Query 021103
Match_columns 317
No_of_seqs 470 out of 4006
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 3.1E-47 1.1E-51 353.9 29.1 314 2-315 10-327 (376)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 9.9E-29 3.4E-33 228.0 7.6 177 53-252 21-219 (359)
3 3tif_A Uncharacterized ABC tra 99.9 1.1E-29 3.8E-34 222.7 0.3 177 53-250 22-223 (235)
4 3tui_C Methionine import ATP-b 99.9 4.5E-29 1.5E-33 230.4 2.4 178 53-252 45-244 (366)
5 3rlf_A Maltose/maltodextrin im 99.9 2.9E-28 9.8E-33 226.4 6.4 174 53-253 20-215 (381)
6 2pcj_A ABC transporter, lipopr 99.9 7.3E-29 2.5E-33 216.0 -0.5 164 53-227 21-204 (224)
7 2olj_A Amino acid ABC transpor 99.9 3.7E-28 1.3E-32 216.2 3.9 176 53-251 41-238 (263)
8 1g6h_A High-affinity branched- 99.9 3.7E-28 1.3E-32 215.9 3.4 164 53-230 24-221 (257)
9 1z47_A CYSA, putative ABC-tran 99.9 1.3E-27 4.4E-32 220.6 7.0 172 53-251 32-225 (355)
10 3gfo_A Cobalt import ATP-bindi 99.9 3E-27 1E-31 211.6 9.0 176 53-251 25-223 (275)
11 2onk_A Molybdate/tungstate ABC 99.9 1.1E-27 3.7E-32 210.6 5.8 171 53-251 16-206 (240)
12 2yyz_A Sugar ABC transporter, 99.9 1E-27 3.5E-32 221.7 5.4 172 53-251 20-213 (359)
13 1v43_A Sugar-binding transport 99.9 2.1E-27 7.2E-32 220.6 7.4 172 53-251 28-221 (372)
14 1g29_1 MALK, maltose transport 99.9 1.6E-27 5.6E-32 221.6 6.0 174 53-251 20-219 (372)
15 1oxx_K GLCV, glucose, ABC tran 99.9 7E-28 2.4E-32 222.8 3.4 174 53-251 22-220 (353)
16 1b0u_A Histidine permease; ABC 99.9 6.4E-28 2.2E-32 214.8 2.7 178 53-251 23-232 (262)
17 2it1_A 362AA long hypothetical 99.9 1.7E-27 5.7E-32 220.5 4.9 172 53-251 20-213 (362)
18 1ji0_A ABC transporter; ATP bi 99.9 1.7E-27 5.8E-32 209.5 4.6 164 53-230 23-207 (240)
19 3d31_A Sulfate/molybdate ABC t 99.9 8.1E-28 2.8E-32 221.7 2.5 171 53-251 17-207 (348)
20 4g1u_C Hemin import ATP-bindin 99.9 6.3E-28 2.2E-32 215.2 0.7 174 53-251 28-227 (266)
21 1vpl_A ABC transporter, ATP-bi 99.9 3.1E-27 1.1E-31 209.5 4.0 173 53-251 32-225 (256)
22 2ihy_A ABC transporter, ATP-bi 99.9 5E-27 1.7E-31 210.7 4.8 158 53-225 38-225 (279)
23 2yz2_A Putative ABC transporte 99.9 1E-26 3.4E-31 207.6 4.7 171 53-251 24-217 (266)
24 1sgw_A Putative ABC transporte 99.9 1.5E-27 5.2E-32 205.9 -0.7 158 53-231 26-202 (214)
25 2qi9_C Vitamin B12 import ATP- 99.9 9.6E-27 3.3E-31 205.5 2.2 154 53-225 17-195 (249)
26 2ff7_A Alpha-hemolysin translo 99.9 4.5E-26 1.5E-30 201.2 3.9 170 53-251 26-222 (247)
27 2nq2_C Hypothetical ABC transp 99.9 5.7E-26 1.9E-30 201.2 4.2 158 53-230 22-197 (253)
28 1mv5_A LMRA, multidrug resista 99.9 2.3E-26 7.8E-31 202.7 1.4 171 53-251 19-216 (243)
29 2d2e_A SUFC protein; ABC-ATPas 99.9 1E-25 3.6E-30 199.3 4.8 160 53-226 20-206 (250)
30 2pjz_A Hypothetical protein ST 99.9 8.3E-26 2.8E-30 201.0 3.9 156 53-230 22-193 (263)
31 2ixe_A Antigen peptide transpo 99.9 2.9E-26 1E-30 205.0 0.4 174 53-251 36-235 (271)
32 2zu0_C Probable ATP-dependent 99.9 1E-25 3.5E-30 201.1 3.5 160 53-226 37-227 (267)
33 3nh6_A ATP-binding cassette SU 99.9 6.3E-26 2.2E-30 205.6 0.2 173 53-254 71-270 (306)
34 1wxq_A GTP-binding protein; st 99.9 6.9E-24 2.3E-28 199.3 12.8 244 64-316 2-352 (397)
35 3gd7_A Fusion complex of cysti 99.9 1.8E-25 6.1E-30 208.9 -0.9 174 53-257 38-238 (390)
36 2ghi_A Transport protein; mult 99.9 8.5E-25 2.9E-29 194.4 3.4 169 53-251 37-232 (260)
37 2cbz_A Multidrug resistance-as 99.9 1.5E-23 5.1E-28 184.0 11.3 149 53-229 22-195 (237)
38 1ni3_A YCHF GTPase, YCHF GTP-b 99.9 6.9E-24 2.3E-28 198.1 9.4 230 61-315 19-329 (392)
39 2pze_A Cystic fibrosis transme 99.9 2.3E-24 7.7E-29 188.2 5.2 157 53-251 25-208 (229)
40 3b5x_A Lipid A export ATP-bind 99.9 5.8E-24 2E-28 209.6 5.4 172 53-252 360-558 (582)
41 2bbs_A Cystic fibrosis transme 99.9 1.1E-23 3.7E-28 189.8 3.8 155 53-250 55-236 (290)
42 3b60_A Lipid A export ATP-bind 99.9 5.9E-24 2E-28 209.5 0.9 171 53-251 360-557 (582)
43 1jal_A YCHF protein; nucleotid 99.9 2.1E-22 7.2E-27 186.0 9.4 235 62-315 2-301 (363)
44 4a82_A Cystic fibrosis transme 99.9 1.2E-23 4.2E-28 207.0 1.0 176 53-257 358-560 (578)
45 3qf4_B Uncharacterized ABC tra 99.9 1.6E-23 5.4E-28 207.0 0.9 178 53-259 372-576 (598)
46 2yl4_A ATP-binding cassette SU 99.9 2.8E-23 9.5E-28 205.2 1.9 173 53-251 361-560 (595)
47 3ozx_A RNAse L inhibitor; ATP 99.9 3.8E-23 1.3E-27 201.1 2.0 148 58-230 290-454 (538)
48 3qf4_A ABC transporter, ATP-bi 99.9 3E-23 1E-27 204.5 0.5 173 53-254 360-559 (587)
49 2dby_A GTP-binding protein; GD 99.9 2.6E-21 8.8E-26 179.6 12.9 233 64-315 3-306 (368)
50 2ohf_A Protein OLA1, GTP-bindi 99.8 3.4E-21 1.2E-25 179.5 12.6 238 61-315 21-327 (396)
51 2qtf_A Protein HFLX, GTP-bindi 99.8 8.3E-21 2.8E-25 176.4 14.9 163 63-290 180-355 (364)
