR-QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~-~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
...+|+++|+||+|+...+....... ...++++||+++.|+++|.+.|.+.
T Consensus 299 ----------------~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 299 ----------------AEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ----------------cCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 01479999999999986544443322 3458999999999999999998764
No 179
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=1e-23 Score=186.98 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=102.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+.... .....++.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 82 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----------TSGTILFKGQDLLELEPDER---ARAGLFLA 82 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CcceEEECCEecCCCCHHHh---hccceEee
Confidence 5778888899999999999999999999999995 45 78999999976532110000 00001111
Q ss_pred HHHHhhhcc---CcEEEEEec---------CCCchhhHHHHHHHHHHcccc---ccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVLD---------ASKSEGHRQILTKELEAVGLR---LNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~---------~~~~~~~~~~~~~~L~~~~l~---~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.|....+.. .+++.+... ........+.+.+.++.+++. .++++. .||+||+||+.+|
T Consensus 83 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~ 162 (243)
T TIGR01978 83 FQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLE 162 (243)
T ss_pred eccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence 111111100 000000000 001111234577888999882 456666 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+ ... .++|++||+....
T Consensus 163 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 163 PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL 207 (243)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH
Confidence 9999999999999866555544 333 4899999996543
No 180
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2e-23 Score=203.66 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|..+| .+|.|.++|.++... .+. .......++.+|
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~-~~~--~~~~~~i~~~~q 335 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIR-SPR--DAIRAGIMLCPE 335 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCC-CHH--HHHhCCCEEcCc
Confidence 678899999999999999999999999999999987 899999998765311 000 000111111122
Q ss_pred HHh---hh---ccCcEEEEEecC--------CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VIA---VS---KSSDIVLMVLDA--------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~---~~---~~~d~i~~v~~~--------~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
... .+ ...+.+.+.... .......+.+.++|+.+++ ..++++..|||||+||+.+|
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 110 01 111222111100 0111223457789999998 36888999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHH---hccc-CcEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE---YKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~---l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+++. +... .++|++|||.+ +.++|++
T Consensus 416 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 416 KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 999999999999987666554 4443 49999999954 4444443
No 181
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-23 Score=189.11 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=116.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ .. ......++..
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~---~~-~~~~~i~~v~ 87 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAEN---VW-NLRRKIGMVF 87 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCC---HH-HHhcceEEEE
Confidence 3678888899999999999999999999999999988 8999999997653211 00 0111122222
Q ss_pred HHHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ........+.+..+++.+++ ..++++..||+||+||+.|| +++|||
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 88 QNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred ECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2110 01 11122211111 11111223456788888888 67888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ .. ..++|++||+......+| .+++++..-+.
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d----------~i~~l~~G~i~ 219 (277)
T PRK13642 168 TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSD----------RILVMKAGEII 219 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCC----------EEEEEECCEEE
Confidence 9999999866665554 33 238999999966544333 45666655443
No 182
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.4e-23 Score=181.69 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=104.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++.. +.+. ...++..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~~~----~~~~~~~~ 80 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PDVA----EACHYLGH 80 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hhhH----hhcEEecC
Confidence 578889999999999999999999999999999887 88999999876421 1100 00011100
Q ss_pred HHhh---hccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.... ....+.+.+...... .....+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0000 000111111001111 112347788999998 56788899999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~ 225 (317)
|+.....+++.+. .. .++|++||+.+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 9998666555543 23 489999999653
No 183
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.1e-23 Score=180.58 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=105.0
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC--CCccccccCCchhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL--PGIIEGASEGKGRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~--~g~~~~~~~~~~~~~ 131 (317)
++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+. .++..+.. ..
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~-~~---- 81 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNINNIAKPYCTYIGHNL-GL---- 81 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCcccChhhhhhEEeccCCc-CC----
Confidence 47888999999999999999999999999999888 89999999876532110 01111000 00
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.......+++.+..... .....+.++++.+++ ..++.+..||+||+||++++ +++||||++||+
T Consensus 82 --~~~~tv~~~l~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 82 --KLEMTVFENLKFWSEIY---NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred --CccCCHHHHHHHHHHhc---ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 00000001110000000 012356677888888 57888999999999999988 999999999999
Q ss_pred HHHHHHHHHhc---cc-CcEEEecCCCChhhHHH
Q 021103 201 KLCYQILHEYK---IH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~~ 230 (317)
.....+.+.+. .. .+++++||+....+.++
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccccchhh
Confidence 98666555443 23 48999999966444343
No 184
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.88 E-value=1.1e-23 Score=188.52 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=112.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-----EEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-----i~~~d~~g~~~~~~~~~ 127 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +.-.+............
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i 91 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHHHHHHHhhcce
Confidence 578888899999999999999999999999999988 88999999876 32111000000000011
Q ss_pred hhHHHHHh--hh---ccCcEEEEE---ecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIA--VS---KSSDIVLMV---LDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~--~~---~~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++.+|... .. ...+.+.+. ............+.++++.+++ ..++.+..||+||+||+.+|
T Consensus 92 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~ 171 (258)
T PRK11701 92 GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR 171 (258)
T ss_pred EEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 11111100 00 000000000 0000111223456778889988 35788999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ .. ..++|++||+.... +.+| .+++++..-+.
T Consensus 172 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d----------~i~~l~~g~i~ 231 (258)
T PRK11701 172 LVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH----------RLLVMKQGRVV 231 (258)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 9999999999999866555544 33 34999999996544 3444 35566655443
No 185
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-23 Score=190.14 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. .....-........++..
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~ 96 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVF 96 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccHHHHhccEEEEE
Confidence 578889999999999999999999999999999988 88999999876531 000000000001111111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+++.+... ..........+.++++.+++ ..++++..||+||+||+++| +++||
T Consensus 97 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 176 (289)
T PRK13645 97 QFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176 (289)
T ss_pred eCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 110 00 001111111100 11111223456678888888 36788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHH
Q 021103 194 PLTHVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
||++||+.....+++. +.. ..++|++||+.+ +.+++|
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999986665444 432 238999999955 344444
No 186
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-23 Score=186.57 Aligned_cols=171 Identities=18% Similarity=0.116 Sum_probs=107.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...|.. ..+.+|.|.++|.++...+... .......++..
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~~~ 91 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE------EARVEGEVRLFGRNIYSPDVDP--IEVRREVGMVF 91 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccCh--HHHhhceeEEe
Confidence 367889999999999999999999999999999986510 0024899999998763111000 00011111111
Q ss_pred HHHhhhcc---CcEEEEEecCC----CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
|....+.. .+++.+..... ........+.++++.+++ ..++++..||+||+||+++| +
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 92 QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred cCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 21111111 11111110000 111222356677888876 25778999999999999988 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.....+.+.+. ...++|++||+... ..++|
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCC
Confidence 9999999999998665555443 33599999999653 44443
No 187
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.88 E-value=9.1e-24 Score=184.93 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=106.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec--CCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD--LPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d--~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||+|||||+++|+|...| .+|.|.++|.++...+ ..++..+...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~~~~~~~~~q~~~----- 80 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKDLHKIGSLIESPP----- 80 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccccccEEEEcCCCC-----
Confidence 577888889999999999999999999999999888 8999999987642110 0111111000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
........+.+.+...... .....+.++++.+++ ..++.+..||+||+||+.++ +++||||++||
T Consensus 81 --~~~~~t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 81 --LYENLTARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred --ccccCCHHHHHHHHHHHcC--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 0000000111110000001 112456788899998 57888999999999999988 99999999999
Q ss_pred HHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHH
Q 021103 200 EKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 200 ~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~ 231 (317)
+.....+.+.+ ...+ ++|++||+.+. .+.+++
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADH 193 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE
Confidence 99865554444 3334 89999999654 344543
No 188
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.3e-23 Score=202.75 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 80 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSS---KEALENGISMVHQ 80 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCH---HHHHhCCEEEEec
Confidence 578889999999999999999999999999999888 89999999986532110 0000111222222
Q ss_pred HHhhh---ccCcEEEEEec---C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS---KSSDIVLMVLD---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~---~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+... . .......+.+.++++.+++ ..++++.+|||||+||+.+| +++||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11111 11222222111 0 0111223467788999998 56888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---HhcccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILH---EYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~---~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+.+ .+...+ ++|++|||.+ +..+||+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 999999998666644 443334 8999999954 4455554
No 189
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.88 E-value=1.7e-23 Score=187.70 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+ +.+|.|.++|.++...+. +.-........++.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--------~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK--------SAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC--------CCceEEEECCEecccccccchhHHHHHhheEEEc
Confidence 57788888999999999999999999999999987610 135999999987642110 000000000111111
Q ss_pred HHHhhhcc---CcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSKS---SDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+.. .+.+.+... ..........+.++++.+++ ..++.+..||+||+||+.++
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred cccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence 11111110 111110000 00012234467889999999 57889999999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE 221 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999865554444 32 248999999976 455554
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-23 Score=209.35 Aligned_cols=177 Identities=18% Similarity=0.136 Sum_probs=117.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+..|+++||+|+||||||||+++|+|+..| .+|.|.++|.++...+.... ......+++++|
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~i~~v~Q 408 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKL-QALRRDIQFIFQ 408 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHH-HHhcCCeEEEec
Confidence 578899999999999999999999999999999988 88999999986532210000 000111222222
Q ss_pred HH--hhhcc---CcEEEEEec--CC-CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VI--AVSKS---SDIVLMVLD--AS-KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~--~~~~~---~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.. ..+.. .+.+.+... .. ......+.+.++|+.+++ ..++++.+|||||+||++|| |++|
T Consensus 409 ~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 409 DPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21 01111 111111010 00 112233567889999999 36889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. ..++|++|||... ..++| .++++...-++
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~d----------ri~vl~~G~iv 543 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISH----------RVAVMYLGQIV 543 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866665555 32 2389999999553 34443 45666655443
No 191
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2e-23 Score=197.43 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=126.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+++||+|.||||||||+|+|+|.++| ++|+|.++|.++.+.++ .+....++..++
T Consensus 24 L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~sp---~~A~~~GI~~V~ 89 (500)
T COG1129 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFSSP---RDALAAGIATVH 89 (500)
T ss_pred eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCCCH---HHHHhCCcEEEe
Confidence 3678888999999999999999999999999999998 99999999998876432 122334555566
Q ss_pred HHHhhhccC---cEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSKSS---DIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~~~---d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|.+..+++. +++.+..... +.......+.++|..+++ ..+.++.+||+||+|.+.|| ++|
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666665553 4443322211 123345667888998887 58889999999999999998 999
Q ss_pred cCCCCCCCHHHHHH---HHHHhcccC-cEEEecCC-CChhhHHHHH
Q 021103 192 TLPLTHVDEKLCYQ---ILHEYKIHN-AEVLFRED-ATVDDLIDVI 232 (317)
Q Consensus 192 DEPt~~LD~~~~~~---~l~~l~~~~-~~i~~shd-~~~~~~~~~~ 232 (317)
||||+.|+...... +++.++..+ ++|++||. .++-++||++
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE
Confidence 99999999887554 555566666 99999998 5666777664
No 192
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.3e-21 Score=183.76 Aligned_cols=172 Identities=24% Similarity=0.364 Sum_probs=123.9
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--.-|||||+||||||||||+|++..+.+++|||||+.|..|.+.+.+ ..+.++||||+......+.+...++
T Consensus 152 ~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~ 231 (390)
T PRK12298 152 LKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRF 231 (390)
T ss_pred EEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHH
Confidence 334444456799999999999999999999887899999999999999999875 5699999999987665555555667
Q ss_pred HhhhccCcEEEEEecCCCc--hhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 134 IAVSKSSDIVLMVLDASKS--EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
+..+..++++++++|.... ....+... .+++++.
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~--------------------------------------------~l~~eL~ 267 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENAR--------------------------------------------IIINELE 267 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHH--------------------------------------------HHHHHHH
Confidence 7778899999999987521 00101111 1111111
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc---C-CCeEEEeccccccHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR---Q-PNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~---~-~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ... ....+|.++|+||+|+...+++. .+.+ + ..++++||+++.++++|++.|
T Consensus 268 ~---------------~~~----~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I 328 (390)
T PRK12298 268 K---------------YSP----KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDL 328 (390)
T ss_pred h---------------hhh----hhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHH
Confidence 0 000 00147999999999998654332 2222 2 258999999999999999999
Q ss_pred HHHhCe
Q 021103 284 WEEMGL 289 (317)
Q Consensus 284 ~~~l~~ 289 (317)
.+.+..
T Consensus 329 ~~~L~~ 334 (390)
T PRK12298 329 MTFIEE 334 (390)
T ss_pred HHHhhh
Confidence 998864
No 193
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=2.4e-23 Score=184.72 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCcEEEEe-----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCC
Q 021103 53 EGFEVTKF-----GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEG 126 (317)
Q Consensus 53 ~~~~~~~~-----~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~ 126 (317)
.+|++.+. .|++++|+|+||||||||+++|+|...| .+|.|.++|..+.++... ....
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~~q~~~~~~----- 74 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYKPQYIKADY----- 74 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEecccccCCC-----
Confidence 35666665 5899999999999999999999999988 889999988766544211 1000
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
...+.+.+... ...... ......++++.+++ ..++++..|||||+||++|| +++||||
T Consensus 75 ~~tv~e~l~~~---------~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 75 EGTVRDLLSSI---------TKDFYT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCCHHHHHHHH---------hhhccc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00011111110 000000 11235567888888 57888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh
Q 021103 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~ 225 (317)
++||+.....+.+ .+.. ..++|++|||...
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999998665544 4432 3499999999553
No 194
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=1.3e-22 Score=203.85 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCcccccc-CCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGAS-EGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~-~~~~~~ 130 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++. +.. ......
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~~igyv~------Q~~~~~l~~~ 588 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKVRMAVFS------QHHVDGLDLS 588 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCceeEEEEe------ccccccCCcc
Confidence 467899999999999999999999999999999988 7899988653 233322 110 000000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
......+ .... +....+.+..+|+.+++ ..++++..|||||+||++|| +++||||++|
T Consensus 589 ~~~~~~~---------~~~~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 589 SNPLLYM---------MRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred hhHHHHH---------HHhc-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 0000000 0000 01123467889999998 35788999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
|+.....+++.+.. .+++|++|||..+
T Consensus 659 D~~s~~~l~~~L~~~~gtvIivSHd~~~ 686 (718)
T PLN03073 659 DLDAVEALIQGLVLFQGGVLMVSHDEHL 686 (718)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 99998888887764 4699999999553
No 195
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-23 Score=204.12 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|..+| +|.+|.|.++|.++...+. ....+...++.+|
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 89 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNI---RDTERAGIAIIHQ 89 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCH---HHHHHCCeEEEEe
Confidence 678899999999999999999999999999999864 1268999999987532110 0000111222222
Q ss_pred HHhhh---ccCcEEEEEecC-----CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS---KSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~-----~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++.+|||||+||+.+| +++||
T Consensus 90 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 90 ELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred ccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21111 112222222111 1111223467888999999 57889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+++.+ ...+ ++|++|||.. +.+++|+
T Consensus 170 Pt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 170 PTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCE
Confidence 99999999866555544 3334 8999999954 4455554
No 196
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.7e-23 Score=184.05 Aligned_cols=164 Identities=15% Similarity=0.024 Sum_probs=105.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+. | ..|.+|.|.++|.++...+.+. .......++.+|
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~p~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 101 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY---P---EQRAEGEILLDGENILTPKQDI--ALLRAKVGMVFQ 101 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcceEEEECCEEccccccch--HHHhcceEEEec
Confidence 5788899999999999999999999999999997520 0 0126899999998753111000 000111222122
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .......+.+.++++.+++ ..++++.+||+||+||+++| +++|
T Consensus 102 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 181 (260)
T PRK10744 102 KPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD 181 (260)
T ss_pred CCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11111 111222111111 1111223456778888876 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT 224 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~ 224 (317)
|||++||+.....+++.+ ....++|++||+..
T Consensus 182 EPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~ 216 (260)
T PRK10744 182 EPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ 216 (260)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999865554444 33348999999954
No 197
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.8e-23 Score=170.94 Aligned_cols=157 Identities=24% Similarity=0.240 Sum_probs=114.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++|+.+.+|+.++++||+|||||||+|.++|...| ..|.|.++|.+|. -||- ..+.++
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~---gPga------ergvVF 80 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIE---GPGA------ERGVVF 80 (259)
T ss_pred hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEecc---CCCc------cceeEe
Confidence 3678899999999999999999999999999999988 8999999998764 2331 112223
Q ss_pred HHHhh---hccCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.-.. +...|++.|.+... .+....+.+.+.|..+|+ ..++++-+|||||+||+++| +++|||+
T Consensus 81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred ccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 32222 22344454444332 233345567788999999 56888999999999999998 8999999
Q ss_pred CCCCHHHHH---HH-HHHhcccC-cEEEecCCCChhhH
Q 021103 196 THVDEKLCY---QI-LHEYKIHN-AEVLFREDATVDDL 228 (317)
Q Consensus 196 ~~LD~~~~~---~~-l~~l~~~~-~~i~~shd~~~~~~ 228 (317)
..||.-... ++ ++..+..+ .++++|||.+.+-+
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 999976533 33 34444444 89999999665443
No 198
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.5e-23 Score=179.10 Aligned_cols=164 Identities=20% Similarity=0.180 Sum_probs=120.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCc-cccccCCchhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGI-IEGASEGKGRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~-~~~~~~~~~~~~ 131 (317)
+.++..++....||.|++|||||||+|+|+|+..| +.|.|.++|.-+ +|+ .|+ .+.....+++++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L--~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVL--VDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEe--ecccCCcccChhhheeeeEe
Confidence 34445555479999999999999999999999998 999999999764 343 233 233455667777
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
|....|++..+--....+... .......+....+|+ .++++|..||||||||++|+ ++||||++.||.
T Consensus 83 QDARLFpH~tVrgNL~YG~~~-~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK-SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred eccccccceEEecchhhhhcc-cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 776666665443332222111 123456677788899 89999999999999999998 899999999998
Q ss_pred HHHHHHHHHh---ccc-C-cEEEecCC-CChhhHHHH
Q 021103 201 KLCYQILHEY---KIH-N-AEVLFRED-ATVDDLIDV 231 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~-~~i~~shd-~~~~~~~~~ 231 (317)
....+++-.+ ..+ + .++++||. .++.++.|+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~ 198 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence 8766665544 322 3 89999999 667777765
No 199
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.88 E-value=2.2e-23 Score=182.14 Aligned_cols=167 Identities=21% Similarity=0.162 Sum_probs=110.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++...+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++...+. ..........++.+
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-~~~~~~~~~i~~~~ 88 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGASE-KELVQLRRNIGYIF 88 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcCH-hHHHHHHhheEEEc
Confidence 3678889999999999999999999999999999887 89999999987632110 00000001111111
Q ss_pred HHHhhhc---cCcEEEEEecCC---CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSK---SSDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+....+. ..+++.+..+.. ........+.++++.+++ ..++.+.+||+||+||+.++ +++|||
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111111 111111111111 111223457788999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~ 230 (317)
|++||+.....+++.+ .. ..++|++||+....+++|
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d 209 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVAD 209 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 9999999865555544 32 349999999976544443
No 200
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-23 Score=204.05 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++..|
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~---~~~~~~i~~v~q 86 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFASTT---AALAAGVAIIYQ 86 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHHhCCEEEEEe
Confidence 578899999999999999999999999999999888 899999998765321100 000111222222
Q ss_pred HHhhhc---cCcEEEEEe----cC-CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSK---SSDIVLMVL----DA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~----~~-~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+. ..+++.+.. .. .......+.+.++|+.+++ ..++++.+|||||+||+.+| +++||
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 211111 112222111 00 1112234567788999998 56788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+++.+. ..+ ++|++|||.+ +..+||+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~ 209 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA 209 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 999999998666655443 334 8999999954 4455554
No 201
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.9e-23 Score=182.47 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. .|.+|.|.++|.++.-.+.. ......++.+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~~~~G~i~~~g~~i~~~~~~----~~~~~i~~~~q 86 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--------AKIDGLVEIEGKDVKNQDVV----ALRKNVGMVFQ 86 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--------CCCceEEEECCEecccCCHH----HHhhhEEEEec
Confidence 5788999999999999999999999999999987420 12789999999876422110 00111222222
Q ss_pred HHhhh--ccCcEEEEEecCC----CchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVS--KSSDIVLMVLDAS----KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+ ...+++.+..... ........+.++++.+++. .++.+..||+||+||+++| +++
T Consensus 87 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 87 QPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred CCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1112221111000 1112334567788888882 5678899999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+.+. ...++|++||+.. +.+.+| .+++++...+.
T Consensus 167 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~i~~l~~G~i~ 220 (246)
T PRK14269 167 DEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVAD----------YTAFFHLGELI 220 (246)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCc----------EEEEEECCEEE
Confidence 99999999998666555543 3349999999955 444443 45666665544
No 202
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.6e-23 Score=184.45 Aligned_cols=181 Identities=16% Similarity=0.104 Sum_probs=112.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...+..+ .|.+|+|.++|.++...+.. . .......++.+|
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 100 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN------CRIEGKVSIEGEDIYEPDVD-V-VELRKNVGMVFQ 100 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccC------CCcceEEEECCEEcccccch-H-HHHhhhEEEEec
Confidence 578899999999999999999999999999999753000 01589999999875321100 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||
T Consensus 101 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 180 (258)
T PRK14268 101 KPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180 (258)
T ss_pred CCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11100 01111111110 01111122346678888876 25778899999999999998 89999
Q ss_pred CCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+.+.+ ....++|++||+... .++|| .++++++.-+.
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 232 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISD----------YTGFFLMGELI 232 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999865554444 333489999999553 34443 46677665443
No 203
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.8e-23 Score=201.87 Aligned_cols=165 Identities=11% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+++||+|+||||||||+++|+|... + .+|.|.++|.++.... + ........++..
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-----------~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~ 344 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-----------WEGEIFIDGKPVKIRN-P--QQAIAQGIAMVP 344 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-----------CCcEEEECCEECCCCC-H--HHHHHCCCEEeC
Confidence 57889999999999999999999999999999986 5 7899999987653110 0 000011122222
Q ss_pred HHHh---h---hccCcEEEEEe-c-C-----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 132 QVIA---V---SKSSDIVLMVL-D-A-----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 132 ~~~~---~---~~~~d~i~~v~-~-~-----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
|... . +...+++.+.. . . .......+.+.++|+.+++ ..++++.+|||||+||+.||
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 345 EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred cchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCC
Confidence 2210 1 11122222110 0 0 0112233567889999998 35788999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+ +..+...+ ++|++|||.+ +.++||+
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999986555 44444434 9999999954 4455543
No 204
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.88 E-value=3e-23 Score=184.74 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++.. +.+... ..
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----l~-- 83 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKLRIGYVPQKLYLDTT----LP-- 83 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCccCEEEeccccccccc----cC--
Confidence 577889999999999999999999999999999888 8899999763 2333221 111100 00
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
......+. + .. ....+.+.++++.+++ ..++++..||+||+||+.+| +++||||++||
T Consensus 84 ~~~~~~~~------~--~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 84 LTVNRFLR------L--RP---GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred hhHHHHHh------c--cc---cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 00000000 0 00 0112356778889998 57888999999999999988 99999999999
Q ss_pred HHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 200 EKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+.....+.+.+ .. ..++|++||+.+. .+.++
T Consensus 153 ~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 153 VNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 99866655444 33 3489999999654 44444
No 205
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.88 E-value=1.1e-21 Score=175.02 Aligned_cols=172 Identities=30% Similarity=0.409 Sum_probs=133.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+.++..--.-|+|||.||||||||+++++...+.+++|||||+.|.-|.+.+. +..+.+.|.||+++.++.+.+.+.+
T Consensus 151 ~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~ 230 (369)
T COG0536 151 DLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLR 230 (369)
T ss_pred EEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHH
Confidence 455555555679999999999999999999999999999999999999999974 4558899999999999999999999
Q ss_pred HHhhhccCcEEEEEecCCCc-----hhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~-----~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
++..+..+.++++++|.... ..+.+.+...|+.+.-
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--------------------------------------- 271 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--------------------------------------- 271 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH---------------------------------------
Confidence 99999999999999997632 2233344444433211
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHHHH----hc---CCCeEEEeccccccHHHH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKL----AR---QPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~~l----~~---~~~~v~iSa~~~~~i~~l 279 (317)
.-..+|.++|+||+|+. +.+..+.+ .+ +...++||+.+++|++.|
T Consensus 272 ---------------------------~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 272 ---------------------------KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDEL 324 (369)
T ss_pred ---------------------------HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHH
Confidence 01258999999999955 44554432 22 222333999999999999
Q ss_pred HHHHHHHhCeeE
Q 021103 280 LARMWEEMGLVR 291 (317)
Q Consensus 280 ~~~i~~~l~~~~ 291 (317)
+..+.+.+...+
T Consensus 325 ~~~~~~~l~~~~ 336 (369)
T COG0536 325 LRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 206
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.2e-23 Score=181.81 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=109.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||+|||||+++|+|...| ..|.|.++|.++...+. .....++..
T Consensus 16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~ 78 (232)
T cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPP------HKRPVNTVF 78 (232)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcceEEEe
Confidence 3578888889999999999999999999999999988 88999999976532110 001111111
Q ss_pred HHHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
+....+. ..+++.+... ..........+..+++.+++ ..++.+..||+||+||+.++ +++||||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111110 0111111000 01122233456778888998 57888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhcc--cCcEEEecCCCC-hhhHHHH
Q 021103 196 THVDEKLCYQILH---EYKI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
++||+.....+.+ .+.. ..++|++||+.. +.+.+|+
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 9999998665544 4443 349999999964 4454443
No 207
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=9.3e-24 Score=185.73 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|+|.++|.++...+.. .......++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 82 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPH---ERARAGIAYVPQ 82 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHHHhCeEEecc
Confidence 578889999999999999999999999999999988 899999998765321100 000011111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHcc-c--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~-l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+.+.+....... ...+...+.++.++ + ..++++..||+||+||+.++ +++||||++
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~ 161 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 1111110 1111110000101 11223455666665 3 56888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHh---cc--cCcEEEecCCCC
Q 021103 198 VDEKLCYQILHEY---KI--HNAEVLFREDAT 224 (317)
Q Consensus 198 LD~~~~~~~l~~l---~~--~~~~i~~shd~~ 224 (317)
||+.....+.+.+ .. ..++|++||+.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 9999866555444 33 249999999954
No 208
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.9e-21 Score=177.13 Aligned_cols=171 Identities=26% Similarity=0.389 Sum_probs=125.9
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|||||.||||||||||+|++..+.+++|||||+.|..|.+.+ ++.++.++|+||+++......+...++
T Consensus 151 ~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~f 230 (335)
T PRK12299 151 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRF 230 (335)
T ss_pred EEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHH
Confidence 4445545678999999999999999999998877999999999999999998 567899999999987766666666777
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhccc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~ 213 (317)
+..++.++++++++|...... .+.+..+ ..++..
T Consensus 231 lrhie~a~vlI~ViD~s~~~s-~e~~~~~--------------------------------------------~~EL~~- 264 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVDP-VEDYKTI--------------------------------------------RNELEK- 264 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCCC-HHHHHHH--------------------------------------------HHHHHH-
Confidence 778888999999999864321 1111111 111110
Q ss_pred CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-----HH-hcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KL-ARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 214 ~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-----~l-~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......+|+++|+||+|+....... .. ... ..++++||+++.|+++|.+.|.+.
T Consensus 265 ------------------~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 265 ------------------YSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred ------------------hhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 00001247999999999997543211 11 122 468899999999999999999987
Q ss_pred hCe
Q 021103 287 MGL 289 (317)
Q Consensus 287 l~~ 289 (317)
+..
T Consensus 327 l~~ 329 (335)
T PRK12299 327 LEE 329 (335)
T ss_pred HHh
Confidence 753
No 209
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.87 E-value=4.3e-23 Score=184.10 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=103.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-----EEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-----i~~~d~~g~~~~~~~~~ 127 (317)
.++++++..|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +...+............
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i 88 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHHHHHHhhhcce
Confidence 577888889999999999999999999999999888 88999998765 32111000000000011
Q ss_pred hhHHHHHh--hh---ccCcEEEE---EecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIA--VS---KSSDIVLM---VLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~--~~---~~~d~i~~---v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++..|... .. ...+.+.. .............+.++++.+++ ..++.+..||+||+||+++|
T Consensus 89 ~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 168 (253)
T TIGR02323 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPR 168 (253)
T ss_pred EEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCC
Confidence 11111100 00 00000000 00000011123456788899988 45778999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCCh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATV 225 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~ 225 (317)
+++||||++||+.....+++.+. . ..++|++||+...
T Consensus 169 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999998666555443 2 3499999999553
No 210
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.9e-21 Score=185.91 Aligned_cols=182 Identities=30% Similarity=0.412 Sum_probs=131.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
..+.++..--..|+|||.||||||||||+|++..+.+++|||||++|..|.+.+++.++.++|+||+++......+...+
T Consensus 150 ~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~ 229 (500)
T PRK12296 150 RDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLD 229 (500)
T ss_pred EEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHH
Confidence 34556666678899999999999999999999987799999999999999999999999999999998766665566667
Q ss_pred HHhhhccCcEEEEEecCCCch------hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSE------GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~ 206 (317)
++..+..++++++++|..... .+.+.+...|..+.-.+.. |+
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~---------------------~~----------- 277 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG---------------------DL----------- 277 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc---------------------cc-----------
Confidence 777788899999999975321 1112222222211000000 00
Q ss_pred HHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-----HHhc-CCCeEEEeccccccHHHHH
Q 021103 207 LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KLAR-QPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 207 l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-----~l~~-~~~~v~iSa~~~~~i~~l~ 280 (317)
.. .....+|+|+|+||+|+....+.. .+.. ...++++||.++.|+++|.
T Consensus 278 -----------------~~--------~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 278 -----------------GL--------GDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELS 332 (500)
T ss_pred -----------------hh--------hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 00 001247999999999997543321 1222 2468999999999999999
Q ss_pred HHHHHHhCeeE
Q 021103 281 ARMWEEMGLVR 291 (317)
Q Consensus 281 ~~i~~~l~~~~ 291 (317)
+.|.+.+...+
T Consensus 333 ~~L~ell~~~r 343 (500)
T PRK12296 333 FALAELVEEAR 343 (500)
T ss_pred HHHHHHHHhhh
Confidence 99998886654
No 211
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=3.5e-23 Score=181.55 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=105.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 94 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-----------QGGQVLLDGKPISQYEHKY----LHSKVSLVG 94 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCCchHHcCHHH----HHhhEEEEe
Confidence 3678899999999999999999999999999999988 8899999987653211000 001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+....+ ...+++.+......... ....+.++++.+ ++ ..+.++.+||+||+||+.+| +++
T Consensus 95 q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 174 (226)
T cd03248 95 QEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLIL 174 (226)
T ss_pred cccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 11222222111111100 111245667777 66 56788999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
||||++||+.....+.+.+. ...++|++||+.+...
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 175 DEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999999998666555443 3348999999965443
No 212
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3e-23 Score=185.64 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. + .|++|.|.++|.++...+.. . .......++.++
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~---~---~~~~G~I~~~g~~~~~~~~~-~-~~~~~~i~~~~q 92 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP---G---ARVEGEVLLDGEDLYGPGVD-P-VAVRRTIGMVFQ 92 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc---C---CCcceEEEECCEeccccccC-h-HHHhcceEEEcc
Confidence 57888999999999999999999999999999975300 0 02589999999765311100 0 000111111111
Q ss_pred HHhhhcc---CcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+.. .+++.+..... ......+.+.++++.+++ ..++.+.+||+||+||+++| +++
T Consensus 93 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (258)
T PRK14241 93 RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172 (258)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111110 11111100000 111223456677888876 35678899999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+ +..+....++|++||+.. +.+++|
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 173 DEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999999999885554 444433359999999955 344443
No 213
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.6e-23 Score=184.91 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|++|.|.++|.++...+.. . .......++.+|
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~v~~~g~~i~~~~~~-~-~~~~~~i~~v~q 101 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE------GCSLKGRVLFDGTDLYDPRVD-P-VEVRRRIGMVFQ 101 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccCC-H-HHHhhceEEEcc
Confidence 57889999999999999999999999999999875200 002789999999876321100 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVS--KSSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+ ...+++.+...... .....+.+.++++.+++ ..++++.+||+||+||+++| +++|||
T Consensus 102 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 181 (269)
T PRK14259 102 QPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181 (269)
T ss_pred CCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11111 11122211111110 11123345667777765 35778899999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEec
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNK 247 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK 247 (317)
|++||+.....+.+.+ ....++|++||+.. +.+++ ..+++++.
T Consensus 182 t~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~----------d~i~~l~~ 228 (269)
T PRK14259 182 CSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS----------DMTAFFNA 228 (269)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----------CEEEEEec
Confidence 9999998865554444 33348999999954 44444 34666664
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.7e-23 Score=181.76 Aligned_cols=169 Identities=12% Similarity=0.081 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..+
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 84 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-----------QKGQILIDGIDIRDISRKS----LRSMIGVVLQ 84 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEeHHHcCHHH----HhhhEEEecC
Confidence 578899999999999999999999999999999988 8899999987653211100 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+..... . ...+.+.++.+ ++ ..++++..||+||+||+.+|
T Consensus 85 ~~~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 85 DTFLFSGTIMENIRLGRPNA-T---DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred CchhhhhHHHHHHhccCCCC-C---HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 1111111111111 1 11222223322 22 34556789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+++||||++||+.....+.+.+ ....++|++||+......+ ..+++++...+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----------d~i~~l~~g~~ 215 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA----------DKILVLDDGKI 215 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC----------CEEEEEeCCeE
Confidence 9999999999998866554444 3334899999996544333 34566665544
No 215
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=4.4e-23 Score=200.76 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. . .....++..|
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~---~-~~~~i~~~~q 84 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFE---Q-LQKLVSDEWQ 84 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHH---H-HHHHhceecc
Confidence 578888899999999999999999999999999888 889999887654211100 0 0000111111
Q ss_pred HHh--hhccC-cEE-EEEecCC-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIA--VSKSS-DIV-LMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~--~~~~~-d~i-~~v~~~~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
... .+... ... +.+.+.. ......+++.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (490)
T PRK10938 85 RNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD 164 (490)
T ss_pred CcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 100 00000 000 0000000 011223467788999999 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+.+.+ ...+ ++|++||+.. +.++||+
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 165 GLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCE
Confidence 99999866555544 3334 9999999944 4455554
No 216
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=6.3e-23 Score=180.48 Aligned_cols=176 Identities=22% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|. ..+.+|.|.++|.++...+.. ....++..|
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-------~~~~~G~i~~~g~~~~~~~~~------~~~i~~~~q 69 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG-------LTQTSGEILLDGRPLLPLSIR------GRHIATIMQ 69 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc-------cCccccEEEECCEechhhhhh------hheeEEEec
Confidence 4678888899999999999999999999999998651 002589999999775321110 001111111
Q ss_pred HHh-hh----ccCcEEEEEec--CCCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA-VS----KSSDIVLMVLD--ASKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~-~~----~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .+ ...+.+.+... ........+.+.++++.+++. .++.+..||+||+||+++| +++
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 100 00 00000000000 001122334577889999883 5778999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||......+ +..+.. ..++|++||+.+ +..++| .+++++...+.
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d----------~i~~l~~G~i~ 205 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIAD----------EVAVMDDGRIV 205 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999886555 444433 238999999954 334443 45666655443
No 217
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.5e-23 Score=206.36 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=116.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-----ecCCCccc-----c
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-----LDLPGIIE-----G 122 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-----~d~~g~~~-----~ 122 (317)
.+++|++..|+++||+|+||||||||+++|+|...| .+|.|.++|..+.- ++...... .
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHHHHHHH
Confidence 578899999999999999999999999999999988 78999998865410 00000000 0
Q ss_pred ccCCchhHHHHH--hhh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE-
Q 021103 123 ASEGKGRGRQVI--AVS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 123 ~~~~~~~~~~~~--~~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia- 188 (317)
....+++++|.. ... ...+.+.+... ........+++.++|+.+|+ .+++++.+|||||+||+.||
T Consensus 102 r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred hCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHH
Confidence 001122222221 011 11111111111 11112233567788999998 26789999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHH---HHHHhccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQ---ILHEYKIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~---~l~~l~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|++||||++||+..... +++.+... + ++|++|||.. +.++|| .++++++.-+..
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad----------ri~vl~~G~i~~ 249 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD----------RVLVMYQGEAVE 249 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEeeCCeecc
Confidence 99999999999998544 55555432 4 8999999954 445444 466776655543
No 218
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.7e-23 Score=181.13 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..+
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 83 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-----------DSGRILIDGHDVRDYTLAS----LRRQIGLVSQ 83 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-----------CCCEEEECCEEhhhCCHHH----HHhhEEEeCC
Confidence 578888889999999999999999999999999988 8999999997653211000 0001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhH-----HHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~-----~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+........... ..+.++++.+ ++ ..+.++..||+||+||+.+| +++|
T Consensus 84 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 163 (234)
T cd03251 84 DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD 163 (234)
T ss_pred CCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 10000 1111111111101110000 0123444444 33 45677899999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+.+.+ ....++|++||+.....
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 201 (234)
T cd03251 164 EATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIE 201 (234)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 999999999866555544 33348999999965433
No 219
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-22 Score=193.20 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=107.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|........+++... . .+.+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~l~~~----l-TV~E 104 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSGLNGQ----L-TGIE 104 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccccCCC----C-cHHH
Confidence 578899999999999999999999999999999988 89999999875321111122110 0 0111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.+.... ...........+.+.++++.+++ ..++++..|||||+||+++| +++||||++||+.
T Consensus 105 nL~l~~-------~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 105 NIELKG-------LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHHhhh-------hhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 111000 00011112223456678888988 67889999999999999988 9999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCCC-hhhHHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
....+++.+ ... .++|++||+.. +.++||+
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 866555544 333 48999999954 4444443
No 220
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.2e-23 Score=184.48 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=104.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. -.|.+|.|.++|.++...+.. .. ..+...++..|
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~I~~~g~~i~~~~~~-~~-~~~~~i~~v~q 107 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID------GCRVTGKITLDGEDIYDPRLD-VV-ELRARVGMVFQ 107 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEECcccccc-hH-HHhhceEEEec
Confidence 57889999999999999999999999999999975300 012689999999876321100 00 00011111111
Q ss_pred HHhhhc--cCcEEEEEe--cCC--CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK--SSDIVLMVL--DAS--KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~--~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.. ... ........+.++++.+++ ..++.+..||+||+||+++| +++
T Consensus 108 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 187 (267)
T PRK14235 108 KPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILM 187 (267)
T ss_pred CCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111110 011111110 000 111223456778888887 24677899999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
||||++||+.....+++.+ ....++|++||+...