52 1yqt_A RNAse L inhibitor; ATP- 99.8 1.1E-22 3.9E-27 198.1 -0.2 145 59-230 309-470 (538)
53 3bk7_A ABC transporter ATP-bin 99.8 1.5E-22 5.2E-27 199.4 0.5 140 59-225 379-534 (607)
54 4f4c_A Multidrug resistance pr 99.8 7.7E-22 2.6E-26 209.9 0.9 183 53-262 1096-1305(1321)
55 1yqt_A RNAse L inhibitor; ATP- 99.8 1E-21 3.6E-26 191.3 1.7 164 53-231 39-227 (538)
56 3j16_B RLI1P; ribosome recycli 99.8 1.4E-20 4.7E-25 185.3 8.2 147 53-226 364-531 (608)
57 1udx_A The GTP-binding protein 99.8 1.3E-19 4.3E-24 170.8 14.3 175 53-292 148-328 (416)
58 3ozx_A RNAse L inhibitor; ATP 99.8 2.3E-21 7.9E-26 188.6 2.5 74 158-231 118-206 (538)
59 3j16_B RLI1P; ribosome recycli 99.8 3.7E-21 1.3E-25 189.2 4.0 75 157-231 200-290 (608)
60 3bk7_A ABC transporter ATP-bin 99.8 2.4E-21 8.3E-26 190.8 1.6 155 54-225 110-290 (607)
61 3g5u_A MCG1178, multidrug resi 99.8 4.2E-21 1.4E-25 203.8 3.3 180 53-259 1050-1256(1284)
62 2iw3_A Elongation factor 3A; a 99.8 1.2E-20 4.1E-25 192.6 6.4 69 157-225 878-960 (986)
63 3ux8_A Excinuclease ABC, A sub 99.8 1.4E-20 4.7E-25 188.4 5.7 70 161-230 184-271 (670)
64 2gj8_A MNME, tRNA modification 99.8 2.7E-19 9.4E-24 148.7 11.4 161 61-289 3-166 (172)
65 3g5u_A MCG1178, multidrug resi 99.8 1.4E-20 4.7E-25 199.8 3.4 173 53-254 407-606 (1284)
66 1lnz_A SPO0B-associated GTP-bi 99.8 2.5E-19 8.6E-24 165.0 11.2 169 55-289 151-330 (342)
67 4f4c_A Multidrug resistance pr 99.8 1.1E-20 3.6E-25 201.2 1.2 174 53-255 435-635 (1321)
68 1xzp_A Probable tRNA modificat 99.8 4.2E-18 1.4E-22 163.5 18.7 154 62-287 243-403 (482)
69 3iby_A Ferrous iron transport 99.8 3.8E-19 1.3E-23 157.6 10.2 151 64-286 3-164 (256)
70 3i8s_A Ferrous iron transport 99.8 7.5E-19 2.6E-23 157.3 11.8 154 63-288 4-168 (274)
71 1wf3_A GTP-binding protein; GT 99.8 3.5E-18 1.2E-22 154.9 15.9 156 64-289 9-173 (301)
72 2wji_A Ferrous iron transport 99.8 6.2E-18 2.1E-22 139.3 15.9 153 63-287 4-163 (165)
73 3iev_A GTP-binding protein ERA 99.8 8.7E-18 3E-22 152.8 16.9 158 63-289 11-182 (308)
74 1ega_A Protein (GTP-binding pr 99.8 1.5E-18 5E-23 157.5 11.3 156 62-289 8-175 (301)
75 1mky_A Probable GTP-binding pr 99.8 7.2E-18 2.5E-22 160.7 16.3 155 63-288 2-165 (439)
76 3gee_A MNME, tRNA modification 99.8 1.5E-17 5.1E-22 159.5 18.5 159 62-288 233-397 (476)
77 3ux8_A Excinuclease ABC, A sub 99.8 1.4E-19 4.7E-24 181.2 4.4 70 158-227 522-610 (670)
78 1mky_A Probable GTP-binding pr 99.8 8.1E-18 2.8E-22 160.3 16.3 155 62-287 180-353 (439)
79 2iw3_A Elongation factor 3A; a 99.8 1.8E-19 6E-24 184.1 3.5 149 53-231 452-614 (986)
80 2e87_A Hypothetical protein PH 99.7 2.9E-16 9.8E-21 145.7 24.3 162 62-288 167-335 (357)
81 3b1v_A Ferrous iron uptake tra 99.7 5.6E-18 1.9E-22 151.4 12.0 152 63-288 4-163 (272)
82 3a1s_A Iron(II) transport prot 99.7 1.4E-17 4.9E-22 147.6 14.5 154 63-288 6-166 (258)
83 3geh_A MNME, tRNA modification 99.7 2.1E-17 7.1E-22 157.9 15.5 156 62-289 224-384 (462)
84 2dyk_A GTP-binding protein; GT 99.7 7.4E-17 2.5E-21 131.3 16.1 154 63-287 2-160 (161)
85 3k53_A Ferrous iron transport 99.7 2.3E-17 8E-22 147.2 14.0 155 63-288 4-165 (271)
86 2wjg_A FEOB, ferrous iron tran 99.7 4.6E-17 1.6E-21 136.3 13.6 156 63-290 8-170 (188)
87 4dhe_A Probable GTP-binding pr 99.7 8.3E-17 2.8E-21 138.7 12.9 158 62-289 29-211 (223)
88 2hjg_A GTP-binding protein ENG 99.7 3.3E-17 1.1E-21 156.0 9.6 155 63-288 4-164 (436)
89 3sop_A Neuronal-specific septi 99.7 1.8E-17 6E-22 147.9 5.9 147 64-257 4-159 (270)
90 3pih_A Uvrabc system protein A 99.7 2.4E-17 8.1E-22 168.1 7.2 70 157-226 783-871 (916)
91 4dcu_A GTP-binding protein ENG 99.7 4.9E-16 1.7E-20 148.7 13.8 155 62-287 195-367 (456)
92 2qu8_A Putative nucleolar GTP- 99.7 1.9E-15 6.6E-20 131.0 16.3 163 62-290 29-206 (228)
93 2hjg_A GTP-binding protein ENG 99.7 3.2E-16 1.1E-20 149.2 12.3 156 63-288 176-348 (436)
94 4dcu_A GTP-binding protein ENG 99.7 1.9E-16 6.5E-21 151.5 10.7 156 62-288 23-184 (456)
95 2vf7_A UVRA2, excinuclease ABC 99.7 1.4E-17 4.7E-22 168.5 2.6 72 157-228 708-798 (842)
96 2lkc_A Translation initiation 99.7 2.8E-15 9.7E-20 124.0 15.6 150 62-288 8-170 (178)
97 3lxw_A GTPase IMAP family memb 99.7 2.1E-15 7.2E-20 132.8 15.5 90 62-151 21-117 (247)
98 1tq4_A IIGP1, interferon-induc 99.7 1.1E-17 3.9E-22 157.1 0.8 101 64-209 71-208 (413)
99 3tw8_B RAS-related protein RAB 99.7 4E-15 1.4E-19 123.1 16.2 151 63-287 10-169 (181)
100 3pqc_A Probable GTP-binding pr 99.7 2.5E-15 8.6E-20 126.0 15.0 153 62-288 23-193 (195)
101 3qq5_A Small GTP-binding prote 99.6 4.2E-16 1.4E-20 147.1 10.7 156 62-289 34-196 (423)
102 2npi_A Protein CLP1; CLP1-PCF1 99.6 4.9E-19 1.7E-23 169.0 -9.7 143 55-224 131-299 (460)
103 1svi_A GTP-binding protein YSX 99.6 3.2E-15 1.1E-19 125.8 14.3 153 62-288 23-194 (195)
104 4aby_A DNA repair protein RECN 99.6 1.5E-16 5.1E-21 150.2 6.5 51 177-227 296-360 (415)
105 4gp7_A Metallophosphoesterase; 99.6 4.6E-18 1.6E-22 141.5 -3.7 55 173-227 80-163 (171)
106 3lxx_A GTPase IMAP family memb 99.6 4.7E-15 1.6E-19 129.6 15.3 90 62-151 29-124 (239)
107 1m2o_B GTP-binding protein SAR 99.6 1.1E-14 3.8E-19 122.6 16.4 149 63-286 24-189 (190)
108 3tkl_A RAS-related protein RAB 99.6 1.9E-14 6.4E-19 121.0 17.8 153 63-288 17-178 (196)
109 2xtp_A GTPase IMAP family memb 99.6 6.2E-15 2.1E-19 130.4 15.3 90 62-151 22-117 (260)
110 3b85_A Phosphate starvation-in 99.6 4.2E-17 1.4E-21 139.9 0.1 129 60-227 20-162 (208)
111 2ygr_A Uvrabc system protein A 99.6 3.5E-16 1.2E-20 159.4 6.7 69 159-227 843-930 (993)
112 2r6f_A Excinuclease ABC subuni 99.6 1.8E-16 6.2E-21 160.9 4.4 69 158-226 824-911 (972)
113 2h57_A ADP-ribosylation factor 99.6 8.1E-15 2.8E-19 123.0 13.7 158 62-290 21-188 (190)
114 1r8s_A ADP-ribosylation factor 99.6 2.8E-14 9.6E-19 116.3 16.6 150 64-288 2-161 (164)
115 1ksh_A ARF-like protein 2; sma 99.6 3E-14 1E-18 118.9 16.0 152 62-288 18-179 (186)
116 2y8e_A RAB-protein 6, GH09086P 99.6 2.1E-14 7.3E-19 118.5 14.7 154 63-289 15-177 (179)
117 4dsu_A GTPase KRAS, isoform 2B 99.6 3.7E-14 1.3E-18 118.2 16.3 153 63-288 5-165 (189)
118 1f6b_A SAR1; gtpases, N-termin 99.6 1.4E-14 4.9E-19 122.8 13.8 150 63-287 26-197 (198)
119 1wms_A RAB-9, RAB9, RAS-relate 99.6 6.2E-14 2.1E-18 115.7 17.1 156 63-287 8-172 (177)
120 2fn4_A P23, RAS-related protei 99.6 4.4E-14 1.5E-18 116.8 16.1 153 63-288 10-171 (181)
121 1g16_A RAS-related protein SEC 99.6 3.5E-14 1.2E-18 116.2 15.2 152 63-287 4-163 (170)
122 1fzq_A ADP-ribosylation factor 99.6 4.6E-14 1.6E-18 117.8 16.2 151 62-288 16-177 (181)
123 1z2a_A RAS-related protein RAB 99.6 2.5E-14 8.6E-19 116.8 14.2 151 63-287 6-165 (168)
124 2q3h_A RAS homolog gene family 99.6 3.1E-14 1.1E-18 120.4 15.2 152 62-287 20-193 (201)
125 1u8z_A RAS-related protein RAL 99.6 4.7E-14 1.6E-18 114.9 15.6 152 63-287 5-165 (168)
126 1moz_A ARL1, ADP-ribosylation 99.6 1.9E-14 6.5E-19 119.6 13.5 151 62-287 18-178 (183)
127 1ek0_A Protein (GTP-binding pr 99.6 6.5E-14 2.2E-18 114.5 16.4 152 63-287 4-167 (170)
128 3cph_A RAS-related protein SEC 99.6 5E-14 1.7E-18 120.1 16.3 154 62-288 20-181 (213)
129 1upt_A ARL1, ADP-ribosylation 99.6 6.4E-14 2.2E-18 114.9 16.3 151 62-287 7-167 (171)
130 2h17_A ADP-ribosylation factor 99.6 2.4E-14 8.3E-19 119.2 14.0 150 62-286 21-180 (181)
131 3t5g_A GTP-binding protein RHE 99.6 5.5E-14 1.9E-18 116.7 16.0 154 63-289 7-169 (181)
132 2bcg_Y Protein YP2, GTP-bindin 99.6 7.2E-14 2.5E-18 118.7 17.1 152 63-287 9-169 (206)
133 1zd9_A ADP-ribosylation factor 99.6 5.4E-14 1.8E-18 117.9 16.0 154 62-289 22-185 (188)
134 2bov_A RAla, RAS-related prote 99.6 7E-14 2.4E-18 118.4 16.8 153 63-288 15-176 (206)
135 2hxs_A RAB-26, RAS-related pro 99.6 5.5E-14 1.9E-18 116.1 15.8 155 63-288 7-172 (178)
136 2b6h_A ADP-ribosylation factor 99.6 5.4E-14 1.8E-18 118.6 16.0 151 62-287 29-189 (192)
137 1zj6_A ADP-ribosylation factor 99.6 7.6E-14 2.6E-18 116.7 16.8 152 63-289 17-178 (187)
138 2bme_A RAB4A, RAS-related prot 99.6 6.1E-14 2.1E-18 116.8 16.1 152 63-287 11-171 (186)
139 4bas_A ADP-ribosylation factor 99.6 5.1E-14 1.7E-18 118.6 15.8 161 62-288 17-188 (199)
140 3reg_A RHO-like small GTPase; 99.6 4.4E-14 1.5E-18 118.9 15.3 151 63-287 24-186 (194)
141 3q85_A GTP-binding protein REM 99.6 4.2E-14 1.4E-18 115.8 14.7 155 63-288 3-166 (169)
142 1kao_A RAP2A; GTP-binding prot 99.6 5.8E-14 2E-18 114.2 15.4 152 63-287 4-164 (167)
143 2fu5_C RAS-related protein RAB 99.6 2.1E-14 7.1E-19 119.5 12.9 152 63-287 9-169 (183)
144 3lvq_E ARF-GAP with SH3 domain 99.6 3.7E-14 1.3E-18 137.0 16.4 154 62-290 322-485 (497)
145 1c1y_A RAS-related protein RAP 99.6 8.9E-14 3.1E-18 113.4 16.3 152 63-287 4-165 (167)
146 2efe_B Small GTP-binding prote 99.6 1.4E-13 4.7E-18 114.0 17.5 154 63-289 13-175 (181)
147 2g6b_A RAS-related protein RAB 99.6 1E-13 3.4E-18 114.8 16.5 153 63-288 11-173 (180)
148 4gzl_A RAS-related C3 botulinu 99.6 3E-14 1E-18 121.3 13.7 83 62-152 30-114 (204)
149 3cbq_A GTP-binding protein REM 99.6 6.3E-14 2.2E-18 118.5 15.5 155 63-288 24-187 (195)
150 3clv_A RAB5 protein, putative; 99.6 1.1E-13 3.7E-18 116.5 16.9 151 62-287 7-202 (208)
151 2a9k_A RAS-related protein RAL 99.6 9.5E-14 3.2E-18 115.4 16.3 152 63-287 19-179 (187)
152 1ky3_A GTP-binding protein YPT 99.6 5.8E-14 2E-18 116.2 14.8 156 63-287 9-176 (182)
153 2il1_A RAB12; G-protein, GDP, 99.6 6.8E-14 2.3E-18 117.8 15.4 152 63-287 27-188 (192)