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 9999999999866555544 333489999999543
No 221
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.9e-23 Score=182.44 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=111.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH---SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~---~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|.. ++ ++.+|.|.++|.++...+. .. .......++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~ 88 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---------TRLEGEIRIDGRNIYDKGV-QV-DELRKNVGM 88 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC---------CCCceEEEECCEecccccc-cH-HHHhhheEE
Confidence 5778888899999999999999999999999973 22 1147999999987642110 00 000111111
Q ss_pred HHHHHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+|....+. ..+++.+.... .......+.+.++++.+++ ..++++..||+||+||+.+| +
T Consensus 89 v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14245 89 VFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVL 168 (250)
T ss_pred EecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 111111110 01111111110 1111223456778888886 24678899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||||++||+.....+.+.+ ....++|++||+.. +.+.+| .+++++..-+.
T Consensus 169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d----------~v~~l~~G~~~ 224 (250)
T PRK14245 169 LMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSD----------KTAFFYMGEMV 224 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC----------EEEEEECCEEE
Confidence 999999999999866554444 33348999999955 344443 35566655443
No 222
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.9e-23 Score=183.92 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...... ..|.+|.|.++|.++...+ +.. .......++..|
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~v~q 109 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP------SARSEGEILYEGLNILDSN-INV-VNLRREIGMVFQ 109 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccC------CCCCceEEEECCEEccccc-ccH-HHHhccEEEEec
Confidence 57888899999999999999999999999999753100 0027899999998763211 000 000111122111
Q ss_pred HHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... .. ......+.+.+.++.+++ ..++++.+||+||+||+.|| +++|
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 111111 0111111110 00 011123345667777766 25678999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++|+ .+++++...+.
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~v~~l~~G~i~ 242 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSD----------RTAFFLNGDLV 242 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866554444 33358999999955 444443 45666655443
No 223
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=7.9e-23 Score=197.54 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=113.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecC-CCccccc------c
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDL-PGIIEGA------S 124 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~-~g~~~~~------~ 124 (317)
.++++.+.+|.++||||+|||||||||++|+|...| .+|.|.+.+ ..+.++.. +...... .
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~ 88 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI 88 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCCCcCCCccHHHHHH
Confidence 567788888999999999999999999999999988 889988754 34544321 1111000 0
Q ss_pred CCchhHHHHHhhhc-----cCcEEEE-------EecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---
Q 021103 125 EGKGRGRQVIAVSK-----SSDIVLM-------VLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS--- 188 (317)
Q Consensus 125 ~~~~~~~~~~~~~~-----~~d~i~~-------v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia--- 188 (317)
.+.....+....+. .++.... ............++...|..+|+ ..++++.+||||++.|+++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 89 EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred hhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 00000000000000 0111000 00000011123456778888888 33899999999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHHHHHhc-ccCcEEEecCC-CChhhHHHHHhc
Q 021103 189 ------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 189 ------lilDEPt~~LD~~~~~~~l~~l~-~~~~~i~~shd-~~~~~~~~~~~~ 234 (317)
|++||||||||.+++.-+-..+. ..+++|+|||| ..++.+|+.+..
T Consensus 169 ~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEE
Confidence 89999999999999877777775 44599999999 667888877654
No 224
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=4.6e-23 Score=201.37 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|..+| .+|.|.++|.++...+.. .......++.+|
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 345 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALSTA---QRLARGLVYLPE 345 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCcEECCC
Confidence 578899999999999999999999999999999888 889999998765321100 000011111111
Q ss_pred HH---hhhc---cCcEEEEE----ecC-CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------e
Q 021103 133 VI---AVSK---SSDIVLMV----LDA-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~---~~~~---~~d~i~~v----~~~-~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.. ..+. ..+.+... ... .......+.+.++|+.+++ ..++++.+|||||+||+.|| |
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 10 0000 01111000 000 0111233457788999998 36788999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
++||||++||+.....+.+.+ ... .++|++|||.. +.++||+
T Consensus 426 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred EECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999866655544 333 48999999954 4444443
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=8e-23 Score=199.39 Aligned_cols=166 Identities=12% Similarity=0.149 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|...| +.+|.|.++|.++.... + ........++..|
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~q 343 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN-P--AQAIRAGIAMVPE 343 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC-H--HHHHhCCCEEcCc
Confidence 578899999999999999999999999999999863 16899999987652100 0 0001112222222
Q ss_pred HHh---hhc---cCcEEEEEe-----cC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 133 VIA---VSK---SSDIVLMVL-----DA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 133 ~~~---~~~---~~d~i~~v~-----~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
... .+. ..+.+.+.. .. .........+.++|+.+++ ..++++..|||||+||+.||
T Consensus 344 ~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 423 (500)
T TIGR02633 344 DRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPR 423 (500)
T ss_pred chhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCC
Confidence 210 111 112222210 00 0112233467889999998 25788999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+ +..+...+ ++|++|||.. +.++||+
T Consensus 424 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 424 VLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999986654 45554444 9999999954 4455544
No 226
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.87 E-value=3.7e-23 Score=181.13 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=101.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHHHHHhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++... ...++..+...... .. .
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~---~~--~ 65 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGKGWRHIGYVPQRHEFAW---DF--P 65 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchHhhCcEEEecccccccC---CC--C
Confidence 3456999999999999999999999999887 899999998754100 00111111100000 00 0
Q ss_pred hccCcEEEEEe----cC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 137 SKSSDIVLMVL----DA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 137 ~~~~d~i~~v~----~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
....+.+.+.. .. .........+.++++.+++ ..++++..||+||+||+.++ +++||||++||
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00001110000 00 0111233457788999998 56788999999999999988 99999999999
Q ss_pred HHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHH
Q 021103 200 EKLCYQILHEYK---IHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~ 230 (317)
+.+...+.+.+. ..+ ++|++||+.. +.+++|
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 998665555443 334 8999999955 444444
No 227
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.8e-23 Score=182.48 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.-.+. .....++.++
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~~~~q 78 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDISYVPQ 78 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEEEEee
Confidence 578888889999999999999999999999999888 88999999976532110 0111111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 158 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence 1111111 11111100 001112223456778889998 67888999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.+...+.+.+ .. ..+++++||+.. +.+++|
T Consensus 159 gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 99999866655544 33 349999999954 344554
No 228
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=6e-23 Score=200.22 Aligned_cols=164 Identities=12% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.|.++|.++...+. ........++..|
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~~---~~~~~~~i~~v~q 334 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRSP---QDGLANGIVYISE 334 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCH---HHHHHCCCEEecC
Confidence 678999999999999999999999999999999988 89999999976532110 0000111222222
Q ss_pred HH---hhh---ccCcEEEEE----ecC----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VI---AVS---KSSDIVLMV----LDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~---~~~---~~~d~i~~v----~~~----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
.. ..+ ...+.+.+. ... .......+.+.++|+.+++ ..++++..|||||+||+.+|
T Consensus 335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 11 000 011111110 000 0111223467888999998 36888999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+.+. +...+ ++|++|||.. +.++||
T Consensus 415 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 415 KVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 999999999999986555444 43334 8999999954 344443
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=4.3e-23 Score=202.50 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|..+|.. ..|.+|.|.++|.++...+...+........++.+|
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 67889999999999999999999999999999986410 012589999999876432211000000011222222
Q ss_pred HHh--hh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc-c----ccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-~----~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... .. ...+.+.+... .........++.++|+.+++ . .++++.+|||||+||++|| ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 110 00 00011100000 11122234567888999998 2 4788999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~ 231 (317)
+||||++||+.....+++.+. . ..++|++|||.+ +..++|+
T Consensus 180 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226 (529)
T ss_pred EcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE
Confidence 999999999998666555443 2 248999999955 4455554
No 230
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=6.2e-23 Score=180.05 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~---~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++++.+|++++|+|+||||||||+++|+|... + .+|.+.++|.++...+ .....++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-----------~~G~i~~~g~~~~~~~-------~~~~i~~ 85 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-----------TSGQILFNGQPRKPDQ-------FQKCVAY 85 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-----------CceEEEECCEECChHH-------hcccEEE
Confidence 57888899999999999999999999999999987 6 7899999987642100 0111111
Q ss_pred HHHHHhhhc---cCcEEEEEe--cC-C-Cc-hhhHHHHHH-HHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSK---SSDIVLMVL--DA-S-KS-EGHRQILTK-ELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~---~~d~i~~v~--~~-~-~~-~~~~~~~~~-~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+|....+. ..+++.+.. .. . .. ......+.+ .++.+++ ..++.+..||+||+||+.++ +
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il 165 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence 111111110 011111100 00 0 01 111123344 7888887 46778899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCC--ChhhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDA--TVDDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~--~~~~~~~ 230 (317)
++||||++||+.+...+.+.+ ...+ ++|++||+. .+.+.+|
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCC
Confidence 999999999999866555544 3334 999999996 4566554
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1e-22 Score=198.19 Aligned_cols=165 Identities=9% Similarity=0.080 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|..+| .+|.|.++|.++.... + ........++.+|
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~-~--~~~~~~~i~~~~q 330 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHN-A--NEAINHGFALVTE 330 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCC-H--HHHHHCCCEEcCC
Confidence 578899999999999999999999999999999988 8999999987653211 0 0000011111111
Q ss_pred HH---hhhccC--------cEEEEEecC---CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VI---AVSKSS--------DIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~---~~~~~~--------d~i~~v~~~---~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
.. ..+... +.+...... .........+.++++.+++ ..++++.+|||||+||+.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 10 001100 001000000 0111223456788888888 35889999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+.+ .+... .++|++|||.+ +..+||+
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCE
Confidence 99999999999998666544 44433 49999999954 4444443
No 232
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.87 E-value=8.1e-23 Score=180.60 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. .....++.++
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~~------~~~~i~~~~q 79 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVHA------RDRKIGFVFQ 79 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcCEEEEec
Confidence 578888999999999999999999999999999887 88999999876532111 0111222222
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+.+.++++.+++ ..++.+..||+||+||+.++ +++||||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111 1111111111 1111223456788899988 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
+||+.+...+++.+ .. ..++|++||+.. +.+++|+
T Consensus 160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 99999866555544 33 349999999965 3555543
No 233
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-22 Score=178.96 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.....+. ..+|.|.++|.++...+...+ ....++.+|
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~---~~~G~i~~~g~~~~~~~~~~~----~~~~~~v~q 90 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA---RVTGDVTLNGEPLAAIDAPRL----ARLRAVLPQ 90 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCccccccc---CCceEEEECCEEcccCCHHHH----HhhcEEecc
Confidence 5788889999999999999999999999999998761000000 018999999987642221100 000011111
Q ss_pred HHh---hhccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------------
Q 021103 133 VIA---VSKSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------------- 188 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------------- 188 (317)
... .....+++.+... ........+.+.++|+.+++ ..++++..||+||+||+.++
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 100 0011111111100 00011233457788999998 57888999999999999774
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---ccc--CcEEEecCCCCh-hhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIH--NAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~--~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+++.+ ... .++|++||+... .+++|
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6889999999999866555544 332 389999999553 34443
No 234
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-22 Score=182.13 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+..+ .+.+|.|.++|.++...+.. . .......++.+|
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~q 100 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN------VKLTGEMNYNGSNILKGKVD-L-VELRKNIGMVFQ 100 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCC------CCCceEEEECCEEccccccC-H-HHHhhceEEEec
Confidence 578888999999999999999999999999998752000 01479999999876321100 0 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+..... ........+.++++.+++ ..++++.+||+||+||+.++ +++|
T Consensus 101 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 101 KGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred CCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111111 111111111111 111123346667888776 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+ .+....++|++||+.. +.+.+| .+++++..-+.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d----------~i~~l~~G~i~ 233 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSD----------QTAFFYMGELV 233 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999998655544 4434459999999954 344443 45566654443
No 235
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-22 Score=202.92 Aligned_cols=167 Identities=17% Similarity=0.115 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+.+|+++||+|+|||||||||++|+|...| ++|.|.++|.. +.++..... .......+++.
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~-~~~~~~~~~v~ 85 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETP-ALPQPALEYVI 85 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCC-CCCCCHHHHHH
Confidence 678899999999999999999999999999999888 89999987742 333321100 00011122222
Q ss_pred HHHhhhcc----------CcEEEEEe------cCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE----
Q 021103 132 QVIAVSKS----------SDIVLMVL------DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 132 ~~~~~~~~----------~d~i~~v~------~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---- 188 (317)
+....+.. .+....+. +.........++..+|+.+|+ ..++++..|||||+||+.||
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred HhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 21111000 00000000 000011123467888999998 35889999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
|++||||+|||+..+..+.+.+.. .+++|++|||.. +..+|+.
T Consensus 166 ~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCE
Confidence 999999999999998777666654 459999999954 4555554
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=7.1e-23 Score=201.00 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|.. + .+|.|+++|.++...+..... ..+...++.+|
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q 369 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLL-PVRHRIQVVFQ 369 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHH-HhhhceEEEEe
Confidence 5788999999999999999999999999999997 4 579999999876432210000 00111122122
Q ss_pred HH--hhh---ccCcEEEEEe--cC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VI--AVS---KSSDIVLMVL--DA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~--~~~---~~~d~i~~v~--~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. ..+ ...+++.+.. .. .........+.++|+.+++ ..++++.+|||||+||+.|| +++
T Consensus 370 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 370 DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 011 1111111110 00 1111233567788999998 36889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+++.+. . ..++|++|||.. +.++||
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcC
Confidence 99999999998666555443 3 248999999954 444444
No 237
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1e-22 Score=184.69 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=105.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .|.+|.|.++|.++...... . ...+...++.
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~--------~~~~G~I~~~g~~i~~~~~~-~-~~~~~~i~~v 125 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS--------CHTTGALMFDGEDIYGKFTD-E-VLLRKKIGMV 125 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC--------CCCceEEEECCEEhhhcccc-h-HHhhhcEEEE
Confidence 57889999999999999999999999999999753 10 01689999999765321100 0 0001111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .......+.+.++++.+++ ..++++..||+||+||+.+| ++
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll 205 (286)
T PRK14275 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILL 205 (286)
T ss_pred CCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111 00111111110 0 1111123456677777775 35778999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....+++.+. ...++|++||+... .+++|
T Consensus 206 LDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 206 LDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 999999999998666655543 33489999999554 44444
No 238
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=7.2e-21 Score=175.20 Aligned_cols=170 Identities=28% Similarity=0.412 Sum_probs=124.0
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|+|||.||||||||||+|++..+.+++|||||+.|..|.+.+++ ..+.++|+||+.+......+...++
T Consensus 150 ~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~f 229 (329)
T TIGR02729 150 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRF 229 (329)
T ss_pred EEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHH
Confidence 344444557899999999999999999999887799999999999999999987 8899999999987665555566677
Q ss_pred HhhhccCcEEEEEecCCCch--hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 134 IAVSKSSDIVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
+..+..++++++++|..... ...+.+.. +.+++.
T Consensus 230 lrhierad~ll~VvD~s~~~~~~~~e~l~~--------------------------------------------l~~EL~ 265 (329)
T TIGR02729 230 LKHIERTRVLLHLIDISPLDGRDPIEDYEI--------------------------------------------IRNELK 265 (329)
T ss_pred HHHHHhhCEEEEEEcCccccccCHHHHHHH--------------------------------------------HHHHHH
Confidence 77778899999999976431 11111111 111110
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc--CCCeEEEeccccccHHHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~--~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. .......+|+++|+||+|+......+ .+.+ ...++++||++++|+++|++.|.+
T Consensus 266 ~-------------------~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 266 K-------------------YSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred H-------------------hhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence 0 00001247999999999998654332 2222 135889999999999999999987
Q ss_pred Hh
Q 021103 286 EM 287 (317)
Q Consensus 286 ~l 287 (317)
.+
T Consensus 327 ~l 328 (329)
T TIGR02729 327 LL 328 (329)
T ss_pred Hh
Confidence 65
No 239
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.5e-22 Score=181.94 Aligned_cols=182 Identities=18% Similarity=0.153 Sum_probs=113.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|+++||+|+||||||||+++|+|...|... .|.+|.|.++|.++...+.+ . .......++.+
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 107 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN-V-YEMRKHIGMVF 107 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC-h-HHHhcceEEEe
Confidence 3578899999999999999999999999999999753000 02689999999876321100 0 00011112111
Q ss_pred HHHhhh--ccCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+ ...+++.+... .. ........+.+.++.+++ ..++++..||+||+||+++| +++
T Consensus 108 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 108 QRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred cCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 211111 11111211111 00 111223456677888776 35778999999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+ .+....++|++||+... .++|| .+++++...+.
T Consensus 188 DEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~i~~l~~G~i~ 241 (267)
T PRK14237 188 DEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASD----------YTAFFYLGDLI 241 (267)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcC----------EEEEEECCEEE
Confidence 99999999988655544 44333489999999643 34443 46667665544
No 240
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=180.03 Aligned_cols=168 Identities=18% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++.+|+.++|+|+||||||||+++|+|... |. .+++|.|.++|.++...+. ... ......++.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~v~~~g~~i~~~~~-~~~-~~~~~i~~~ 90 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS--------ARVTGKILLDDTDIYDRGV-DPV-SIRRRVGMV 90 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCC--------CCCceEEEECCEEcccccC-ChH-HhhccEEEE
Confidence 57888999999999999999999999999999975 30 0147999999987632110 000 001111111
Q ss_pred HHHHhhhcc---CcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 131 RQVIAVSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+|....+.. .+.+.+.... .......+.+.+.++.+++ ..+..+..||+||+||+++| +
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 91 FQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred ecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 221111111 1111111000 1111123456777888886 24567899999999999988 8
Q ss_pred eecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.+...+.+ .+....++|++||+... .++||
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCC
Confidence 9999999999998655544 44344599999999543 34444
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.1e-22 Score=163.47 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=123.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc--cccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~--~~~~~~~~~~~ 130 (317)
-+++++.+.|+.++++||+|+|||||++.|.-+..| .+|...+.|..+.+-.+|+- +...+...+++
T Consensus 19 fdi~l~~~~getlvllgpsgagkssllr~lnlle~p-----------~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmv 87 (242)
T COG4161 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87 (242)
T ss_pred eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-----------CCCeEEecccccccccCccHHHHHHHHHhhhhh
Confidence 466778888999999999999999999999877777 89999999888777666653 11233455666
Q ss_pred HHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 131 RQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
+|.+...++..++...+.+ ........++.++|.++.+ ..++.|-.|||||+||++|| +++||
T Consensus 88 fqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde 167 (242)
T COG4161 88 FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred hhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC
Confidence 6655444444443333222 1223345567788898888 78999999999999999998 88999
Q ss_pred CCCCCCHHHHHH---HHHHhcccC-cEEEecCCCChhhH
Q 021103 194 PLTHVDEKLCYQ---ILHEYKIHN-AEVLFREDATVDDL 228 (317)
Q Consensus 194 Pt~~LD~~~~~~---~l~~l~~~~-~~i~~shd~~~~~~ 228 (317)
||+.|||+...+ +++++..-+ +-+++||+.++++-
T Consensus 168 ptaaldpeitaqvv~iikel~~tgitqvivthev~va~k 206 (242)
T COG4161 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHh
Confidence 999999997554 555555555 88999999776653
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.87 E-value=5.8e-23 Score=181.46 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=101.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++.+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 83 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-----------ENGRVLVDGHDLALADPAW----LRRQVGVVLQ 83 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCeehHhcCHHH----HhhcEEEEcC
Confidence 578889999999999999999999999999999988 8999999997653211000 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhH-----HHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~-----~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+........... ..+.++++.+ ++ ..+.++.+||+||+||+.+| +++|
T Consensus 84 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (237)
T cd03252 84 ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163 (237)
T ss_pred CchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 11111 1112221111111110000 0122334443 23 34678899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+.+.+ ....++|++||+.....
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 999999999866555544 33348999999976443
No 243
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=179.94 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .+.+|.|.++|.++...+.. . .......++.
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~--------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 91 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE--------VTITGSIVYNGHNIYSPRTD-T-VDLRKEIGMV 91 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCC--------CCccceEEECCEECcCcccc-h-HhhhhcEEEE
Confidence 57888889999999999999999999999999853 30 01379999998765211000 0 0000111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .........+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 92 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 92 FQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111 11111111110 1 1111123456667777775 35778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||||++||+.....+.+.+. ...++|++||+.+ +.+.+ ..++++++..+.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~----------d~i~~l~~G~i~ 226 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS----------DRTGFFLDGDLI 226 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999998665554443 3359999999954 44444 346677665443
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.8e-23 Score=185.78 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=107.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+... .......++.+|
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~I~i~G~~i~~~~~~~--~~~~~~i~~v~q 127 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLID------AARVEGELTFRGKNVYDADVDP--VALRRRIGMVFQ 127 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccch--HhhhccEEEEec
Confidence 57888999999999999999999999999999975200 0016899999998753211000 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+++.+..... ........+.++++.+++ ..++++.+||+||+||++|| +++|||
T Consensus 128 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 128 KPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred CCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 011111100000 011223456778888876 35788999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
|++||+.....+.+.+ ....++|++||+... ..+++
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISD 247 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 9999999865554444 334599999999554 44444
No 245
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.6e-23 Score=181.63 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+.+. .......++.+|
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~q 93 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP------NCKVKGELDIDGIDVYSVDTNV--VLLRAKVGMVFQ 93 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC------CCCcceEEEECCEehHhcccch--HHHhhhEEEEec
Confidence 57888999999999999999999999999999975100 0026899999997653221100 000011111111
Q ss_pred HHhhhc--cCcEEEEEe---cCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK--SSDIVLMVL---DAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~---~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.. +.. ........+.++++.+++ ..++.+..||+||+||+.++ +++
T Consensus 94 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 173 (251)
T PRK14244 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLM 173 (251)
T ss_pred CcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111110 011111110 000 111123346677888887 24567899999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
||||++||+.....+.+.+ ....++|++||+... .+++| .+++++..-+
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d----------~i~~l~~G~i 226 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSD----------RVAFFQSGRI 226 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcC----------EEEEEECCEE
Confidence 9999999998865554444 333499999999553 34443 4566665443
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.87 E-value=1.4e-22 Score=179.08 Aligned_cols=173 Identities=17% Similarity=0.125 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+.++|+|+||||||||+++|+|..+| .+|.|.++|.++...+.. . .....++..|
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~---~-~~~~i~~~~q 84 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----------TSGEILLDGVDIRDLNLR---W-LRSQIGLVSQ 84 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEehhhcCHH---H-HHhhEEEECC
Confidence 578888899999999999999999999999999888 899999999765321100 0 0001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+............ .+.+++..+ ++ ..+..+.+||+||+||+.+| +++|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 164 (238)
T cd03249 85 EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD 164 (238)
T ss_pred chhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11000 11122221111111100000 112222222 22 35667889999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+.+....|| .+++++...+
T Consensus 165 EP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d----------~v~~l~~G~i 215 (238)
T cd03249 165 EATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNAD----------LIAVLQNGQV 215 (238)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC----------EEEEEECCEE
Confidence 999999999866555544 42238999999965444433 3566665544
No 247
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=6.2e-22 Score=171.54 Aligned_cols=176 Identities=17% Similarity=0.139 Sum_probs=122.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|++++++|+|||||||++++|+|...| .+|.+.++|..- ......+..+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-----------~~G~v~V~G~~P-----------f~~~~~~~~~ 98 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-----------TSGKVRVNGKDP-----------FRRREEYLRS 98 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-----------CCCeEEecCcCc-----------chhHHHHHHH
Confidence 688999999999999999999999999999999998 899999987531 1111111111
Q ss_pred HHhhhccCcEEEEEecCC----------C-c-hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKSSDIVLMVLDAS----------K-S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~----------~-~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+-...-+.+...+. + + ..-.++...+-+.+++ .++.++..||.||+.|+.+| +
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL 178 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence 111111111111111110 0 1 1123445556667777 58899999999999999887 8
Q ss_pred eecCCCCCCCHHH---HHHHHHHhccc--CcEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 190 NSTLPLTHVDEKL---CYQILHEYKIH--NAEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 190 ilDEPt~~LD~~~---~~~~l~~l~~~--~~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
++||||-|||... ++++++++... .|+++.||+ .+++.+|++ |+.+++..++.++.+..+.
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r----------v~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR----------VLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred EecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh----------eEEeeCCcEeecccHHHHH
Confidence 9999999999876 55666666532 399999999 778888876 6677888777766665543
No 248
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-22 Score=180.50 Aligned_cols=170 Identities=18% Similarity=0.134 Sum_probs=105.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. | ..+.+|.|.++|.++...+. .. .......++..|
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~~~~G~v~i~g~~~~~~~~-~~-~~~~~~i~~~~q 92 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI---E---NIKITGEIKFEGQNIYGSKM-DL-VELRKEVGMVFQ 92 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccc---c---CCCcceEEEECCEEcccccc-hH-HHhhccEEEEec
Confidence 5788888899999999999999999999999997510 0 00168999999976531100 00 000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD 172 (251)
T PRK14251 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD 172 (251)
T ss_pred CCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 11000 111111111110 1111123456677787776 24678899999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 193 LPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
|||++||+.....+.+.+. ...++|++||+... .+.+|
T Consensus 173 EP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 173 EPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcC
Confidence 9999999998665555443 33599999999653 44443
No 249
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=1.5e-22 Score=201.63 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=124.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+|.|+|...| ..|.|.++|.++..+|...++ +..+++.|
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-----------~~G~I~~dg~dl~~i~~~~lR----~~ig~V~Q 554 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-----------QQGRILLDGVDLNDIDLASLR----RQVGYVLQ 554 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEeHHhcCHHHHH----hheeEEcc
Confidence 578899999999999999999999999999999998 899999999998776643322 22232223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+ ..+....+.+.+.+...|. .+...-..||||||||+++|
T Consensus 555 ~~~Lf~gSI~eNi~l----~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 555 DPFLFSGSIRENIAL----GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred cchhhcCcHHHHHhc----CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 2221111 122211 1122222334444433333 33455678999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++|||||+||+++.+.+.+.+. .+.|+|+++|+...-+. ...|+|+.+.-++..+..+++
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~----------adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS----------ADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh----------ccEEEEccCCceeccCCHHHH
Confidence 99999999999999777777665 34699999999765543 456888888877655544443
No 250
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.87 E-value=1.3e-22 Score=182.43 Aligned_cols=166 Identities=20% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 96 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQR-KAFRRDIQMVFQ 96 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhHH-HHHHhcEEEEEc
Confidence 578899999999999999999999999999999887 89999999976533211000 000011111111
Q ss_pred HHh-hh-c---cCcEEEEEec---CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA-VS-K---SSDIVLMVLD---ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~-~~-~---~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .+ . ..+++.+... ..........+.++++.+++ ..++.+..||+||+||+++| +++|
T Consensus 97 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD 176 (268)
T PRK10419 97 DSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176 (268)
T ss_pred ChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 110 00 0 0011100000 01112233457788999888 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
|||++||......+ +..+.. ..++|++||+... .+++|
T Consensus 177 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 99999999875544 444443 3489999999553 34444
No 251
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.86 E-value=6.5e-21 Score=175.50 Aligned_cols=238 Identities=25% Similarity=0.356 Sum_probs=152.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASE 125 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~ 125 (317)
.++||||.||||||||||+|+|....+++|||||++|..|.+.+.+. ++.++|+||+.+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999988999999999999999998762 4899999999987777
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccceeeeeeEeeec
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 192 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ialilD 192 (317)
+.+.+.+++..++.+|++++++|+.. +..+.+.+...|....+ .+.++...+....+. .
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~-~------- 154 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKG-G------- 154 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-c-------
Confidence 66777889999999999999998742 22334445555554444 222222222211000 0
Q ss_pred CCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccC--C-ChhhHHHHhc-----C
Q 021103 193 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-GIDDVDKLAR-----Q 262 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~--~-~~~~~~~l~~-----~ 262 (317)
.+...--......+.+.+.. +..+ -..+++.+++ ..+.. ....+|+++|+|+.|. . ..+.++.+.+ .
T Consensus 155 ~~~~~~e~~~l~~v~~~Le~-~~~~-~~~~~~~~e~-~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~ 231 (364)
T PRK09601 155 DKEAKAELELLEKLLEHLEE-GKPA-RTLELTDEEE-KLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG 231 (364)
T ss_pred chhHHHHHHHHHHHHHHHHc-CCCc-ccCCCCHHHH-HHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcC
Confidence 00000000112223333322 2111 1123333332 22222 2346999999999985 2 3334444332 2
Q ss_pred CCeEEEecccc----------------------ccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 263 PNSVVISCNLK----------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 263 ~~~v~iSa~~~----------------------~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...+++||.-. .+++++....++.|+.+.+||.-+. +- +..++++|+|.
T Consensus 232 ~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~---ev-rawti~~GstA 302 (364)
T PRK09601 232 AEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPK---EV-RAWTIKKGTTA 302 (364)
T ss_pred CeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCC---eE-EEEEeCCCCch
Confidence 34777776321 3778889999999999999994433 22 68999999985
No 252
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=1.2e-22 Score=177.29 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=101.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+........+...++..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccccccccccchhhcceEEEEc
Confidence 3578899999999999999999999999999999987 88999999876542210000000011122222
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+ ...+++.+.... . .....+.++.+++ ..+.++..||+||+||+.||
T Consensus 86 q~~~~~~~t~~~nl~~~~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 86 QKPWLLNATVEENITFGSPF--N---KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred CCCccccccHHHHHhhcCcC--C---HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 211111 111111111110 1 1122334444443 12457889999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHH-----Hhccc-CcEEEecCCCChhh
Q 021103 189 -FNSTLPLTHVDEKLCYQILH-----EYKIH-NAEVLFREDATVDD 227 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~-----~l~~~-~~~i~~shd~~~~~ 227 (317)
+++||||++||+.....+++ .+... .++|++||+.....
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 99999999999998665544 44443 49999999965433
No 253
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-22 Score=180.23 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=109.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...|... ...+|.|.++|.++...+. .. .......++.+
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~~ 91 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG------ARVTGRILLDGQDIYGPRV-DP-VAMRRRVGMVF 91 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcC------CCCceeEEECCEEcccCcc-CH-HHhhceeEEEe
Confidence 3578888899999999999999999999999999865100 0137999999876532100 00 00011111111
Q ss_pred HHHhhhcc---CcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 132 QVIAVSKS---SDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
|....+.. .+.+.+... . .......+.+.+.++.+++ ..++++..||+||+||+++| ++
T Consensus 92 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14272 92 QKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILL 171 (252)
T ss_pred ccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11111110 111111000 0 0111112334455555543 34678899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||||++||+.....+.+.+ ....++|++||+... .+++ ..+++++...+.
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----------d~i~~l~~G~i~ 226 (252)
T PRK14272 172 MDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVS----------DTTSFFLVGDLV 226 (252)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 99999999999865555444 333589999999553 3333 346666655443
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=7.2e-23 Score=199.71 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+.+|.|.++|.++...+.. .......++.+|
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 85 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIR---DTERAGIVIIHQ 85 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHH---HHHhCCEEEEee
Confidence 578889999999999999999999999999998764 12589999999765321100 000111222222
Q ss_pred HHhhhc---cCcEEEEEecC------CCchhhHHHHHHHHHHccc--cc-cccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK---SSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RL-NKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~-~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.... .........+.++++.+++ .. ++++.+|||||+||+.+| +++
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred ccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 211111 11111111100 1111223467788999998 22 467899999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 192 TLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||||++||+.....+.+. +...+ ++|++|||.. +.++||+
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCE
Confidence 999999999986665544 43344 8999999944 4555554
No 255
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.86 E-value=1e-22 Score=199.45 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEE-EecCC-CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQ-LLDLP-GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~-~~d~~-g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|..+| .+|.|.++ |.+.. ..+.. .-........++
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 369 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHhhhEEE
Confidence 478899999999999999999999999999999987 88999995 43211 00000 000000011111
Q ss_pred HHHHHhhhcc---CcEEEEEec-CCCchhhHHHHHHHHHHcccc-------ccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSKS---SDIVLMVLD-ASKSEGHRQILTKELEAVGLR-------LNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~-~~~~~~~~~~~~~~L~~~~l~-------~~~~~~~LS~g~~qr~~ia---------l 189 (317)
..|....+.. .+.+.+... ..........+.++|+.+++. .++++.+|||||+||+.|| +
T Consensus 370 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lL 449 (520)
T TIGR03269 370 LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIV 449 (520)
T ss_pred EccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1121111110 111110000 011111234577889999982 4788999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc----c-cCcEEEecCCCC-hhhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK----I-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~-~~~~~~ 230 (317)
++||||++||+.....+++.+. . ..++|++|||.. +.+++|
T Consensus 450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCC
Confidence 9999999999998766665553 2 348999999955 334443
No 256
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=9.5e-22 Score=176.17 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|........+++... .. ..+
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~----~t-v~e 104 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGLSGQ----LT-GIE 104 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCCCCC----Cc-HHH
Confidence 578889999999999999999999999999999988 88999998853211122222211 00 111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
....... ............+..+++.+++ ..++++..||+||+||+++| +++||||++||+.
T Consensus 105 nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 105 NIEFKML-------CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 1110000 0011112222344566777777 67788999999999999988 9999999999998
Q ss_pred HHHHHHHH---hccc-CcEEEecCCCC-hhhHHH
Q 021103 202 LCYQILHE---YKIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~---l~~~-~~~i~~shd~~-~~~~~~ 230 (317)
....+++. +... .++|++||+.. +.++++
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d 211 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCT 211 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcC
Confidence 75555444 4333 49999999954 344444
No 257
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.7e-22 Score=171.85 Aligned_cols=160 Identities=20% Similarity=0.188 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+|||||||||++|+|..++ .+|.|.|+|.++.-..+. ...+.++.+++|
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p~~---~r~r~Gi~~VPe 85 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLPPH---ERARLGIAYVPE 85 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCCHH---HHHhCCeEeCcc
Confidence 467888889999999999999999999999999988 899999999988654321 112334444444
Q ss_pred HHhhhc---cCcEEEEEecCCCc-hhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKS-EGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~-~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
-...|+ ..+++......... ......+++..+.|=- +.+++.++|||||+|.++|+ +++|||+.
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 333333 34444433222211 1111125555666543 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~ 226 (317)
||-|..+.++.+.+ +.. + |++++.++...+
T Consensus 166 GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A 200 (237)
T COG0410 166 GLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA 200 (237)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH
Confidence 99999876665554 433 5 888888875544
No 258
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=1.4e-22 Score=205.61 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=121.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...+++.|
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 560 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----------WSGEILFDGIPREEIPREVL----ANSVAMVDQ 560 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEeHHHCCHHHH----HhheeEEec
Confidence 577889999999999999999999999999999988 89999999988754442211 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .....-..|||||+||+++|
T Consensus 561 ~~~lf~gTi~eNi~l~----~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLW----DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred CChhhhccHHHHhhCC----CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 3222221 2333221 111223345555555444 22334567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||.++...+++.+...+ |+|++||+...-.. ...++|+++.-+...+..++
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~----------~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD----------CDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEeCCEEEEecCHHH
Confidence 99999999999999888888876544 99999999755443 34577887765554433333
No 259
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.9e-22 Score=179.84 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.|.++|.++...+.. . .......++..|
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 98 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG------FRVEGKVTFHGKNLYAPDVD-P-VEVRRRIGMVFQ 98 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCC------CCCceEEEECCEEccccccC-h-HHHhhhEEEEcc
Confidence 578888889999999999999999999999998652100 02689999999876321100 0 000111122122
Q ss_pred HHhhhc--cCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+.+.+...... .....+.+.++++.+++ ..++.+.+||+||+||+.|| +++|||
T Consensus 99 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred CCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111110 0111111110000 11122344555666665 25678899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+ ....++|++||+.. +.++||
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999866555544 33359999999954 444443
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.7e-22 Score=196.95 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=106.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. .+.++.. +.. ....... .
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~~q~~~~--~~~~~~t-~ 401 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYYAQDHAY--DFENDLT-L 401 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEcccccc--cCCCCCc-H
Confidence 568899999999999999999999999999999888 8899999874 3433321 100 0000000 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.+.... ... .......+.++|+.+++ ..++++.+|||||+||+.+| +++||||++|
T Consensus 402 ~~~~~~---------~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 402 FDWMSQ---------WRQ---EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred HHHHHH---------hcc---CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 111110 000 11123457788999988 46889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
|+.....+.+.+.. .+++|++|||...
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99997777776654 3599999999653
No 261
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.6e-22 Score=177.91 Aligned_cols=170 Identities=17% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+. .+..|.|.++|.++...+. .. .......++.+|
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~-~~-~~~~~~i~~v~q 92 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG------ARLEGAVLLDNENIYSPNL-DV-VNLRKRVGMVFQ 92 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcccc------CCcccEEEECCEEcccccc-Ch-HHhhceEEEEec
Confidence 578888899999999999999999999999999876210 0136999999876531110 00 000111222222
Q ss_pred HHhhhc--cCcEEEEEec--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... ... .....+.+...++.+++ ..++.+..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 172 (251)
T PRK14249 93 QPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMD 172 (251)
T ss_pred CCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111111 1111111110 001 11122345556666665 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+ +..+....++|++||+.. +.+++|
T Consensus 173 EPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 173 EPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD 214 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCC
Confidence 99999999886544 444433349999999954 344443
No 262
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-22 Score=179.04 Aligned_cols=170 Identities=18% Similarity=0.124 Sum_probs=106.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. ..+.+|.|.++|.++...+ +... ......++.+|
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~-~~~~-~~~~~i~~~~q 92 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS------NVKIEGEVLLDGKNIYDKD-VDVV-ELRKRVGMVFQ 92 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccc------CCCCccEEEECCEeccccc-ccHH-HHHhheEEEec
Confidence 57788888999999999999999999999999875410 0015799999998763211 0000 00111111111
Q ss_pred HHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ........+.++++.+++ ..++++..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 172 (251)
T PRK14270 93 KPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 (251)
T ss_pred CCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 1111111111001 111223345677888876 25778999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++++
T Consensus 173 EP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcC
Confidence 999999999866554444 33358999999954 344443
No 263
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=8.7e-22 Score=184.35 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=109.4
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
++|-+..+.++++||||||||||||+.++|.+.| ..|.+.-.-+.. + + +..|..