154 2ew1_A RAS-related protein RAB 99.6 1.2E-13 4.1E-18 117.5 16.9 152 63-287 27-187 (201)
155 1mh1_A RAC1; GTP-binding, GTPa 99.6 5.8E-14 2E-18 116.7 14.5 152 63-288 6-179 (186)
156 1vg8_A RAS-related protein RAB 99.6 6.9E-14 2.4E-18 118.6 15.1 156 63-287 9-173 (207)
157 2atx_A Small GTP binding prote 99.6 1.2E-13 4E-18 116.2 16.3 150 63-287 19-191 (194)
158 1z0j_A RAB-22, RAS-related pro 99.6 1.4E-13 4.8E-18 112.5 16.4 151 63-288 7-168 (170)
159 1z08_A RAS-related protein RAB 99.6 8.3E-14 2.8E-18 114.0 15.0 152 63-287 7-167 (170)
160 3bc1_A RAS-related protein RAB 99.6 1E-13 3.4E-18 115.9 15.7 153 63-287 12-183 (195)
161 2ce2_X GTPase HRAS; signaling 99.6 2.8E-13 9.7E-18 109.9 17.9 152 63-287 4-163 (166)
162 1pui_A ENGB, probable GTP-bind 99.6 2.2E-14 7.6E-19 122.2 11.4 159 57-289 21-199 (210)
163 1r2q_A RAS-related protein RAB 99.5 1.8E-13 6.1E-18 111.8 16.2 151 63-288 7-168 (170)
164 1x3s_A RAS-related protein RAB 99.5 2.2E-13 7.5E-18 114.2 17.0 154 63-288 16-177 (195)
165 2a5j_A RAS-related protein RAB 99.5 1.3E-13 4.4E-18 115.8 15.5 152 63-287 22-182 (191)
166 2fg5_A RAB-22B, RAS-related pr 99.5 1.1E-13 3.8E-18 116.4 15.1 151 63-288 24-185 (192)
167 1z0f_A RAB14, member RAS oncog 99.5 2.9E-13 1E-17 111.6 17.4 151 63-287 16-176 (179)
168 2gf9_A RAS-related protein RAB 99.5 1.9E-13 6.5E-18 114.5 16.4 152 63-287 23-183 (189)
169 2hup_A RAS-related protein RAB 99.5 1.2E-13 4E-18 117.3 15.1 152 63-287 30-191 (201)
170 3con_A GTPase NRAS; structural 99.5 2.3E-13 8E-18 113.8 16.8 153 63-288 22-182 (190)
171 2cxx_A Probable GTP-binding pr 99.5 4.9E-14 1.7E-18 117.7 12.6 162 64-288 3-183 (190)
172 2j1l_A RHO-related GTP-binding 99.5 8.7E-14 3E-18 119.3 14.5 150 63-287 35-207 (214)
173 2www_A Methylmalonic aciduria 99.5 4.1E-15 1.4E-19 137.4 6.0 50 239-288 213-278 (349)
174 2qm8_A GTPase/ATPase; G protei 99.5 7.9E-15 2.7E-19 134.8 7.8 33 55-87 48-80 (337)
175 2o52_A RAS-related protein RAB 99.5 1.4E-13 4.7E-18 116.8 14.9 152 63-287 26-186 (200)
176 2qnr_A Septin-2, protein NEDD5 99.5 1.4E-15 4.9E-20 137.7 2.7 90 171-287 108-212 (301)
177 1zbd_A Rabphilin-3A; G protein 99.5 3.5E-13 1.2E-17 114.0 17.4 152 63-287 9-169 (203)
178 3q72_A GTP-binding protein RAD 99.5 2E-13 6.7E-18 111.5 15.3 150 63-287 3-162 (166)
179 2f7s_A C25KG, RAS-related prot 99.5 1.2E-13 4E-18 118.3 14.5 153 63-287 26-197 (217)
180 2fv8_A H6, RHO-related GTP-bin 99.5 1.2E-13 4.2E-18 117.6 14.5 82 63-152 26-109 (207)
181 2iwr_A Centaurin gamma 1; ANK 99.5 3.8E-13 1.3E-17 111.2 16.8 148 63-287 8-167 (178)
182 1e69_A Chromosome segregation 99.5 3.3E-15 1.1E-19 136.6 4.6 62 170-231 213-290 (322)
183 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.7E-15 5.8E-20 140.8 2.7 57 171-227 274-349 (365)
184 3cpj_B GTP-binding protein YPT 99.5 2.3E-13 7.9E-18 117.3 15.8 153 63-288 14-175 (223)
185 3bwd_D RAC-like GTP-binding pr 99.5 4.1E-14 1.4E-18 117.4 10.6 151 62-287 8-179 (182)
186 1wb1_A Translation elongation 99.5 9.4E-14 3.2E-18 133.6 14.7 149 63-288 20-188 (482)
187 2oil_A CATX-8, RAS-related pro 99.5 3.6E-13 1.2E-17 113.0 16.6 152 63-287 26-186 (193)
188 2gco_A H9, RHO-related GTP-bin 99.5 2.5E-13 8.5E-18 115.1 15.7 82 63-152 26-109 (201)
189 2x77_A ADP-ribosylation factor 99.5 9.9E-14 3.4E-18 116.1 12.7 152 62-288 22-183 (189)
190 1oix_A RAS-related protein RAB 99.5 2.2E-13 7.5E-18 114.7 14.8 152 63-287 30-190 (191)
191 2nzj_A GTP-binding protein REM 99.5 2.6E-13 8.8E-18 111.6 14.9 153 63-287 5-167 (175)
192 3kkq_A RAS-related protein M-R 99.5 8E-13 2.7E-17 109.8 17.9 152 63-287 19-180 (183)
193 1z06_A RAS-related protein RAB 99.5 6.2E-13 2.1E-17 111.3 16.7 154 63-287 21-186 (189)
194 3ihw_A Centg3; RAS, centaurin, 99.5 6.8E-13 2.3E-17 111.1 16.7 146 63-287 21-178 (184)
195 2j0v_A RAC-like GTP-binding pr 99.5 1.8E-13 6.3E-18 116.7 13.5 152 63-288 10-179 (212)
196 3izq_1 HBS1P, elongation facto 99.5 6.7E-14 2.3E-18 138.1 12.1 83 62-151 167-280 (611)
197 2f9l_A RAB11B, member RAS onco 99.5 4.2E-13 1.4E-17 113.6 15.5 152 63-287 6-166 (199)
198 2erx_A GTP-binding protein DI- 99.5 3.1E-13 1E-17 110.6 14.2 154 63-288 4-166 (172)
199 3l0i_B RAS-related protein RAB 99.5 1.3E-14 4.6E-19 122.8 6.1 153 63-288 34-195 (199)
200 2p5s_A RAS and EF-hand domain 99.5 4.8E-13 1.6E-17 113.1 15.7 154 62-288 28-196 (199)
201 3t5d_A Septin-7; GTP-binding p 99.5 1.3E-13 4.4E-18 123.1 12.7 59 63-121 9-77 (274)
202 3r7w_A Gtpase1, GTP-binding pr 99.5 3.3E-13 1.1E-17 122.5 15.4 89 62-152 3-93 (307)
203 3oes_A GTPase rhebl1; small GT 99.5 1.1E-13 3.9E-18 117.2 11.4 155 62-289 24-187 (201)
204 3t1o_A Gliding protein MGLA; G 99.5 3E-13 1E-17 113.4 13.7 153 63-287 15-190 (198)
205 3gj0_A GTP-binding nuclear pro 99.5 3.3E-14 1.1E-18 122.4 7.8 151 63-287 16-173 (221)