T Consensus 409 l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~~H~~-~----~----------~y~Qh~ 462 (614)
T KOG0927|consen 409 LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRHSHNK-L----P----------RYNQHL 462 (614)
T ss_pred hhcccCcccceeEecCCCCchhhhHHHHhhcccc-----------cccccccccccc-c----h----------hhhhhh
Confidence 3455667899999999999999999999999988 788876543221 1 1 112222
Q ss_pred hhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 135 AVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 135 ~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
..... ...+.+++.........+.++.+|.+||+ ....+..+||+|||.|+.+| +++||||||||.
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 21111 12233444444333456778999999999 46678899999999999888 899999999999
Q ss_pred HHHHHHHHHhc-ccCcEEEecCCCC-hhhHHH
Q 021103 201 KLCYQILHEYK-IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~-~~~~~i~~shd~~-~~~~~~ 230 (317)
+.+..+-+.++ ..|++|++|||.. +..+.+
T Consensus 543 ~tid~laeaiNe~~Ggvv~vSHDfrlI~qVae 574 (614)
T KOG0927|consen 543 ETIDALAEAINEFPGGVVLVSHDFRLISQVAE 574 (614)
T ss_pred hhHHHHHHHHhccCCceeeeechhhHHHHHHH
Confidence 99888888887 4579999999954 334443
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=2.7e-22 Score=199.38 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=119.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|+|.. | .+|.|.++|.++.-++...+ +...+++.|
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-----------~~G~I~i~g~~i~~~~~~~l----r~~i~~v~Q 430 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-----------YQGSLKINGIELRELDPESW----RKHLSWVGQ 430 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-----------CCcEEEECCEecccCCHHHH----HhheEEecC
Confidence 5778999999999999999999999999999999 8 78999999988765443221 122333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ .....-..||||||||++||
T Consensus 431 ~~~LF~~TI~eNI~~g~----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 431 NPQLPHGTLRDNVLLGN----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred CCcCCCcCHHHHhhcCC----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3333322 33443321 11222344444444433 23344567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||.++...+.+.+. ...|+|++||+...... ...|+|+++.-+...+..++
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~----------aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----------WDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh----------CCEEEEEeCCeEeecCCHHH
Confidence 99999999999998777766654 34599999999754332 45577887665554443333
No 265
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.86 E-value=1.8e-22 Score=180.02 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=102.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT--HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~--~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|+++||+|+||||||||+++|+|. ..| .+|.+.++|.++...+..-. . .....+.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~-~--~~~~~~~ 89 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----------LEGDILFKGESILDLEPEER-A--HLGIFLA 89 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-----------CCceEEECCEEcccCChhhh-h--eeeEEEE
Confidence 577888899999999999999999999999997 345 78999999877643221000 0 0001111
Q ss_pred HHHHhhhcc---CcEEEEEe---------cCCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVL---------DASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~---------~~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.|....+.. .+.+.+.. ...........+.++|+.+++ ..++.+. .||+||+||+.+|
T Consensus 90 ~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 169 (252)
T CHL00131 90 FQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLD 169 (252)
T ss_pred eccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcC
Confidence 111000000 00000000 000011122456778888888 2466776 5999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---cc-cCcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~-~~~~i~~shd~~~~ 226 (317)
+++||||++||+.+...+.+.+ .. ..++|++||+....
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~ 214 (252)
T CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL 214 (252)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 9999999999999866655544 33 34899999996644
No 266
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=2.6e-22 Score=202.81 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...+++.|
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 534 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-----------ESGSVFYDGQDLAGLDVQAV----RRQLGVVLQ 534 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcCcCCHHHH----HhccEEEcc
Confidence 578899999999999999999999999999999988 89999999998866553222 122333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+ ...+.+.++++..++ . ....-..|||||+||+++|
T Consensus 535 ~~~lf~gTI~eNi~~~----~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 535 NGRLMSGSIFENIAGG----AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred CCccCcccHHHHHhcC----CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3322221 2333221 11 223455666666665 1 2223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||++||+++...+++.+... .|+|++||+...-+. ...|+|+++.-+...+.
T Consensus 610 LiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~----------~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN----------ADRIYVLDAGRVVQQGT 667 (686)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc----------CCEEEEEECCEEEEECC
Confidence 9999999999999988887777643 499999999654332 45678888776554433
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.5e-22 Score=177.26 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=98.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++...+...+ ....++..+
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~v~~~g~~~~~~~~~~~----~~~i~~~~q 82 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-----------SSGSILIDGQDIREVTLDSL----RRAIGVVPQ 82 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEhhhCCHHHH----HhhEEEECC
Confidence 577888889999999999999999999999999988 89999999976532211000 000111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+............ .+.+.+..+ ++ ..+.++..||+||+||++++ +++|
T Consensus 83 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD 162 (236)
T cd03253 83 DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD 162 (236)
T ss_pred CChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 10001 01111111110000000000 111222222 22 24556789999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+++.+ ....++|++||+.....
T Consensus 163 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 163 EATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 999999999866555544 34338999999966543
No 268
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-22 Score=180.81 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=112.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+.. |.+|.|.++|.++.-...+ .......++.+|
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 108 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFNYRDV---LEFRRRVGMLFQ 108 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccccchh---HHHhhheEEecc
Confidence 5788899999999999999999999999999998641100 2589999999765321100 000011111111
Q ss_pred HHhhh--ccCcEEEEEec---CCCchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLD---ASKSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+... ..........+.+.++.+++. +++.+..||+||+||+.|| +++|
T Consensus 109 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred CCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11101 00111111110 011111223455677888772 4677899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||......+++.+ ....++|++||+.. +.+++ ..+++++...+.
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~----------dri~~l~~G~i~ 241 (276)
T PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS----------DRAALFFDGRLV 241 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999866555544 33359999999965 34444 346667665443
No 269
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.5e-20 Score=177.52 Aligned_cols=170 Identities=31% Similarity=0.446 Sum_probs=125.8
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHH
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
.++..--..|||||.||||||||||+|++..+.+++|||||+.|..|.+.++ +..+.++|+||+......+.+...+++
T Consensus 152 ~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 152 RLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred EEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHH
Confidence 3344444589999999999999999999998779999999999999999987 788999999999876666666667777
Q ss_pred hhhccCcEEEEEecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHH
Q 021103 135 AVSKSSDIVLMVLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHE 209 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~ 209 (317)
..+..++++++++|..... .+...+.+.|..+.
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~------------------------------------------ 269 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN------------------------------------------ 269 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc------------------------------------------
Confidence 7788899999999985321 11111222221110
Q ss_pred hcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhcC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 210 YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 210 l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.....+|.++|+||+|+.... .++.+.+. ..++++||+++.|+++|.+.|.+.
T Consensus 270 ------------------------~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 270 ------------------------PRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred ------------------------hhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 001247999999999985432 23333322 468899999999999999999888
Q ss_pred hCeeE
Q 021103 287 MGLVR 291 (317)
Q Consensus 287 l~~~~ 291 (317)
+...+
T Consensus 326 l~~~~ 330 (424)
T PRK12297 326 LEETP 330 (424)
T ss_pred HHhCc
Confidence 75543
No 270
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-22 Score=178.24 Aligned_cols=170 Identities=18% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.+.++|.++.....+. ......++.+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~~~---~~~~~i~~~~ 89 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG------VKITGKLTMDGEDIYGNIDVA---DLRIKVGMVF 89 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccC------CCCceEEEECCEEcccccchH---HHHhheeEEe
Confidence 3678888999999999999999999999999999764100 025899999997653100000 0011111111
Q ss_pred HHHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+ ...+++.+..... ......+.+.+.++.+++ ..+.++..||+||+||+.|| +++
T Consensus 90 q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 90 QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111111 1111111111101 111122345566777765 34678899999999999998 899
Q ss_pred cCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCCh-hhHHH
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~-~~~~~ 230 (317)
||||++||+.....+ +..+....++|++||+... .+.+|
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISD 212 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence 999999999986554 4444334599999999553 44443
No 271
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=1.9e-22 Score=200.32 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=119.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-++...+ ....++..|
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~Q 424 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-----------DEGEILLDGHDLRDYTLASL----RNQVALVSQ 424 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCceEEECCEEhhhcCHHHH----HhhceEEcc
Confidence 578899999999999999999999999999999988 89999999988754432211 111222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ....+.+.+.+.++..++ .....-..|||||+||+++|
T Consensus 425 ~~~lf~~Ti~~Ni~~~~---~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 425 NVHLFNDTIANNIAYAR---TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred CceeecchHHHHHhcCC---CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 2222211 22222211 111233455566666554 12223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||+++...+.+.+.. ..|+|++||+....+.+ ..|+++++..+...+..+.
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~----------D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA----------DEILVVEDGEIVERGTHAE 564 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC----------CEEEEEECCEEEEeCCHHH
Confidence 999999999999987777666653 35999999997654433 4577787765554433333
No 272
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=3.6e-22 Score=178.23 Aligned_cols=165 Identities=21% Similarity=0.112 Sum_probs=106.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. .+++|.|.++|.++...+. .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~~------~~~~i~~v~q 86 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCAL------RGRKIATIMQ 86 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeecccccc------ccceEEEEec
Confidence 57889999999999999999999999999999976410 1257999999877531110 0011111111
Q ss_pred HHh-hhcc-C---cEEEEEecCCCchhhHHHHHHHHHHccc-c----ccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIA-VSKS-S---DIVLMVLDASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~-~~~~-~---d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~----~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
... .+.. . +.+.............+.+.++++.+++ . .++.+..||+||+||+.|| +++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 166 (254)
T PRK10418 87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE 166 (254)
T ss_pred CCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 100 0000 0 0000000000111223567788999998 2 4788999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHH
Q 021103 194 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
||++||+.....+ ++.+.. ..++|++||+... .+++|
T Consensus 167 Pt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 167 PTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCC
Confidence 9999999886555 444433 2389999999553 34443
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=2.1e-22 Score=167.88 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||+|||||+++|+|...| .+|.+.++|.++...+. ..
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~--------------~~ 71 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVSFASP--------------RD 71 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCcCCH--------------HH
Confidence 577888999999999999999999999999999988 89999998875422100 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. .+. .+.++ .+||+||+||+++| +++||||++||+...
T Consensus 72 ~---~~~--~i~~~----------------------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~ 118 (163)
T cd03216 72 A---RRA--GIAMV----------------------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEV 118 (163)
T ss_pred H---Hhc--CeEEE----------------------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 0 000 01111 12999999999988 899999999999986
Q ss_pred HHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 204 YQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 204 ~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
..+.+.+ .. ..++|++||+.. +.+.++
T Consensus 119 ~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 119 ERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 6555544 33 348999999955 455444
No 274
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=4.5e-22 Score=198.94 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+.+|+++||+|+|||||||||++|+|...| ++|.|.++|.. +..+...... .....+.
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~~~----~~~~~v~ 84 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDPPR----NVEGTVY 84 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCCCC----CCCCCHH
Confidence 578899999999999999999999999999999888 88999987632 2222211000 0011111
Q ss_pred HHH-----------hhhcc----------CcEEEEE------ecCCCchhhHHHHHHHHHHccccccccCCcccccceee
Q 021103 132 QVI-----------AVSKS----------SDIVLMV------LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKT 184 (317)
Q Consensus 132 ~~~-----------~~~~~----------~d~i~~v------~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr 184 (317)
+.. ..+.. .+++... ...........++.++|+.+|+..++++..|||||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqR 164 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRK 164 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHH
Confidence 110 00000 0000000 00000111234678889999996688999999999999
Q ss_pred eeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 185 GGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 185 ~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+.|| +++||||++||+.....+.+.+.. .+++|++|||.. ++.+|+.
T Consensus 165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCe
Confidence 9998 999999999999998777666653 359999999955 4455554
No 275
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.2e-22 Score=177.68 Aligned_cols=181 Identities=18% Similarity=0.097 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+..+ .+.+|.|.++|.++...+.+ . .......++.+|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~q 94 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG------CRITGDILYNGENIMDSGAD-V-VALRRKIGMVFQ 94 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCC------CCcceEEEECCEEccccccc-h-hhhhceEEEEec
Confidence 578899999999999999999999999999998643100 01379999999876432110 0 000111222222
Q ss_pred HHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.... .........+.++++.+++ ..++.+..||+||+||+.++ +++|
T Consensus 95 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 95 RPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred CCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111110 01111111110 0111223345667777765 35788999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ....++|++||+.. +.+.+| .++++++..+.
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d----------~v~~l~~G~i~ 227 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSD----------YTGFMYLGKLI 227 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCC----------EEEEEECCEEE
Confidence 999999999866554444 33359999999954 334443 45666655443
No 276
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-22 Score=180.07 Aligned_cols=180 Identities=17% Similarity=0.094 Sum_probs=109.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+... .......++.+|
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~~~--~~~~~~i~~v~q 112 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP------SVKTTGKILYRDQNIFDKSYSV--EELRTNVGMVFQ 112 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCC------CCCCceeEEECCEEcccccccH--HHHhhhEEEEec
Confidence 57888999999999999999999999999999975100 0127899999997753211000 000011111111
Q ss_pred HHhhh--ccCcEEEEEe---cCCCchhhHHHHHHHHHHcc----c--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVL---DASKSEGHRQILTKELEAVG----L--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~---~~~~~~~~~~~~~~~L~~~~----l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+.. ...........+.+.++.++ + ..++++..||+||+||+.++ +++|
T Consensus 113 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD 192 (271)
T PRK14238 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD 192 (271)
T ss_pred CCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11000 0011111110 00111111233455566653 3 45778999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+... .+++| .+++++..-+
T Consensus 193 EPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d----------~i~~l~~G~i 244 (271)
T PRK14238 193 EPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISD----------KTAFFLNGYV 244 (271)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCC----------EEEEEECCEE
Confidence 999999999866655544 333589999999653 44443 3556665544
No 277
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=9.5e-22 Score=174.85 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+..... ....++.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~~---~~~i~~~ 83 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLELSPEDRA---GEGIFMA 83 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-----------CceEEEECCCccccCCHHHHh---hcceEEE
Confidence 5778888899999999999999999999999995 46 789999998765322110000 0001111
Q ss_pred HHHHhhhcc----------CcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS----------SDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~----------~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.+....+.. .+.+..... ..........+.+.++.+++ ..++.+. .||+||+||+.+|
T Consensus 84 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (248)
T PRK09580 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163 (248)
T ss_pred ecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 110000000 000000000 00111123456677788777 2445554 7999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+ .+... .++|++|||....
T Consensus 164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999998666655 44433 4999999996543
No 278
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.86 E-value=3.4e-22 Score=195.88 Aligned_cols=168 Identities=20% Similarity=0.191 Sum_probs=106.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCe---------------------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDT--------------------- 109 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~--------------------- 109 (317)
.++++.+..|++++|+|+||||||||+++|+|.. .| .+|.|.+++.
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEeccccccccccccccccccccccc
Confidence 5788999999999999999999999999999996 46 7899988631
Q ss_pred --eEEE--ecCCCccc----cccCCchhHHHH-Hhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--ccccc
Q 021103 110 --KIQL--LDLPGIIE----GASEGKGRGRQV-IAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKR 173 (317)
Q Consensus 110 --~i~~--~d~~g~~~----~~~~~~~~~~~~-~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~ 173 (317)
++.. .+...... ..+...++.+|. ...+. ..+.+.+... .........++.++|+.+++ ..+++
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 165 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI 165 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 1100 00000000 000111111111 00111 0111111110 01111223467788999999 56788
Q ss_pred CCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHHH
Q 021103 174 PPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLIDV 231 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~~ 231 (317)
+.+|||||+||+.|| +++||||++||+.....+ +..+.. ..++|++|||... .++||+
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 999999999999998 999999999999986665 444432 2489999999654 455554
No 279
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.6e-22 Score=178.73 Aligned_cols=170 Identities=19% Similarity=0.137 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+. |. .+.+|+|.++|.++...+.+ . ...+...++..|
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~q 91 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLI---PS---VKIEGEVLLDGQDIYKSDID-V-NQLRKRVGMVFQ 91 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc-h-HHHhccEEEEec
Confidence 5788899999999999999999999999999986420 00 01579999999875321000 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEe--cC-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVL--DA-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~--~~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.. .. .......+.+.+.++.+++ ..++++..||+||+||+++| +++|
T Consensus 92 ~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 92 QPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11100 0111111111 00 0111223456667777765 24778899999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++++
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISD 213 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCC
Confidence 999999999866554444 33349999999965 344443
No 280
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.9e-22 Score=178.70 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++.+.. +..|.+.++|.++.....+ . .......++.++
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i------~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~~~q 95 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV------RVEGRVEFFNQNIYERRVN-L-NRLRRQVSMVHP 95 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCc------cccceEEECCEEhhccccc-h-HHhhccEEEEec
Confidence 5788999999999999999999999999999998762111 1368898988765311000 0 000011111111
Q ss_pred HHhhhc--cCcEEEEEe--cCCCch-hhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVL--DASKSE-GHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~~~~-~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+.+.+.. ...... .....+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 96 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD 175 (261)
T PRK14258 96 KPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175 (261)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 100000 011111100 000111 123456677888876 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 176 EP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcC
Confidence 9999999998665555443 2 349999999954 344443
No 281
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=3.3e-22 Score=197.14 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCC--CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLP--GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~--g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++... .+.. .. .
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----~~-t 402 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGETVKLAYVDQSRDALDP----NK-T 402 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCceEEEEEeCCccccCC----CC-c
Confidence 568899999999999999999999999999999888 8899998542 23333211 0110 00 0
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
+.+.+. +...............++|+.+++ ..++++..|||||+||+.+| +++||||++
T Consensus 403 v~e~l~---------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 403 VWEEIS---------GGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHH---------hhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 111111 000000000111235578899998 25788999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEecCCCCh-hhHHH
Q 021103 198 VDEKLCYQILHEYKI-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~~-~~~~i~~shd~~~-~~~~~ 230 (317)
||+.....+.+.+.. .+++|++|||... ..+++
T Consensus 474 LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d 508 (552)
T TIGR03719 474 LDVETLRALEEALLEFAGCAVVISHDRWFLDRIAT 508 (552)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCC
Confidence 999998777776654 3589999999553 34443
No 282
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=5.2e-22 Score=195.82 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCC--CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLP--GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~--g~~~~~~~~~~~ 129 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++... .+.. .. .
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----~~-t 404 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGETVKLAYVDQSRDALDP----NK-T 404 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEeCchhhcCC----CC-C
Confidence 578899999999999999999999999999999988 8899998542 23333211 0100 00 0
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
+.+.+.. ................+|+.+++ ..++++.+|||||+||+.+| +++||||++
T Consensus 405 v~e~l~~---------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 405 VWEEISG---------GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHHh---------hcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 1111110 00000000112234568999998 25889999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+.. .+++|++|||.. +..+||
T Consensus 476 LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d 510 (556)
T PRK11819 476 LDVETLRALEEALLEFPGCAVVISHDRWFLDRIAT 510 (556)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCC
Confidence 999997777776654 358999999954 444444
No 283
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=1.9e-21 Score=191.96 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=100.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-Cc-hhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GK-GRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~-~~~~ 131 (317)
++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++ ..+.++. +... .. ..+.
T Consensus 357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~i~y~~------Q~~~~~~~~tv~ 418 (590)
T PRK13409 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LKISYKP------QYIKPDYDGTVE 418 (590)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-eeEEEec------ccccCCCCCcHH
Confidence 45566788999999999999999999999999988 88999875 3333221 1110 00 0011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+.+.. ...... ....+.++|+.+++ ..++++.+|||||+||++|| +++||||++||+
T Consensus 419 e~l~~---------~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~ 486 (590)
T PRK13409 419 DLLRS---------ITDDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486 (590)
T ss_pred HHHHH---------HhhhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11110 000111 12245778999999 67899999999999999998 999999999999
Q ss_pred HHHHHHHHHhc---c--cCcEEEecCCCChh
Q 021103 201 KLCYQILHEYK---I--HNAEVLFREDATVD 226 (317)
Q Consensus 201 ~~~~~~l~~l~---~--~~~~i~~shd~~~~ 226 (317)
.....+.+.+. . ..++|++|||....
T Consensus 487 ~~~~~l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 487 EQRLAVAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 98665555443 3 34999999996543
No 284
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.85 E-value=8.9e-22 Score=212.43 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.+.++|.++.. +. ...+...++..|
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-----------tsG~I~i~G~dI~~-~~----~~~r~~IG~~pQ 1010 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-----------TSGTVLVGGKDIET-NL----DAVRQSLGMCPQ 1010 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-----------CceEEEECCEECcc-hH----HHHhhcEEEEec
Confidence 578889999999999999999999999999999988 89999999987631 10 001111222222
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+... ........+.+.++|+.+++ ..++++.+||||||||+.+| +++||||+
T Consensus 1011 ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTS 1090 (2272)
T TIGR01257 1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090 (2272)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 111111 1111111111 11112234567889999999 67889999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcccCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQI---LHEYKIHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+...+.+ ++.++.+.++|++||+.+.. .++| .++++++.-+..
T Consensus 1091 GLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laD----------rI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGD----------RIAIISQGRLYC 1140 (2272)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC----------EEEEEECCEEEE
Confidence 9999986555 44444434999999996544 3443 456666655543
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.85 E-value=1.6e-21 Score=162.96 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.+++. .+.++.
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~i~~~~---------------- 70 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-----------GSGRIGMPEGEDLLFLP---------------- 70 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCCceEEEEC----------------
Confidence 578889999999999999999999999999999888 8899998763 222221
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
|. .. + ... .+.+.+... .+..||+||+||+++| +++||||++||+..
T Consensus 71 q~------~~--~---~~~-------tv~~nl~~~------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 71 QR------PY--L---PLG-------TLREQLIYP------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126 (166)
T ss_pred CC------Cc--c---ccc-------cHHHHhhcc------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence 10 00 0 000 011111100 4678999999999998 99999999999998
Q ss_pred HHHHHHHhccc-CcEEEecCCCChhhHH
Q 021103 203 CYQILHEYKIH-NAEVLFREDATVDDLI 229 (317)
Q Consensus 203 ~~~~l~~l~~~-~~~i~~shd~~~~~~~ 229 (317)
...+.+.+... .++|++||+.+....+
T Consensus 127 ~~~l~~~l~~~~~tiiivsh~~~~~~~~ 154 (166)
T cd03223 127 EDRLYQLLKELGITVISVGHRPSLWKFH 154 (166)
T ss_pred HHHHHHHHHHhCCEEEEEeCChhHHhhC
Confidence 77776666543 4899999997654433
No 286
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-21 Score=183.79 Aligned_cols=174 Identities=21% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++|||+|++|||||||++.|+|...| .+|+|.++|.++..++...+++ ......|
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-----------~~G~i~~~g~~~~~l~~~~~~e----~i~vl~Q 419 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----------QQGSITLNGVEIASLDEQALRE----TISVLTQ 419 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-----------CCCeeeECCcChhhCChhhHHH----HHhhhcc
Confidence 688899999999999999999999999999999988 9999999998876655321211 1111112
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
-...+.. .|++.+ .++....+.+.+.|+.+|+ .++.--..|||||+||+++|
T Consensus 420 r~hlF~~Tlr~NL~l----A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 420 RVHLFSGTLRDNLRL----ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred chHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 1111111 122211 1222333456667777766 22334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||.|||+.+-+++++.+- ...|++++||+....+. .+.|+|++-.-++....
T Consensus 496 ~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~----------~drIivl~~Gkiie~G~ 555 (573)
T COG4987 496 WLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER----------MDRIIVLDNGKIIEEGT 555 (573)
T ss_pred EEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh----------cCEEEEEECCeeeecCC
Confidence 89999999999999888888774 34599999999665554 35577777665554433
No 287
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.8e-22 Score=178.62 Aligned_cols=180 Identities=16% Similarity=0.077 Sum_probs=111.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... -|.+|.|.++|.++...+.+ . .......++..|
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~i~i~g~~i~~~~~~-~-~~~~~~i~~v~q 113 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDN------CRIEGEIRLDGQNIYDKKVD-V-AELRRRVGMVFQ 113 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccC------CCCceEEEECCEECcccccC-H-HHHhccEEEEec
Confidence 578889999999999999999999999999999752000 02689999999875321100 0 000111111111
Q ss_pred HHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... .. ........+.++++.+++ ..++.+..||+||+||+++| +++|
T Consensus 114 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 114 RPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 111111 0111111110 00 111123346667777776 25678899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+... .+.+| .+++++...+
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d----------~i~~l~~G~i 245 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD----------YTAFMYMGKL 245 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCC----------EEEEEECCEE
Confidence 999999999865554444 343589999999653 44443 3566665544
No 288
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=6.1e-22 Score=196.09 Aligned_cols=176 Identities=22% Similarity=0.233 Sum_probs=121.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 421 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-----------QQGEILLNGQPIADYSEAAL----RQAISVVSQ 421 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhheeEEcc
Confidence 577899999999999999999999999999999988 89999999988765442211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--ccc----------ccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLN----------KRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~----------~~~~~LS~g~~qr~~ia---------l 189 (317)
....+.. .+++.+.. +....+.+.+.++.+++ ... .....|||||+||+++| +
T Consensus 422 ~~~lf~~ti~~Ni~~~~----~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 422 RVHLFSATLRDNLLLAA----PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred cchhhcccHHHHhhcCC----CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2222221 22222211 12234456777777777 222 24567999999999999 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
++||||++||+++...+.+.+. ...++|++||+...... ...++++++..+...+..+
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~----------~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ----------FDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh----------CCEEEEEeCCeEEEeCCHH
Confidence 9999999999998776666654 34599999999654332 3457788776655443333
No 289
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.3e-22 Score=170.03 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=87.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.. . ..
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~-----------~~ 73 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----------DSGSILIDGEDLTDLEDE-L-----------PP 73 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccchh-H-----------HH
Confidence 567888899999999999999999999999999887 899999998765321100 0 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. . ..+.++....... ....+.+.+.. .||+||+||+.++ +++||||++||+...
T Consensus 74 ~----~--~~i~~~~q~~~~~-~~~t~~~~l~~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 74 L----R--RRIGMVFQDFALF-PHLTVLENIAL----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred H----h--hcEEEEecCCccC-CCCCHHHheee----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 0 0 0111111100000 00001111100 1999999999988 999999999999986
Q ss_pred HHHHH---Hhccc--CcEEEecCCCC
Q 021103 204 YQILH---EYKIH--NAEVLFREDAT 224 (317)
Q Consensus 204 ~~~l~---~l~~~--~~~i~~shd~~ 224 (317)
..+.+ .+... .+++++||+..
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 55544 44443 48999999954
No 290
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.8e-22 Score=175.23 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=101.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 84 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-----------SSGSILIDGVDISKIGLHD----LRSRISIIP 84 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhHhCCHHH----HhhhEEEEC
Confidence 3678899999999999999999999999999999888 8899999987653211000 001111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+. ..+++.+... . ....+.+.++.+++ ..+..+..||+||+||++++
T Consensus 85 q~~~l~~~tv~enl~~~~~-~----~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 85 QDPVLFSGTIRSNLDPFGE-Y----SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCCccccchHHHHhCcCCC-C----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 1111110 0111111100 0 12234444555554 12467899999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+. ...++|++||+....
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 89999999999998666555554 334899999996543
No 291
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.5e-22 Score=195.34 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|. .+.++.. +.+..... .....
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~~~q~~~~~~~~t-v~e~l 85 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGKLRQDQFAFEEFT-VLDTV 85 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCcCCCCc-HHHHH
Confidence 678899999999999999999999999999999887 7899998763 3433221 11111000 00000
Q ss_pred H----HHHh------h-hccCcEEEEE----------ecCCCchhhHHHHHHHHHHcccc--c-cccCCcccccceeeee
Q 021103 131 R----QVIA------V-SKSSDIVLMV----------LDASKSEGHRQILTKELEAVGLR--L-NKRPPQIYFKKKKTGG 186 (317)
Q Consensus 131 ~----~~~~------~-~~~~d~i~~v----------~~~~~~~~~~~~~~~~L~~~~l~--~-~~~~~~LS~g~~qr~~ 186 (317)
. .... . ....+..... ...........++.++|+.+++. . ++++.+|||||+||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~ 165 (530)
T PRK15064 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVL 165 (530)
T ss_pred HHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHH
Confidence 0 0000 0 0000000000 00000011234577889999982 3 4678999999999999
Q ss_pred eE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 187 IS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 187 ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+| +++||||++||+.....+.+.+... .++|++|||.. +.++||+
T Consensus 166 lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 166 LAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcce
Confidence 98 9999999999999988888877654 49999999955 4555554
No 292
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-22 Score=177.78 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+.. ..+.+|.|.++|.++...+. .. .......++..|
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~i~g~~~~~~~~-~~-~~~~~~i~~~~q 91 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP------GFRVEGKIYFKGQDIYDPQL-DV-TEYRKKVGMVFQ 91 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCC------CCCcceEEEECCEEcccchh-hH-HHhhhhEEEEec
Confidence 57888889999999999999999999999999875310 00167999999976532110 00 000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD 171 (250)
T PRK14262 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 11000 111111111110 0111122345667777776 25778899999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.+...+.+.+ ....++|++||+.+ +.+++|
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred CCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCC
Confidence 999999999865554444 33359999999965 444444
No 293
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.6e-22 Score=178.06 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. | ...+|.|.++|.++...+.. ........++..|
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~----~~~~G~i~~~g~~i~~~~~~--~~~~~~~i~~v~q 95 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG--P----VKVEGVVDFFGQNIYDPRIN--INRLRRQIGMVFQ 95 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCccc--C----CccceEEEECCEeccccccc--hHhhhhheEEEec
Confidence 57889999999999999999999999999999876410 0 00379999999765321100 0000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.+.++.+++ ..++++..||+||+||+.+| +++|
T Consensus 96 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 175 (259)
T PRK14260 96 RPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175 (259)
T ss_pred ccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11100 001111110000 0111223456677777775 35678899999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.+ +.+++|
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 176 EPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999998865555544 33359999999954 344444
No 294
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=2.3e-20 Score=167.99 Aligned_cols=155 Identities=26% Similarity=0.255 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d 141 (317)
+|+|+|+||||||||+|+|+|... .++++|+||++...|....++.++.++||||+....... ..+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 799999999999999999999875 489999999999999888778889999999986542211 111223445667899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+.........+...+.
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l~--------------------------------------------------------- 104 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKLQ--------------------------------------------------------- 104 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHHH---------------------------------------------------------
Confidence 99999998653221111111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HH---hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KL---ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l---~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
....|+++|+||+|+...+... .+ ..+..++++||.+|.|+++|.+.|.+.++.
T Consensus 105 --------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 105 --------------NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred --------------hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 0147999999999998544322 12 123468999999999999999999998753
No 295
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=4.1e-22 Score=198.20 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=119.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...++..|
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----~~~i~~v~Q 422 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-----------TEGEIRLDGRPLSSLSHSVL----RQGVAMVQQ 422 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEhhhCCHHHH----HhheEEEcc
Confidence 578899999999999999999999999999999988 89999999988765442221 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ....+.+.++++.+++ .....-..|||||+||+++|
T Consensus 423 ~~~lF~~Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 423 DPVVLADTFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred CCccccchHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2222221 22222211 1123345666666665 12233467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||+++...+.+.+. ...++|++||+...-.. ...++++++..+...+..++
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~----------~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE----------ADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEEEEcCHHH
Confidence 99999999999998777666654 34599999999755443 34577887776654443333
No 296
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.1e-22 Score=182.63 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...+..+ .|.+|.|.++|.++...+ .+.. ..+...++.+|
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~------~p~~G~I~idG~~i~~~~-~~~~-~lr~~i~~v~q 170 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG------TSHEGEIYFLGTNTRSKK-ISSL-ELRTRIGMVFQ 170 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccc-cchH-hhhccEEEEec
Confidence 678899999999999999999999999999999753100 026899999998763211 0000 01111222222
Q ss_pred HHhhhc--cCcEEEEEe--cCCCchh-hHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVL--DASKSEG-HRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~~~~~-~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.. +...... ....+...++.+++ ..+.+...|||||+||++|| +++|
T Consensus 171 ~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 171 KPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred CCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 211111 112222111 1111111 11234566777765 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
|||++||+.....+ +..+....|+|++||+... .+++ ..++|++..-+......+.+
T Consensus 251 EPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~----------Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 251 EPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS----------DETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEEeCCHHHH
Confidence 99999999885544 4444444599999999553 3434 45777877665544444443
No 297
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.4e-22 Score=169.15 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=87.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+.++|+|+||||||||+++|+|..+| .+|.+.++|.++.... ......
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~------ 74 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDIKKEP-----EEVKRR------ 74 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccch-----Hhhhcc------
Confidence 578888999999999999999999999999999887 8999999997653110 000001
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
+.++....... ....+.+.+. ||+||+||+.+| +++||||++||+...
T Consensus 75 ----------i~~~~q~~~~~-~~~tv~~~~~------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 75 ----------IGYLPEEPSLY-ENLTVRENLK------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred ----------EEEEecCCccc-cCCcHHHHhh------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 11111100000 0001111110 999999999988 999999999999986
Q ss_pred HHHHHHhc---cc-CcEEEecCCCCh
Q 021103 204 YQILHEYK---IH-NAEVLFREDATV 225 (317)
Q Consensus 204 ~~~l~~l~---~~-~~~i~~shd~~~ 225 (317)
..+++.+. .. .++|++||+...
T Consensus 132 ~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 132 REFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 65555443 33 489999999653
No 298
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.6e-22 Score=176.05 Aligned_cols=168 Identities=20% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccc-cccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIE-GASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~-~~~~~~~~ 129 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.-... .+...+.. ......++
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~ 94 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEEECCcccccCCHHHHhcceEE
Confidence 3678889999999999999999999999999999887 66666555432100 01000000 00111111
Q ss_pred HHHHHhhhcc---CcEEEEEec--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKS---SDIVLMVLD--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
..+....+.. .+++.+... ... .......+.++++.+++ ..+..+..||+||+||+.++
T Consensus 95 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 95 VFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred EccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1111111111 111111111 011 11223456778888887 24678899999999999998
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCChh-hHHH
Q 021103 189 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD-DLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~-~~~~ 230 (317)
+++||||++||......+ +..+....++|++||+.... ++|+
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d 220 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVAD 220 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCC
Confidence 999999999999985544 44444445999999995533 4444
No 299
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.85 E-value=3e-22 Score=180.26 Aligned_cols=175 Identities=19% Similarity=0.115 Sum_probs=114.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||+|||||+++|+|... .+|.|.++|.++..++...+ +...++.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------------~~G~I~i~g~~i~~~~~~~l----r~~i~~v~ 83 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGDIQIDGVSWNSVPLQKW----RKAFGVIP 83 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEhhhCCHHHH----hhhEEEEC
Confidence 368889999999999999999999999999999974 46999999987643211100 11111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc-----------ccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~-----------LS~g~~qr~~ia-------- 188 (317)
|....+. ..+++.. ... ...+.+.+.++.+++ ..++.+.. ||+||+||+++|
T Consensus 84 q~~~lf~~tv~~nl~~----~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 84 QKVFIFSGTFRKNLDP----YGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred CCcccchhhHHHHhhh----ccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1111111 0111110 001 122456777888888 45555655 999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+. ...++|++||+......+ ..++|+++..+......+
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~----------dri~vl~~G~i~~~g~~~ 221 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLEC----------QRFLVIEENKVRQYDSIQ 221 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhC----------CEEEEecCCeEeecCCHH
Confidence 89999999999998665555444 334999999996543323 356777776655433333
No 300
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=4e-22 Score=177.32 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|.. + .+|.|.++|.++.-.+...+ ....++.+|
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 76 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAEL----ARHRAYLSQ 76 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHHH----hhheEEecc
Confidence 5788888999999999999999999999999987 4 47999999976532111000 000111111
Q ss_pred HHhhh---ccCcEEEEEec-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------ee
Q 021103 133 VIAVS---KSSDIVLMVLD-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FN 190 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------li 190 (317)
....+ ...+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| ++
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred cCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 10000 00111111110 11112224467788999998 56888999999999999743 67
Q ss_pred ecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
+||||++||+.....+.+.+ ... .++|++||+.. +.+++|
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 89999999999865554444 333 49999999965 555544
No 301
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.6e-22 Score=176.33 Aligned_cols=163 Identities=16% Similarity=0.119 Sum_probs=101.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .+.+|.|.++|.++...+. .. .......++.
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~ 91 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG--------VTITGNVSLRGQNIYAPNE-DV-VQLRKQVGMV 91 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC--------CCcccEEEEcCEEcccccc-cH-HHhcCeEEEE
Confidence 57788888999999999999999999999999864 20 0147999999976531110 00 0000111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .........+.+.++.+++ ..++.+.+||+||+||+.+| ++
T Consensus 92 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 92 FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111100 00111111110 0 1111112345556666654 35678899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
+||||++||+.....+.+.+ ....++|++||+...
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 99999999999866655544 333599999999653
No 302
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=5.8e-22 Score=163.94 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
-.++||.+.+|+.-+|||||||||||++-.|+|..+| ..|.++++| .++...+...+ .+.++++-
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-----------~~G~v~f~g~~dl~~~~e~~I---Ar~GIGRK 86 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-----------QEGEVLFDGDTDLTKLPEHRI---ARAGIGRK 86 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-----------CcceEEEcCchhhccCCHHHH---HHhccCcc
Confidence 3688999999999999999999999999999999988 899999988 55554433211 23344444
Q ss_pred HHHHhhhcc---CcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 131 RQVIAVSKS---SDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
+|....+.. .+++.+.+. .........++.+.|+..++ ..+.....||-||||++.|.
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 444433332 122211111 11223455689999999999 77888999999999999876
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 189 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 189 --lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
+++|||++|+..+. ..++++.+....+++++.||..+-+.+ ...+-|++......++.++.+...+
T Consensus 167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~---------A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 167 KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREI---------ADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHh---------hheeEEEeccceeecccHHHhhcCc
Confidence 88999999997655 456777777777999999997655432 3456788888888777777777766
Q ss_pred CeEE
Q 021103 264 NSVV 267 (317)
Q Consensus 264 ~~v~ 267 (317)
.++.
T Consensus 238 ~ViE 241 (249)
T COG4674 238 KVIE 241 (249)
T ss_pred ceEe
Confidence 6544
No 303
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=4e-22 Score=167.75 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||+|||||+++|+|...| .+|.|.++|.++...+. .
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~--------------~ 72 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-----------TSGRVRLDGADISQWDP--------------N 72 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEEcccCCH--------------H
Confidence 3578889999999999999999999999999999988 89999999876532110 0
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
.. . ..+.++....... . ..+.+.+ ||+||+||+++| +++||||++||+..
T Consensus 73 ~~----~--~~i~~~~q~~~~~-~-~tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 73 EL----G--DHVGYLPQDDELF-S-GSIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred HH----H--hheEEECCCCccc-c-CcHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 00 0 0011111100000 0 0111111 999999999988 99999999999998
Q ss_pred HHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 203 CYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 203 ~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
...+++.+ ...+ ++|++||+....+
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 66555544 3334 8999999965433
No 304
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=4.8e-22 Score=172.81 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=97.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-ECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.++.|++++|+||||||||||+++|+|...| .+|.+. +++..+..-..+.+.+. . .+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~sG~i~~~~~~~~~~~~~~~l~~~----l-tv~ 67 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-----------DEGDFIGLRGDALPLGANSFILPG----L-TGE 67 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCCCEEEecCceeccccccccCCc----C-cHH
Confidence 467888999999999999999999999999999888 789886 66654321111111110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+..... ....... ..+.....+..+++ ..++++..||+||+||+++| +++|||++++|+
T Consensus 68 enl~~~---------~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 68 ENARMM---------ASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHH---------HHHcCCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 111111 0000000 11111222334455 56788999999999999888 899999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
.....+.+.+. ...++|++||+... ..++|
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d 171 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCH 171 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcC
Confidence 88666655442 23489999999654 34444
No 305
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.4e-22 Score=176.19 Aligned_cols=170 Identities=14% Similarity=0.057 Sum_probs=107.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|..++ +.+|.|.++|.++...+..- .......++.+|
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~q 96 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGF------RFEGHVHFLGQDVYGKGVDP--VVVRRYIGMVFQ 96 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCC------CCceEEEECCEeccccccch--HhhhhceEEEec
Confidence 5788999999999999999999999999999998652111 15799999998763211100 000111111111
Q ss_pred HHhh--hccCcEEEEEecCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAV--SKSSDIVLMVLDAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~--~~~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.... ....+++.+..... ........+.++++.+++ ..++++..||+||+||+.+| +++|||
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 01111111111000 011123456778888887 23467789999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+. ...++|++||+.. +.+++|
T Consensus 177 tsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 177 CSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 99999998666555443 3348999999965 445444
No 306
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=8.3e-22 Score=170.58 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. .......++.+
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~----~~~~~~i~~v~ 88 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-----------EEGKIEIDGIDISTIPL----EDLRSSLTIIP 88 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEhHHCCH----HHHHhhEEEEe
Confidence 3578899999999999999999999999999999888 89999999976531110 00001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
|....+ ...+++.+. +.. ....+.+.++ .+.++..||+||+||+++| +++||||++||+
T Consensus 89 q~~~~~~~tv~~~l~~~-~~~----~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 89 QDPTLFSGTIRSNLDPF-DEY----SDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred cCCcccCccHHHHhccc-CCC----CHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 111111 001111111 100 1122333343 4678899999999999998 899999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCChh
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATVD 226 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~~ 226 (317)
.....+.+.+. ...++|++||+....
T Consensus 159 ~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 159 ATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 98665555443 334899999996644
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=7.5e-22 Score=194.66 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEec-CCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLD-LPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d-~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.|.+++ ..+.++. .+.+.+.. . +
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~~~~~~~--t---v 87 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKVGYLPQEPQLDPEK--T---V 87 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCCCCCC--c---H
Confidence 588899999999999999999999999999999887 789998864 3344432 12111100 0 0
Q ss_pred HHHHhh-----------hcc-----CcEEEEE-------------ecCCCchhhHHHHHHHHHHccc-cccccCCccccc
Q 021103 131 RQVIAV-----------SKS-----SDIVLMV-------------LDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK 180 (317)
Q Consensus 131 ~~~~~~-----------~~~-----~d~i~~v-------------~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g 180 (317)
.+.+.. +.. ...-... .+.........++.++|+.+++ ..++++.+||||
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 011000 000 0000000 0000000113457778889988 668889999999
Q ss_pred ceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHH
Q 021103 181 KKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 181 ~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+||+.|| +++||||++||+.....+.+.+.. .+++|++|||.+ +..++|
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 99999998 999999999999997777666653 359999999965 444444
No 308
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=174.45 Aligned_cols=164 Identities=17% Similarity=0.075 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+.. ..+.+|.|.++|.++...+. .. .......++.+|
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~i~~~~~-~~-~~~~~~i~~~~q 91 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP------GFRHEGHIYLDGVDIYDPAV-DV-VELRKKVGMVFQ 91 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCC------CCCCccEEEECCEEcccccc-cH-HHHhhheEEEec
Confidence 57888888999999999999999999999999853100 00168999999987532110 00 000111111111
Q ss_pred HHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ........+.+.++.+++ ..++++..||+||+||++++ +++|
T Consensus 92 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 92 KPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred CCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11111 1112221111111 111223456677888776 24778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT 224 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~ 224 (317)
|||++||+.+...+.+.+ ....++|++||+..
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 206 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 999999998865554444 34348999999954
No 309
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=8e-22 Score=199.62 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=118.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 562 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-----------TGGQVLLDGVPLVQYDHHYL----HRQVALVGQ 562 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HhhceEEec
Confidence 578899999999999999999999999999999988 89999999988754432211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+... ....+.+.+.++..++ .....-.+||||||||+++|
T Consensus 563 ~~~lF~gTIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 563 EPVLFSGSVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred CccccccCHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 233322211 1123345555555544 22334467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.+....+.+.... ..|+|++||+...... ...|+|+++.-+...+..+++
T Consensus 639 LILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~----------aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER----------ADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred EEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh----------CCEEEEEECCEEEEeeCHHHH
Confidence 999999999999887766663222 3499999999654332 355778877665544443443
No 310
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.3e-22 Score=178.52 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=104.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.|.++|.++...+... .......++.+|
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~l~~~~~~~--~~~~~~i~~v~q 108 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG------AKVEGRLLYRDRNIYDSQINS--VKLRRQVGMVFQ 108 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC------CCcCceEEECCEecccccchh--HHHhhcEEEEcc
Confidence 578889999999999999999999999999999753000 014799999997653211000 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+.+.+...... .....+.+.+.++.+++ ..++++..||+||+||+++| +++|||
T Consensus 109 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 188 (274)
T PRK14265 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188 (274)
T ss_pred CCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 111110 0111111000000 01112334556676665 35678899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+. ...++|++||+.. +.+++|
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999998665555443 3358999999964 444443
No 311
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.84 E-value=6e-22 Score=182.72 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=104.0
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc---CcEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS---SDIV 143 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~---~d~i 143 (317)
|+|+||||||||+++|+|...| .+|.|.++|.++... +. .....++.+|....+.. .+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~i~g~~i~~~--~~----~~~~i~~v~q~~~l~~~~tv~enl 63 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----------DSGSIMLDGEDVTNV--PP----HLRHINMVFQSYALFPHMTVEENV 63 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--CH----HHCCEEEEecCccccCCCcHHHHH
Confidence 5899999999999999999988 899999999865321 10 11122222222211111 1222
Q ss_pred EEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHh
Q 021103 144 LMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 144 ~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l 210 (317)
.+... ..........+.++++.+++ ..++++.+|||||+||++|| +++||||++||+.....+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 11111 11112223467788999999 57889999999999999998 9999999999999866555444
Q ss_pred ---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 211 ---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 211 ---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
.. ..++|++|||.+ +..++| .++++++.-+.
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~~~d----------~i~vl~~G~i~ 180 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSD----------RIAIMRKGKIA 180 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 32 238999999954 344444 35566655443
No 312
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.8e-21 Score=156.52 Aligned_cols=168 Identities=20% Similarity=0.152 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCC-----ccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG-----IIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g-----~~~~~~~~~ 127 (317)
.++++.+..|++++|=||+|+||||||++|.+.+.+ ++|.|.+.-.. ..+|... +..-.+..+
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-----------d~G~I~v~H~g-~~vdl~~a~pr~vl~vRr~Ti 95 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----------DEGQILVRHEG-EWVDLVTAEPREVLEVRRTTI 95 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-----------CCceEEEEeCc-chhhhhccChHHHHHHHHhhh
Confidence 577888889999999999999999999999999988 89999874211 1223221 112234567
Q ss_pred hhHHHHHhhhccCcEEEEEec-----CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------ee
Q 021103 128 GRGRQVIAVSKSSDIVLMVLD-----ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~-----~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
+++.|++..++....+..+.. +........++..+|.++++ .-.-.|..+|||++||++|| ++
T Consensus 96 GyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 96 GYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE
Confidence 788888887776444333221 22233345678889999998 45667899999999999999 89
Q ss_pred ecCCCCCCCHHHHHHHHH---HhcccC-cEEEecCCCChhh-HHHHH
Q 021103 191 STLPLTHVDEKLCYQILH---EYKIHN-AEVLFREDATVDD-LIDVI 232 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~---~l~~~~-~~i~~shd~~~~~-~~~~~ 232 (317)
+||||+.||..+...+++ +-+..| +++-+-||.++.+ ++|++
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhe
Confidence 999999999887555544 444555 8899999977654 44553
No 313
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.84 E-value=9.7e-22 Score=198.86 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...+++.|
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~l~~~~~~~l----r~~i~~v~Q 546 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-----------TEGSVLLDGVDIRQIDPADL----RRNIGYVPQ 546 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhccEEECC
Confidence 478899999999999999999999999999999988 89999999988765442221 112222233
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ .+...-..|||||+||+++|
T Consensus 547 ~~~lf~~TI~eNi~~~~----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i 622 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGA----PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI 622 (694)
T ss_pred ChhhhhhhHHHHHhCCC----CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22332211 11223344555555544 22334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+++...+.+.+. ...|+|++||+...... ...|+++++.-+..
T Consensus 623 liLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~----------~D~iivl~~G~i~e 679 (694)
T TIGR03375 623 LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL----------VDRIIVMDNGRIVA 679 (694)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh----------CCEEEEEeCCEEEe
Confidence 99999999999998777766665 33599999999764443 34577887765543
No 314
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1e-21 Score=179.67 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=105.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .|.+|.|.++|.++...... .. ......++.+|
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~------~p~~G~I~i~g~~i~~~~~~-~~-~~~~~i~~v~q 133 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKA------ARIDGSVELDGQDIYQDGVN-LV-ELRKRVGMVFQ 133 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccccc-HH-HHhhceEEEcc
Confidence 577888999999999999999999999999999752000 01689999999765321100 00 00001111111
Q ss_pred HHhhhc--cCcEEEEEe------------c--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE-
Q 021103 133 VIAVSK--SSDIVLMVL------------D--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~------------~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia- 188 (317)
....+. ..+++.+.. . ... .......+.++++.+++ ..++++..||+||+||+.||
T Consensus 134 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIAR 213 (305)
T ss_pred CCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHH
Confidence 100000 000010000 0 001 11123456777887776 34678899999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ....++|++||+... .++++
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD 267 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 9999999999999865554444 333589999999654 45554
No 315
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.6e-21 Score=165.07 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++..+++|++.+|+|+||||||||++.++|...| .+|.+.+.|+.+.-.++. ...+..++++..
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~~~~---~elrk~IG~vS~ 113 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKGETI---FELRKRIGLVSS 113 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCCcch---HHHHHHhCccCH
Confidence 678888999999999999999999999999999998 788888888877655541 112222332221
Q ss_pred HH-hhhc----cCcEEEEEecC-------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VI-AVSK----SSDIVLMVLDA-------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~-~~~~----~~d~i~~v~~~-------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+ ..++ ..|+++-.... .....+...+..+|+.+|+ ..++++..||-||+||+.|| +
T Consensus 114 ~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LL 193 (257)
T COG1119 114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELL 193 (257)
T ss_pred HHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEE
Confidence 11 1112 23444322111 1123355678889999999 78999999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhcc---c--C-cEEEecCCCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEYKI---H--N-AEVLFREDAT 224 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~~---~--~-~~i~~shd~~ 224 (317)
|+|||++|||......+++.+.. . + ++++|||..+
T Consensus 194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 99999999999988777766642 2 2 7999999843
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=8.9e-22 Score=212.40 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| ++|.|.++|.++.. +. ......+++..|
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-----------tsG~I~i~G~~i~~-~~----~~~r~~IGy~pQ 2019 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-----------TSGDATVAGKSILT-NI----SDVHQNMGYCPQ 2019 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECcc-hH----HHHhhhEEEEec
Confidence 578899999999999999999999999999999988 89999999987631 10 001111222222
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. .........+.+.++|+.+++ ..++++..||||||||+.+| +++||||+
T Consensus 2020 ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTs 2099 (2272)
T TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099 (2272)
T ss_pred cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 211111 111111111 111112223456778999999 67889999999999999888 89999999
Q ss_pred CCCHHHHHHHHH---HhcccC-cEEEecCCC-ChhhHHHH
Q 021103 197 HVDEKLCYQILH---EYKIHN-AEVLFREDA-TVDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~-~~i~~shd~-~~~~~~~~ 231 (317)
|||+...+.+.+ .+...+ ++|++||+. +++.+||+
T Consensus 2100 GLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2100 GMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 999998665544 443334 899999994 45566654
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=3.1e-21 Score=162.15 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=90.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+||||||||||||++.+ .+|.+.+.+.. .. +
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~-~~-----~------------- 57 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFL-PK-----F------------- 57 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcc-cc-----c-------------
Confidence 57889999999999999999999999999852 35777665431 00 0
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~L 198 (317)
.. ..+.++.. .++|+.+++ .+++++..||+||+||++++ +++||||++|
T Consensus 58 -----~~-~~~~~~~q-----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 58 -----SR-NKLIFIDQ-----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -----cc-ccEEEEhH-----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 00 00111110 356788887 36888999999999999987 8999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCChhh
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATVDD 227 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~~~ 227 (317)
|+.....+.+.+. .. .++|++||+.+..+
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9998665555443 23 49999999976443
No 318
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.84 E-value=1.1e-21 Score=195.03 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-++...++ ...++..|
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~r----~~i~~v~Q 416 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-----------QSGRILIDGTDIRTVTRASLR----RNIAVVFQ 416 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEhhhCCHHHHH----hheEEEec
Confidence 577889999999999999999999999999999988 899999999887544322111 11222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+...++..++ ........|||||+||+++|
T Consensus 417 ~~~lf~~Ti~~Ni~~~~----~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGR----PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred CcccccccHHHHHhcCC----CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22332211 11112234444444443 22334457999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+++...+++.+. ...++|++||+....+. ...+++++...+.
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~----------~D~ii~l~~G~i~ 548 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN----------ADRILVFDNGRVV 548 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh----------CCEEEEEECCEEE
Confidence 99999999999999777766664 23599999999765443 3456777665444
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=4.8e-22 Score=177.16 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=99.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-----------ECCeeEEEecCCCccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGIIE 121 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-----------~~g~~i~~~d~~g~~~ 121 (317)
.+++ .+.+|++++|+|+||||||||+++|+|...| ++|.|. ++|.++...... ...
T Consensus 18 ~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 84 (255)
T cd03236 18 HRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFTK-LLE 84 (255)
T ss_pred hcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhHH-hhh
Confidence 3555 3678999999999999999999999999988 889986 334332110000 000
Q ss_pred cccCCchhHHHHHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 122 GASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
. .....+..+....... .+.+...+ ........+.++++.+++ ..++.+..||+||+||++++
T Consensus 85 ~-~~~i~~~~~~~~~~~~~~~~~i~~~l---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 85 G-DVKVIVKPQYVDLIPKAVKGKVGELL---KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred c-ccceeeecchhccCchHHHHHHHHHh---chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 0 0000000111100000 00000000 111223467788999998 56888999999999999988
Q ss_pred eeecCCCCCCCHHHHH---HHHHHhccc-CcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCY---QILHEYKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~---~~l~~l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.... ++++.+... .++|++||+....
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 8999999999999755 445554433 4899999996543
No 320
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=3.2e-21 Score=163.58 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=90.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.+.++|.++...+.. ......
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~------ 76 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVTRRSPR---DAIRAG------ 76 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccCHH---HHHhCC------
Confidence 567888889999999999999999999999999988 899999999765321100 000000
Q ss_pred HHhhhccCcEEEEEecCC--CchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
+.++.... ........+.+.+... ..||+||+||+.+| +++||||++||+.
T Consensus 77 ----------i~~~~q~~~~~~~~~~~t~~e~l~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 77 ----------IAYVPEDRKREGLVLDLSVAENIALS--------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred ----------eEEecCCcccCcccCCCcHHHHHHHH--------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 11111100 0000000111111110 01999999999988 9999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCC-ChhhHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDA-TVDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~-~~~~~~~ 230 (317)
....+.+.+ ... .++|++||+. .+.++++
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSELDELLGLCD 172 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 866555544 333 4999999995 4445443
No 321
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-21 Score=175.28 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=104.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| +|++ +.+|.|.++|.++...+. ... .......++..
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~---~~sG~i~~~g~~~~~~~~-~~~~~~~~~~i~~~~ 105 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL---YPGN---HYEGEIILHPDNVNILSP-EVDPIEVRMRISMVF 105 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---CCCC---CcccEEEEcCcccccccc-ccCHHHHhccEEEEc
Confidence 678888999999999999999999999999999764 1111 257999998866532110 000 00011111111
Q ss_pred HHHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+....+. ..+++.+... .. ......+.+.++++.+++ ..++.+..||+||+||+.++ +++
T Consensus 106 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 185 (265)
T PRK14252 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185 (265)
T ss_pred cCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1110000 0111111110 00 011112345566666664 34678899999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+.+.+. ...++|++||+.+ +.+++|
T Consensus 186 DEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 186 DEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSD 228 (265)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCC
Confidence 99999999998665555443 3348999999954 334443
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=1.2e-21 Score=192.42 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|++|||||||+|+|+|...| .+|.|.++|.++.-+ .. ..+...+++.|
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~i~g~~i~~~-~~----~lr~~i~~V~Q 415 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-----------LQGEVTLDGVSVSSL-QD----ELRRRISVFAQ 415 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhH-HH----HHHhheEEEcc
Confidence 578899999999999999999999999999999988 899999999876532 11 11222233333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ .....-..|||||+||+++|
T Consensus 416 ~~~lF~~TI~eNI~~g~----~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGR----PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred CcccccccHHHHHhccC----CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3322222 23333221 12233456666666655 11223457999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFRED 222 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd 222 (317)
+++||||++||.++...+.+.+.. ..|+|++||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999999987777766653 3499999997
No 323
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.7e-21 Score=188.61 Aligned_cols=184 Identities=16% Similarity=0.097 Sum_probs=128.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
++++|++++|+.+|||||+|+||||+.+.|.+.+.| .+|.|.+||.++.-+|..-+ +..++.+.|
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-----------tsG~IllDG~~i~~~~~~~l----r~~Ig~V~Q 549 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-----------TSGRILLDGVPISDINHKYL----RRKIGLVGQ 549 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCeehhhcCHHHH----HHHeeeeec
Confidence 789999999999999999999999999999999988 99999999999876663221 122333334
Q ss_pred HHhhhcc--CcEEEEEecCCCchhh-----HHHHHHHHHHccc----cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGH-----RQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~-----~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
..-++.. .|+|.+..+....++. ...+.+++..|-- ....+-.+||||||||++|| +|+|
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 3333322 4666666552211111 1112223333322 44556679999999999999 9999
Q ss_pred CCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 193 LPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 193 EPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
|.||+||.++ +++.++.+....|++++.|....-+ ...+|+|++|.-+...+..+++.+
T Consensus 630 EATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~----------~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 630 EATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR----------HADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred chhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh----------hccEEEEEcCCeEEecccHHHHhh
Confidence 9999999886 5666666556679999999843222 356899999998776554444443
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.2e-21 Score=193.08 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=107.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEec-CCCccccccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLD-LPGIIEGASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d-~~g~~~~~~~~~~~ 129 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++ ..+.++. .+.+.....
T Consensus 21 l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~~~~~~~t----- 84 (552)
T TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAPGIKVGYLPQEPQLDPTKT----- 84 (552)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCCCCCCc-----
Confidence 3678899999999999999999999999999999887 789998864 2344332 122211100
Q ss_pred HHHHHhh-hc-----------------cCcE-----------EEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccc
Q 021103 130 GRQVIAV-SK-----------------SSDI-----------VLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYF 179 (317)
Q Consensus 130 ~~~~~~~-~~-----------------~~d~-----------i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~ 179 (317)
+.+.... +. ..+. +.-.++.........++.++++.+++ ..++++.+|||
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 0011000 00 0000 00000000000012345667888888 56788999999
Q ss_pred cceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 180 KKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 180 g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
||+||+.|| +++||||++||+.....+.+.+.. .+++|++|||.. +..++|.
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCe
Confidence 999999988 999999999999998777766653 359999999955 3444443
No 325
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=7.3e-20 Score=173.77 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEE
Q 021103 24 EYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI 103 (317)
Q Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~ 103 (317)
+...+.++.++.++++++......+..+.. .....+...|+|+|++|||||||||+|+|....++++||||+++..+.
T Consensus 161 e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~--~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~ 238 (426)
T PRK11058 161 ETDRRLLRNRIVQILSRLERVEKQREQGRR--ARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR 238 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE
Confidence 333445566666666554443322211000 000112358999999999999999999998877899999999999999
Q ss_pred EEECCe-eEEEecCCCccccccCC-chhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccc
Q 021103 104 IHYNDT-KIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKK 181 (317)
Q Consensus 104 i~~~g~-~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~ 181 (317)
+.+.+. ++.++||+|++...... ...+......+..+|++++++|++++..... +.
T Consensus 239 i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~-l~--------------------- 296 (426)
T PRK11058 239 IDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQEN-IE--------------------- 296 (426)
T ss_pred EEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHH-HH---------------------
Confidence 988775 88899999985432221 1112233445678999999999876532111 10
Q ss_pred eeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHH
Q 021103 182 KKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKL 259 (317)
Q Consensus 182 ~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l 259 (317)
....++..+. ....|+++|+||+|+..... ....
T Consensus 297 --------------------~v~~iL~el~------------------------~~~~pvIiV~NKiDL~~~~~~~~~~~ 332 (426)
T PRK11058 297 --------------------AVNTVLEEID------------------------AHEIPTLLVMNKIDMLDDFEPRIDRD 332 (426)
T ss_pred --------------------HHHHHHHHhc------------------------cCCCCEEEEEEcccCCCchhHHHHHH
Confidence 0111121111 01479999999999974311 1111
Q ss_pred -hcCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 260 -ARQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 260 -~~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...+..+.+||++|.|+++|.+.|.+.+.
T Consensus 333 ~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred hcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11233588999999999999999988874
No 326
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.84 E-value=1e-21 Score=194.58 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~Q 413 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-----------DSGQILLDGHDLADYTLASL----RRQVALVSQ 413 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEeHHhcCHHHH----HhhceEEcc
Confidence 577889999999999999999999999999999988 89999999987654332111 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ......+.+.+.++.+++ .....-..|||||+||+++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~---~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i 490 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGR---TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI 490 (571)
T ss_pred CcccccccHHHHHhcCC---CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 2222211 12222111 012233456666666655 12223357999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~ 230 (317)
+++||||++||..+...+++.+. ...++|++||+......+|
T Consensus 491 llLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCC
Confidence 89999999999998777766654 3359999999986655444
No 327
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=1.1e-21 Score=199.00 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=115.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...++ ...+++.|
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v~Q 555 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-----------RSGEILLNGFSLKDIDRHTLR----QFINYLPQ 555 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCcEEEECCEEHHHcCHHHHH----HheEEEec
Confidence 578899999999999999999999999999999988 899999999887544422211 11222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+..+ +....+.+.+.++..++ ........|||||+||+++|
T Consensus 556 ~~~lf~gTI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred CceehhHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 2222211 233322211 11122334444444443 23344578999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||.++...+.+.+.. ..|+|++||+...... ...++++++.-+.
T Consensus 633 liLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~----------~D~i~~l~~G~i~ 687 (708)
T TIGR01193 633 LILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ----------SDKIIVLDHGKII 687 (708)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc----------CCEEEEEECCEEE
Confidence 999999999999987766666543 3599999999765443 3457777765544
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=4.9e-21 Score=191.27 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~ 129 (317)
-.++++.+.+|+.+||+||||||||||+++|+|...+. ..+|.|.++|.++.. ....|+..+...-.
T Consensus 84 L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---------~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~-- 152 (659)
T PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN---------NFTGTILANNRKPTKQILKRTGFVTQDDILY-- 152 (659)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---------ceeEEEEECCEECchhhccceEEECcccccC--
Confidence 36788999999999999999999999999999998651 148999999986521 00012221110000
Q ss_pred HHHHHhhhccCcEEEEEe--c---CCCchhhHHHHHHHHHHccc--cc-----cccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKSSDIVLMVL--D---ASKSEGHRQILTKELEAVGL--RL-----NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~--~---~~~~~~~~~~~~~~L~~~~l--~~-----~~~~~~LS~g~~qr~~ia--------- 188 (317)
..+...+.+.+.. . ........+.+.++++.+|+ .. +.....|||||+||+.+|
T Consensus 153 -----~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 153 -----PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred -----CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 0001111111100 0 01112233457788999998 22 345678999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---cc-CcEEEecCCCC--hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IH-NAEVLFREDAT--VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~--~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||+|||......+++.+. .. .++|+++|++. +.+++|. ++++++..+.
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~----------iilL~~G~iv 286 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS----------VLVLSEGRCL 286 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce----------EEEecCCcEE
Confidence 89999999999998666555543 33 49999999975 3455543 5566655444
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.83 E-value=6.1e-21 Score=155.72 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=83.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++...+|+.++|+|+||+|||||+++|+|..++ .+|.|.++|.. +.+
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~~i~~------------------ 67 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTVKIGY------------------ 67 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeEEEEE------------------
Confidence 577889999999999999999999999999999988 89999997631 100
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
+ .+||+||+||++++ +++|||+++||+..
T Consensus 68 --------------~----------------------------~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 68 --------------F----------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred --------------E----------------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 0 01899999999888 89999999999998
Q ss_pred HHHHHHHhcc-cCcEEEecCCCC
Q 021103 203 CYQILHEYKI-HNAEVLFREDAT 224 (317)
Q Consensus 203 ~~~~l~~l~~-~~~~i~~shd~~ 224 (317)
...+.+.+.. ..+++++||+.+
T Consensus 106 ~~~l~~~l~~~~~til~~th~~~ 128 (144)
T cd03221 106 IEALEEALKEYPGTVILVSHDRY 128 (144)
T ss_pred HHHHHHHHHHcCCEEEEEECCHH
Confidence 7777666653 348999999954
No 330
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.83 E-value=8.1e-22 Score=169.77 Aligned_cols=137 Identities=19% Similarity=0.054 Sum_probs=90.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+.. .......++.
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 82 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-----------TEGEILFKGEDITDLPPE---ERARLGIFLA 82 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------CccEEEECCEECCcCCHH---HHhhCcEEEe
Confidence 5778888899999999999999999999999994 45 899999999765322100 0000001111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
++....+ .. ..+.+.+ ......||+||+||+.++ +++||||++||+.
T Consensus 83 ~q~~~~~-------------~~----~~~~~~l-------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 83 FQYPPEI-------------PG----VKNADFL-------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred ecChhhc-------------cC----ccHHHHH-------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1110000 00 0111222 223368999999999988 8999999999998
Q ss_pred HHHHHHHHh---cc-cCcEEEecCCCChhh
Q 021103 202 LCYQILHEY---KI-HNAEVLFREDATVDD 227 (317)
Q Consensus 202 ~~~~~l~~l---~~-~~~~i~~shd~~~~~ 227 (317)
....+++.+ .. ..++|++||+.+...
T Consensus 139 ~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 865554444 33 348999999965443
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=5.1e-21 Score=161.00 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=80.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
+.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|..+.++. |.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~----------------q~--- 69 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYKP----------------QY--- 69 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEEc----------------cc---
Confidence 56778999999999999999999999999988 8999999886543210 00
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
..||+||+||+++| +++||||++||+.....+.
T Consensus 70 --------------------------------------~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~ 111 (177)
T cd03222 70 --------------------------------------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA 111 (177)
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 00899999999988 8999999999999866554
Q ss_pred HHh---cc-c-CcEEEecCCCCh
Q 021103 208 HEY---KI-H-NAEVLFREDATV 225 (317)
Q Consensus 208 ~~l---~~-~-~~~i~~shd~~~ 225 (317)
+.+ .. . .+++++||+...
T Consensus 112 ~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 112 RAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHHHHcCCCEEEEEECCHHH
Confidence 444 32 3 489999999653
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=3.3e-21 Score=187.55 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc-cccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~-~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++ +.+|.|.++|.++. .+. ........++..
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~----------~~~G~i~~~g~~~~----~~~~~~~~~~~i~~v~ 342 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ----------GYSNDLTLFGRRRG----SGETIWDIKKHIGYVS 342 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc----------ccCCeEEEecccCC----CCCCHHHHHhhceEEC
Confidence 577888999999999999999999999999997542 14799999886531 010 000111222222
Q ss_pred HHHhhhc-----cCcEEEEE-ec---CC--CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------
Q 021103 132 QVIAVSK-----SSDIVLMV-LD---AS--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~~~~-----~~d~i~~v-~~---~~--~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|...... ..+++... .+ .. ......+.+.++++.+++ ..++++.+|||||+||+.+|
T Consensus 343 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l 422 (490)
T PRK10938 343 SSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTL 422 (490)
T ss_pred HHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2211110 01111100 00 00 111223467888999998 25778899999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHH---hccc-C-cEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHE---YKIH-N-AEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~---l~~~-~-~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+. +... + ++|++|||.+..
T Consensus 423 llLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 423 LILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 999999999999986665554 4333 3 599999996543
No 333
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.83 E-value=3.1e-21 Score=191.38 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 416 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILIDGIDINTVTRESL----RKSIATVFQ 416 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-----------CCCEEEECCEEhhhCCHHHH----HhheEEEcc
Confidence 577899999999999999999999999999999988 89999999987654332111 111112222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++.. |+ ........|||||+||+++|
T Consensus 417 ~~~lf~~ti~~Ni~~~~----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGR----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred CCccCcccHHHHHhcCC----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2111111 12222211 111111222222222 22 34456778999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+++||||++||.++...+.+.+. ...++|++||+.+.... ...++++++..+...
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~----------~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN----------ADLVLFLDQGRLIEK 550 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc----------CCEEEEEECCEEEEE
Confidence 99999999999998776665554 34599999999654332 345778877655433
No 334
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=6.9e-21 Score=161.00 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=90.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. + . ..
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~-----~-~---------~~ 72 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPVSD-----L-E---------KA 72 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEHHH-----H-H---------HH
Confidence 578899999999999999999999999999999887 88999998875411 0 0 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. + ..+.++.+.... .. ..+.+.+ +..||+||+||+.+| +++||||++||+...
T Consensus 73 ~----~--~~i~~~~q~~~~-~~-~tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~ 134 (178)
T cd03247 73 L----S--SLISVLNQRPYL-FD-TTLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134 (178)
T ss_pred H----H--hhEEEEccCCee-ec-ccHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0 0 001111110000 00 0111111 678999999999988 999999999999886
Q ss_pred HHHHHHhc---ccCcEEEecCCCChhh
Q 021103 204 YQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 204 ~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
..+++.+. ...++|++||+.....
T Consensus 135 ~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 135 RQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 65555443 3348999999966443
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=7.9e-21 Score=159.58 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||+|||||+++|+|...| .+|.+.++|.++...+.. .
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~--------------~ 73 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-----------TSGEILIDGVDLRDLDLE--------------S 73 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhhhcCHH--------------H
Confidence 578899999999999999999999999999999988 889999998765321100 0
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. + ..+.++...... .. ..+.+.+ ||+||+||+.++ +++||||++||+...
T Consensus 74 ~----~--~~i~~~~~~~~~-~~-~t~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~ 132 (171)
T cd03228 74 L----R--KNIAYVPQDPFL-FS-GTIRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETE 132 (171)
T ss_pred H----H--hhEEEEcCCchh-cc-chHHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 0 0 001111110000 00 0111111 999999999988 999999999999886
Q ss_pred HHHHHHh---cccCcEEEecCCCChhh
Q 021103 204 YQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 204 ~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
..+.+.+ ....+++++||+.+..+
T Consensus 133 ~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 133 ALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 6554444 33348999999965443
No 336
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=6.6e-20 Score=169.98 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch----hHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG----RGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~----~~~~~~~~ 136 (317)
..++||||+||+|||||+|+|+|.... +++.||||+|+....+.++|+.+.++||+|+++...-..+ ........
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 579999999999999999999999975 8999999999999999999999999999999764332211 12334456
Q ss_pred hccCcEEEEEecCCCchhhHH-HHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 SKSSDIVLMVLDASKSEGHRQ-ILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~-~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
+..+|++++++|+..+...++ ++..+.
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i---------------------------------------------------- 285 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLI---------------------------------------------------- 285 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHH----------------------------------------------------
Confidence 678999999999876543222 111111
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--hHH----HH------hcCCCeEEEeccccccHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVD----KL------ARQPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~----~l------~~~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ..++++++|+||||+.... ..+ .+ ..+.+.+++||+++.++++|.+.+
T Consensus 286 -----------------~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 286 -----------------E--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred -----------------H--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence 1 1258999999999998642 121 11 246789999999999999999988
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+..
T Consensus 347 ~~~~ 350 (444)
T COG1160 347 KEIY 350 (444)
T ss_pred HHHH
Confidence 7754
No 337
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.5e-19 Score=155.89 Aligned_cols=193 Identities=27% Similarity=0.359 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE
Q 021103 27 LGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY 106 (317)
Q Consensus 27 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~ 106 (317)
+.+++++++++++++......+.+++.. ....+-.+++|+|++|||||||+|.|++....+.+++++|.++..+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~ 85 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRRR--RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh--hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe
Confidence 4455566666665544433222211111 11223468999999999999999999998766788899999999999988
Q ss_pred CCe-eEEEecCCCccccccCCc-hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceee
Q 021103 107 NDT-KIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKT 184 (317)
Q Consensus 107 ~g~-~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr 184 (317)
.+. ++.++||||+.+...... .........+..+|.+++++|+..+..... ...+
T Consensus 86 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~-~~~~---------------------- 142 (204)
T cd01878 86 PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQ-IETV---------------------- 142 (204)
T ss_pred cCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhH-HHHH----------------------
Confidence 776 899999999864322211 111122233567899999998765422111 1100
Q ss_pred eeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh--cC
Q 021103 185 GGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA--RQ 262 (317)
Q Consensus 185 ~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~--~~ 262 (317)
..++..+ . ....|+++|+||+|+.......... ..
T Consensus 143 -------------------~~~l~~~----------------------~--~~~~~viiV~NK~Dl~~~~~~~~~~~~~~ 179 (204)
T cd01878 143 -------------------EKVLKEL----------------------G--AEDIPMILVLNKIDLLDDEELEERLEAGR 179 (204)
T ss_pred -------------------HHHHHHc----------------------C--cCCCCEEEEEEccccCChHHHHHHhhcCC
Confidence 1111111 0 0137999999999997654333111 23
Q ss_pred CCeEEEeccccccHHHHHHHHHHHh
Q 021103 263 PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 263 ~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
..++.+||+++.|++++.+.|.+.+
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 4688999999999999999887653
No 338
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-21 Score=160.42 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=107.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-H
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-G 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~ 130 (317)
..+++|....|+.+.|.||||+||||||++|+|+..| .+|+|+|+|.++.... +......-+ +
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-----------~~G~v~~~~~~i~~~~-----~~~~~~l~yLG 81 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----------DAGEVYWQGEPIQNVR-----ESYHQALLYLG 81 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-----------CCCeEEecCCCCccch-----hhHHHHHHHhh
Confidence 3578899999999999999999999999999999998 9999999987764321 000000000 0
Q ss_pred HHH--HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQV--IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~--~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.+. -..+...+++-|..+.... .....+.+.++.+|+ ..+.++.+||-||++|+++| .++|||+++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 000 0011112222222221211 234568889999999 78999999999999999999 899999999
Q ss_pred CCHHHHHHHHHHhc----ccCcEEEecCCC
Q 021103 198 VDEKLCYQILHEYK----IHNAEVLFREDA 223 (317)
Q Consensus 198 LD~~~~~~~l~~l~----~~~~~i~~shd~ 223 (317)
||.+.+..+-..+. ..+.++..||.+
T Consensus 161 LDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 161 LDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 99987655444443 345788889974
No 339
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=2.3e-19 Score=149.72 Aligned_cols=161 Identities=30% Similarity=0.464 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.|+|+|++|||||||+|+|++....++++|++|+++..|.+.+++. .+.++||||+.........+...+...+..+|.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999998777889999999999999998887 899999999854322221223344445567999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|+.......+.+..+.+.+ ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l-----------------------------------------~~~------------ 108 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNEL-----------------------------------------ELY------------ 108 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHH-----------------------------------------HHh------------
Confidence 999999875411111111111110 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHHh-c--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA-R--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l~-~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......+|.++|+||+|+...... .... . ...++++||+++.|++++.+.|.+.+
T Consensus 109 ----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 109 ----------NPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred ----------CccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 000124799999999999754332 2222 2 34588999999999999999987653
No 340
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=4.1e-21 Score=189.16 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=111.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 399 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-----------TSGSVRLDGADLKQWDRETF----GKHIGYLPQ 399 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEehhhCCHHHH----hhheEEecC
Confidence 578899999999999999999999999999999988 89999999987654332111 111122222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHH---------HHHHHHc--cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQIL---------TKELEAV--GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~---------~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... ....+.+ .+.++.+ |+ ........|||||+||+++|
T Consensus 400 ~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 400 DVELFPGTVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred CcccccccHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2111111 222221111 0111122 2334444 33 34556788999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc----ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~----~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||.+....+.+.+. ...++|++||+....+.+ ..++++++.-+.