206 3o47_A ADP-ribosylation factor 99.5 4.9E-13 1.7E-17 122.5 15.8 152 62-288 165-326 (329)
207 2atv_A RERG, RAS-like estrogen 99.5 7.3E-13 2.5E-17 111.6 15.6 152 62-287 28-189 (196)
208 3sjy_A Translation initiation 99.5 7.3E-13 2.5E-17 124.7 17.1 152 62-288 8-191 (403)
209 2gf0_A GTP-binding protein DI- 99.5 1.1E-12 3.7E-17 110.4 16.2 157 62-290 8-172 (199)
210 3c5c_A RAS-like protein 12; GD 99.5 1.6E-12 5.3E-17 109.0 17.0 154 62-287 21-184 (187)
211 2fh5_B SR-beta, signal recogni 99.5 6.7E-13 2.3E-17 113.3 15.1 80 62-151 7-90 (214)
212 3j2k_7 ERF3, eukaryotic polype 99.5 4.8E-13 1.6E-17 127.2 15.5 84 62-152 17-131 (439)
213 1m7b_A RND3/RHOE small GTP-bin 99.5 6.9E-13 2.3E-17 110.6 14.4 82 63-152 8-91 (184)
214 3tr5_A RF-3, peptide chain rel 99.5 2.5E-13 8.5E-18 131.8 13.3 83 63-152 14-118 (528)
215 2aka_B Dynamin-1; fusion prote 99.5 1.8E-14 6.2E-19 129.7 4.8 49 238-286 192-250 (299)
216 3q3j_B RHO-related GTP-binding 99.5 5.9E-13 2E-17 114.2 14.0 153 62-288 27-202 (214)
217 3dz8_A RAS-related protein RAB 99.5 2.9E-13 9.9E-18 113.6 11.8 153 62-287 23-184 (191)
218 2yc2_C IFT27, small RAB-relate 99.5 1.2E-13 4.3E-18 116.9 9.5 156 62-287 20-190 (208)
219 2zej_A Dardarin, leucine-rich 99.5 2.9E-13 9.9E-18 113.1 11.6 154 63-289 3-178 (184)
220 2g3y_A GTP-binding protein GEM 99.5 1.7E-12 5.8E-17 111.4 16.2 154 63-287 38-201 (211)
221 4djt_A GTP-binding nuclear pro 99.5 9.2E-13 3.2E-17 112.8 13.7 152 63-288 12-174 (218)
222 1gwn_A RHO-related GTP-binding 99.5 1.2E-12 4.2E-17 111.5 14.3 82 63-152 29-112 (205)
223 2cjw_A GTP-binding protein GEM 99.4 4E-12 1.4E-16 107.1 16.9 154 63-287 7-170 (192)
224 1ye8_A Protein THEP1, hypothet 99.4 3.2E-14 1.1E-18 119.0 3.7 53 170-222 70-139 (178)
225 1znw_A Guanylate kinase, GMP k 99.4 1.8E-14 6.3E-19 123.2 1.9 30 58-87 16-45 (207)
226 1z6g_A Guanylate kinase; struc 99.4 1.9E-14 6.4E-19 124.3 2.0 128 53-202 14-162 (218)
227 2j69_A Bacterial dynamin-like 99.4 5E-13 1.7E-17 133.9 11.9 88 61-152 68-213 (695)
228 2wkq_A NPH1-1, RAS-related C3 99.4 1.3E-12 4.4E-17 118.9 13.4 82 63-152 156-239 (332)
229 1kk1_A EIF2gamma; initiation o 99.4 4.7E-12 1.6E-16 119.4 17.5 151 63-288 11-199 (410)
230 3p26_A Elongation factor 1 alp 99.4 9.8E-13 3.4E-17 126.6 12.2 83 63-152 34-147 (483)
231 1jwy_B Dynamin A GTPase domain 99.4 8.4E-13 2.9E-17 119.7 11.0 52 238-289 198-262 (315)
232 2p67_A LAO/AO transport system 99.4 1.8E-13 6.3E-18 125.9 5.7 50 239-288 195-260 (341)
233 2elf_A Protein translation elo 99.4 3.6E-12 1.2E-16 118.5 13.9 70 64-148 23-92 (370)
234 2c78_A Elongation factor TU-A; 99.4 5E-12 1.7E-16 119.0 14.9 84 62-152 11-111 (405)
235 3th5_A RAS-related C3 botulinu 99.1 3.5E-14 1.2E-18 120.6 0.0 82 62-151 30-113 (204)
236 1s0u_A EIF-2-gamma, translatio 99.4 9.2E-12 3.1E-16 117.3 16.3 152 62-288 8-197 (408)
237 3izy_P Translation initiation 99.4 1.7E-13 5.8E-18 132.7 4.5 151 62-289 4-168 (537)
238 3def_A T7I23.11 protein; chlor 99.4 6.9E-12 2.3E-16 111.1 14.4 87 63-149 37-126 (262)
239 2qag_C Septin-7; cell cycle, c 99.4 2.1E-12 7.3E-17 121.5 11.5 80 184-289 138-227 (418)
240 3llu_A RAS-related GTP-binding 99.4 1.6E-11 5.5E-16 103.5 15.1 84 62-152 20-108 (196)
241 1h65_A Chloroplast outer envel 99.3 1.2E-11 4.3E-16 109.9 14.5 87 63-149 40-129 (270)
242 2pt7_A CAG-ALFA; ATPase, prote 99.3 3.1E-13 1.1E-17 123.8 3.6 112 55-233 164-285 (330)
243 3mca_A HBS1, elongation factor 99.3 2.4E-13 8.4E-18 133.7 2.9 82 63-151 178-290 (592)
244 3szr_A Interferon-induced GTP- 99.3 2.2E-12 7.6E-17 127.4 9.5 159 64-255 47-231 (608)
245 3dpu_A RAB family protein; roc 99.3 1.7E-12 5.7E-17 126.6 8.4 150 63-289 42-208 (535)
246 1zun_B Sulfate adenylate trans 99.3 2.3E-11 7.9E-16 115.5 15.6 83 63-152 25-140 (434)
247 2x2e_A Dynamin-1; nitration, h 99.3 2.4E-12 8.1E-17 119.0 8.2 48 238-285 197-254 (353)
248 3qkt_A DNA double-strand break 99.3 2.4E-12 8.1E-17 118.4 7.0 60 171-230 243-321 (339)
249 2ywe_A GTP-binding protein LEP 99.3 3.3E-11 1.1E-15 118.2 15.4 150 63-289 7-184 (600)
250 1d2e_A Elongation factor TU (E 99.3 5.2E-11 1.8E-15 111.8 16.2 83 63-152 4-102 (397)
251 3p32_A Probable GTPase RV1496/ 99.3 1.6E-11 5.5E-16 113.5 12.2 50 239-288 218-283 (355)
252 4dkx_A RAS-related protein RAB 99.3 9E-11 3.1E-15 101.0 16.0 154 63-289 14-176 (216)
253 3cb4_D GTP-binding protein LEP 99.3 2.5E-11 8.5E-16 119.2 13.7 149 63-288 5-181 (599)
254 2obl_A ESCN; ATPase, hydrolase 99.3 1.3E-12 4.4E-17 120.3 3.8 150 54-233 64-237 (347)
255 3aez_A Pantothenate kinase; tr 99.3 4.1E-12 1.4E-16 115.4 5.9 112 60-200 88-209 (312)
256 1jny_A EF-1-alpha, elongation 99.2 2.4E-11 8.4E-16 115.3 11.0 82 63-151 7-119 (435)