T Consensus 476 lilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~----------d~i~~l~~G~i~ 532 (544)
T TIGR01842 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV----------DKILVLQDGRIA 532 (544)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 99999999999998776666554 234999999997544333 346677665443
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=6.9e-21 Score=172.94 Aligned_cols=188 Identities=20% Similarity=0.202 Sum_probs=127.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
++++++...|+.+||||.+|||||||=.+|.++..+ .|.|.|.|.++.-.+-....+ .+.....++|
T Consensus 304 d~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s------------~G~I~F~G~~i~~~~~~~mrp-lR~~mQvVFQ 370 (534)
T COG4172 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS------------QGEIRFDGQDIDGLSRKEMRP-LRRRMQVVFQ 370 (534)
T ss_pred ccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc------------CceEEECCccccccChhhhhh-hhhhceEEEe
Confidence 678888899999999999999999999999999876 599999998775433221111 1111111112
Q ss_pred HHh--hhcc---CcEEE---EEec-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA--VSKS---SDIVL---MVLD-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~--~~~~---~d~i~---~v~~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .-+. .+++. .+-. .....+..+++.+.|+.+|+ ..+++|.++||||+||.+|| +++
T Consensus 371 DPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 371 DPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 110 0000 11111 1111 11223345678899999999 68899999999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHH---hcc-cC-cEEEecCCCChhh-HHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 192 TLPLTHVDEKLCYQILHE---YKI-HN-AEVLFREDATVDD-LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~---l~~-~~-~~i~~shd~~~~~-~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
|||||.||.....++++. ++. .+ +.+++|||..+.+ +| ..++|+-..-++..+..+.+...+
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~----------~~viVm~~GkiVE~G~~~~if~~P 518 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC----------HRVIVMRDGKIVEQGPTEAVFANP 518 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh----------ceEEEEeCCEEeeeCCHHHHhcCC
Confidence 999999999876555554 443 34 8999999966543 33 347788888777666555555433
No 342
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=4.8e-21 Score=190.03 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++.+|
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~~~Q 421 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-----------QSGRILLDGVDLRQLDPAEL----RARMALVPQ 421 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HHhceEEcc
Confidence 578899999999999999999999999999999988 89999999987754432111 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ ........|||||+||+++|
T Consensus 422 ~~~lf~~Ti~~Ni~~~~----~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i 497 (576)
T TIGR02204 422 DPVLFAASVMENIRYGR----PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497 (576)
T ss_pred CCccccccHHHHHhcCC----CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe
Confidence 2222221 23332211 11122345555555543 22334567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.+...+.+.+. ...++|++||+......+ ..+++++..-+.
T Consensus 498 lilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~----------d~vi~l~~g~~~ 553 (576)
T TIGR02204 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA----------DRIVVMDQGRIV 553 (576)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC----------CEEEEEECCEEE
Confidence 89999999999998666655554 335999999997655433 345566554433
No 343
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=160.88 Aligned_cols=159 Identities=26% Similarity=0.387 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhcc-
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS- 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~- 139 (317)
...+.|.|+||+|||||+++|++..+.+++|||||....-|.+..++..++.+||||+.+....... ...|....+++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999875443322 23344444444
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
.++++|++|.+.. .|...+....++++++
T Consensus 248 ~~~IlF~~D~Se~-------------------------------------------cgy~lE~Q~~L~~eIk-------- 276 (346)
T COG1084 248 AGVILFLFDPSET-------------------------------------------CGYSLEEQISLLEEIK-------- 276 (346)
T ss_pred cCeEEEEEcCccc-------------------------------------------cCCCHHHHHHHHHHHH--------
Confidence 7888899887532 2233333334444332
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc------CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR------QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~------~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ...|+++|+||+|+...+.++++.. ....+.+|+..+.+++.+.+.+...
T Consensus 277 --------------~~-f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 277 --------------EL-FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred --------------Hh-cCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 11 1378999999999997776654321 2335678999999999998888765
No 344
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=4.8e-21 Score=193.75 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...++ ...+++.|
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~idg~~i~~~~~~~~r----~~i~~v~q 538 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-----------QHGQVLVDGVDLAIADPAWLR----RQMGVVLQ 538 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEehhhCCHHHHH----HhCeEEcc
Confidence 578899999999999999999999999999999988 899999999987654422111 11122222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .......+|||||+||+++|
T Consensus 539 ~~~lf~~ti~eNi~~~----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 539 ENVLFSRSIRDNIALC----NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred CCeehhhhHHHHHhcC----CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2111111 2222221 111122334444444433 23445678999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+++||||++||+.+...+.+.+. ...|+|++||+......+ ..++++++.-+...
T Consensus 615 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~----------d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 615 LIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC----------DRIIVLEKGQIAES 672 (694)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC----------CEEEEEeCCEEEEe
Confidence 99999999999998777766664 235999999997544433 44677776655433
No 345
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.83 E-value=3.1e-21 Score=189.53 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=108.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+|+|+|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~I~~~g~~i~~~~~~~l----r~~i~~v~Q 403 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----------TEGSIAVNGVPLADADADSW----RDQIAWVPQ 403 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEehhhCCHHHH----HhheEEEcC
Confidence 578899999999999999999999999999999988 89999999988765442211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ .......+|||||+||+++|
T Consensus 404 ~~~lf~~ti~~Ni~~~~----~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i 479 (529)
T TIGR02857 404 HPFLFAGTIAENIRLAR----PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL 479 (529)
T ss_pred CCcccCcCHHHHHhccC----CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 2222211 22222211 11122345555555554 22334568999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLI 229 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~ 229 (317)
+++||||++||+++...+.+.+.. ..|+|++||+......+
T Consensus 480 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 523 (529)
T TIGR02857 480 LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERA 523 (529)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence 999999999999987777666653 34999999997544433
No 346
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=1.2e-20 Score=162.96 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=95.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~ 130 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++| .+.++ +.+.+..
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-----------~~G~i~~~g-~i~~~~q~~~l~~--------- 79 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-----------LSGSVSVPG-SIAYVSQEPWIQN--------- 79 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCCeEEEcC-EEEEEecCchhcc---------
Confidence 3578899999999999999999999999999999887 899999988 44333 1221110
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+++.+.... .. ....+.++.+++ .....+..||+||+||+++|
T Consensus 80 ------~t~~enl~~~~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l 148 (204)
T cd03250 80 ------GTIRENILFGKPF-DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI 148 (204)
T ss_pred ------CcHHHHhccCCCc-CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 0011111111110 11 111122222221 24556789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHH----hccc-CcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHE----YKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~----l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+++. +... .++|++||+....
T Consensus 149 lllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~ 191 (204)
T cd03250 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL 191 (204)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH
Confidence 999999999999986665543 3233 4899999996543
No 347
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=153.74 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=118.2
Q ss_pred CCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCcccccc-----C
Q 021103 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-----E 125 (317)
Q Consensus 51 ~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~-----~ 125 (317)
+-.+++|...+|+..+|+|.+|+|||||+++|++...| +.|.+.+....=...|.-...+..+ .
T Consensus 21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-----------~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-----------DAGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-----------CCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 34688999999999999999999999999999999988 8899887532211122111111000 0
Q ss_pred CchhHHHHHhhhccCcEEEEEecCC-------------CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDAS-------------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~-------------~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia- 188 (317)
..+.+.|. ..|-+-.-+.+. .-....+.+.++|+.+.+ ..+..|..+|||++||+.||
T Consensus 90 eWG~VhQn-----P~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 90 EWGFVHQN-----PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred ccceeecC-----ccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 01111111 123232222211 111123456788999998 78889999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||.+||......+++.+. ..+ +++++|||..+.++.. ..+.|+...+.+
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla---------~rlmvmk~g~vv 231 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---------DRLMVMKQGQVV 231 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhh---------hcceeecCCCEe
Confidence 89999999999988777766664 234 8999999988887653 235566555544
No 348
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.82 E-value=1.2e-20 Score=186.19 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+||||||||||+++|+|...| .+|.|.++|.++...+...+ +...+++.|
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 423 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-----------QEGEILLDGAAVSADSRDDY----RDLFSAIFA 423 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHHH----HhhCcEEcc
Confidence 458899999999999999999999999999999988 89999999987643321111 111222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccc------cCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK------RPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~------~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+.. .++ ..+....+.+.++++.+++ .... ....|||||+||+++| +++||
T Consensus 424 ~~~lf~~ti~~n-------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 424 DFHLFDDLIGPD-------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred Chhhhhhhhhcc-------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2222211 111 0122234557778888887 2221 2367999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh----c-ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 194 PLTHVDEKLCYQILHEY----K-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l----~-~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
||++||+++...+.+.+ . ...++|++||+....+.+ ..++++++.
T Consensus 497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~----------d~i~~l~~G 546 (555)
T TIGR01194 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA----------DQIIKLAAG 546 (555)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC----------CEEEEEECC
Confidence 99999999877665433 2 245999999996544333 446666654
No 349
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.82 E-value=5.6e-21 Score=188.29 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=112.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+...+ +...++..|
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 404 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVTAEQPEDY----RKLFSAVFT 404 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCCCCHHHH----hhheEEEec
Confidence 577888899999999999999999999999999988 89999999987643321111 111222222
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--ccccc-----CCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----PPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~-----~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+... + .+. ......+.+.+.++.+++ ..... -.+|||||+||+++| +++||||+
T Consensus 405 ~~~lf~~t--i---~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 405 DFHLFDQL--L---GPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred ChhHHHHh--h---ccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 22112110 0 000 112234456778888877 22111 358999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc----c-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHEYK----I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+++...+.+.+. . ..++|++||+...... ...++++++..+
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i 527 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH----------ADRLLEMRNGQL 527 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh----------CCEEEEEECCEE
Confidence 999998776655543 2 3599999999654433 344666665543
No 350
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=6e-21 Score=170.64 Aligned_cols=160 Identities=11% Similarity=-0.032 Sum_probs=99.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++.-.+..- .....++.+
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~~~----~~~~i~~v~ 101 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-----------FDGKIVIDGIDISKLPLHT----LRSRLSIIL 101 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-----------CCCeEEECCEEhhhCCHHH----HhhhEEEEC
Confidence 3678899999999999999999999999999999887 8999999997653221100 001111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+. ..+.+... .......... .+.+.++.+ ++ .....+..||+||+||+++| +++
T Consensus 102 q~~~l~~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 180 (257)
T cd03288 102 QDPILFSGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIM 180 (257)
T ss_pred CCCcccccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1110000 00111000 0000000000 112233333 33 34456789999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
||||++||+.....+.+.+. ...++|++||+.....
T Consensus 181 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 219 (257)
T cd03288 181 DEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL 219 (257)
T ss_pred eCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH
Confidence 99999999998665554443 3349999999966543
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.4e-21 Score=162.81 Aligned_cols=165 Identities=19% Similarity=0.110 Sum_probs=113.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+..+|+||||||||||.++|+|.... .+++|.|.++|.+|.-+++. ..++.++...+|
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y---------~Vt~G~I~~~GedI~~l~~~---ERAr~GifLafQ 88 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY---------EVTEGEILFDGEDILELSPD---ERARAGIFLAFQ 88 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc---------eEecceEEECCcccccCCHh---HHHhcCCEEeec
Confidence 467788888999999999999999999999998753 33899999999998654321 223334444444
Q ss_pred HHhhhccCcEEEEEe---cCCC-----chhhHHHHHHHHHHccc---cccccC-CcccccceeeeeeE---------eee
Q 021103 133 VIAVSKSSDIVLMVL---DASK-----SEGHRQILTKELEAVGL---RLNKRP-PQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~---~~~~-----~~~~~~~~~~~L~~~~l---~~~~~~-~~LS~g~~qr~~ia---------lil 191 (317)
....++...+..|+. .... .......+++.++.+++ .+++.+ ..+|||+|+|..|+ .++
T Consensus 89 ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~IL 168 (251)
T COG0396 89 YPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAIL 168 (251)
T ss_pred CCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEe
Confidence 443333222211111 1100 11234567788888888 456655 36999999999876 899
Q ss_pred cCCCCCCCHHHHH---HHHHHhcccC-cEEEecCCCChhhHH
Q 021103 192 TLPLTHVDEKLCY---QILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 192 DEPt~~LD~~~~~---~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
|||-||||.++.+ +.++.+...+ +++++||...+.+.+
T Consensus 169 DE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred cCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9999999998854 4566666544 999999987655543
No 352
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=6.7e-21 Score=188.53 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=112.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ +...++..|
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 396 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-----------SEGDIRFHDIPLTKLQLDSW----RSRLAVVSQ 396 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEHhhCCHHHH----HhheEEEcc
Confidence 578889999999999999999999999999999988 89999999987643321111 111111122
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ ........|||||+||+++|
T Consensus 397 ~~~lf~~ti~~Ni~~~~----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i 472 (569)
T PRK10789 397 TPFLFSDTVANNIALGR----PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI 472 (569)
T ss_pred CCeeccccHHHHHhcCC----CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 12222111 11122233444444333 23345578999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||++||++....+++.+. ...|+|++||+...... ...++++.+..+...+.
T Consensus 473 lllDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~----------~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 473 LILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE----------ASEILVMQHGHIAQRGN 532 (569)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc----------CCEEEEEeCCEEEEecC
Confidence 99999999999998776666554 33599999999754332 34567777665544333
No 353
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.82 E-value=7e-21 Score=188.49 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=118.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++..++|+++||+||+|||||||+|.|++...| .+|.|.++|.++.-++...++ ...+.+.|
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----------~~G~I~idg~dI~~i~~~~lr----~~I~~V~Q 410 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-----------TSGEILIDGIDIRDISLDSLR----KRIGIVSQ 410 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCEehhhcCHHHHH----HhccEEcc
Confidence 578999999999999999999999999999999988 899999999988655432221 11222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++.. |+ .....-..||||||||+++|
T Consensus 411 d~~LF~~TI~~NI~~g~----~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 411 DPLLFSGTIRENIALGR----PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred cceeecccHHHHHhcCC----CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22222221 111122333333333 23 34445568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||.++...+.+.+. ...|+++++|...... ....|+|+++.-+...+..+++.
T Consensus 487 LILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~----------~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 487 LILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIK----------NADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred EEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998666655553 3348999999954332 24568888888766555444443
No 354
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.82 E-value=4.8e-21 Score=191.82 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|..+| .+|.+.++|.++...+...+........++.+|
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 93 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-----------TSGTYRVAGQDVATLDADALAQLRREHFGFIFQ 93 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeC
Confidence 578899999999999999999999999999999988 899999999875432110000000011111112
Q ss_pred HHhhhcc---CcEEEEEe-c-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~-~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.. . ..........+.++++.+++ ..++.+..||+||+||+.+| +++||||+
T Consensus 94 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~ 173 (648)
T PRK10535 94 RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTG 173 (648)
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 1111111 11111100 0 11112234467788999998 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH---hccc-CcEEEecCCCChhhHHH
Q 021103 197 HVDEKLCYQILHE---YKIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~-~~~i~~shd~~~~~~~~ 230 (317)
+||+.....+.+. +... .+++++||+.+..+.||
T Consensus 174 gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d 211 (648)
T PRK10535 174 ALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAE 211 (648)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCC
Confidence 9999986655444 4333 49999999976555443
No 355
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.5e-20 Score=160.90 Aligned_cols=137 Identities=19% Similarity=0.184 Sum_probs=89.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... + .+|++.++|.++. . ......++.
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-----------~~G~i~~~g~~~~--~------~~~~~i~~~ 84 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-----------ITGEILINGRPLD--K------NFQRSTGYV 84 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------cceEEEECCEehH--H------HhhhceEEe
Confidence 57788989999999999999999999999999853 4 7899999987652 0 000011111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.| ... + .. ... +.+.+.. .... ..||+||+||+.+| +++||||++||+.
T Consensus 85 ~q------~~~-~---~~---~~t----v~~~l~~-~~~~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 85 EQ------QDV-H---SP---NLT----VREALRF-SALL----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred cc------cCc-c---cc---CCc----HHHHHHH-HHHH----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 11 000 0 00 000 1111110 0000 18999999999988 8999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCCC--hhhHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDAT--VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~~--~~~~~~ 230 (317)
....+++.+ ... .++|++||+.+ +...+|
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d 177 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence 866555544 333 49999999975 244443
No 356
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.5e-21 Score=167.02 Aligned_cols=150 Identities=19% Similarity=0.114 Sum_probs=93.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. .|.+|.|.++|.++...+ .......++..+
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~~~~-----~~~~~~i~~~~q 90 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYKEFA-----EKYPGEIIYVSE 90 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECccch-----hhhcceEEEEec
Confidence 5788999999999999999999999999999998720 127999999987653211 000111111111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
.... .....-.+.+.-.. . ...++++..||+||+||+.+| +++||||++||+...
T Consensus 91 ~~~~-------------~~~~tv~~~l~~~~-~--~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 91 EDVH-------------FPTLTVRETLDFAL-R--CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred cccc-------------CCCCcHHHHHhhhh-h--hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 0000 00000011111000 0 015678899999999999988 999999999999986
Q ss_pred HHHHHHh---ccc-C-cEEEe-cCC-CChhhHHHH
Q 021103 204 YQILHEY---KIH-N-AEVLF-RED-ATVDDLIDV 231 (317)
Q Consensus 204 ~~~l~~l---~~~-~-~~i~~-shd-~~~~~~~~~ 231 (317)
..+.+.+ ... + +++++ +|+ ..+.+++|+
T Consensus 155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 5554444 332 3 55555 454 345555543
No 357
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.9e-21 Score=179.28 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++++.|++|||+|+|||||||++|+|.+... .+|.|.++|.++.-++..+++ ..++.++|
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~SlR----~~Ig~VPQ 432 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESLR----QSIGVVPQ 432 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHhh----hheeEeCC
Confidence 57888999999999999999999999999999875 589999999988765543322 12223333
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
...++.+ .++..+..+ .+....+.+.+..+++++ ....+-..||||||||+.++ ++
T Consensus 433 d~~LFnd-TIl~NI~YG-n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 433 DSVLFND-TILYNIKYG-NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred cccccch-hHHHHhhcC-CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 2222211 011111111 122233456666666666 23345568999999999998 89
Q ss_pred ecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+|||||+||.++-.++++.+.. ..|+|++-|+.+...-+ ..|+++.+.-..
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~----------DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF----------DKIIVLDNGTVK 564 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC----------CEEEEEECCeeE
Confidence 9999999999998888887753 34999999997665543 346666555433
No 358
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.82 E-value=7.3e-21 Score=172.79 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=126.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+..|+.+||||.+|||||-..+.++++++. .+.+ -+|.|.|+|.++.......+..-....+++.+
T Consensus 27 k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~-------~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH-------PSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccC-------ccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence 578888899999999999999999999999999863 2111 47899999987643322111111111122222
Q ss_pred HHHhhh-c--------cCcEEEEEecCCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------
Q 021103 132 QVIAVS-K--------SSDIVLMVLDASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~~~-~--------~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|..... . -++.+.+. ..........++.++|+.+|+ .++.+|.+|||||+||+.||
T Consensus 100 QEPMtSLNPl~tIg~Qi~E~l~~H-rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l 178 (534)
T COG4172 100 QEPMTSLNPLHTIGKQLAEVLRLH-RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178 (534)
T ss_pred cccccccCcHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe
Confidence 211100 0 00000000 111223455678899999999 68899999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+|+||||+.||.....++|+.+ + ..+ +++++|||..+-+-+ ...+.|+.+..++..+..+.+
T Consensus 179 LIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~---------ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF---------ADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred EeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh---------hhhEEEEeccEEeecCcHHHH
Confidence 9999999999988766655555 4 235 999999996644321 345789999998866554443
No 359
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=1.2e-20 Score=192.20 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=121.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.+||||++||||||+++.|.+.+.| .+|.|.++|.++.-++.+-++ ..++.+.|
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-----------~~G~V~idG~di~~~~~~~lr----~~iglV~Q 434 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWLR----SQIGLVSQ 434 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCceEEEcCccchhcchHHHH----hhcCeeee
Confidence 678999999999999999999999999999999988 999999999998776654332 23344444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHH-------------ccccccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEA-------------VGLRLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~-------------~~l~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.+-.+.. .+++.+.. ++...+.+.+..+. ++-.....-.+||||||||++||
T Consensus 435 ePvlF~~tI~eNI~~G~----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGK----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred chhhhcccHHHHHhcCC----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 4322221 33333322 11112222222222 12244455667999999999999
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
|++||||++||+++ +++.|+....+.|.|+++|+..--+ +...|+|+.+.-++..+.-++
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIr----------naD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIR----------NADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhh----------ccCEEEEEECCEEEEecCHHH
Confidence 99999999999987 4555665566679999999844322 356788888887765443333
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=1.8e-21 Score=192.23 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=102.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-----------ECCeeEEEecC---CC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDL---PG 118 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-----------~~g~~i~~~d~---~g 118 (317)
.+++ ...+|+++||+||||||||||+++|+|...| +.|.|. ++|.++.-... .+
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-----------~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 3455 5778999999999999999999999999988 888886 66654321000 00
Q ss_pred ccccccCCchhHHHHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE------
Q 021103 119 IIEGASEGKGRGRQVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------ 188 (317)
-.. .....++..+....+. ..+++. .......+.++++.+++ ..++++.+|||||+||++||
T Consensus 159 ~~~-~~~~~q~~~~~p~~~~~tv~e~l~-------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 159 EIK-VVHKPQYVDLIPKVFKGKVRELLK-------KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred Ccc-eeecccchhhhhhhhcchHHHHHH-------hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 000 0000000111100000 000000 01123467788999999 57899999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHH
Q 021103 189 ---FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+.+ .+....++|++|||.+ ++.++|+
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999998655544 4434348999999954 4444443
No 361
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.81 E-value=2.7e-20 Score=159.52 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=91.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++... ......++.
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~-------~~~~~i~~~ 87 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-----------VSGEVLINGRPLDKR-------SFRKIIGYV 87 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEeCchH-------hhhheEEEc
Confidence 5788899999999999999999999999999998 77 889999998765310 000111111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.+ .... .....-.+.+. +.. ....||+||+||+.+| +++||||++||+.
T Consensus 88 ~q------~~~~-------~~~~t~~~~i~-~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 88 PQ------DDIL-------HPTLTVRETLM-FAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred cC------cccC-------CCCCcHHHHHH-HHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 11 1000 00000011111 000 0118999999999988 8999999999999
Q ss_pred HHHHHHHHh---cccC-cEEEecCCCC--hhhHHH
Q 021103 202 LCYQILHEY---KIHN-AEVLFREDAT--VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~~-~~i~~shd~~--~~~~~~ 230 (317)
....+.+.+ ...+ ++|++||+.. +.+.+|
T Consensus 146 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 866555544 3333 9999999964 444444
No 362
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.81 E-value=1.2e-20 Score=189.17 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+||||||||||+++|+|..++ ..|.+.+++. .+.++.. |.+.. + -.
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----------~~G~i~~~~~~~i~~v~Q~~~l~~----~--tv 531 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-----------YGGRLTKPAKGKLFYVPQRPYMTL----G--TL 531 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEeecCCCcEEEECCCCCCCC----c--CH
Confidence 578889999999999999999999999999999877 6788877543 2333321 11110 0 01
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--ccccc---------CCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR---------PPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~---------~~~LS~g~~qr~~ia---------li 190 (317)
.+... .... ..+........+.+.++++.+++ ..+++ ...|||||+||+++| ++
T Consensus 532 ~eni~---~~~~---~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 532 RDQII---YPDS---SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred HHHHh---cCCC---hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11110 0000 00000111123456777888887 23332 368999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhcccC-cEEEecCCCChhhHH
Q 021103 191 STLPLTHVDEKLCYQILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
+||||++||++....+.+.+...+ ++|++||+....+.+
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 999999999999887777776545 899999997755443
No 363
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.4e-19 Score=164.32 Aligned_cols=88 Identities=31% Similarity=0.603 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC------------------eeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g------------------~~i~~~d~~g~~~~~~ 124 (317)
-.+||||.||+|||||||+||.....++||||||.+|..|.+++.+ .++.++|.+|+.+.++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4789999999999999999999887789999999999999997742 2568999999999999
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCC
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+.+.+.++++.++.+|.+++|++.+
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 99999999999999999999999865
No 364
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=4e-20 Score=167.00 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|. +.++... .+.. .
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----------~~G~I~i~g~-i~yv~q~~~l~~----~----- 112 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-----------SEGKIKHSGR-ISFSSQFSWIMP----G----- 112 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCE-EEEEeCcccccc----c-----
Confidence 578888999999999999999999999999999888 8899999873 4333211 1100 0
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.. .+.+.+.... .. ..+.+.++.+++ .....+..||+||+||+++| +
T Consensus 113 tv------~enl~~~~~~-~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iL 181 (282)
T cd03291 113 TI------KENIIFGVSY-DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLY 181 (282)
T ss_pred CH------HHHhhccccc-CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 1111111000 00 011122222222 12344679999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhh
Q 021103 190 NSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~ 227 (317)
++||||++||+.....+++. +....++|++||+.....
T Consensus 182 iLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~ 223 (282)
T cd03291 182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (282)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH
Confidence 99999999999986655543 333458999999966544
No 365
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=5.3e-19 Score=148.08 Aligned_cols=162 Identities=35% Similarity=0.524 Sum_probs=109.9
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLM 145 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~ 145 (317)
|+|++|||||||+|+|+|....++++++||+++..|.+.++ +.++.++||||+............++...+..+|.+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987678899999999999999998 99999999999854332222222344555678999999
Q ss_pred EecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 146 VLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 146 v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++|+.... ........+...+. .. ..
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~-~~-------- 111 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELK----------------------------------------LY-DL-------- 111 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHH----------------------------------------Hh-hh--------
Confidence 99986542 11111111111100 00 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH-------hcCCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-------ARQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l-------~~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
..+......+|+++|+||+|+......... .....++++||+++.|++++.+.+...
T Consensus 112 ---------~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 112 ---------ETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ---------hhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000124899999999999865443321 123468999999999999999988764
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=144.34 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=113.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-++++++.+|+++.|+||+|||||||+.-+.|.+.+ -+ .+|++.++++++..+.+. ....+..+
T Consensus 19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~---------~~G~~~l~~~~l~~lPa~------qRq~GiLF 83 (213)
T COG4136 19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS---------CTGELWLNEQRLDMLPAA------QRQIGILF 83 (213)
T ss_pred EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcc---------eeeEEEECCeeccccchh------hhheeeee
Confidence 357888889999999999999999999999999865 22 689999999887655432 22233333
Q ss_pred HHHhhhc---cCcEEEEEecCC-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 QVIAVSK---SSDIVLMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
|....++ ...++++.+... +.......+...|++.++ ..++.|.+|||||+-|+++. +++|||+|
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 4333333 345555554432 222344557788999999 78889999999999998765 89999999
Q ss_pred CCCHHHH----HHHHHHhcccC-cEEEecCCC
Q 021103 197 HVDEKLC----YQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 197 ~LD~~~~----~~~l~~l~~~~-~~i~~shd~ 223 (317)
.||.... .-+..+....+ ..+++|||.
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9997653 33455555555 789999983
No 367
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=2.8e-19 Score=153.61 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=118.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
-.+++|++..|+++||||+||||||||++.|+|.++| ++|.+.++|.-..+++. .|+.+..
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pel------- 104 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPEL------- 104 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCccc-------
Confidence 3688999999999999999999999999999999999 99999999875444442 2332211
Q ss_pred HHHHhhhccCcEEEEE--ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQVIAVSKSSDIVLMV--LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v--~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
...+++.+. +-+....+..+...+..+..++ ..+.++.++|-||+-|++++ |++||.++-
T Consensus 105 -------TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 105 -------TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred -------chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 111111111 1112233334455555555555 78999999999999999887 899999999
Q ss_pred CCHHHHHHH---HHHh-cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 198 VDEKLCYQI---LHEY-KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 198 LD~~~~~~~---l~~l-~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
.|+.-.++. +.++ ....++|++|||.. +.++|| .++.+.|.-+...+.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd----------~~i~l~~G~i~~~G~ 230 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCD----------RAIWLEHGQIRMEGS 230 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcC----------eeEEEeCCEEEEcCC
Confidence 999875554 4444 23459999999944 555554 467778876654433
No 368
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.79 E-value=9.4e-20 Score=181.66 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|||||||||||++|+|...+. ....|+|.++|.++...+ .+...++..
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--------~~~~G~i~~~g~~~~~~~-------~~~~i~yv~ 105 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--------VKGSGSVLLNGMPIDAKE-------MRAISAYVQ 105 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEECCHHH-------Hhhhceeec
Confidence 36889999999999999999999999999999987651 014799999998753110 001111111
Q ss_pred HHHhhh---ccCcEEEEEe--cC---CCchhhHHHHHHHHHHccc--cccccCC------cccccceeeeeeE-------
Q 021103 132 QVIAVS---KSSDIVLMVL--DA---SKSEGHRQILTKELEAVGL--RLNKRPP------QIYFKKKKTGGIS------- 188 (317)
Q Consensus 132 ~~~~~~---~~~d~i~~v~--~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~------~LS~g~~qr~~ia------- 188 (317)
|....+ ...+.+.+.. +. .........+.+.++.+++ ..+..++ .||||||||+.+|
T Consensus 106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 111111 1111111111 10 0112334568889999998 4566665 5999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC--hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT--VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~--~~~~~~~ 231 (317)
+++||||++||..+...+++.+. ..+ ++|+++|++. +.+.+|.
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~ 236 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDK 236 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhce
Confidence 89999999999998666655554 334 8999999964 4555554
No 369
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=3.7e-20 Score=198.47 Aligned_cols=178 Identities=13% Similarity=0.036 Sum_probs=119.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-C-----------------------------------------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEA-A----------------------------------------- 90 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v-~----------------------------------------- 90 (317)
.++++.+++|+++||||++|||||||+++|+|.+.|. +
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 5788999999999999999999999999999998762 1
Q ss_pred -ccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHcc
Q 021103 91 -SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVG 167 (317)
Q Consensus 91 -~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~ 167 (317)
.-+-+|+-|.+|.|.++|.++.-++...++ ..++++.|...++.. .+++.+.. +....+.+.++++..+
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR----~~i~~V~Qep~LF~gTIreNI~~g~----~~at~eeI~~A~k~A~ 1336 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLR----NLFSIVSQEPMLFNMSIYENIKFGK----EDATREDVKRACKFAA 1336 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHH----hhccEeCCCCccccccHHHHHhcCC----CCCCHHHHHHHHHHcC
Confidence 012345667899999999988665543222 223333443333321 33333321 1112234555555544
Q ss_pred c-------------cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-----cCcEEEec
Q 021103 168 L-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-----HNAEVLFR 220 (317)
Q Consensus 168 l-------------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-----~~~~i~~s 220 (317)
+ .....-..||||||||++|| |++||||++||.++.+.+.+.+.. ..|+|+++
T Consensus 1337 l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa 1416 (1466)
T PTZ00265 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416 (1466)
T ss_pred CHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 3 22334567999999999999 999999999999986665555532 34999999
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
|+...-+. ...|+|+++.
T Consensus 1417 HRlsti~~----------aD~Ivvl~~~ 1434 (1466)
T PTZ00265 1417 HRIASIKR----------SDKIVVFNNP 1434 (1466)
T ss_pred chHHHHHh----------CCEEEEEeCC
Confidence 99644332 4568888773
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.79 E-value=1.9e-20 Score=188.31 Aligned_cols=171 Identities=11% Similarity=-0.025 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc---cccc------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI---IEGA------ 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~---~~~~------ 123 (317)
.++++.+..|+++||||+|||||||||++|+|.... + .|..|.|.+.+..+...++.-+ ....
T Consensus 194 ~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~ 265 (718)
T PLN03073 194 VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID-----G---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265 (718)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----C---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHH
Confidence 677889999999999999999999999999997411 1 1356777654332211110000 0000
Q ss_pred -cCCchhHHHHHhhhcc--CcEEEEEe-cCCCc-------------------hhhHHHHHHHHHHccc---cccccCCcc
Q 021103 124 -SEGKGRGRQVIAVSKS--SDIVLMVL-DASKS-------------------EGHRQILTKELEAVGL---RLNKRPPQI 177 (317)
Q Consensus 124 -~~~~~~~~~~~~~~~~--~d~i~~v~-~~~~~-------------------~~~~~~~~~~L~~~~l---~~~~~~~~L 177 (317)
....++..+....... ........ ..... .....++..+|..+|+ ..++++.+|
T Consensus 266 ~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~L 345 (718)
T PLN03073 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTF 345 (718)
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhC
Confidence 0001111111100000 00000000 00000 0123355667788888 367889999
Q ss_pred cccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 178 YFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 178 S~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
||||+||++|| +++||||++||+.....+.+.+... .++|++|||.. +..+|+.
T Consensus 346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 99999999998 9999999999999988887777654 59999999954 4444544
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=7.7e-20 Score=197.29 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=120.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+.+.|
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-----------~~G~I~IdG~di~~i~~~~l----R~~i~iVpQ 1317 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-----------EKGRIMIDDCDVAKFGLTDL----RRVLSIIPQ 1317 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCceEEECCEEhhhCCHHHH----HhhcEEECC
Confidence 578899999999999999999999999999999988 89999999998765442211 112222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.. .. ....+.+.+.++..++ .....-.+||||||||++||
T Consensus 1318 dp~LF~gTIr~NL~~----~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDP----FS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred CCeeeCccHHHHcCC----CC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2222211 122211 11 1223345666666554 22233468999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
+++||||++||.++...+.+.+. ...|+|+++|+...-. ....|+|+++.-+...+..+++.+
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTII----------DCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH----------hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999998655555554 3459999999964332 245688998887765544444443
No 372
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=9.4e-20 Score=150.87 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=85.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+ ..+
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-----------~~G~i~~~~~~~~~~~--------------~~~ 70 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----------TSGEILIDGKDIAKLP--------------LEE 70 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccCC--------------HHH
Confidence 567888889999999999999999999999999877 8999999887542110 000
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. . ..+.++ .+||+||+||+.++ +++||||++||....
T Consensus 71 ~----~--~~i~~~----------------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 71 L----R--RRIGYV----------------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred H----H--hceEEE----------------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 0 0 001111 11899999999887 899999999999886
Q ss_pred HHHHHHhc---cc-CcEEEecCCCChh
Q 021103 204 YQILHEYK---IH-NAEVLFREDATVD 226 (317)
Q Consensus 204 ~~~l~~l~---~~-~~~i~~shd~~~~ 226 (317)
..+.+.+. .. .+++++||+....
T Consensus 117 ~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 117 ERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55555443 33 4899999995543
No 373
>PLN03130 ABC transporter C family member; Provisional
Probab=99.78 E-value=1.2e-19 Score=196.34 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=119.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+.+.|
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-----------~~G~I~IDG~dI~~i~l~~L----R~~IsiVpQ 1320 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-----------ERGRILIDGCDISKFGLMDL----RKVLGIIPQ 1320 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCEecccCCHHHH----HhccEEECC
Confidence 578899999999999999999999999999999988 89999999998765543222 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.. .. ....+.+.++++..++ .....-.+||||||||++||
T Consensus 1321 dp~LF~GTIreNLd~----~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1321 APVLFSGTVRFNLDP----FN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred CCccccccHHHHhCc----CC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 2222221 122211 11 1123446666666554 22233458999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+.++-+...+..+++
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~----------~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID----------CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh----------CCEEEEEECCEEEEeCCHHHH
Confidence 99999999999988555554443 34599999999543322 456888888766644444443
No 374
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=4.7e-18 Score=157.49 Aligned_cols=156 Identities=31% Similarity=0.392 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d 141 (317)
+++|+|++|||||||+|.|+|... .+++.++||++...|.+.+++.++.++||||+...... ...+.......+..+|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aD 133 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSAD 133 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCC
Confidence 999999999999999999999875 47889999999999999999999999999998543221 1112233344577899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|......... .. +++.
T Consensus 134 vil~VvD~~~s~~~~~--~~--------------------------------------------il~~------------ 155 (339)
T PRK15494 134 LVLLIIDSLKSFDDIT--HN--------------------------------------------ILDK------------ 155 (339)
T ss_pred EEEEEEECCCCCCHHH--HH--------------------------------------------HHHH------------
Confidence 9999998654221110 00 1111
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh--hHHH-Hhc---CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDK-LAR---QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~-l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+.. ...|.++|+||+|+.... .... +.. +..++++||++|.|+++|.+.|.+.++.
T Consensus 156 ----------l~~--~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 156 ----------LRS--LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred ----------HHh--cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 100 135778899999986431 1222 222 2458999999999999999999988753
No 375
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=7.6e-18 Score=161.60 Aligned_cols=154 Identities=27% Similarity=0.272 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~~ 138 (317)
+.+++|+|++|||||||+|.|+|... .++++||||++...+.+.++|.++.++||||+.... ..... .......+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHH
Confidence 56899999999999999999999875 589999999999999999999999999999986421 11110 122344577
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|...+..... . ..+
T Consensus 294 ~aD~il~VvD~s~~~s~~~-~-~~l------------------------------------------------------- 316 (449)
T PRK05291 294 EADLVLLVLDASEPLTEED-D-EIL------------------------------------------------------- 316 (449)
T ss_pred hCCEEEEEecCCCCCChhH-H-HHH-------------------------------------------------------
Confidence 8999999999865422110 0 000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. ....|+++|+||+|+....... .......+++||+++.|+++|.+.|.+.+..
T Consensus 317 -----------~~----~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 317 -----------EE----LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred -----------Hh----cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 00 1247999999999997543332 1223468899999999999999999988753
No 376
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=1.8e-19 Score=194.49 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=121.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++|||+|++|||||||+++|.|...| .+|.|.++|.++.-++...+ +..+++++|
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-----------~~G~I~IDG~di~~i~l~~L----R~~I~iVpQ 1391 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-----------CGGEIRVNGREIGAYGLREL----RRQFSMIPQ 1391 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccCCHHHH----HhcceEECC
Confidence 578899999999999999999999999999999988 89999999998865543221 222333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.+.++..++ . +...-.+||||||||++||
T Consensus 1392 dp~LF~gTIreNI----dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1392 DPVLFDGTVRQNV----DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred CCccccccHHHHh----Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 3222221 1222 1111 1223456777777665 1 1223367999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+++.-+...+..+++.
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~----------~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ----------YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh----------CCEEEEEECCEEEEECCHHHHH
Confidence 89999999999998655555443 34599999999643332 4568888887666544444443
No 377
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4e-18 Score=164.79 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=116.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d 141 (317)
.++|++|.||+|||||||+|+|....|+||||+|++..+|...+.|.++.++|.||.++-....... +....-.-...|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCC
Confidence 3699999999999999999999999999999999999999999999999999999998654433221 111111224579
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
+++.++|+.+-+.+.....++++
T Consensus 84 ~ivnVvDAtnLeRnLyltlQLlE--------------------------------------------------------- 106 (653)
T COG0370 84 LIVNVVDATNLERNLYLTLQLLE--------------------------------------------------------- 106 (653)
T ss_pred EEEEEcccchHHHHHHHHHHHHH---------------------------------------------------------
Confidence 99999998754333222111111
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
-..|+++++|.+|..... +.+++.+ ..+++++||.+|.|++++++.+.+....
T Consensus 107 ---------------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 107 ---------------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred ---------------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 147899999999987542 2334444 3568999999999999999999876543
No 378
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=3.1e-19 Score=192.94 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=119.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|.|...| .+|.|.++|.++.-++..-+ +...+.+.|
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-----------~~G~I~IdG~dI~~i~~~~L----R~~i~iVpQ 1367 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-----------AEGEIIIDGLNIAKIGLHDL----RFKITIIPQ 1367 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-----------CCCeEEECCEEccccCHHHH----HhcCeEECC
Confidence 578899999999999999999999999999999987 89999999998866543221 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.+.|+..++ .....-.+||||||||++||
T Consensus 1368 dp~LF~gTIr~NL----dp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1368 DPVLFSGSLRMNL----DPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred CCcccCccHHHHc----Cccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 3222221 1222 1111 1223345666666554 12233467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-. ....|+|+.++-+...+..+++
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~----------~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM----------DYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEEEECCHHHH
Confidence 99999999999998555555553 3459999999954332 2456888988766644444443
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=3.3e-19 Score=190.85 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=104.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|+.+||+||||||||||+|+|+|...+ -.+.+|.|.++|.++.. ....|+..+....