257 3thx_B DNA mismatch repair pro 99.2 1.4E-12 5E-17 133.2 2.6 60 174-233 733-806 (918)
258 3zvr_A Dynamin-1; hydrolase, D 99.2 1E-11 3.5E-16 124.3 8.6 48 238-285 217-274 (772)
259 1zo1_I IF2, translation initia 99.2 1.9E-12 6.7E-17 124.3 3.3 83 62-151 4-86 (501)
260 3t34_A Dynamin-related protein 99.2 1.6E-11 5.4E-16 113.8 9.3 24 63-86 35-58 (360)
261 2qpt_A EH domain-containing pr 99.2 9.6E-11 3.3E-15 114.3 14.5 90 62-151 65-200 (550)
262 2dy1_A Elongation factor G; tr 99.2 1.1E-10 3.6E-15 116.5 15.1 86 59-151 6-109 (665)
263 1f60_A Elongation factor EEF1A 99.2 3.4E-11 1.2E-15 115.1 10.9 82 63-151 8-120 (458)
264 2xex_A Elongation factor G; GT 99.2 1.4E-10 4.7E-15 116.1 15.4 83 63-152 11-111 (693)
265 2ged_A SR-beta, signal recogni 99.2 9E-11 3.1E-15 98.2 11.6 79 62-150 48-129 (193)
266 3thx_A DNA mismatch repair pro 99.2 1.1E-11 3.7E-16 127.0 7.1 45 189-233 745-795 (934)
267 1dar_A EF-G, elongation factor 99.2 2.9E-10 1E-14 113.8 16.8 83 63-152 13-113 (691)
268 2h5e_A Peptide chain release f 99.2 3.6E-10 1.2E-14 109.6 16.3 83 63-152 14-118 (529)
269 3b9q_A Chloroplast SRP recepto 99.2 1.2E-12 4E-17 118.5 -1.3 46 54-110 92-137 (302)
270 2dpy_A FLII, flagellum-specifi 99.2 3.5E-12 1.2E-16 121.0 1.9 149 54-233 150-326 (438)
271 2qag_A Septin-2, protein NEDD5 99.2 6E-11 2.1E-15 109.9 9.4 57 64-120 39-106 (361)
272 2eyu_A Twitching motility prot 99.2 1.3E-11 4.4E-16 109.3 4.6 120 59-232 22-142 (261)
273 3c5h_A Glucocorticoid receptor 99.2 1.6E-10 5.6E-15 101.8 11.0 50 238-287 198-253 (255)
274 1tf7_A KAIC; homohexamer, hexa 99.2 6.1E-13 2.1E-17 129.3 -5.1 145 53-225 29-187 (525)
275 1g7s_A Translation initiation 99.1 2.7E-10 9.3E-15 111.8 12.8 82 62-151 5-105 (594)
276 1r5b_A Eukaryotic peptide chai 99.1 1.3E-10 4.4E-15 111.3 8.5 83 63-152 44-157 (467)
277 2og2_A Putative signal recogni 99.1 3.5E-12 1.2E-16 117.7 -2.4 46 54-110 149-194 (359)
278 3avx_A Elongation factor TS, e 99.1 1E-09 3.4E-14 113.5 14.9 83 63-152 297-395 (1289)
279 3ec1_A YQEH GTPase; atnos1, at 99.1 1.3E-10 4.6E-15 107.9 6.8 85 62-149 162-255 (369)
280 2ehv_A Hypothetical protein PH 99.1 4.6E-12 1.6E-16 110.6 -3.1 27 59-85 27-55 (251)
281 2v9p_A Replication protein E1; 99.0 3.9E-11 1.3E-15 108.2 1.8 33 54-86 118-150 (305)
282 2i3b_A HCR-ntpase, human cance 99.0 9.9E-11 3.4E-15 98.6 3.8 26 62-87 1-26 (189)
283 3vqt_A RF-3, peptide chain rel 99.0 4.9E-09 1.7E-13 102.1 16.1 99 63-168 32-153 (548)
284 3asz_A Uridine kinase; cytidin 99.0 3.9E-11 1.3E-15 102.3 0.7 28 60-87 4-31 (211)
285 2rdo_7 EF-G, elongation factor 99.0 5.4E-09 1.8E-13 104.8 16.3 84 62-152 10-118 (704)
286 1nrj_B SR-beta, signal recogni 99.0 1.5E-09 5.2E-14 92.6 10.5 78 62-150 12-93 (218)
287 2wsm_A Hydrogenase expression/ 99.0 1.8E-10 6.3E-15 98.6 4.6 52 238-289 154-214 (221)
288 2qag_B Septin-6, protein NEDD5 99.0 1E-09 3.6E-14 103.0 9.6 34 53-86 31-66 (427)
289 3h2y_A GTPase family protein; 99.0 5.8E-10 2E-14 103.5 7.5 58 62-122 160-224 (368)
290 1tf7_A KAIC; homohexamer, hexa 99.0 1.9E-10 6.4E-15 111.8 4.2 121 58-223 277-417 (525)
291 2jeo_A Uridine-cytidine kinase 99.0 4.5E-10 1.5E-14 98.3 6.0 147 53-229 16-172 (245)
292 1f2t_B RAD50 ABC-ATPase; DNA d 99.0 1.5E-10 5.2E-15 93.5 2.6 59 170-228 51-128 (148)
293 1ewq_A DNA mismatch repair pro 98.9 2.8E-11 9.6E-16 121.8 -3.8 41 189-229 659-704 (765)
294 1cr0_A DNA primase/helicase; R 98.9 4.4E-11 1.5E-15 107.6 -2.2 35 54-88 27-61 (296)
295 2o8b_B DNA mismatch repair pro 98.9 1.5E-10 5.2E-15 119.9 1.4 39 189-227 872-916 (1022)
296 2o5v_A DNA replication and rep 98.9 4.2E-09 1.4E-13 97.2 10.3 51 172-222 260-330 (359)
297 4a74_A DNA repair and recombin 98.9 1.2E-09 4E-14 93.9 6.2 30 59-88 22-51 (231)
298 1wb9_A DNA mismatch repair pro 98.9 2.3E-10 7.9E-15 115.8 1.2 33 53-86 599-631 (800)
299 2rcn_A Probable GTPase ENGC; Y 98.9 9.8E-11 3.4E-15 107.8 -2.3 93 61-188 214-325 (358)
300 1s96_A Guanylate kinase, GMP k 98.9 1.4E-09 4.7E-14 93.7 5.1 29 60-88 14-42 (219)
301 1yrb_A ATP(GTP)binding protein 98.9 2.5E-08 8.6E-13 87.5 13.2 51 238-288 171-256 (262)
302 1nlf_A Regulatory protein REPA 98.9 1.2E-09 4.2E-14 97.3 4.6 138 59-224 27-182 (279)
303 2f1r_A Molybdopterin-guanine d 98.8 4.2E-10 1.4E-14 93.2 0.5 42 63-115 3-47 (171)
304 1puj_A YLQF, conserved hypothe 98.8 2.9E-09 9.9E-14 95.2 5.7 58 62-122 120-178 (282)
305 1htw_A HI0065; nucleotide-bind 98.8 3.8E-10 1.3E-14 92.2 -0.4 45 55-111 26-70 (158)
306 1n0u_A EF-2, elongation factor 98.8 1.8E-08 6E-13 103.0 11.7 83 63-152 20-134 (842)
307 3jvv_A Twitching mobility prot 98.8 2.5E-09 8.4E-14 98.7 4.3 42 189-233 200-241 (356)