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~--------g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~---- 847 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--------GVITGGDRLVNGRPLDSSFQRSIGYVQQQDLH---- 847 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC--------CCcceeEEEECCEECChhhhcceeeecccccC----
Confidence 577888999999999999999999999999999752 01278999999987521 0011222111000
Q ss_pred HHHHhhhccCcEEEEEecC-----CCchhhHHHHHHHHHHccc--cccccCC----cccccceeeeeeE----------e
Q 021103 131 RQVIAVSKSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPP----QIYFKKKKTGGIS----------F 189 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~-----~~~~~~~~~~~~~L~~~~l--~~~~~~~----~LS~g~~qr~~ia----------l 189 (317)
...+...+.+.+.... .......+.+.+.++.+++ ..++.++ .||||||||+.|| +
T Consensus 848 ---~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 848 ---LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLL 924 (1394)
T ss_pred ---CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEE
Confidence 0000001111111000 0111223567889999998 4566665 7999999999887 7
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV 225 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~ 225 (317)
++||||++||......+++.+ ...+ ++|+++|++..
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 999999999998866555444 3334 99999999764
No 380
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=4e-19 Score=181.23 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=130.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+|||||+||||||.+.+|-+.+.| ..|.|.++|.++.-+++..++ ...+.+.|
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-----------~~G~V~IDg~dik~lnl~~LR----~~i~lVsQ 1071 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-----------DAGKVKIDGVDIKDLNLKWLR----KQIGLVSQ 1071 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCcccccCCHHHHH----Hhcceecc
Confidence 788999999999999999999999999999999877 899999999998776654332 22333444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.+.++.. .+++.+..+. ...+.+.++++..+. ....+-.+||||||||++||
T Consensus 1072 EP~LF~~TIrENI~YG~~~----vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1072 EPVLFNGTIRENIAYGSEE----VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred CchhhcccHHHHHhccCCC----CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 4433332 4555554211 122233333333322 34556679999999999999
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
|+|||.||+||.++ +++.|+......|.|++.|....-+ +..+|.|+.+.-++..+.-+.+.+
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq----------naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ----------NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh----------cCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999887 5666666666779999999854332 467899999888777666666554
No 381
>PLN03140 ABC transporter G family member; Provisional
Probab=99.76 E-value=1.2e-18 Score=186.50 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCch-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKG- 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~- 128 (317)
.++++.+.+|+.++|+|||||||||||++|+|...+.. ..+|.|.++|.++.... ..++..+...-..
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~--------~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSL--------KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--------cceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 67889999999999999999999999999999986610 13899999998763221 1222222110000
Q ss_pred -hHHHHHhhh---ccCcE-EEEEecCCCch--------h---------------hHHHHHHHHHHcccc--c-----ccc
Q 021103 129 -RGRQVIAVS---KSSDI-VLMVLDASKSE--------G---------------HRQILTKELEAVGLR--L-----NKR 173 (317)
Q Consensus 129 -~~~~~~~~~---~~~d~-i~~v~~~~~~~--------~---------------~~~~~~~~L~~~~l~--~-----~~~ 173 (317)
-+.+.+... +.... ........... . ....+...|+.+|+. . +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 011211110 00000 00000000000 0 001245678888882 2 556
Q ss_pred CCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCC--ChhhHHHH
Q 021103 174 PPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDA--TVDDLIDV 231 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~--~~~~~~~~ 231 (317)
+..||||||||+.+| +++||||+|||.....++++.++ . .+ |+|+++|++ ++.+++|.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 789999999999998 89999999999998766655554 2 24 899999985 45555543
No 382
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.5e-18 Score=157.97 Aligned_cols=173 Identities=24% Similarity=0.334 Sum_probs=120.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhh
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVS 137 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~ 137 (317)
.|..+||+|+||+|||||+|+|+..... |++.||||||...-.+.++|.++.+.||+|+++........ ..+....+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4789999999999999999999998865 99999999999999999999999999999998733322221 23444566
Q ss_pred ccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 138 KSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
..+|++++++|+...... ...+.+.|+..+- ..
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~----------------------------------------------g~ 380 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGV----------------------------------------------GL 380 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhcc----------------------------------------------ce
Confidence 789999999998432111 1112222222211 01
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-hhHH-----HHh-----cCCCeEEEeccccccHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVD-----KLA-----RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-~~~~-----~l~-----~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....-+ ...|.++++||.|+... .+.. +.. .++-.+.+||.+++|+++|.+.+.+
T Consensus 381 ~~~~~~~-------------~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 381 VVIVNKM-------------EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEeccc-------------cccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 0000000 14789999999999865 1111 222 2334555999999999999999999
Q ss_pred HhCeeEE
Q 021103 286 EMGLVRV 292 (317)
Q Consensus 286 ~l~~~~~ 292 (317)
.+....+
T Consensus 448 ~~~~~~~ 454 (531)
T KOG1191|consen 448 IVERLVV 454 (531)
T ss_pred HHHHhhc
Confidence 8876644
No 383
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.76 E-value=1.9e-18 Score=161.22 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|....|+-+|||||+|||||||.++|.|.-.| .+|.|+++|.++..+|.. ...+.+++..|
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-----------~~G~VRLDga~l~qWd~e----~lG~hiGYLPQ 417 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-----------TSGSVRLDGADLRQWDRE----QLGRHIGYLPQ 417 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHccccc-----------CCCcEEecchhhhcCCHH----HhccccCcCcc
Confidence 578888889999999999999999999999999998 899999999888766632 12223444444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHH---------HHHHHcc--c--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILT---------KELEAVG--L--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~---------~~L~~~~--l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. +++|.-+- ++.+.+.+- +++-++- . ....--..||||||||+++|
T Consensus 418 dVeLF~GTIaeNIaRf~----~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 418 DVELFDGTIAENIARFG----EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred cceecCCcHHHHHHhcc----ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence 4444332 22221111 111111222 2222221 1 23334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhccc-CcEEEecCCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd~~~~~~~~ 230 (317)
+++|||-++||.+--..+ +...+.. +++|+++|.+.+-..+|
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 899999999998764444 4444444 49999999988766544
No 384
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=2.2e-17 Score=150.39 Aligned_cols=156 Identities=31% Similarity=0.402 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
..|+|+|++|||||||+|+|+|... .+++.|.||++...|.+..++.++.++||||+...... ...+.......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999875 48999999999998888777789999999998653311 111122334456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|+....... .. .+++.
T Consensus 86 D~il~vvd~~~~~~~~--~~--------------------------------------------~i~~~----------- 108 (292)
T PRK00089 86 DLVLFVVDADEKIGPG--DE--------------------------------------------FILEK----------- 108 (292)
T ss_pred CEEEEEEeCCCCCChh--HH--------------------------------------------HHHHH-----------
Confidence 9999999876521110 00 01111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh---cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+. ..+.+. .+. .+..++++||.++.|+++|.+.+.+.++
T Consensus 109 -----------l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 109 -----------LK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred -----------Hh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 10 0137999999999998 433322 222 2456899999999999999999998874
No 385
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.76 E-value=5.4e-19 Score=189.21 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=103.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+++|+.++|+||||||||||||+|+|....- ..+.+|.|.++|.++..... ..+...++..
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-------~~~~~G~I~~~G~~~~~~~~-----~~r~~i~yv~ 144 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-------HIGVEGVITYDGITPEEIKK-----HYRGDVVYNA 144 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-------CCCceeEEEECCEehHHHHh-----hcCceeEEec
Confidence 36788999999999999999999999999999986210 01278999999976531110 0000111111
Q ss_pred HHHhhh---ccCcEEEEEecC---------CCchhhHHH-HHHHHHHccc--cccc-----cCCcccccceeeeeeE---
Q 021103 132 QVIAVS---KSSDIVLMVLDA---------SKSEGHRQI-LTKELEAVGL--RLNK-----RPPQIYFKKKKTGGIS--- 188 (317)
Q Consensus 132 ~~~~~~---~~~d~i~~v~~~---------~~~~~~~~~-~~~~L~~~~l--~~~~-----~~~~LS~g~~qr~~ia--- 188 (317)
|....+ ...+.+.+.... .......+. ....|+.+|+ ..++ .+..||||||||+.||
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 111011 111111111000 011111122 3557888998 3333 4567999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCC--ChhhHHHH
Q 021103 189 ------FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDA--TVDDLIDV 231 (317)
Q Consensus 189 ------lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~--~~~~~~~~ 231 (317)
+++||||++||......+++.++ . .+ ++|+++|++ .+.+++|.
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 89999999999998666555553 3 24 899999985 34444443
No 386
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.76 E-value=2.3e-19 Score=192.44 Aligned_cols=161 Identities=13% Similarity=0.090 Sum_probs=103.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+++||+|+||||||||+++|+|.+.| .+|.|.+ +|.++.-++...+ +..++++.
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~i~~g~~i~~~~~~~l----r~~Ig~V~ 466 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-----------TEGDIIINDSHNLKDINLKWW----RSKIGVVS 466 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-----------CCCeEEEeCCcchhhCCHHHH----HHhccEec
Confidence 578899999999999999999999999999999988 8999999 4566533221100 11111112
Q ss_pred HHHhhhc--cCcEEEEEe---------------------------------------------------c--CCCchhhH
Q 021103 132 QVIAVSK--SSDIVLMVL---------------------------------------------------D--ASKSEGHR 156 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~---------------------------------------------------~--~~~~~~~~ 156 (317)
|....+. -.+++.+.. + ........
T Consensus 467 Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 467 QDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred ccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 2111110 011111100 0 00001122
Q ss_pred HHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhc---
Q 021103 157 QILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK--- 211 (317)
Q Consensus 157 ~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~--- 211 (317)
+.+.++++.+++ ........|||||+||++|| +++||||++||+.....+.+.+.
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 345566666654 13456789999999999998 99999999999998665555443
Q ss_pred c--cCcEEEecCCCChhhH
Q 021103 212 I--HNAEVLFREDATVDDL 228 (317)
Q Consensus 212 ~--~~~~i~~shd~~~~~~ 228 (317)
. ..|+|+++|+....+.
T Consensus 627 ~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 627 GNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred hcCCCEEEEEeCCHHHHHh
Confidence 2 3499999999654443
No 387
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=2.5e-18 Score=140.09 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.++.....|+++-+|||||||||||+-.|+|..+ -+|.|.++|.++.-..+..+... +.+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------------~sGsi~~~G~~l~~~~~~eLArh--------RAY 76 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------------GSGSIQFAGQPLEAWSATELARH--------RAY 76 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCC------------CCceEEECCcchhHHhHhHHHHH--------HHH
Confidence 4566677799999999999999999999999986 58999999988765443322110 111
Q ss_pred HhhhccCcEEEEE---ecCCCch-hhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------eee
Q 021103 134 IAVSKSSDIVLMV---LDASKSE-GHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNS 191 (317)
Q Consensus 134 ~~~~~~~d~i~~v---~~~~~~~-~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------lil 191 (317)
+..-+..-..+.+ +..+.+. .....+.+....+++ ++.+...+|||||=||+-+| +++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 1111111111111 1112222 123345556666777 77888999999999999888 899
Q ss_pred cCCCCCCCHHH---HHHHHHHhcccC-cEEEecCCC
Q 021103 192 TLPLTHVDEKL---CYQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 192 DEPt~~LD~~~---~~~~l~~l~~~~-~~i~~shd~ 223 (317)
|||.++||... ...++..+...+ ++||.+||.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 99999999864 556777777666 999999994
No 388
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.75 E-value=3.2e-18 Score=153.00 Aligned_cols=86 Identities=35% Similarity=0.638 Sum_probs=78.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccccCCc
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~~~ 127 (317)
+||||.||||||||||+|+|....+++|||||++|..|.+.+.+. ++.++|+||+.+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999988999999999999999998764 489999999998777777
Q ss_pred hhHHHHHhhhccCcEEEEEecCC
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
+.+.+++..++.+|++++++++.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 77788888999999999999864
No 389
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=5.7e-19 Score=188.84 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.+||+||||||||||||+|+|...+ | +.+|.|.++|.+....+ .....++..|
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-----g----~~~G~I~inG~~~~~~~-------~~~~igyv~Q 960 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----G----YIEGDIRISGFPKKQET-------FARISGYCEQ 960 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-----C----cccceEEECCccCChHH-------hhhheEEEcc
Confidence 478889999999999999999999999999998642 1 15799999986542100 0001111111
Q ss_pred HHhhhc---cCcEEEEEe--cC-C--CchhhHHHHHHHHHHccc--cccccC-----CcccccceeeeeeE---------
Q 021103 133 VIAVSK---SSDIVLMVL--DA-S--KSEGHRQILTKELEAVGL--RLNKRP-----PQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~-~--~~~~~~~~~~~~L~~~~l--~~~~~~-----~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+.+.+.. .. . ......+.+.+.++.+++ ..++.+ ..||||||||+.||
T Consensus 961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence 110111 011111100 10 0 111223457888999998 455554 58999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh--hhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATV--DDLIDV 231 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~--~~~~~~ 231 (317)
+++||||+|||......+++.++ ..+ ++|+++|++.. .+.+|.
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE
Confidence 89999999999998666655553 334 99999999763 344443
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=3.8e-18 Score=140.08 Aligned_cols=180 Identities=19% Similarity=0.168 Sum_probs=122.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
..+||..+.|..+|+||.||||||||.++|+|..+| ++|+|.++|.++.+-|-. .....+.+.+|
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~----~R~k~IRMiFQ 94 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYS----FRSKRIRMIFQ 94 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchH----hhhhheeeeec
Confidence 467888888999999999999999999999999998 899999999988765421 01111111111
Q ss_pred HHhh-h----ccCcEEEEEecC---CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAV-S----KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~-~----~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.... + +-..++...+.. ..+....+++.+.|..+|+ ..+-++..||.|||||+++| ++.|
T Consensus 95 Dpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred CCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 1100 0 000111111111 1223345678888999999 67888999999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH
Q 021103 193 LPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 256 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~ 256 (317)
|..++||.....+++..+ + ..| +.|+++.+.-+- .. ....++|+...+.+..+.-
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i---KH------i~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI---KH------ISDQVLVMHEGEVVERGST 234 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh---hh------hcccEEEEecCceeecCCh
Confidence 999999998866665544 3 234 778888764432 12 2456889988887755433
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.6e-18 Score=158.93 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=100.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.++|-+.-..+||||||||+||||||+.|+|.+.| ..|...-+ +.+.+ |++++..
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----------~~GE~RKn-hrL~i----G~FdQh~--------- 659 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----------NDGELRKN-HRLRI----GWFDQHA--------- 659 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcCCCC-----------Ccchhhcc-ceeee----echhhhh---------
Confidence 34444444679999999999999999999999987 78877653 33222 3332211
Q ss_pred Hhhhcc-CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 134 IAVSKS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 134 ~~~~~~-~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
...+.. -..+.++..... ...+.++..|..||+ ...-++..|||||+.|+.+| ||+||||++||.
T Consensus 660 ~E~L~~Eetp~EyLqr~FN--lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQRKFN--LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred HHhhccccCHHHHHHHhcC--CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 111110 001111111111 124567888999999 23346789999999999887 999999999999
Q ss_pred HHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 201 KLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 201 ~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
+++..+-+.++. .+++|++|||..+
T Consensus 738 ESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 738 ESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred hhHHHHHHHHHhccCcEEEEecccce
Confidence 999988888875 4699999999654
No 392
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=3e-18 Score=176.51 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=118.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+..|+.|+|||||||++|+|+|...| ++|.+.+.|..+..- +- .......++.+
T Consensus 582 ~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-----------t~G~a~i~g~~i~~~~~~----~~~~~~iGyCP 646 (885)
T KOG0059|consen 582 RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-----------TSGEALIKGHDITVSTDF----QQVRKQLGYCP 646 (885)
T ss_pred cceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-----------CcceEEEecCccccccch----hhhhhhcccCC
Confidence 578899999999999999999999999999999998 899999988876421 10 00112223323
Q ss_pred HHHhh---hccCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.-.. +..-+.+.+.. .+.......+.+...|+.+++ ..+++.+.+|||+|+|+.+| +++||||
T Consensus 647 Q~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 647 QFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred chhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 32111 11111111111 121222334558889999999 78889999999999999876 8999999
Q ss_pred CCCCHHHH---HHHHHHhcccC-cEEEecCC-CChhhHHHHHh
Q 021103 196 THVDEKLC---YQILHEYKIHN-AEVLFRED-ATVDDLIDVIE 233 (317)
Q Consensus 196 ~~LD~~~~---~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~ 233 (317)
+|+||... ++++..+...+ ++|++||. .+++.+|+++.
T Consensus 727 tGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh
Confidence 99999875 45566666555 99999999 67888888753
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.4e-18 Score=162.17 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh------------cCCCC--CCCCC------------------
Q 021103 4 IEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQL------------LEPPK--GSSGA------------------ 51 (317)
Q Consensus 4 ~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~------------~~~~~--~~~~~------------------ 51 (317)
++..+++|.||.+|+.+.++.. .+.+|++.|.+.- +.++. +..+.
T Consensus 302 ~~~R~h~q~fid~FrYna~ra~---svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~ 378 (582)
T KOG0062|consen 302 MKYRAHLQVFIDKFRYNAARAS---SVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQ 378 (582)
T ss_pred HHHHHHHHHHHHHhccCcccch---hHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchh
Confidence 4567899999999977665544 3446666654320 11111 00000
Q ss_pred -CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchh
Q 021103 52 -GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 -~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~ 129 (317)
...+++..+...+++++|+||+||||+++++.|...| .+|.+.+.+. .+. +..+.
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-----------~rgi~~~~~r~ri~------~f~Qh------ 435 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-----------TRGIVGRHPRLRIK------YFAQH------ 435 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-----------ccceeeecccceec------chhHh------
Confidence 1122333344679999999999999999999998887 6777665432 221 11111
Q ss_pred HHHHHhhhcc-CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 130 GRQVIAVSKS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 130 ~~~~~~~~~~-~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. ...+.++. ...+....+.+++.|+.||+ ........||||||.|+++| |++|||||
T Consensus 436 ---hvd~l~~~v~~vd~~~-~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 436 ---HVDFLDKNVNAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred ---hhhHHHHHhHHHHHHH-HhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 0111100 00011111 11122245678899999999 55666899999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc-ccCcEEEecCCCChhh
Q 021103 197 HVDEKLCYQILHEYK-IHNAEVLFREDATVDD 227 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~-~~~~~i~~shd~~~~~ 227 (317)
+||.+++..+-+.++ ..|++|+||||.++-+
T Consensus 512 hLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 999999999999998 5679999999966443
No 394
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=8.6e-17 Score=133.89 Aligned_cols=158 Identities=27% Similarity=0.391 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhh-hccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAV-SKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~-~~~~d 141 (317)
+++++|++|+|||||+|++++....++++|++|.++..+.+.+++.++.++||||+......... ...+.... ....|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 68999999999999999999988777889999999999998888899999999997532111110 01111111 12357
Q ss_pred EEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
.+++++|...... .......+ +..+.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~--------------------------------------------~~~l~--------- 108 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSL--------------------------------------------FEEIK--------- 108 (168)
T ss_pred cEEEEEeCCcccccchHHHHHH--------------------------------------------HHHHH---------
Confidence 7888888754321 00111111 11110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+....... .+.+ ...++.+||+++.|++++.+.+.+.|
T Consensus 109 -------------~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 109 -------------PLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -------------hhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 000147999999999997654332 2222 24578899999999999999987754
No 395
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=1.1e-18 Score=188.11 Aligned_cols=169 Identities=20% Similarity=0.135 Sum_probs=114.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||+|++|||||||+++|+|... .+|.|.++|.++.-++...+ +..+.+.+|
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------------~~G~I~IdG~di~~i~~~~l----R~~is~IpQ 1299 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------------TEGEIQIDGVSWNSVTLQTW----RKAFGVIPQ 1299 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEcccCCHHHH----HhceEEEeC
Confidence 57889999999999999999999999999999973 47999999998764432211 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cc-------c----ccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-------N----KRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-------~----~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.++|+..++ .. + ..-.+||+||+||+++|
T Consensus 1300 dp~LF~GTIR~NL----dp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1300 KVFIFSGTFRKNL----DPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred CCccCccCHHHHh----Cccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 3222221 1111 1111 1133467777777766 11 1 12247999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+.++-+..
T Consensus 1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~----------~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE----------CQQFLVIEGSSVKQ 1431 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEEE
Confidence 99999999999998666655554 34599999999543322 35678888776553
No 396
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.74 E-value=4.7e-18 Score=149.02 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecC
Q 021103 160 TKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFRE 221 (317)
Q Consensus 160 ~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~sh 221 (317)
.+.|+.+++ ..++++.+||+||+||+.++ +++||||++||+.....+++.+ ...+ ++|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 467888988 36889999999999999876 8999999999999866655544 3334 8999999
Q ss_pred CCChhhHH
Q 021103 222 DATVDDLI 229 (317)
Q Consensus 222 d~~~~~~~ 229 (317)
|.+..+.+
T Consensus 198 ~~~~~~~~ 205 (226)
T cd03270 198 DEDTIRAA 205 (226)
T ss_pred CHHHHHhC
Confidence 97644433
No 397
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=2e-18 Score=145.16 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++|.++|.||||||||+|+|+|...+ ++|.|.++|.++....... ......+++|
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-----------t~G~I~Idg~dVtk~~~~~----RA~~larVfQ 87 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----------TSGQILIDGVDVTKKSVAK----RANLLARVFQ 87 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-----------CCceEEECceecccCCHHH----HhhHHHHHhc
Confidence 456778888999999999999999999999999988 8999999999886543210 0011122222
Q ss_pred HHh--hhcc---CcEEEE-EecCC----Cc---hhhHHHHHHHHHHccc----cccccCCcccccceeeeeeE-------
Q 021103 133 VIA--VSKS---SDIVLM-VLDAS----KS---EGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~-v~~~~----~~---~~~~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia------- 188 (317)
... .+.. .+++.+ ..++. .. .......++.+..+++ .+..+..-|||||+|-+.++
T Consensus 88 dp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p 167 (263)
T COG1101 88 DPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP 167 (263)
T ss_pred chhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC
Confidence 211 0011 111111 11110 11 1123344556676665 78889999999999998766
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCC
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDAT 224 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~ 224 (317)
+++||=|++|||.....+++.-. ..+ +.+||||+.+
T Consensus 168 kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 89999999999998666655432 334 8999999843
No 398
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=9.3e-17 Score=131.56 Aligned_cols=154 Identities=27% Similarity=0.302 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~ 139 (317)
|.+++++|++|||||||+|+|++... .++++|++|.+...+.+.+.+.++.++||||+....... ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 46899999999999999999998764 478899999999999999989899999999985432110 0111233345667
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+......... ..+ .
T Consensus 81 ~~~~v~v~d~~~~~~~~~~--~~~--------------------------------------------~----------- 103 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDL--EIL--------------------------------------------E----------- 103 (157)
T ss_pred CCEEEEEEECCCCCCHHHH--HHH--------------------------------------------H-----------
Confidence 9999999988643221110 000 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+...............+.+||.++.|++.+.+.|.+.+
T Consensus 104 -----------~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 104 -----------L----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -----------h----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 1147999999999998654432222235689999999999999999987754
No 399
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.73 E-value=3e-19 Score=144.20 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=79.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.. ......++..+.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~----~~~~~i~~~~~~ 67 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-----------DSGSILINGKDISDIDIE----ELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-----------SEEEEEETTEEGTTSHHH----HHHHTEEEEESS
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccccc-----------cccccccccccccccccc----cccccccccccc
Confidence 67889999999999999999999999999999987 899999998765320000 000000000000
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
...+.... + ........+.++++.+++ ..+++...||+||+||+.+| +++|||||
T Consensus 68 ~~~~~~~t----v----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 68 PQLFPGLT----V----RENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HCHHTTSB----H----HHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccc----c----ccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 00000000 0 001233457777888776 23444499999999999998 99999996
No 400
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.73 E-value=9.7e-19 Score=150.09 Aligned_cols=154 Identities=10% Similarity=0.002 Sum_probs=92.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+| .++|+||||||||||+++|+|...+..... -+.+..|.+.+.|.++.. + ......++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~---~----~~~~~v~~v-- 81 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKS--LRGEKMSDVIFAGSETRK---P----ANFAEVTLT-- 81 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchh--hcccCHHHHhccCCCCCC---C----CceEEEEEE--
Confidence 5667777778 999999999999999999999875411000 001112233333332110 0 000011111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE-------------eeecCCCCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVD 199 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD 199 (317)
+++.+.. +... ...++.++++. .-..++.+..||+||+||++++ +++||||++||
T Consensus 82 ----fq~~~~~-~~~~------~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 82 ----FDNSDGR-YSII------SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ----EEcCCCc-eeEE------ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 1111111 1000 12345556666 2246778899999999999654 78899999999
Q ss_pred HHHHHHHHHHhc---ccCcEEEecCCCChhhHHH
Q 021103 200 EKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~ 230 (317)
+.....+++.+. ...++|++||+....+.+|
T Consensus 150 ~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d 183 (197)
T cd03278 150 DANVERFARLLKEFSKETQFIVITHRKGTMEAAD 183 (197)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcc
Confidence 998666655543 3358999999976554443
No 401
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.7e-18 Score=158.34 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|..+|||||+|+||||+++.|.+.... .+|.|.++|++|..+....+ +..++.++|
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-----------~sGsI~iDgqdIrnvt~~SL----Rs~IGVVPQ 619 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-----------NSGSITIDGQDIRNVTQSSL----RSSIGVVPQ 619 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-----------cCceEEEcCchHHHHHHHHH----HHhcCcccC
Confidence 688999999999999999999999999999998765 89999999998755432211 112222233
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHH-------ccc------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEA-------VGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~-------~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.--.+. |.+++-.....+....+.+.+.... +++ ....+--.||||||||+++| ++
T Consensus 620 DtvLFN--dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl 697 (790)
T KOG0056|consen 620 DTVLFN--DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL 697 (790)
T ss_pred cceeec--ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE
Confidence 221111 2222222111111111111111111 222 34455668999999999999 89
Q ss_pred ecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 191 STLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 191 lDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+||.||+||... ++..+..+....|.|++.|...- ..+.+.|+|+.+.-++..+.-+++.
T Consensus 698 LDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLST----------ivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 698 LDEATSALDTNTERAIQAALARLCANRTTIVVAHRLST----------IVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred EcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehh----------eecccEEEEEeCCeEeecCcHHHHH
Confidence 999999999765 45556666667788888887321 2346788999988887666555544
No 402
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=1.7e-16 Score=130.50 Aligned_cols=148 Identities=25% Similarity=0.319 Sum_probs=104.5
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccCcEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~d~i~ 144 (317)
|+|++|+|||||+|+++|....++++|++|++...+.+.++|..+.++||||......... ......... ..+|.++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5899999999999999998767889999999999999999999999999999754322111 111122211 5789999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
+++|.......... + .
T Consensus 80 ~v~d~~~~~~~~~~----~--------------------------------------------~---------------- 95 (158)
T cd01879 80 NVVDATNLERNLYL----T--------------------------------------------L---------------- 95 (158)
T ss_pred EEeeCCcchhHHHH----H--------------------------------------------H----------------
Confidence 99987643211100 0 0
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.+. ...+|+++|+||+|+.... +...+.. ...++++||.++.|++++.+.+...+
T Consensus 96 ------~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 96 ------QLL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------HHH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 000 0147999999999997543 2222222 24689999999999999999987754
No 403
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=1.5e-16 Score=152.56 Aligned_cols=155 Identities=25% Similarity=0.258 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d 141 (317)
+|+|+|++|+|||||+|.|+|... .++++||+|++...+.+.++|..+.++||||+...... ......+....++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999875 48899999999999999999999999999998432111 0112233445667899
Q ss_pred EEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++|+....... ..+.++|..
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~------------------------------------------------------- 105 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK------------------------------------------------------- 105 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------------------------------------------------------
Confidence 999999986532211 111111111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
..+|+++|+||+|....+. ...+.+ ..+++++||++|.|++++.+.+.+.+..
T Consensus 106 ----------------~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 106 ----------------SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred ----------------hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1479999999999875432 223333 3468999999999999999999888754
No 404
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=1.6e-16 Score=160.56 Aligned_cols=153 Identities=23% Similarity=0.321 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHH---HHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQ---VIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~---~~~~~ 137 (317)
.+++|+|.||||||||+|+|+|....++++||+|++...|.+.+++.++.++||||.++-..... ....+ .....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 47999999999999999999999888999999999999999999999999999999875322110 11111 11123
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.+........ ..+
T Consensus 84 ~~aD~vI~VvDat~ler~l~l~-~ql------------------------------------------------------ 108 (772)
T PRK09554 84 GDADLLINVVDASNLERNLYLT-LQL------------------------------------------------------ 108 (772)
T ss_pred cCCCEEEEEecCCcchhhHHHH-HHH------------------------------------------------------
Confidence 4689999999986532211100 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+.... +.+.+.+ ..+++++||.++.|++++.+.+.+..
T Consensus 109 ---------------~--e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 109 ---------------L--ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------------H--HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0 1147999999999987432 2333333 24689999999999999999998765
No 405
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=3.4e-16 Score=151.50 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=111.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHH--HHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQ--VIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~--~~~~ 136 (317)
..+++|+|++|||||||+|+|+|... .++++|+||+++....+.++|.++.++||||+........+ .... ....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 46899999999999999999999875 48899999999999999999999999999998653322111 1111 1234
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... ..+ .
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~--~~~--------------------------------------------~-------- 316 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ--RVL--------------------------------------------S-------- 316 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH--HHH--------------------------------------------H--------
Confidence 5789999999998654221110 000 0
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HH-H----Hh--cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VD-K----LA--RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~-~----l~--~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+. ...+|+++|+||+|+...+. .. . +. .+.+++++||++|.|++++.+.+.+.
T Consensus 317 --------------~~~--~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 317 --------------MVI--EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred --------------HHH--HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 12479999999999975321 11 1 11 23568999999999999999999776
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 381 ~~ 382 (472)
T PRK03003 381 LE 382 (472)
T ss_pred HH
Confidence 53
No 406
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=2.5e-16 Score=129.12 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=105.8
Q ss_pred EEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccCcEE
Q 021103 66 ALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 66 aliG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~i 143 (317)
+++|.+|+|||||+|.|++... .++++|++|++.....+.+++..+.++||||+....... ..........+..+|.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998763 478899999999999999999999999999986532200 00112233456779999
Q ss_pred EEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 144 LMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 144 ~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++........ ..+..++ .
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~--------------------------------------------~-------------- 102 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYL--------------------------------------------R-------------- 102 (157)
T ss_pred EEEEeccccCCccHHHHHHHH--------------------------------------------H--------------
Confidence 9999875432111 0111111 0
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChhhH-HHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~-~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
....|+++|+||+|+...... ..+.+ ...++++|++++.|++++.+.|.+.
T Consensus 103 -------------~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 103 -------------KSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -------------hcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 113799999999999865433 22222 2367999999999999999998764
No 407
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.71 E-value=3.6e-16 Score=149.34 Aligned_cols=92 Identities=33% Similarity=0.374 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSK 138 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~ 138 (317)
++.+++|+|++|||||||+|.|++... .++++|+||++...+.+.++|.++.++||||+.......... .......++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 467999999999999999999999864 589999999999999999999999999999986422110000 112334567
Q ss_pred cCcEEEEEecCCCc
Q 021103 139 SSDIVLMVLDASKS 152 (317)
Q Consensus 139 ~~d~i~~v~~~~~~ 152 (317)
.+|++++++|...+
T Consensus 282 ~aD~il~V~D~s~~ 295 (442)
T TIGR00450 282 QADLVIYVLDASQP 295 (442)
T ss_pred hCCEEEEEEECCCC
Confidence 89999999998654
No 408
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=5.8e-16 Score=156.64 Aligned_cols=156 Identities=22% Similarity=0.228 Sum_probs=114.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~ 138 (317)
-..|+|+|++|+|||||+|.|+|... .++++||+|++...+...+++..+.++||||+.... ... ....+....+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHH
Confidence 46799999999999999999999765 478999999999999999999999999999975321 111 12334445567
Q ss_pred cCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 139 SSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
.+|++++++|+....... ..+.+.|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~L------------------------------------------------------ 379 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRML------------------------------------------------------ 379 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH------------------------------------------------------
Confidence 899999999986432111 1111111
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH-HHH--hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~-~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ...+|+++|+||+|+...... ... ......+++||++|.|+++|.+.|.+.+..
T Consensus 380 ---------------r--~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 380 ---------------R--RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ---------------H--hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1 125899999999998653221 222 224467899999999999999999887743
No 409
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=2.3e-17 Score=178.48 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.|.++| .+.++.. |.+..
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g-~i~yv~Q~~~l~~---------- 712 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVHMKG-SVAYVPQQAWIQN---------- 712 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-----------CCcEEEECC-EEEEEcCCccccC----------
Confidence 578899999999999999999999999999999988 889999987 3433321 11110
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHH---HHHHccc-------cccccCCcccccceeeeeeE---------eeec
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTK---ELEAVGL-------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~---~L~~~~l-------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
..-.|++.+... ... ...+.+.+ +.+.++. ....+..+||||||||+++| +++|
T Consensus 713 -----~Ti~eNI~~g~~-~~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 713 -----DSLRENILFGKA-LNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred -----CcHHHHhhcCCc-cCH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 001122222111 111 11111111 1111111 24567789999999999999 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc------ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~------~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+. ...++|++||+......+ ..++++++.-+.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~----------D~ii~l~~G~i~ 840 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV----------DVIIVMSGGKIS 840 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC----------CEEEEecCCeEE
Confidence 9999999999877776653 234999999997654433 346666655443
No 410
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.70 E-value=3.4e-17 Score=176.75 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=98.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|||||||||||++|+|...+ .+|.|.++|. +.++. .|.+...
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-----------~~G~i~~~g~-iayv~Q~~~l~~~--------- 501 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-----------SEGKIKHSGR-ISFSPQTSWIMPG--------- 501 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCE-EEEEeCCCccCCc---------
Confidence 578899999999999999999999999999999988 8899999873 43332 2222110
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHH-----HHHHHHHHccc----cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
...|++.+... .......+ .+.+.++.+.. ....+...||||||||+++| +++||
T Consensus 502 ------Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 502 ------TIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred ------cHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00111211111 00000000 12222333321 24556789999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhh
Q 021103 194 PLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~ 227 (317)
||++||......+++. +....|+|++||+.....
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK 612 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 9999999987776653 223459999999976544
No 411
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.69 E-value=5.2e-16 Score=138.32 Aligned_cols=227 Identities=21% Similarity=0.320 Sum_probs=143.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
.-.+||||.||+|||||||+|+......+||||||.||..+.+.+.+ ..++++|.+|+.+.++
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 35899999999999999999999988899999999999999986642 2578899999999999
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccceeeeeeEeee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ialil 191 (317)
.+.+.+..+++.++.+|.+.+++++.. +..+.+.+.+.|....+ .+.++...++...+.-
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~------- 172 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRT------- 172 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcc-------
Confidence 999999999999999999999987642 33344445555444333 2333333333222210
Q ss_pred cCCCCCCCHHH-------HHHHHHHhcccCcEEEecCCCChhhH--HHHHhcccceeeeeEEEecccCCC----hhhHHH
Q 021103 192 TLPLTHVDEKL-------CYQILHEYKIHNAEVLFREDATVDDL--IDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 258 (317)
Q Consensus 192 DEPt~~LD~~~-------~~~~l~~l~~~~~~i~~shd~~~~~~--~~~~~~~~~~~p~i~v~NK~D~~~----~~~~~~ 258 (317)
-+++|... ...+.+.+-.....+.-.|+++-+++ +.... --..+|+++++|+.|-.- +.++..
T Consensus 173 ---~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~-lLt~kP~Vyl~N~se~dy~r~knk~l~~ 248 (391)
T KOG1491|consen 173 ---KSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLF-LLTAKPTVYLLNLSEHDYARKKNKKLPK 248 (391)
T ss_pred ---cCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhh-hhhcCceEEEEecCcchhhhHHHHHHhh
Confidence 01122111 12222222112222333455443332 22111 123689999999996542 122333
Q ss_pred HhcC-------CCeEEEecccc---------------------ccHHHHHHHHHHHhCeeEEEecCCCC
Q 021103 259 LARQ-------PNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQ 299 (317)
Q Consensus 259 l~~~-------~~~v~iSa~~~---------------------~~i~~l~~~i~~~l~~~~~~~~~~~~ 299 (317)
+..+ ..++++|+.-. ..+.++...-++.|+.+.+||.-+.+
T Consensus 249 i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~e 317 (391)
T KOG1491|consen 249 IKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGEDE 317 (391)
T ss_pred hhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCch
Confidence 3222 23555555432 26777778888999999999965443
No 412
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=4.8e-16 Score=150.43 Aligned_cols=155 Identities=22% Similarity=0.229 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~ 139 (317)
.+|+|+|++|||||||+|.|+|... .+++.||+|++...+.+.++|..+.++||||+..... .. ....+....+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK-GLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch-hHHHHHHHHHHHHHHh
Confidence 5799999999999999999999764 4789999999999999999999999999999753211 11 112233345678
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+...+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l------------------------------------------------------- 142 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVL------------------------------------------------------- 142 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999998653211 11111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ...+|+++|+||+|+...+ ...... .....+++||.+|.|+++|.+.|.+.+..
T Consensus 143 --------------~--~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 143 --------------R--RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred --------------H--HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 0 1247999999999986432 122222 23457899999999999999999887643
No 413
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.2e-15 Score=146.42 Aligned_cols=156 Identities=26% Similarity=0.307 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~ 136 (317)
..+++|+|++|+|||||+|+|+|... .++++|+||++.....+.++|..+.++||||+.......... .......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 56899999999999999999999875 488999999999988888899999999999986543222111 1123345
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... . ++..
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~--~--------------------------------------------i~~~------- 279 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDL--R--------------------------------------------IAGL------- 279 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHH--H--------------------------------------------HHHH-------
Confidence 6789999999998654221110 0 0000
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ...+|+++|+||+|+...+..+ .+. .+.+++++||+++.|++++.+.+.+.
T Consensus 280 ---------------~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 280 ---------------AL--EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred ---------------HH--HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 00 1147999999999998543322 111 23578999999999999999988664
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 343 ~ 343 (435)
T PRK00093 343 Y 343 (435)
T ss_pred H
Confidence 4
No 414
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=3.3e-17 Score=177.08 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=102.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE-EECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII-HYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i-~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+.++|+|++|||||||+++|+|...+ .+|.+ .+.+ .+.++.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~G~i~~~~~-~Iayv~---------------- 685 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRG-SVAYVP---------------- 685 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-----------cCCCEEEecC-cEEEEc----------------
Confidence 578899999999999999999999999999999987 55543 2222 233321
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+. -.|++.+... .+.++..+.++..++ .....-.+||||||||++||
T Consensus 686 Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 686 QVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred CccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 1111111 1233333211 122334444444443 22334457999999999999
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||......+++.+ . ...|+|++||+...-.. ...|++++..-+..
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~----------aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL----------MDRIILVSEGMIKE 819 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh----------CCEEEEEeCCEEEE
Confidence 9999999999998876665542 2 34599999999654433 34567776655443
No 415
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=7.6e-16 Score=147.86 Aligned_cols=154 Identities=25% Similarity=0.265 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||+|.|+|... .++++|++|++...+.+.++|..+.++||||+........ ....+....+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999875 4889999999999999999999999999999865211000 1122334456789
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|++++++|+....... ..+..+|..
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~------------------------------------------------------ 107 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK------------------------------------------------------ 107 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH------------------------------------------------------
Confidence 9999999986532211 111111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
...|+++|+||+|....+ ....+.. ...++++||.+|.|++++.+.|.+..
T Consensus 108 -----------------~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 108 -----------------SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred -----------------cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 147999999999976422 2223332 34589999999999999999998743
No 416
>PLN03130 ABC transporter C family member; Provisional
Probab=99.68 E-value=4.5e-17 Score=176.40 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee-EEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~-G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+++|+.++|+|++|||||||+++|+|...+ .+ |.|.+.+ .+.++.- |-+...
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~GG~I~l~~-~Iayv~Q~p~Lfng-------- 693 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRG-TVAYVPQVSWIFNA-------- 693 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-----------CCCceEEEcC-eEEEEcCccccCCC--------
Confidence 578899999999999999999999999999999988 78 8888754 3333321 111110
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.-.|++.+... .+.++..+.++..++ ....+-.+||||||||+++|
T Consensus 694 -------TIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 694 -------TVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred -------CHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 11233333211 122344444444443 22344567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||....+.+++. +....|+|++||+...-.. ...|+++.+.-+..
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~----------aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ----------VDRIILVHEGMIKE 819 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh----------CCEEEEEeCCEEEE
Confidence 999999999999876665543 2234599999999754433 34567776665543
No 417
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=9.3e-16 Score=155.16 Aligned_cols=157 Identities=25% Similarity=0.300 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHH--HHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGR--QVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~--~~~~~ 136 (317)
..+++|+|++|||||||+|+|++... .++++|+||+++....+.++|.++.++||||+.+......+ ... .....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 36899999999999999999999875 47899999999999999999999999999998654332211 111 11234
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... ..+ .
T Consensus 530 i~~advvilViDat~~~s~~~~--~i~--------------------------------------------~-------- 555 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDL--KVM--------------------------------------------S-------- 555 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHH--HHH--------------------------------------------H--------
Confidence 6789999999998654221110 000 0
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHH-Hh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDK-LA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~-l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+. ...+|+++|+||+|+...+. ++. +. .+.+++++||++|.|+++|.+.+.+.
T Consensus 556 --------------~~~--~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 556 --------------MAV--DAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred --------------HHH--HcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 12479999999999986432 221 11 23467899999999999999998776
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 620 ~~ 621 (712)
T PRK09518 620 LE 621 (712)
T ss_pred HH
Confidence 54
No 418
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.3e-17 Score=151.66 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=93.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
+....|.++||+|+||+||||||++|+..... .. +++ ..+.-.||+.+.+....+..+ ..++
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~--~f------~ve-------qE~~g~~t~~~~~~l~~D~~~-~dfl-- 162 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIANGQVS--GF------HVE-------QEVRGDDTEALQSVLESDTER-LDFL-- 162 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHhcCcC--cc------Cch-------hheeccchHHHhhhhhccHHH-HHHH--
Confidence 44556899999999999999999999973211 00 010 011112222221111111100 0000
Q ss_pred hccCcEEEEEecCCCchhhHHHHHH-HHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTK-ELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~-~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
.++..+. ... ..+.+.. .|.-+|| +..++..+||||.|.|+++| |++|||||+||..++
T Consensus 163 ~~e~~l~-------~~~-~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av 234 (582)
T KOG0062|consen 163 AEEKELL-------AGL-TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV 234 (582)
T ss_pred Hhhhhhh-------ccc-hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHH
Confidence 0000000 000 1122333 8888999 67788999999999999998 899999999999988
Q ss_pred HHHHHHhcc-cCcEEEecCC-CChhhHHHHHhc
Q 021103 204 YQILHEYKI-HNAEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 204 ~~~l~~l~~-~~~~i~~shd-~~~~~~~~~~~~ 234 (317)
.-+-.-+.. ..|+++|||| ..++.+|..+..
T Consensus 235 ~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH 267 (582)
T KOG0062|consen 235 AWLENYLQTWKITSLIVSHDRNFLNTVCTDIIH 267 (582)
T ss_pred HHHHHHHhhCCceEEEEeccHHHHHHHHHHHHH
Confidence 777666664 3599999999 556677765543
No 419
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=7.3e-17 Score=159.93 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=108.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEE---ecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQL---LDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~---~d~~g~~~~~~~~~~ 128 (317)
.+++...++|+..||+||+|||||||+|+|+|.... .. .+|.|.++|++... -...|+..+...-.+
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~---------~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~ 117 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLK---------LSGEILLNGRPRDSRSFRKISGYVQQDDVLLP 117 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCc---------ceEEEEECCccCchhhhhheeEEEcccccccc
Confidence 578889999999999999999999999999999864 12 78999999954211 011122221111000
Q ss_pred --hHHHHHhhhccCcEEEEEecC-CCchhhHHHHHHHHHHccc--cccccCC-----cccccceeeeeeE---------e
Q 021103 129 --RGRQVIAVSKSSDIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPP-----QIYFKKKKTGGIS---------F 189 (317)
Q Consensus 129 --~~~~~~~~~~~~d~i~~v~~~-~~~~~~~~~~~~~L~~~~l--~~~~~~~-----~LS~g~~qr~~ia---------l 189 (317)
-+.+.+..... +-+.. ....+...++++.+..+|+ ..+..++ .+||||++|+.+| +
T Consensus 118 ~LTV~EtL~f~A~-----lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iL 192 (613)
T KOG0061|consen 118 TLTVRETLRFSAL-----LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSIL 192 (613)
T ss_pred cccHHHHHHHHHH-----hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEE
Confidence 01111110000 00111 1223456678999999999 4666665 5999999999999 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh--hhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV--DDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~--~~~~~~ 231 (317)
++||||+|||......+++.+ ...| ++|++=|-+.. -++.|.
T Consensus 193 flDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 193 FLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred EecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhH
Confidence 999999999998866655555 3445 88888898543 344444
No 420
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=9.8e-17 Score=173.51 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=104.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.|.+.+ .+.++. .|.+.. +-.
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-----------~~G~i~~~~-~i~yv~Q~~~l~~------~Tv- 737 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-----------SEGRVWAER-SIAYVPQQAWIMN------ATV- 737 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECC-eEEEEeCCCccCC------CcH-
Confidence 477889999999999999999999999999999988 789988753 344332 111110 001
Q ss_pred HHHhhhccCcEEEEEecCCCchh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.+++.+... ..... ....+.+.++.+ |+ ....+..+||||||||+++| +++||
T Consensus 738 --------~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 738 --------RGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred --------HHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111100 00000 001123334444 44 45778899999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh----cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l----~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+++.+ ....++|++||+......+ ..++++++..+.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a----------d~ii~l~~G~i~ 860 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA----------DYVVALGDGRVE 860 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 99999998766665532 1234999999997654433 446666655443
No 421
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=1.9e-15 Score=144.79 Aligned_cols=155 Identities=27% Similarity=0.278 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh--HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR--GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~--~~~~~~~~ 137 (317)
.+++++|.+|+|||||+|+|+|... .++++|+||+++....+.++|..+.++||||+.+..... ... ..+....+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 5799999999999999999999865 478999999999999999999999999999986543221 111 11223456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
+.+|++++++|+......... .+ +..
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~--~~--------------------------------------------~~~-------- 278 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDL--RI--------------------------------------------AGL-------- 278 (429)
T ss_pred HhCCEEEEEEECCCCccHHHH--HH--------------------------------------------HHH--------
Confidence 789999999998654221110 00 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|+++|+||+|+. ..+..+ .+. .+.+++++||++|+|++++.+.+.+.
T Consensus 279 --------------~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 279 --------------IL--EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred --------------HH--HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 00 1147999999999998 333222 111 23578999999999999999988765
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 343 ~ 343 (429)
T TIGR03594 343 Y 343 (429)
T ss_pred H
Confidence 4
No 422
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=8.6e-16 Score=120.45 Aligned_cols=88 Identities=40% Similarity=0.596 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~-~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 140 (317)
+|+|+|++|||||||+|+|+|.. ..+++++++|+.+..+.+.+++..+.++||||+.+...... ....+....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999974 45899999999999999999999999999999976433221 1233455566789
Q ss_pred cEEEEEecCCC
Q 021103 141 DIVLMVLDASK 151 (317)
Q Consensus 141 d~i~~v~~~~~ 151 (317)
|++++++++..
T Consensus 81 d~ii~vv~~~~ 91 (116)
T PF01926_consen 81 DLIIYVVDASN 91 (116)
T ss_dssp SEEEEEEETTS
T ss_pred CEEEEEEECCC
Confidence 99999999654
No 423
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=4.8e-15 Score=122.06 Aligned_cols=154 Identities=32% Similarity=0.412 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.++|.... +++.+.+|.....+.....+..+.++||||+......... ........+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999998643 6677888888888877777788999999998643221111 111223345678
Q ss_pred cEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.++++++....... ...+.+.+
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~-------------------------------------------------------- 107 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELL-------------------------------------------------------- 107 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHH--------------------------------------------------------
Confidence 999999887654111 11111100
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|.++|+||+|+. ..+... .+.. ..+++.+|+.++.+++++.+.|.+.+
T Consensus 108 -------------~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 108 -------------K--KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred -------------H--HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0 0136899999999998 333322 2222 24678999999999999999987653
No 424
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=5.6e-15 Score=122.02 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.++++|++|||||||+|+|+|.... ....+++|.+.....+.+. +..+.++||||.... .......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhhhc
Confidence 5899999999999999999985421 2235688988888888886 788999999996321 1223345668
Q ss_pred CcEEEEEecCCC
Q 021103 140 SDIVLMVLDASK 151 (317)
Q Consensus 140 ~d~i~~v~~~~~ 151 (317)
+|.+++++|...
T Consensus 75 ad~ii~V~d~~~ 86 (164)
T cd04171 75 IDLVLLVVAADE 86 (164)
T ss_pred CCEEEEEEECCC
Confidence 999999999754
No 425
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.8e-15 Score=124.94 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
...-||++|++|+|||||+|+|+|.. ..+|..||.|+.+.- ..+++ .+.++|.|||-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~-~~~lVDlPGYG 81 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD-ELRLVDLPGYG 81 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecC-cEEEEeCCCcc
Confidence 35689999999999999999999977 569999999999863 33433 37789999973
No 426
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.64 E-value=9.6e-15 Score=121.37 Aligned_cols=154 Identities=27% Similarity=0.317 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~~ 137 (317)
.+++++|.+|+|||||+|+|++... ...++|++|++...+.+..++.++.++||||+.......... ..+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 4799999999999999999998764 467899999999888888999999999999986432111111 11223345
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|.+++++|...+..... ..++ ..
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~--~~~~--------------------------------------------~~-------- 108 (174)
T cd01895 83 ERADVVLLVIDATEGITEQD--LRIA--------------------------------------------GL-------- 108 (174)
T ss_pred hhcCeEEEEEeCCCCcchhH--HHHH--------------------------------------------HH--------
Confidence 67899999998765422110 0000 00
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCCh--hhHH----HHhc------CCCeEEEeccccccHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD----KLAR------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~~----~l~~------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
+. ....|+++|+||+|+... ...+ .+.+ ....+++||+++.|++++.+.+..
T Consensus 109 --------------~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 109 --------------IL--EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------HH--hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 00 014799999999999755 2222 2221 246889999999999999998865
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 173 ~ 173 (174)
T cd01895 173 V 173 (174)
T ss_pred h
Confidence 4
No 427
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.64 E-value=9.4e-15 Score=134.90 Aligned_cols=88 Identities=34% Similarity=0.540 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCe-----------------eEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~ 124 (317)
..+||||.||+|||||||+|++... ++++|||||.+|..|.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4789999999999999999999998 8999999999999999998762 578999999999888
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCC
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+.+.+.+++..++.+|.++++++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 88888889999999999999999864
No 428
>PRK04213 GTP-binding protein; Provisional
Probab=99.63 E-value=6.6e-15 Score=126.54 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 119 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~ 119 (317)
..+|+++|++|||||||+|.|+|....++.+|++|+++.. +.++ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 4589999999999999999999988778889999998753 3343 6889999996
No 429
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.63 E-value=5.4e-16 Score=137.34 Aligned_cols=190 Identities=23% Similarity=0.212 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-
Q 021103 28 GQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY- 106 (317)
Q Consensus 28 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~- 106 (317)
..++.+..++++++...++++.. . ......+...|++||++|||||||+|+|++.-..-.+.-|.|+||+.-...+
T Consensus 147 rllr~kea~lrKeL~~vrrkr~~-r--~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKRQR-R--VGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-h--hccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC
Confidence 33566677777776655544310 0 1112233568999999999999999999977655678899999998766655
Q ss_pred CCeeEEEecCCCccccccCCchh-HHHHHhhhccCcEEEEEecCCCchhhHH--HHHHHHHHccccccccCCccccccee
Q 021103 107 NDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSDIVLMVLDASKSEGHRQ--ILTKELEAVGLRLNKRPPQIYFKKKK 183 (317)
Q Consensus 107 ~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d~i~~v~~~~~~~~~~~--~~~~~L~~~~l~~~~~~~~LS~g~~q 183 (317)
.|..+.+.||.||+++.+...-. +...+.....+|++++++|.+.+....+ .+...|..+|..
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~-------------- 289 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVP-------------- 289 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCC--------------
Confidence 47778899999998876554322 3345566778999999999988765332 333334333320
Q ss_pred eeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 184 r~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
++|. + .-++=|-||+|.....-- .+..
T Consensus 290 --------~~pk-----------------------------l-------------~~mieVdnkiD~e~~~~e---~E~n 316 (410)
T KOG0410|consen 290 --------SEPK-----------------------------L-------------QNMIEVDNKIDYEEDEVE---EEKN 316 (410)
T ss_pred --------cHHH-----------------------------H-------------hHHHhhccccccccccCc---cccC
Confidence 0000 0 112335699987643210 1223
Q ss_pred CeEEEeccccccHHHHHHHHHHHh
Q 021103 264 NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 264 ~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+.+++||.+|.|++++++.+.+.+
T Consensus 317 ~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 317 LDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred CccccccccCccHHHHHHHHHHHh
Confidence 489999999999999999987654
No 430
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=4.5e-15 Score=146.70 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=104.3
Q ss_pred cCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccCcEEEEEe
Q 021103 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVL 147 (317)
Q Consensus 69 G~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d~i~~v~ 147 (317)
|.+|+|||||+|.++|....++++|++|++...|.+.++|.++.++||||..+...... ............+|++++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999878999999999999999999999999999999865332211 11111111234689999999
Q ss_pred cCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhh
Q 021103 148 DASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD 227 (317)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~ 227 (317)
|+.+......... +
T Consensus 81 Dat~ler~l~l~~--------------------------------------------q---------------------- 94 (591)
T TIGR00437 81 DASNLERNLYLTL--------------------------------------------Q---------------------- 94 (591)
T ss_pred cCCcchhhHHHHH--------------------------------------------H----------------------
Confidence 8764321111000 0
Q ss_pred HHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 228 LIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 228 ~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||++|.|++++.+.+.+..
T Consensus 95 ----l~--~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 ----LL--ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ----HH--hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 00 1147999999999986322 2233332 24689999999999999999997753
No 431
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.63 E-value=9.8e-15 Score=121.33 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC----CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA----ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v----~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.++++|++|||||||++.|++...+. ...+.+|+....+.+.+++..+.++|+||..... ......+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCC
Confidence 37899999999999999998865431 2234667777788899999999999999964211 112335678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ......++.. +++..
T Consensus 74 ~~~~v~vvd~~~~~~-~~~~~~~~~~----------------------------------------~~~~~--------- 103 (167)
T cd04160 74 CHAIIYVIDSTDRER-FEESKSALEK----------------------------------------VLRNE--------- 103 (167)
T ss_pred CCEEEEEEECchHHH-HHHHHHHHHH----------------------------------------HHhCh---------
Confidence 999999998764321 1111111111 00000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc---------CCCeEEEeccccccHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR---------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~---------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....|+++|+||+|+.... +.....+ ...++.+||++|.|++++.+.|.+
T Consensus 104 ---------------~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 104 ---------------ALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ---------------hhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 01247999999999986542 2222111 124888999999999999988754
No 432
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=2.5e-16 Score=140.35 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccccc----------------------cccCCcccccceeeeeeE-------------eeecCCCCCCCH
Q 021103 156 RQILTKELEAVGLRL----------------------NKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDE 200 (317)
Q Consensus 156 ~~~~~~~L~~~~l~~----------------------~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~ 200 (317)
...+.++|+.+++.. +.++..||+||+||++++ +++||||++||+
T Consensus 124 ~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~ 203 (251)
T cd03273 124 QQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203 (251)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCH
Confidence 356777888888731 367899999999998775 789999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCChhhHHHHH
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATVDDLIDVI 232 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~ 232 (317)
.....+++.+. ...++|++||+.++.+.+|.+
T Consensus 204 ~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 204 SHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEE
Confidence 88766665554 333799999997666655543
No 433
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=6.4e-16 Score=161.19 Aligned_cols=183 Identities=17% Similarity=0.125 Sum_probs=123.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.+...+ ..|.|.+||.++.-+ |+.+ .+......+|
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-----------~~G~I~IDgvdI~~i---gL~d-LRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-----------AEGEILIDGVDISKI---GLHD-LRSRLSIIPQ 1221 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-----------cCCeEEEcCeecccc---cHHH-HHhcCeeeCC
Confidence 788999999999999999999999999999999887 899999999987544 4322 1222222222
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--c-------cc----ccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-------LN----KRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-------~~----~~~~~LS~g~~qr~~ia---------li 190 (317)
..-.+.. -+-+-+|..+. ...+.+.++|+..++ . ++ .--.++|-||||.+++| ++
T Consensus 1222 dPvLFsG--TvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1222 DPVLFSG--TVRFNLDPFDE-YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred CCceecC--ccccccCcccc-cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence 2211111 01111232221 233456777777665 1 22 22368999999999998 99
Q ss_pred ecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCC-ChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCC
Q 021103 191 STLPLTHVDEKL---CYQILHEYKIHNAEVLFREDA-TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPN 264 (317)
Q Consensus 191 lDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~-~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~ 264 (317)
+||.|++.|+++ +++.+++-=...|++.+.|.. ++- ....|+|+.++.+..-+....+....+
T Consensus 1299 LDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-----------d~DrVlVld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1299 LDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-----------DSDRVLVLDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred EecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-----------hcCeEEEeeCCeEeecCChHHHHhCCc
Confidence 999999999987 444444433456999999983 332 256799999988775555555554433
No 434
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.61 E-value=4.7e-14 Score=116.39 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+.+.....+..|++|.+.....+.+++. .+.++|+||-... .......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhccCC
Confidence 6899999999999999999998776778899999998888888875 4778999984211 111233467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
+++++.+...+.. ...+..++..+ ..
T Consensus 75 ~ii~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------- 100 (161)
T cd01861 75 VAVVVYDITNRQS-FDNTDKWIDDV----------------------------------------RD------------- 100 (161)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHHH----------------------------------------HH-------------
Confidence 9999998764322 11122222110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||.++.|++++.+.|.+.+
T Consensus 101 ---------~---~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 101 ---------E---RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ---------h---CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0 0114799999999999432 22222222 24578899999999999999997753
No 435
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=128.21 Aligned_cols=89 Identities=31% Similarity=0.412 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-----hHHHHHhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-----RGRQVIAV 136 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-----~~~~~~~~ 136 (317)
-.||+||+||+|||||.|.+.|... +++..+.||+....|.+.-+..++.++||||+......... ........
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 4799999999999999999999875 69999999999999999999999999999999764332211 11223346
Q ss_pred hccCcEEEEEecCCC
Q 021103 137 SKSSDIVLMVLDASK 151 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~ 151 (317)
++.+|+++.+.|+..
T Consensus 153 ~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 153 AQNADCVVVVVDASA 167 (379)
T ss_pred HhhCCEEEEEEeccC
Confidence 678999999999874
No 436
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.61 E-value=6.6e-16 Score=137.51 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHhc---c-cCcEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l~---~-~~~~i~ 218 (317)
...+.|+.+|+ .+++++.+||+||+||+.+| +++||||++||+.....+++.+. . ..++|+
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45667888888 36889999999999999876 89999999999998665555443 3 349999
Q ss_pred ecCCCChhhHHH
Q 021103 219 FREDATVDDLID 230 (317)
Q Consensus 219 ~shd~~~~~~~~ 230 (317)
++|+.+..+.+|
T Consensus 228 itH~~~~i~~aD 239 (261)
T cd03271 228 IEHNLDVIKCAD 239 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999976554443
No 437
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=2.9e-15 Score=156.39 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+||+|+.|||||||+.+|+|+... .+|.+.++|. +.++. |
T Consensus 538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-----------~sG~v~v~gs-iaYv~----------------Q 589 (1381)
T KOG0054|consen 538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-----------LSGSVAVNGS-VAYVP----------------Q 589 (1381)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-----------ccceEEEcCe-EEEec----------------c
Confidence 578899999999999999999999999999999988 8999999886 33332 2
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ .-.|+|+|... .++++.++.++...+ ....+--+||||||||+.+|
T Consensus 590 ~pWI~ngTvreNILFG~~-----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSP-----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred ccHhhCCcHHHhhhcCcc-----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 11111 12355555432 223344444444433 34456679999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHh----cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l----~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++|-|++++|...-+.+.+.. -...|+|++||...+-. ....|+|+..+-+...+..+++.
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~----------~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP----------HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh----------hCCEEEEecCCeEecccCHHHHH
Confidence 9999999999998865555543 34569999999644332 34668888887776665554443
No 438
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=3.9e-14 Score=115.29 Aligned_cols=150 Identities=25% Similarity=0.306 Sum_probs=106.0
Q ss_pred EEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhccCcEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~ 144 (317)
|+|++|||||||+|.|++.... .++.+++|.+.....+.+. +..+.++|+||+.................+..+|.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999998765 7888999999988877776 6789999999986544332221223344667899999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
++++........... +...
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~----------------------------------------------------------- 99 (163)
T cd00880 81 FVVDADLRADEEEEK--LLEL----------------------------------------------------------- 99 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHH-----------------------------------------------------------
Confidence 999876543221110 0000
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChhhHHHH----------hcCCCeEEEeccccccHHHHHHHHHHH
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----------ARQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l----------~~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ....|.++|+||+|+......... ....+++++||.++.|++++.+.+.+.
T Consensus 100 -------~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 100 -------LR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -------HH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 00 124789999999999875433221 123568889999999999999988764
No 439
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=3.7e-14 Score=121.09 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--h----hHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--G----RGRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~----~~~~~ 133 (317)
..+|+|+|.+|||||||+|.|++.. ..+++.+++|+.+.... + +.++.++||||+........ . .....
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 4689999999999999999999963 45788899998875433 2 46789999999743211100 0 01111
Q ss_pred HhhhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
+......+.++++++...+.... ..+.+++.
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~------------------------------------------------ 132 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLK------------------------------------------------ 132 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHH------------------------------------------------
Confidence 11222335566666544321111 01111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH----H---hc--CCCeEEEeccccccHHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----L---AR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~----l---~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
....|+++|+||+|+...++.+. + .. ...++++||+++.|++++.+.|
T Consensus 133 -----------------------~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 133 -----------------------EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAI 189 (196)
T ss_pred -----------------------HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHH
Confidence 11468899999999986543221 1 11 3578999999999999999999
Q ss_pred HHHhC
Q 021103 284 WEEMG 288 (317)
Q Consensus 284 ~~~l~ 288 (317)
.+.+.
T Consensus 190 ~~~~~ 194 (196)
T PRK00454 190 AKWLA 194 (196)
T ss_pred HHHhc
Confidence 87763
No 440
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=6.9e-16 Score=145.05 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=103.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc---cccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI---IEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~---~~~~~~~~~~ 129 (317)
.+..++...|+++||+|+|||||||+|++|.|...|+.. ..+ ++.-...+.--+.-.+ .........+
T Consensus 92 kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~--------~~d-~y~ls~e~~ps~~~av~~v~~~~~~e~~r 162 (614)
T KOG0927|consen 92 KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE--------HID-FYLLSREIEPSEKQAVQAVVMETDHERKR 162 (614)
T ss_pred eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc--------ccc-hhhhcccCCCchHHHHHHHhhhhHHHHHH
Confidence 566788889999999999999999999999999987321 111 1111111100000000 0000000000
Q ss_pred HHHHHhhhcc-CcE-----EEE---EecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKS-SDI-----VLM---VLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~-~d~-----i~~---v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.......+.. .|- +.. ..+..+......++..+|..+|+ ...+....||||++.|+++|
T Consensus 163 le~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~L 242 (614)
T KOG0927|consen 163 LEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDL 242 (614)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCE
Confidence 0000000000 010 000 00111122223455667777887 67888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhccc-C-cEEEecCC-CChhhHHHHHhc
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIH-N-AEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~-~-~~i~~shd-~~~~~~~~~~~~ 234 (317)
+++||||+|||++++.-+-..+... . ++|+++|+ ..+..+|..+..
T Consensus 243 LLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 243 LLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred EEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhe
Confidence 8999999999999876666666533 3 69999999 668888887655
No 441
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.9e-15 Score=136.16 Aligned_cols=156 Identities=21% Similarity=0.118 Sum_probs=104.7
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.+++++..|+.|-|+|.||||||||++.|+|+..| .+|.|.++|.++.- +.....++.
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-----------qsG~I~ldg~pV~~-----------e~ledYR~L 398 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVSA-----------EQLEDYRKL 398 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-----------CCCceeECCccCCC-----------CCHHHHHHH
Confidence 45677778999999999999999999999999999 99999999988631 111111122
Q ss_pred H-hhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-----cc--cccCCcccccceeeeeeE---------eeecCCCC
Q 021103 134 I-AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-----RL--NKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 134 ~-~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~--~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
+ ..+.+..+..-.+... .....+.+..+|+++.+ .. +-..-.||.|||+|+++. +++||.-+
T Consensus 399 fSavFsDyhLF~~ll~~e-~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPE-GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHhhhHhhhHhhhCCc-cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 1 2233222211111111 11234567777777766 11 223568999999999764 89999999
Q ss_pred CCCHHHHHH----HHHHhcccC-cEEEecCCCChhhHHHHH
Q 021103 197 HVDEKLCYQ----ILHEYKIHN-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 197 ~LD~~~~~~----~l~~l~~~~-~~i~~shd~~~~~~~~~~ 232 (317)
+-||.-.+. ++-.++..| |++.+|||...-.-.|++
T Consensus 478 DQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 999987544 455666555 999999995544434443
No 442
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.59 E-value=4.6e-14 Score=120.07 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++|+|++|||||||++.+++.... ....|..+..+.+.+++.++.++|+||..... ......++.++.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 47899999999999999999976532 22346677888999999999999999853210 112234577899
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
+++++|..+.
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 9999987643
No 443
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=140.67 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=107.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+.+-|.|+||||||||+++|+|+-+- -+|.|.+. +..+-++.-..|.+.. ..+
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-----------g~G~I~~P~~~~~lflpQ~PY~p~G-----tLr 473 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-----------GSGRISMPADSALLFLPQRPYLPQG-----TLR 473 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-----------CCCceecCCCCceEEecCCCCCCCc-----cHH
Confidence 567888899999999999999999999999999876 56777665 4445555433333211 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-----ccc---ccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-----RLN---KRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~~---~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+. +.+..... ....+.+.+.|.++|+ .++ .=-..||+|||||+++| +++||.
T Consensus 474 e~---------l~YP~~~~--~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 474 EA---------LCYPNAAP--DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred HH---------HhCCCCCC--CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 11 11111111 1234567778888887 111 11357999999999999 899999
Q ss_pred CCCCCHHHHHHHHHHhcc--cC-cEEEecCCCChhhHHHH
Q 021103 195 LTHVDEKLCYQILHEYKI--HN-AEVLFREDATVDDLIDV 231 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~~--~~-~~i~~shd~~~~~~~~~ 231 (317)
|++||++....+.+.++. .+ ++|.|.|..++..+-+.
T Consensus 543 TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 543 TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 999999998888888875 34 89999999888776544
No 444
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=1.9e-15 Score=133.93 Aligned_cols=62 Identities=8% Similarity=-0.070 Sum_probs=46.7
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHH
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDV 231 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~ 231 (317)
.+.++..||+||+||+++| +++||||++||+.....+++.+. ...++++++|+.++.+++|+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCE
Confidence 3567889999999998765 78899999999998766655554 32367777887666665554
No 445
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.58 E-value=2.2e-15 Score=130.93 Aligned_cols=58 Identities=5% Similarity=-0.021 Sum_probs=45.4
Q ss_pred cccccCCcccccceeeeee-------------------EeeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEecCCCCh
Q 021103 169 RLNKRPPQIYFKKKKTGGI-------------------SFNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 169 ~~~~~~~~LS~g~~qr~~i-------------------alilDEPt~~LD~~~~~~~---l~~l~~-~~~~i~~shd~~~ 225 (317)
.+++++..||+||+||+.+ .+++||||++||+.....+ +..+.. ..++|++||+.+.
T Consensus 116 ~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~ 195 (213)
T cd03279 116 FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL 195 (213)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH
Confidence 5678889999999999976 2788999999999875554 444444 3499999999654
Q ss_pred h
Q 021103 226 D 226 (317)
Q Consensus 226 ~ 226 (317)
.
T Consensus 196 ~ 196 (213)
T cd03279 196 K 196 (213)
T ss_pred H
Confidence 4
No 446
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=3.2e-14 Score=115.70 Aligned_cols=57 Identities=33% Similarity=0.406 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGI 119 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~ 119 (317)
.+++++|++|||||||++.+.+...+.+.++++|.+.....+.+++ ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 3799999999999999999999887778889999999888888888 67888999994
No 447
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=6.7e-14 Score=119.55 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc-------CCCCCccccceeeeeeEEEEEC--------------CeeEEEecCCCcccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYN--------------DTKIQLLDLPGIIEG 122 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~-------~~~v~~~p~tT~~~~~G~i~~~--------------g~~i~~~d~~g~~~~ 122 (317)
+|+++|++|+|||||++++++. ..+....+++|.+.....+.+. +..+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 5899999999999999999973 1234556789998887777765 66889999999632
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
...........+|.+++++|+......... +.+.
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~--~~~~-------------------------------------- 114 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTA--ECLV-------------------------------------- 114 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHH--HHHH--------------------------------------
Confidence 123444455678999999987643211100 0000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHHh------------cCCCeE
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA------------RQPNSV 266 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l~------------~~~~~v 266 (317)
+ +. ....|+++|+||+|+...++. +.+. ....++
T Consensus 115 ---~----------------------~~-----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 115 ---I----------------------GE-----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred ---H----------------------HH-----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 0 00 013689999999999754321 1111 123589
Q ss_pred EEeccccccHHHHHHHHHHHh
Q 021103 267 VISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 267 ~iSa~~~~~i~~l~~~i~~~l 287 (317)
++||+++.|+++|.+.+.+.+
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred EEeccCCCCHHHHHHHHHhcc
Confidence 999999999999999987654
No 448
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.57 E-value=1.3e-15 Score=131.48 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=44.1
Q ss_pred cccCCcccccceeee------eeE---------eeecCCCCCCCHHHHH-HHHH---Hhcc--cCcEEEecCCCChhhHH
Q 021103 171 NKRPPQIYFKKKKTG------GIS---------FNSTLPLTHVDEKLCY-QILH---EYKI--HNAEVLFREDATVDDLI 229 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~------~ia---------lilDEPt~~LD~~~~~-~~l~---~l~~--~~~~i~~shd~~~~~~~ 229 (317)
++.+..||+||+||+ +++ +++|||+++||+.... .+.+ ++.. ..++|++||+.++.+.+
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 667899999999974 333 8999999999998766 5444 4443 23899999996654433
No 449
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=4.4e-16 Score=135.13 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=51.6
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCChhhHHHHHh
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~~~~~~~~ 233 (317)
.++++..||+||+||++++ +++||||++||+.....+ ++.+...+++|++||+..+.+.+|
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d--- 197 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELAD--- 197 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCC---
Confidence 4566789999999988655 778999999999885554 444444458999999976655443
Q ss_pred cccceeeeeEEEeccc
Q 021103 234 GNRKYMKCVYVYNKID 249 (317)
Q Consensus 234 ~~~~~~p~i~v~NK~D 249 (317)
.+++++|..
T Consensus 198 -------~v~~~~~~~ 206 (212)
T cd03274 198 -------RLVGIYKTN 206 (212)
T ss_pred -------EEEEEEecC
Confidence 466666654
No 450
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.57 E-value=1.3e-13 Score=116.49 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCC----------------ccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAA----------------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~----------------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
+|+|+|.+|||||||+|+|++...... ...++|.+.....+.+.+..+.++||||....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 389999999999999999998865422 13456777766777777888999999996431
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
.......+..+|.+++++|........ ..+.+.
T Consensus 76 --~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~------------------------------------------- 108 (189)
T cd00881 76 --SSEVIRGLSVSDGAILVVDANEGVQPQ--TREHLR------------------------------------------- 108 (189)
T ss_pred --HHHHHHHHHhcCEEEEEEECCCCCcHH--HHHHHH-------------------------------------------
Confidence 122334456899999999876432110 111110
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-------HHH-Hh---------------cCCC
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-------VDK-LA---------------RQPN 264 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-------~~~-l~---------------~~~~ 264 (317)
. +. ....|+++|+||+|+...+. +.. +. ...+
T Consensus 109 -~----------------------~~--~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T cd00881 109 -I----------------------AR--EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP 163 (189)
T ss_pred -H----------------------HH--HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce
Confidence 0 00 01479999999999986322 111 11 1245
Q ss_pred eEEEeccccccHHHHHHHHHHHh
Q 021103 265 SVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 265 ~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
++++||.+++|++++.+.+...+
T Consensus 164 v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 164 IVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEEEecccCcCHHHHHHHHHhhC
Confidence 78899999999999999998875
No 451
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.57 E-value=4.5e-14 Score=117.00 Aligned_cols=140 Identities=22% Similarity=0.283 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+|+++|++|+|||||+|+|+|..... ...+.+.+.+.. .+||||.+..... ........++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~---------~~~~~v~~~~~~--~iDtpG~~~~~~~---~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA---------RKTQAVEFNDKG--DIDTPGEYFSHPR---WYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC---------ccceEEEECCCC--cccCCccccCCHH---HHHHHHHHHhcCCEE
Confidence 69999999999999999999875321 134555665542 5899997533211 122333446789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|....... ....+
T Consensus 69 l~v~d~~~~~s~---~~~~~------------------------------------------------------------ 85 (158)
T PRK15467 69 IYVHGANDPESR---LPAGL------------------------------------------------------------ 85 (158)
T ss_pred EEEEeCCCcccc---cCHHH------------------------------------------------------------
Confidence 999987643210 00000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh--hHHH-HhcC---CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDK-LARQ---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~-l~~~---~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+ + ...+|+++++||+|+...+ .+.. +.+. .+.+++||+++.|+++|.+.+.+.+..
T Consensus 86 -----~~-~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 86 -----LD-I---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -----Hh-c---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 00 0 0136889999999986432 1222 2222 378899999999999999999888754
No 452
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=1.4e-13 Score=114.29 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---CeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.++|+|++|||||||+|+|++........+++|.+.....+.+. +..+.++||||..... ......+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHHhhc
Confidence 58999999999999999999876555566778887766667664 6789999999963210 1112234678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++........ ....+ ..
T Consensus 75 d~il~v~d~~~~~~~~--~~~~~--------------------------------------------~~----------- 97 (168)
T cd01887 75 DIAILVVAADDGVMPQ--TIEAI--------------------------------------------KL----------- 97 (168)
T ss_pred CEEEEEEECCCCccHH--HHHHH--------------------------------------------HH-----------
Confidence 9999999876432110 00000 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh--hH-HHHh-----------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DV-DKLA-----------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~-~~l~-----------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|.++|+||+|+.... .. +.+. .....+++||.++.|+++|.+.|.+.
T Consensus 98 -----------~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 98 -----------AK--AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred -----------HH--HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 00 0147899999999987431 11 1111 11358899999999999999998765
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 165 ~ 165 (168)
T cd01887 165 A 165 (168)
T ss_pred h
Confidence 3
No 453
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.56 E-value=1.8e-15 Score=139.79 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=94.2
Q ss_pred CcEEEEeC-----CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch
Q 021103 54 GFEVTKFG-----HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 54 ~~~~~~~~-----g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 128 (317)
+|.+++++ |++++++||||-||||+.++|+|.+.| ++|. ..+..+.+ -|.++... ..+
T Consensus 354 ~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-----------deg~--~~~~~vSy--KPQyI~~~--~~g 416 (591)
T COG1245 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-----------DEGS--EEDLKVSY--KPQYISPD--YDG 416 (591)
T ss_pred ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-----------CCCC--CccceEee--cceeecCC--CCC
Confidence 66666554 688999999999999999999999988 6664 11222221 12222211 111
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.+.+++.....+. .. ..-.-.+++..+++ .++++...|||||.||++|| +++|||.++
T Consensus 417 tV~~~l~~~~~~~--------~~---~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSA--------FG---SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhh--------cc---cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 2233332211110 00 00112234455555 57889999999999999988 899999999
Q ss_pred CCHHH---HHHHHHHhccc--CcEEEecCCCChhhHH
Q 021103 198 VDEKL---CYQILHEYKIH--NAEVLFREDATVDDLI 229 (317)
Q Consensus 198 LD~~~---~~~~l~~l~~~--~~~i~~shd~~~~~~~ 229 (317)
||.+. +..+++.+-.. .+.+++.||.-+.+.+
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 99987 34555555433 3889999997765543
No 454
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.56 E-value=6.7e-14 Score=118.23 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch------hHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG------RGRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~------~~~~~ 133 (317)
...++|+|++|+|||||+|.|++.. ..+++.+++|.++....+ + ..+.++||||+......... ....+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 4689999999999999999999974 347889999988765433 3 36889999997532111100 01111
Q ss_pred HhhhccCcEEEEEecCCC
Q 021103 134 IAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~ 151 (317)
+.....++.++++++...