308 2ewv_A Twitching motility prot 98.8 1.8E-09 6.3E-14 100.3 3.2 121 59-233 133-254 (372)
309 1f5n_A Interferon-induced guan 98.8 1.5E-08 5E-13 99.1 9.6 60 63-123 39-105 (592)
310 1lw7_A Transcriptional regulat 98.8 9.3E-11 3.2E-15 108.8 -5.7 34 55-88 161-196 (365)
311 3pih_A Uvrabc system protein A 98.8 1.4E-09 4.9E-14 111.0 1.4 72 159-230 444-533 (916)
312 3j25_A Tetracycline resistance 98.8 1.2E-08 4E-13 101.3 7.8 97 64-167 4-119 (638)
313 1u0l_A Probable GTPase ENGC; p 98.7 2.1E-09 7.1E-14 97.1 2.2 109 58-179 165-294 (301)
314 2yv5_A YJEQ protein; hydrolase 98.7 7.8E-10 2.7E-14 99.9 -0.9 123 60-187 163-298 (302)
315 2r6f_A Excinuclease ABC subuni 98.7 2.2E-09 7.4E-14 109.4 1.1 71 161-231 486-574 (972)
316 2hf9_A Probable hydrogenase ni 98.7 2.2E-08 7.7E-13 85.8 7.3 50 239-288 165-223 (226)
317 2ygr_A Uvrabc system protein A 98.7 2.7E-09 9.2E-14 109.1 1.2 70 162-231 504-591 (993)
318 1pzn_A RAD51, DNA repair and r 98.7 2E-08 6.9E-13 92.4 6.2 29 58-86 127-155 (349)
319 3r7w_B Gtpase2, GTP-binding pr 98.6 1.6E-07 5.6E-12 85.1 11.4 84 64-152 1-85 (331)
320 2vf7_A UVRA2, excinuclease ABC 98.6 5.2E-09 1.8E-13 106.1 1.0 70 162-231 362-449 (842)
321 2j37_W Signal recognition part 98.6 3.5E-08 1.2E-12 94.8 6.2 22 62-83 101-122 (504)
322 1nij_A Hypothetical protein YJ 98.6 1.3E-08 4.4E-13 92.6 2.8 46 63-111 5-50 (318)
323 1p9r_A General secretion pathw 98.6 4E-08 1.4E-12 92.4 5.2 41 60-111 165-205 (418)
324 2w0m_A SSO2452; RECA, SSPF, un 98.6 6.9E-08 2.4E-12 82.7 6.1 30 59-88 20-49 (235)
325 3kta_B Chromosome segregation 98.6 9.7E-09 3.3E-13 85.0 0.6 57 171-227 59-131 (173)
326 3cnl_A YLQF, putative uncharac 98.6 3.6E-08 1.2E-12 87.1 4.2 57 63-122 100-157 (262)
327 3ney_A 55 kDa erythrocyte memb 98.5 2.1E-08 7E-13 84.7 2.2 55 60-116 17-73 (197)
328 2bbw_A Adenylate kinase 4, AK4 98.5 1.3E-08 4.4E-13 88.9 0.8 27 62-88 27-56 (246)
329 3euj_A Chromosome partition pr 98.5 1.1E-08 3.9E-13 97.5 0.3 47 53-111 21-67 (483)
330 3lnc_A Guanylate kinase, GMP k 98.5 1.4E-08 4.6E-13 87.9 0.6 50 53-102 18-69 (231)
331 3a00_A Guanylate kinase, GMP k 98.5 2.6E-08 8.9E-13 83.2 1.3 48 62-111 1-50 (186)
332 1lvg_A Guanylate kinase, GMP k 98.5 2.6E-08 8.8E-13 84.2 0.9 51 61-113 3-55 (198)
333 1sxj_E Activator 1 40 kDa subu 98.4 3.9E-07 1.3E-11 83.4 8.3 130 64-224 38-175 (354)
334 1t9h_A YLOQ, probable GTPase E 98.4 5.1E-08 1.7E-12 88.0 2.0 59 59-121 170-236 (307)
335 1kgd_A CASK, peripheral plasma 98.4 7.1E-08 2.4E-12 80.1 2.7 51 61-113 4-56 (180)
336 2cvh_A DNA repair and recombin 98.4 2.7E-07 9.1E-12 78.5 5.8 25 60-84 18-42 (220)
337 4fn5_A EF-G 1, elongation fact 98.4 4.3E-06 1.5E-10 83.9 14.4 99 63-168 14-138 (709)
338 2gza_A Type IV secretion syste 98.4 5.8E-08 2E-12 89.8 0.6 44 54-108 167-210 (361)
339 1zp6_A Hypothetical protein AT 98.3 2.9E-07 1E-11 76.6 4.3 39 59-110 6-44 (191)
340 3tr0_A Guanylate kinase, GMP k 98.3 2.4E-07 8.3E-12 78.0 3.5 29 58-86 3-31 (205)
341 2kjq_A DNAA-related protein; s 98.3 3.1E-06 1.1E-10 68.1 9.7 28 61-88 35-62 (149)
342 1odf_A YGR205W, hypothetical 3 98.3 1.2E-07 4.1E-12 85.0 1.4 27 62-88 31-57 (290)
343 4ad8_A DNA repair protein RECN 98.3 1.5E-07 5.1E-12 91.2 1.8 56 173-228 393-463 (517)
344 2yhs_A FTSY, cell division pro 98.3 1E-07 3.6E-12 90.8 0.7 46 53-109 284-329 (503)
345 2x8a_A Nuclear valosin-contain 98.3 7.5E-08 2.6E-12 85.6 -0.4 24 65-88 47-70 (274)
346 3c8u_A Fructokinase; YP_612366 98.3 2.1E-07 7.3E-12 79.0 2.3 40 62-109 22-61 (208)
347 1rj9_A FTSY, signal recognitio 98.3 2E-07 6.9E-12 84.1 1.8 39 61-110 101-139 (304)
348 3q5d_A Atlastin-1; G protein, 98.2 2.7E-06 9.2E-11 80.4 8.9 60 63-122 68-153 (447)
349 1ls1_A Signal recognition part 98.2 1.4E-06 4.9E-11 78.1 6.7 33 54-88 92-124 (295)
350 1in4_A RUVB, holliday junction 98.2 9.1E-07 3.1E-11 80.8 4.2 24 63-86 52-75 (334)
351 1vma_A Cell division protein F 98.2 1.4E-06 4.7E-11 78.6 5.3 33 56-88 98-130 (306)
352 3e70_C DPA, signal recognition 98.2 3.1E-07 1.1E-11 83.7 1.0 40 60-110 127-166 (328)
353 3dm5_A SRP54, signal recogniti 98.1 6.6E-06 2.3E-10 77.6 9.2 25 62-86 100-124 (443)
354 1sq5_A Pantothenate kinase; P- 98.1 7.5E-07 2.6E-11 80.4 2.4 35 61-106 79-115 (308)
355 1qhl_A Protein (cell division 98.1 4.3E-08 1.5E-12 84.7 -5.6 43 57-111 23-65 (227)
356 3auy_A DNA double-strand break 98.1 8.2E-07 2.8E-11 82.3 2.5 57 172-228 276-351 (371)
357 3tau_A Guanylate kinase, GMP k 98.1 1.2E-06 3.9E-11 74.5 3.1 43 61-103 7-51 (208)
358 2oap_1 GSPE-2, type II secreti 98.1 5.9E-07 2E-11 86.6 1.1 42 57-109 255-296 (511)
359 2v3c_C SRP54, signal recogniti 98.1 1.2E-06 4.1E-11 82.8 2.7 25 62-86 99-123 (432)
360 2eki_A DRG 1, developmentally- 98.0 1.5E-06 5E-11 63.2 1.9 33 284-316 6-39 (93)