T Consensus 95 l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRH 112 (179)
T ss_pred HHhChhhcEEEEEecCCC
Confidence 111223577888887654
No 455
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=9.8e-14 Score=114.56 Aligned_cols=54 Identities=33% Similarity=0.383 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHh--ccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccc
Q 021103 65 VALIGFPSVGKSTLLTLLT--GTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~--g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~ 121 (317)
|+++|++|||||||+|.|+ +...+.++.+++|..... +.+++ .+.++|+||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccc
Confidence 7999999999999999999 555667888888877643 23333 788999999754
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.55 E-value=1.4e-13 Score=115.16 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++|+|+||||||||++.|+|..... ...|.......+.++|..+.++|++|.... .......++.++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~ 83 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRAI-------RPYWRNYFENTD 83 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHhcCCC
Confidence 3579999999999999999999974320 011111222377788899999999985321 011223457789
Q ss_pred EEEEEecCCC
Q 021103 142 IVLMVLDASK 151 (317)
Q Consensus 142 ~i~~v~~~~~ 151 (317)
.+++++|...
T Consensus 84 ~ii~v~D~~~ 93 (173)
T cd04155 84 CLIYVIDSAD 93 (173)
T ss_pred EEEEEEeCCC
Confidence 9999998764
No 457
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.55 E-value=3.2e-13 Score=112.03 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||..... ......+..++
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 77 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR-------AITSAYYRGAV 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHCCCC
Confidence 7999999999999999999987655555677777777777888775 46789999853210 11123456789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+... ...+..++.. +..
T Consensus 78 ~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~--------- 103 (165)
T cd01868 78 GALLVYDITKKQT-FENVERWLKE--------------------------------------------LRD--------- 103 (165)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 8999988764322 1222222211 100
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 104 ----------~--~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 ----------H--ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ----------h--CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 01137999999999986432 2222222 23478899999999999999987653
No 458
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.55 E-value=3e-13 Score=116.19 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
+|+|+|.+|+|||||++.+++...+....|.++.+...-.+.++|. .+.++||||....... +..+.......+..+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999876544333455554544456677885 4668999997432111 101111122346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|...+.. .+.+..+++. +++
T Consensus 82 d~iilv~D~~~~~S-~~~~~~~~~~----------------------------------------i~~------------ 108 (198)
T cd04142 82 RAFILVYDICSPDS-FHYVKLLRQQ----------------------------------------ILE------------ 108 (198)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999999865421 1112111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh--c-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~--~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.........|+++|.||+|+... ++...+. . ..+.+.+||++|.|++++.+.+.+..
T Consensus 109 ----------~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 109 ----------TRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred ----------hcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 00000124799999999999543 2222222 1 24578999999999999999887653
No 459
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.55 E-value=1.8e-13 Score=111.78 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=91.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEE
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~ 144 (317)
|+|+|++|||||||+|+|++........|.+. .....+..++..+.++|+||..... ......+..+|.++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--FNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--cceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEE
Confidence 79999999999999999999864433333222 2233456667778899999853211 11223467789999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
+++|....... ......+..+ +..
T Consensus 73 ~v~d~~~~~~~-~~~~~~~~~~----------------------------------------~~~--------------- 96 (159)
T cd04159 73 YVVDAADRTAL-EAAKNELHDL----------------------------------------LEK--------------- 96 (159)
T ss_pred EEEECCCHHHH-HHHHHHHHHH----------------------------------------HcC---------------
Confidence 99987643211 1111111110 000
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
......|+++|+||.|+......+ .+. .....+.+|+.+|.|++++.+.|.+
T Consensus 97 ---------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 97 ---------PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---------hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 001247999999999987543222 111 1134689999999999999998865
No 460
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=3.2e-13 Score=114.59 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ .+|..+..+.+.+++.++.++|+||..... ......+..+|.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGNIKFTTFDLGGHQQAR-------RLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 58999999999999999999986422 11 346677778888888999999999964311 112234578999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|...+... ......+.. +++
T Consensus 88 ii~vvD~~~~~~~-~~~~~~l~~----------------------------------------l~~-------------- 112 (184)
T smart00178 88 IVYLVDAYDKERF-AESKRELDA----------------------------------------LLS-------------- 112 (184)
T ss_pred EEEEEECCcHHHH-HHHHHHHHH----------------------------------------HHc--------------
Confidence 9999998654221 111111111 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCC---hhhHHHHh--------------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLA--------------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~---~~~~~~l~--------------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.. .....|+++|+||+|+.. .+++.... +...++++||+++.|++++.+.|.+
T Consensus 113 --------~~--~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 113 --------DE--ELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred --------Ch--hhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00 012479999999999863 33333211 1223788999999999999998865
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 183 ~ 183 (184)
T smart00178 183 Y 183 (184)
T ss_pred h
Confidence 3
No 461
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.54 E-value=5.6e-15 Score=131.32 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=43.4
Q ss_pred cCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCChhhHHH
Q 021103 173 RPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDATVDDLID 230 (317)
Q Consensus 173 ~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~~~~~~~ 230 (317)
++..||+||+||+.++ +++||||++||+.....+ +..+...+ ++|++||+.++.+.+|
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCC
Confidence 3489999999998665 788999999999875544 44444334 8999999966554443
No 462
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.9e-14 Score=136.76 Aligned_cols=174 Identities=11% Similarity=0.165 Sum_probs=122.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-------CCccccccC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-------PGIIEGASE 125 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-------~g~~~~~~~ 125 (317)
.+++|.+..|+++||.|--|||+|-|+++|.|..++ ..|+|.++|.++.+.+. .+|.+..+.
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-----------~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk 344 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-----------SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-----------CCceEEECCEEccCCCHHHHHHcCCEeCCcccc
Confidence 578899999999999999999999999999998777 78999999998865441 122222222
Q ss_pred CchhHHHHHhhhccCcEEEEE-ec------CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 126 GKGRGRQVIAVSKSSDIVLMV-LD------ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v-~~------~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
..+.+.. ..-.+++.+. +. ..+.....+.+.++...+++ ..+.++..||||.+|++.|+
T Consensus 345 ~~Gl~l~----~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p 420 (500)
T COG1129 345 SEGLVLD----MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDP 420 (500)
T ss_pred cCcCcCC----CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence 2221100 0001111110 10 11223345567788888988 67788999999999999998
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --FNSTLPLTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --lilDEPt~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||||.|.|.-. +..+++++...| ++|++|.+ +++-.+|| .|+|++..-+.
T Consensus 421 ~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~D----------RIlVm~~Gri~ 480 (500)
T COG1129 421 KVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSD----------RILVMREGRIV 480 (500)
T ss_pred CEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCC----------EEEEEECCEEE
Confidence 99999999999765 667777777666 88888887 55555554 47788766443
No 463
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=3.2e-13 Score=114.98 Aligned_cols=148 Identities=25% Similarity=0.274 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCc------------------cccceeeeeeEEEE--ECCeeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAAS------------------YEFTTLTCIPGIIH--YNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~------------------~p~tT~~~~~G~i~--~~g~~i~~~d~~g~~~~ 122 (317)
..|+++|+.|+|||||+.+|++....+.+ ..+.|.+.....+. .++..+.++|+||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 47999999999999999999976543221 23556666666777 7789999999999632
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 201 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~ 201 (317)
+.......+..+|.+++++|+...... .......+..
T Consensus 83 ------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~------------------------------------ 120 (188)
T PF00009_consen 83 ------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE------------------------------------ 120 (188)
T ss_dssp ------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH------------------------------------
T ss_pred ------eeecccceecccccceeeeecccccccccccccccccc------------------------------------
Confidence 223455567889999999998654221 1111111111
Q ss_pred HHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHh-------c-----CCCeE
Q 021103 202 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA-------R-----QPNSV 266 (317)
Q Consensus 202 ~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~-------~-----~~~~v 266 (317)
...|.++|+||+|+...+ ..+.+. . ..+++
T Consensus 121 -----------------------------------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 165 (188)
T PF00009_consen 121 -----------------------------------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVI 165 (188)
T ss_dssp -----------------------------------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEE
T ss_pred -----------------------------------cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEE
Confidence 146899999999998322 111111 1 23589
Q ss_pred EEeccccccHHHHHHHHHHHhC
Q 021103 267 VISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 267 ~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
++||.+|+|++.|++.|.+.++
T Consensus 166 ~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 166 PISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999998875
No 464
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=2.2e-13 Score=116.82 Aligned_cols=88 Identities=17% Similarity=0.319 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCc--cccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH----HHhhh
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAAS--YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ----VIAVS 137 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~--~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~----~~~~~ 137 (317)
+|+|+|++|||||||+|+|+|.....+. .+++|+++..+...++|..+.++||||+.+........... .....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 6899999999999999999998754333 56899999989888999999999999997643211111111 11123
Q ss_pred ccCcEEEEEecCCC
Q 021103 138 KSSDIVLMVLDASK 151 (317)
Q Consensus 138 ~~~d~i~~v~~~~~ 151 (317)
+..++++++++...
T Consensus 82 ~g~~~illVi~~~~ 95 (196)
T cd01852 82 PGPHAFLLVVPLGR 95 (196)
T ss_pred CCCEEEEEEEECCC
Confidence 45788888887654
No 465
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.54 E-value=3.3e-13 Score=111.38 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+|+++|++|||||||++.+++.......+. .|.......+...+..+.++|+||..... ......+..+|.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHHccCCEE
Confidence 478999999999999999998642222221 12222223345567788999999964211 1112345789999
Q ss_pred EEEecCCCc
Q 021103 144 LMVLDASKS 152 (317)
Q Consensus 144 ~~v~~~~~~ 152 (317)
++++|....
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 999998654
No 466
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=5.5e-13 Score=129.14 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCcccccee
Q 021103 29 QLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTL 97 (317)
Q Consensus 29 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~ 97 (317)
.++.++..+++++.+....+ ..++|+|++|+|||||+|+|+|... |+++.|+||.
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~~--------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 50 NIAERHAMLNNELRKISRLE--------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred HHHHHHHHHHHHHHHHhccc--------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 45566666666655544322 5899999999999999999999875 5668899888
No 467
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.52 E-value=4.2e-13 Score=110.73 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|++|+|||||++.+...... .. ..|.......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCCEE
Confidence 4899999999999999999754422 21 224444445566677889999999964211 1123346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|....... ....+.+. .+++.
T Consensus 71 i~v~d~~~~~~~-~~~~~~~~----------------------------------------~~~~~-------------- 95 (158)
T cd04151 71 IYVVDSTDRDRL-GTAKEELH----------------------------------------AMLEE-------------- 95 (158)
T ss_pred EEEEECCCHHHH-HHHHHHHH----------------------------------------HHHhc--------------
Confidence 999997653211 11111110 00000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCCh---hhHH-HHhc-C-----CCeEEEeccccccHHHHHHHHHH
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVD-KLAR-Q-----PNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~-~l~~-~-----~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. .....|+++|+||+|+... .++. .+.. . ..++++||+++.|++++.+.+.+
T Consensus 96 --------~--~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 96 --------E--ELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred --------h--hhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0 0014799999999998743 2222 1211 1 23899999999999999998864
No 468
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.52 E-value=4.3e-13 Score=115.73 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=37.4
Q ss_pred eeeeEEEecccCCChhhH----HHH---h-c----CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDV----DKL---A-R----QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~----~~l---~-~----~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|+++|+||+|+...... +.+ . . ...++++||++|.|+++|.+.|.+.++
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 478899999999864332 122 1 1 245899999999999999999987653
No 469
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.52 E-value=1e-12 Score=109.43 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||+|++.+........+..+.+.....+.+.+.. +.++|+||..... ......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 68999999999999999998775432222222334444456676654 4578999852211 11223567899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|....... ..+..+... ++....
T Consensus 75 ~~i~v~d~~~~~~~-~~~~~~~~~----------------------------------------~~~~~~---------- 103 (172)
T cd01862 75 CCVLVYDVTNPKSF-ESLDSWRDE----------------------------------------FLIQAS---------- 103 (172)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcC----------
Confidence 99999987654221 111111111 111000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+..+ +....+.+ ...++.+||.+|.|++++.+.|.+.+
T Consensus 104 -----------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 104 -----------PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 001125799999999999732 22332222 24688999999999999999998754
No 470
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.51 E-value=1.8e-13 Score=118.55 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCC-------------------------------ccccceeeeeeEEEEECCeeEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKIQ 112 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~-------------------------------~~p~tT~~~~~G~i~~~g~~i~ 112 (317)
+++|+|.+|+|||||+++|++....+. ..+++|+++..+.+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986543322 1278899999998889999999
Q ss_pred EecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 113 LLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 113 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
++||||.... .......+..+|.+++++|+...
T Consensus 81 liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQY-------TRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCC
Confidence 9999996321 12334456789999999998643
No 471
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.51 E-value=1.1e-12 Score=108.99 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|+|||||++.+.+........|..+.+.....+.++|. .+.++|+||.... .......++.+|
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 76 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHhCcCC
Confidence 6899999999999999999976544444454455555566777765 4678999984321 111223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..+... ...+..++..+ .
T Consensus 77 ~ii~v~d~~~~~s-~~~l~~~~~~~--------------------------------------------~---------- 101 (166)
T cd01869 77 GIIIVYDVTDQES-FNNVKQWLQEI--------------------------------------------D---------- 101 (166)
T ss_pred EEEEEEECcCHHH-HHhHHHHHHHH--------------------------------------------H----------
Confidence 9999999765321 12222222211 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|.++|.||+|+.... +...+.. ..+.+.+||+++.|++++.+.|.+.+
T Consensus 102 ---------~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 102 ---------RYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ---------HhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 000 1247899999999986432 2222222 23578899999999999999998765
No 472
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.51 E-value=1.1e-12 Score=108.33 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|++|||||||++.+++........+..+.+...-.+.+++. .+.++|+||..... ......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 6899999999999999999987655455555555555556777774 57789999842211 12233457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...+... +.+..++..+ ..
T Consensus 75 ~~ilv~d~~~~~s~-~~~~~~l~~~--------------------------------------------~~--------- 100 (164)
T smart00175 75 GALLVYDITNRESF-ENLKNWLKEL--------------------------------------------RE--------- 100 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999987654321 1222222111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... ....+.+ ....+.+||.++.|++++.+.|.+.+
T Consensus 101 ---------~---~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 101 ---------Y---ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred ---------h---CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01247999999999987522 2222221 24588999999999999999998765
No 473
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=9.7e-13 Score=112.28 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeE-EEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-IIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G-~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++|+|++|||||||++.+.+.......++.|+.....+ .+.+++. .+.++||||-... .......+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHccCC
Confidence 689999999999999999988765555555554433333 4667665 4667899983211 01122346779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 100 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAWLTE--------------------------------------------IK--------- 100 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765321 1122222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCeeE
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVR 291 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~ 291 (317)
. . .....|+++|.||+|+... ++...+.. ..+.+.+||.+|.|++++.+.|.+.+...+
T Consensus 101 ---------~-~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 101 ---------E-Y--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ---------H-h--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 0 0 0124799999999999632 23333332 235789999999999999999988775443
No 474
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.51 E-value=1.1e-12 Score=108.46 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|+|||||++.+.+.. .+..++.|+.+.....+.++|. .+.++||||..... .-....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HHHHHHHhhC
Confidence 479999999999999999998754 3566777766655556667775 46779999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... .+.+..++.. +.+.
T Consensus 75 ~~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 102 (164)
T cd04145 75 EGFLLVFSVTDRGS-FEEVDKFHTQ----------------------------------------ILRV----------- 102 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
Confidence 99999988765321 1122211111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||+++.|++++.+.+.+.+
T Consensus 103 ------------~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 103 ------------K-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------------h-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 0 01247999999999986432 2222221 23678999999999999999987654
No 475
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.51 E-value=7.3e-13 Score=110.72 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|||||||++.+.+... .+ +.+|+......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 478999999999999999998632 12 3455555556677788889999999963211 1222346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|......- ..+..++..+ ++.
T Consensus 71 i~V~D~s~~~s~-~~~~~~~~~~----------------------------------------~~~-------------- 95 (169)
T cd04158 71 VFVVDSSHRDRV-SEAHSELAKL----------------------------------------LTE-------------- 95 (169)
T ss_pred EEEEeCCcHHHH-HHHHHHHHHH----------------------------------------hcC--------------
Confidence 999997653211 1111111110 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-----C---CeEEEeccccccHHHHHHHHHHHh
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-----P---NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-----~---~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||.|+... ++....... . .++.+||++|.|++++.+.|.+.+
T Consensus 96 ----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 96 ----------KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred ----------hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 00113699999999998632 333322221 1 245679999999999999998765
No 476
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=3.2e-13 Score=108.43 Aligned_cols=134 Identities=23% Similarity=0.276 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.++.|||+.|||||||+++|.|...... .++ .+.+.+ ..+||||-+-. ...+.........++|+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~--------KTq-~i~~~~---~~IDTPGEyiE---~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK--------KTQ-AIEYYD---NTIDTPGEYIE---NPRFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC--------ccc-eeEecc---cEEECChhhee---CHHHHHHHHHHHhhCCE
Confidence 3799999999999999999999864311 012 234433 24899984321 22233445556678999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
++++.|+..+.. .+++.++.
T Consensus 67 V~ll~dat~~~~-----------------~~pP~fa~------------------------------------------- 86 (143)
T PF10662_consen 67 VLLLQDATEPRS-----------------VFPPGFAS------------------------------------------- 86 (143)
T ss_pred EEEEecCCCCCc-----------------cCCchhhc-------------------------------------------
Confidence 999998865321 11111110
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCC-ChhhHHHH------hcCCCeEEEeccccccHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKL------ARQPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~~l------~~~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
...+|+|-|++|+|+. +.+.++.. ....+++.+|+.+++|+++|.+.|.
T Consensus 87 -------------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 87 -------------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -------------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 1147999999999999 34444322 1235689999999999999999875
No 477
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.9e-15 Score=136.38 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++....|.++|++|++|+||||+++.|...+.+ .+|.|.++|+++..+.... .+.
T Consensus 280 ~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-----------~sG~I~id~qdir~vtq~s-----------lR~ 337 (497)
T COG5265 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-----------NSGSITIDGQDIRDVTQQS-----------LRR 337 (497)
T ss_pred cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-----------cCceEEEcchhHHHhHHHH-----------HHH
Confidence 567788888999999999999999999999999877 8999999998764321100 011
Q ss_pred HHhhhccCcEEEEE------ecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE-----
Q 021103 133 VIAVSKSSDIVLMV------LDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS----- 188 (317)
Q Consensus 133 ~~~~~~~~d~i~~v------~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia----- 188 (317)
.....+ -|.+++- .....+....+.+....+.+.+ ....+--.||||||||+++|
T Consensus 338 aIg~VP-QDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 338 AIGIVP-QDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred HhCcCc-ccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 111111 1112111 0001111111122222222211 34445568999999999999
Q ss_pred ----eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 ----FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 ----lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||.||.||..+-+++...+. ...|.+++.|...- .....-|+|+...-++..+.-+++
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst----------i~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST----------IIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh----------ccCCceEEEeeCCEEEecCcHHHH
Confidence 89999999999887666655554 45588889897321 113566888877777655544444
No 478
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=3.3e-14 Score=145.93 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE---EecCCCccccccCCch-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ---LLDLPGIIEGASEGKG- 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~---~~d~~g~~~~~~~~~~- 128 (317)
.+++=-..+|...||+|.+|||||||||.|+|...- -.++|.|.++|.+.. +-...|+.++......
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~---------G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG---------GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCccc---------ceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 455556678999999999999999999999998632 238999999998754 2222344332111100
Q ss_pred -hHHHH---HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc----ccccceeeeeeE----------
Q 021103 129 -RGRQV---IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ----IYFKKKKTGGIS---------- 188 (317)
Q Consensus 129 -~~~~~---~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~----LS~g~~qr~~ia---------- 188 (317)
-+++. ...++.. -+ ....+..+.+++.++.+++ ..+.-++. ||..||+|+.|+
T Consensus 879 ~TVrESL~fSA~LRlp------~~-v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLP------KE-VSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCC------Cc-CCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 00110 0111100 00 0122233678888888888 35555555 999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
|+|||||||||..+...+++.++ ..| +++..=|-+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSID 993 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHH
Confidence 89999999999998666655554 444 888888986543
No 479
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=1.9e-12 Score=107.47 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+.+........+..+.+...-.+.+++. .+.++|+||-... .......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF-------RTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHhccC
Confidence 47999999999999999999764422111122223333445667774 5678899984211 11123345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... .+.+..++..+ ..
T Consensus 77 d~~llv~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~-------- 103 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPHWIEEV--------------------------------------------EK-------- 103 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHHH--------------------------------------------HH--------
Confidence 99999998865422 11222222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc---CCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||++|.|++++.+.+.+.
T Consensus 104 -----------~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 104 -----------Y--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -----------h--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 0 01247899999999997432 2222222 2357899999999999999988764
No 480
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.50 E-value=1.5e-12 Score=107.10 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|+|||||+|.+++... ...++.|+.+.....+.+++.. +.++||+|..... ......+..++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHHhcCC
Confidence 689999999999999999997642 3455556555555566777754 5679999843210 11123456788
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...... ...+..++.. +.+.
T Consensus 75 ~~i~v~~~~~~~s-~~~~~~~~~~----------------------------------------i~~~------------ 101 (162)
T cd04138 75 GFLCVFAINSRKS-FEDIHTYREQ----------------------------------------IKRV------------ 101 (162)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh------------
Confidence 8888887654321 1111111111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||++|.|++++.+.+.+.+
T Consensus 102 -----------~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 102 -----------K-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred -----------c-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 0 01247999999999997532 2222222 23578999999999999999987643
No 481
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.50 E-value=1.4e-12 Score=111.27 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|+|||||++.+++... ...++.|+.+...-.+.++|.. +.++||+|..... ......++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------ALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHHHhCC
Confidence 478999999999999999985432 3446666655544556677765 6789999852211 11123457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+...... .+.+..++..+ ....
T Consensus 73 ~~ilv~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~~~---------- 100 (190)
T cd04144 73 GFILVYSITSRST-FERVERFREQI-----------------------------------------QRVK---------- 100 (190)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------HHHh----------
Confidence 9999998754321 12222222111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCeeEEEe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~ 294 (317)
.......|+++|.||+|+.... ....+.+ ....+.+||+++.|++++.+.+.+.+..-+--+
T Consensus 101 -----------~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 101 -----------DESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred -----------cccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 0001247999999999996421 2222222 135789999999999999999988764433333
Q ss_pred cC
Q 021103 295 KP 296 (317)
Q Consensus 295 ~~ 296 (317)
.+
T Consensus 170 ~~ 171 (190)
T cd04144 170 QG 171 (190)
T ss_pred CC
Confidence 33
No 482
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.50 E-value=6.7e-13 Score=111.26 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+. .|.......+.+++..+.++|+||..... ......+..+|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 47999999999999999999987432 111 12222334566778888999999853210 112234678999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|....... ..+...+.. ++..
T Consensus 85 ~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 110 (173)
T cd04154 85 LIWVVDSSDRLRL-DDCKRELKE----------------------------------------LLQE------------- 110 (173)
T ss_pred EEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC-------------
Confidence 9999997654211 111111111 0000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhc-------CCCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
......|+++|.||+|+... ++...... ...++.+||++|.|++++.+.+.+
T Consensus 111 -----------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 111 -----------ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred -----------hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 00124799999999999743 23332221 225888999999999999988753
No 483
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.50 E-value=2.1e-12 Score=112.33 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++|+|++|||||||++.+++........|..+.+...-.+.+++ ..+.++|++|..... ......++.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHhhcC
Confidence 689999999999999999997654433345555666666677754 467889999842110 1112245789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|..+.... +.+..++..+ ...
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~~~l-----------------------------------------~~~---------- 102 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWYSMV-----------------------------------------RKV---------- 102 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHH-----------------------------------------HHh----------
Confidence 999999998654321 1222221111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
........|+++|.||+|+... +....+.+. ...+.+||++|.|++++.+.+.+.+..
T Consensus 103 -----------~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 103 -----------LKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred -----------ccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0000123578999999999742 122233222 347889999999999999999877644
No 484
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.50 E-value=1.8e-12 Score=105.77 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||+|.+.+...+....+.++.+.....+.+.+ ..+.++|+||..... ......+..+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR-------SITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH-------HHHHHHhcCCC
Confidence 689999999999999999998876544444444444444555544 557788999863211 12234567799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...... ...+..++..+ .
T Consensus 75 ~ii~v~d~~~~~~-~~~~~~~~~~~--------------------------------------------~---------- 99 (159)
T cd00154 75 GAILVYDITNRES-FENLDKWLKEL--------------------------------------------K---------- 99 (159)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----------
Confidence 9999998765321 12222222111 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
+. .....|.++|+||+|+... ++...+.. ....+.+||.++.|++++.+.|.
T Consensus 100 --------~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 100 --------EY---APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred --------Hh---CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 00 0024799999999999622 22333322 35688999999999999998875
No 485
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50 E-value=8.4e-13 Score=110.92 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|+|||||++.+++.... . ...|.....+.+.+++..+.++|+||.... .......++.+|.
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHhhcCCE
Confidence 57999999999999999999764432 1 123444455677788888999999996321 0112234678999
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
+++++|....
T Consensus 86 vi~V~D~s~~ 95 (174)
T cd04153 86 VILVIDSTDR 95 (174)
T ss_pred EEEEEECCCH
Confidence 9999997653
No 486
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.49 E-value=1.3e-12 Score=107.32 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++++++.. ....++.+|.+.....+.+++ ..+.++|+||.... .......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------SAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHHhcCC
Confidence 48999999999999999999776 456677777777777788875 35778999985331 112223456789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++....... ..+..+... +...
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 99 (160)
T cd00876 73 GFILVYSITDRESF-EEIKGYREQ----------------------------------------ILRV------------ 99 (160)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHh------------
Confidence 99999887543221 111111110 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHH-hcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKL-ARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l-~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+... ++...+ ... .+.+.+||.++.|++++.+.|.+.
T Consensus 100 -----------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 100 -----------K-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred -----------c-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 0 0125799999999998752 122222 222 468999999999999999988764
No 487
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.49 E-value=3e-12 Score=106.78 Aligned_cols=152 Identities=20% Similarity=0.169 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|||||||++.+++...+....|..+.+.....+.+++. .+.++|++|-.. ........++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 37999999999999999999987654333344445555556667664 567899998421 011123355789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..++.. +..
T Consensus 78 d~il~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~-------- 104 (168)
T cd01866 78 AGALLVYDITRRET-FNHLTSWLED--------------------------------------------ARQ-------- 104 (168)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999764321 1222222211 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ...+.|+++|.||+|+... ++...+.. ....+.+||.++.|++++.+.+.+.+
T Consensus 105 ----------~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 105 ----------H---SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred ----------h---CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0125799999999998732 22222221 24578899999999999998887654
No 488
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.49 E-value=1.9e-12 Score=107.14 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++...+....|..+.+...-.+.++|. .+.++||+|..... ......++.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHhccCC
Confidence 6899999999999999999987654333333333333335566554 56789999853211 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+.. ...+..++..+ .+.... |
T Consensus 75 ~~ilv~D~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~~--------~ 105 (168)
T cd04119 75 GVLLVYDVTDRQS-FEALDSWLKEM----------------------------------------KQEGGP--------H 105 (168)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHH----------------------------------------HHhccc--------c
Confidence 9999998765422 11222222211 000000 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+... ++...... ....+.+||+++.|++++.+.|.+.+
T Consensus 106 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 106 ------------GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00124799999999999732 22222221 23578999999999999999987654
No 489
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.49 E-value=2.1e-12 Score=107.54 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|+|||||++.+++........|..+.+.....+.++|. .+.++|+||..... ......+..+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHhCCC
Confidence 47999999999999999999977543222333333334445667775 46788999842211 1122356789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..+.. ....+..++..+ .
T Consensus 77 d~~i~v~d~~~~~-s~~~~~~~~~~i--------------------------------------------~--------- 102 (167)
T cd01867 77 MGIILVYDITDEK-SFENIRNWMRNI--------------------------------------------E--------- 102 (167)
T ss_pred CEEEEEEECcCHH-HHHhHHHHHHHH--------------------------------------------H---------
Confidence 9999999875432 122222222111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... ....+.+ ..+.+.+||.++.|++++.+.+.+.+
T Consensus 103 ----------~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 103 ----------EH--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ----------Hh--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997421 2222221 23578999999999999999988765
No 490
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.49 E-value=2.1e-12 Score=106.55 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|-.+.+.....+.+++ ..+.++|+||..... ......++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR-------TLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHHHhCCCC
Confidence 689999999999999999998764332223222233333455555 356788999853211 11123457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|...... .+.+..++..+ ..+
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~~----------- 101 (161)
T cd01863 75 GVILVYDVTRRDT-FTNLETWLNEL-----------------------------------------ETY----------- 101 (161)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHH-----------------------------------------HHh-----------
Confidence 9999998764322 11222222110 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+... ++...+.. ....+.+||.+|.|++++.+.+.+.
T Consensus 102 -----------~-~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 102 -----------S-TNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -----------C-CCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 0 0125789999999999732 22222222 2358899999999999999988764
No 491
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.49 E-value=1.6e-12 Score=109.35 Aligned_cols=147 Identities=20% Similarity=0.305 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---------------CccccceeeeeeEEEEE---C--CeeEEEecCCCccccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA---------------ASYEFTTLTCIPGIIHY---N--DTKIQLLDLPGIIEGA 123 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v---------------~~~p~tT~~~~~G~i~~---~--g~~i~~~d~~g~~~~~ 123 (317)
.|+++|.+|+|||||++.+++....+ ....++|..+..-.+.+ + +..+.++||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743111 11234555554434444 2 3457799999974321
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHH
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLC 203 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~ 203 (317)
......+..+|.+++++|........ ....+
T Consensus 82 -------~~~~~~~~~ad~~i~v~D~~~~~~~~-~~~~~----------------------------------------- 112 (179)
T cd01890 82 -------YEVSRSLAACEGALLLVDATQGVEAQ-TLANF----------------------------------------- 112 (179)
T ss_pred -------HHHHHHHHhcCeEEEEEECCCCccHh-hHHHH-----------------------------------------
Confidence 12233457799999999976432111 00000
Q ss_pred HHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHHHh---cC--CCeEEEecccccc
Q 021103 204 YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA---RQ--PNSVVISCNLKLN 275 (317)
Q Consensus 204 ~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~l~---~~--~~~v~iSa~~~~~ 275 (317)
.. .. ....|+++|+||+|+..... .+.+. .. ...+.+||.+|.|
T Consensus 113 ~~----------------------~~------~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (179)
T cd01890 113 YL----------------------AL------ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLG 164 (179)
T ss_pred HH----------------------HH------HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCC
Confidence 00 00 01468999999999864211 12222 22 2478999999999
Q ss_pred HHHHHHHHHHHh
Q 021103 276 LDRLLARMWEEM 287 (317)
Q Consensus 276 i~~l~~~i~~~l 287 (317)
+++|.+.+.+.+
T Consensus 165 i~~l~~~l~~~~ 176 (179)
T cd01890 165 VEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 492
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.48 E-value=2.9e-12 Score=106.51 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|.++.+...-.+..++. .+.++|++|..... ......++.++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHccCCc
Confidence 6899999999999999999986532221222221222223444553 57789999853211 11233467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|...... .+.+.+++..+ .
T Consensus 76 ~~l~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~---------- 100 (165)
T cd01865 76 GFILMYDITNEES-FNAVQDWSTQI--------------------------------------------K---------- 100 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----------
Confidence 9999998764321 12222222211 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... ....+... ...+.+||+++.|++++.+.+.+.+
T Consensus 101 ---------~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 101 ---------TY--SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ---------Hh--CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 01247899999999996432 22222221 2588899999999999999998764
No 493
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=2.1e-12 Score=107.50 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+++........+..+.+.....+.++|.. +.++|++|.... .......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhcCC
Confidence 579999999999999999998654433334445556666677888855 567899985321 11223456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ +.
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~----------- 107 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWLREI-----------------------------------------EQ----------- 107 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999998754321 11122221110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ....|+++|.||+|+..... ...+.+ ....+.+||+++.|++++.+.|.+.
T Consensus 108 -----------~~--~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 108 -----------YA--NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred -----------hC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 11478899999999874321 122222 2457899999999999999998764
No 494
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.47 E-value=2.2e-12 Score=106.22 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|||||||++.+++.... . ...|.......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHhccCCEE
Confidence 4899999999999999999988622 1 1223333344566778889999999954311 1122345778999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|...+..- ..+...+.. ++.
T Consensus 71 i~v~D~~~~~~~-~~~~~~~~~----------------------------------------~~~--------------- 94 (158)
T cd00878 71 IFVVDSSDRERI-EEAKEELHK----------------------------------------LLN--------------- 94 (158)
T ss_pred EEEEECCCHHHH-HHHHHHHHH----------------------------------------HHh---------------
Confidence 999998754211 111111111 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHH
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.. .....|+++|.||+|+.... +...... ...++.+||++|.|++++.+.|..
T Consensus 95 -------~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 95 -------EE--ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred -------Cc--ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 00 01257999999999998533 2222111 124788999999999999988754
No 495
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=1.2e-13 Score=118.56 Aligned_cols=69 Identities=4% Similarity=-0.208 Sum_probs=50.6
Q ss_pred HHHHHHHHHccccccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc----c--cC-cE
Q 021103 157 QILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK----I--HN-AE 216 (317)
Q Consensus 157 ~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~----~--~~-~~ 216 (317)
..+.++|+. .-..++++.+||+||+||+.++ +++||||++||......+.+.+. . .+ ++
T Consensus 91 ~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i 169 (198)
T cd03276 91 DMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI 169 (198)
T ss_pred HHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 456666665 3356788999999999998764 89999999999987655544332 2 22 78
Q ss_pred EEecCCCChh
Q 021103 217 VLFREDATVD 226 (317)
Q Consensus 217 i~~shd~~~~ 226 (317)
++++|+.+..
T Consensus 170 ii~th~~~~i 179 (198)
T cd03276 170 FITPQDISGL 179 (198)
T ss_pred EEECCccccc
Confidence 8999996543
No 496
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.47 E-value=3.6e-12 Score=105.62 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++++|.+|||||||++.+.+..... .+..| ..+...-.+.+++. .+.++||+|..... ......+..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCCC
Confidence 68999999999999999887654321 11111 11112223445554 46789999853211 1122346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 74 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 99 (161)
T cd04124 74 HACILVFDVTRKIT-YKNLSKWYEE--------------------------------------------LR--------- 99 (161)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765322 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+..... ...+.. ..+.+.+||+++.|++++.+.+.+..
T Consensus 100 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 100 -------------EYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -------------HhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0012479999999999853221 111211 24578999999999999999998754
No 497
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.47 E-value=3.4e-12 Score=106.80 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeee-eeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTC-IPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~-~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
..+++++|.+|+|||||++.+.+....+.+|..|+... ....+.++|.. +.+.|++|-..... .....+.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~ 76 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAELA 76 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhhh
Confidence 35799999999999999999988654335566655433 22456677744 55678776422110 1112347
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|..++.. .+.+.++++. +
T Consensus 77 ~~d~~llv~d~~~~~s-~~~~~~~~~~--------------------------------------------~-------- 103 (169)
T cd01892 77 ACDVACLVYDSSDPKS-FSYCAEVYKK--------------------------------------------Y-------- 103 (169)
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------h--------
Confidence 8999999998765421 1111111111 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... ..+.+.+ ....+.+||.++.|++++.+.+.+.+
T Consensus 104 --------------~-~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 104 --------------F-MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --------------c-cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 0 01147999999999986432 1223322 23458999999999999999998765
No 498
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=3.3e-12 Score=105.48 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+.+... +..++.|+.+.....+.+++.. +.++||||..... .-....++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-------AMRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc-------hHHHHHhhcC
Confidence 3799999999999999999886542 3456666665556667777754 5678999953211 0111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... .+.+..++..+ ..
T Consensus 74 ~~~ilv~d~~~~~s-~~~~~~~~~~i----------------------------------------~~------------ 100 (163)
T cd04136 74 QGFVLVYSITSQSS-FNDLQDLREQI----------------------------------------LR------------ 100 (163)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH------------
Confidence 99999888754322 11121111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc-C-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~-~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+.+ + .+.+.+||+++.|++++.+.+.+.+
T Consensus 101 -----------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 101 -----------VK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----------hc-CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 00 01247999999999986432 1222222 1 4578899999999999999987653
No 499
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.46 E-value=4.3e-12 Score=104.69 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++... +.++.+|+.+.....+.+++. .+.++|+||..... ......++.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhhcCC
Confidence 689999999999999999997543 356666766665556667654 46788999853211 11223456778
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...+.. ...+..++..+ +.
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------- 99 (164)
T cd04139 74 GFLLVFSITDMES-FTATAEFREQI----------------------------------------LR------------- 99 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH-------------
Confidence 8888877654321 11111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh--h---hHHHHhc-C-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--D---DVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~---~~~~l~~-~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... . ....+.. + .+.+.+||.++.|++++.+.+.+.+
T Consensus 100 ----------~~-~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 100 ----------VK-DDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ----------hc-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0124899999999999752 1 1112222 2 4688999999999999999998765
No 500
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.46 E-value=1.1e-12 Score=106.20 Aligned_cols=74 Identities=27% Similarity=0.419 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|++|+|||||+|.+++.... ++. ...+.+.+ .++||||...... .........++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~------t~~~~~~~---~~iDt~G~~~~~~---~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK------TQAVEYND---GAIDTPGEYVENR---RLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc------ceeEEEcC---eeecCchhhhhhH---HHHHHHHHHhhcCCEE
Confidence 6899999999999999999987532 111 12234433 5789999632110 1112222346789999
Q ss_pred EEEecCCCc
Q 021103 144 LMVLDASKS 152 (317)
Q Consensus 144 ~~v~~~~~~ 152 (317)
++++|...+
T Consensus 67 ilv~d~~~~ 75 (142)
T TIGR02528 67 ALVQSATDP 75 (142)
T ss_pred EEEecCCCC
Confidence 999987643
Done!