361 3kta_A Chromosome segregation 98.0 3.6E-06 1.2E-10 69.5 4.2 35 53-88 18-52 (182)
362 2j41_A Guanylate kinase; GMP, 98.0 4.1E-06 1.4E-10 70.3 4.2 30 59-88 3-32 (207)
363 2bdt_A BH3686; alpha-beta prot 98.0 2E-06 6.9E-11 71.5 1.8 23 62-84 2-24 (189)
364 3kl4_A SRP54, signal recogniti 98.0 1.4E-05 4.7E-10 75.3 7.6 27 61-87 96-122 (433)
365 4e22_A Cytidylate kinase; P-lo 97.8 1.7E-06 6E-11 75.7 -0.6 28 61-88 26-56 (252)
366 1w1w_A Structural maintenance 97.8 2.3E-06 7.9E-11 80.8 -0.0 54 174-227 331-401 (430)
367 4eun_A Thermoresistant glucoki 97.8 8.9E-06 3E-10 68.4 3.4 27 60-86 27-53 (200)
368 1j8m_F SRP54, signal recogniti 97.8 2.3E-05 7.7E-10 70.3 6.0 33 55-88 92-124 (297)
369 3vaa_A Shikimate kinase, SK; s 97.8 1.3E-05 4.6E-10 67.2 3.4 35 52-86 15-49 (199)
370 2ius_A DNA translocase FTSK; n 97.7 4E-06 1.4E-10 80.5 -0.3 33 52-84 157-189 (512)
371 1kag_A SKI, shikimate kinase I 97.7 1.6E-05 5.4E-10 64.8 3.0 26 62-87 4-29 (173)
372 1ex7_A Guanylate kinase; subst 97.7 1E-05 3.6E-10 67.5 1.5 49 65-115 4-54 (186)
373 3uie_A Adenylyl-sulfate kinase 97.7 1.9E-05 6.7E-10 66.2 3.2 27 61-87 24-50 (200)
374 3ec2_A DNA replication protein 97.7 1E-05 3.6E-10 66.6 1.5 27 62-88 38-64 (180)
375 2vp4_A Deoxynucleoside kinase; 97.6 2E-05 6.7E-10 67.8 2.9 25 61-85 19-43 (230)
376 1rz3_A Hypothetical protein rb 97.6 1.4E-05 4.6E-10 67.4 1.6 27 62-88 22-48 (201)
377 2qor_A Guanylate kinase; phosp 97.6 1.3E-05 4.5E-10 67.5 1.4 43 61-103 11-55 (204)
378 1knq_A Gluconate kinase; ALFA/ 97.6 2.8E-05 9.6E-10 63.6 3.2 26 61-86 7-32 (175)
379 3cr8_A Sulfate adenylyltranfer 97.4 3.4E-05 1.2E-09 74.9 1.2 29 60-88 367-395 (552)
380 1w1w_A Structural maintenance 97.4 8.2E-05 2.8E-09 70.1 3.8 32 57-88 21-52 (430)
381 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.00011 3.7E-09 58.9 3.8 29 55-84 17-45 (149)
382 2qt1_A Nicotinamide riboside k 97.4 9.8E-05 3.4E-09 62.1 3.6 27 60-86 19-45 (207)
383 1svm_A Large T antigen; AAA+ f 97.4 3.9E-05 1.3E-09 71.0 1.1 31 55-85 162-192 (377)
384 1n0w_A DNA repair protein RAD5 97.4 0.00011 3.7E-09 63.0 3.8 27 59-85 21-47 (243)
385 1cke_A CK, MSSA, protein (cyti 97.3 9.3E-05 3.2E-09 63.0 3.3 25 62-86 5-29 (227)
386 3nwj_A ATSK2; P loop, shikimat 97.3 2.8E-05 9.6E-10 68.0 -0.4 33 54-86 37-72 (250)
387 2pez_A Bifunctional 3'-phospho 97.3 9.1E-05 3.1E-09 60.8 2.7 27 61-87 4-30 (179)
388 1jjv_A Dephospho-COA kinase; P 97.3 0.00011 3.8E-09 61.6 3.2 21 64-84 4-24 (206)
389 1zu4_A FTSY; GTPase, signal re 97.3 3.1E-05 1.1E-09 70.2 -0.3 35 54-88 97-131 (320)
390 3tqc_A Pantothenate kinase; bi 97.3 9.5E-05 3.2E-09 66.9 2.9 25 63-87 93-117 (321)
391 1ixz_A ATP-dependent metallopr 97.3 5.4E-05 1.8E-09 65.8 1.0 22 65-86 52-73 (254)
392 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4.1E-09 61.3 3.0 21 64-84 3-23 (204)
393 1puj_A YLQF, conserved hypothe 97.2 0.00044 1.5E-08 61.4 6.5 51 238-288 50-105 (282)
394 2px0_A Flagellar biosynthesis 97.2 8.8E-05 3E-09 66.4 1.7 28 61-88 104-131 (296)
395 1iy2_A ATP-dependent metallopr 97.2 7.1E-05 2.4E-09 66.1 1.0 22 65-86 76-97 (278)
396 1y63_A LMAJ004144AAA protein; 97.1 0.00027 9.3E-09 58.3 3.1 30 56-85 4-33 (184)
397 4eaq_A DTMP kinase, thymidylat 97.1 0.00024 8.4E-09 61.0 2.9 28 60-87 24-51 (229)
398 1m7g_A Adenylylsulfate kinase; 97.0 0.00018 6.2E-09 60.8 1.7 27 62-88 25-51 (211)
399 1np6_A Molybdopterin-guanine d 97.0 0.00025 8.7E-09 58.3 2.5 25 63-87 7-31 (174)
400 3lda_A DNA repair protein RAD5 97.0 0.00041 1.4E-08 64.7 4.1 29 59-87 175-205 (400)
401 3qks_A DNA double-strand break 97.0 0.0004 1.4E-08 58.5 3.6 28 55-83 17-44 (203)
402 3t61_A Gluconokinase; PSI-biol 97.0 0.00033 1.1E-08 58.6 2.9 25 62-86 18-42 (202)
403 2yv5_A YJEQ protein; hydrolase 97.0 0.001 3.4E-08 59.6 6.2 47 238-284 110-164 (302)
404 3m6a_A ATP-dependent protease 96.9 0.00043 1.5E-08 67.2 3.7 28 61-88 107-134 (543)
405 3cm0_A Adenylate kinase; ATP-b 96.9 0.00038 1.3E-08 57.1 2.9 24 62-85 4-27 (186)
406 3kb2_A SPBC2 prophage-derived 96.9 0.00048 1.7E-08 55.6 3.1 23 64-86 3-25 (173)
407 2yvu_A Probable adenylyl-sulfa 96.9 0.00052 1.8E-08 56.5 3.3 27 61-87 12-38 (186)
408 3lw7_A Adenylate kinase relate 96.8 0.00067 2.3E-08 54.6 3.1 20 63-82 2-21 (179)
409 1kht_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 55.2 3.5 25 62-86 3-27 (192)
410 1qhx_A CPT, protein (chloramph 96.7 0.00086 3E-08 54.5 3.5 25 62-86 3-27 (178)
411 1q3t_A Cytidylate kinase; nucl 96.7 0.00091 3.1E-08 57.4 3.4 26 61-86 15-40 (236)
412 2jaq_A Deoxyguanosine kinase; 96.7 0.0009 3.1E-08 55.5 3.2 23 64-86 2-24 (205)
413 1ly1_A Polynucleotide kinase; 96.7 0.00097 3.3E-08 54.1 3.2 22 63-84 3-24 (181)
414 1u0l_A Probable GTPase ENGC; p 96.7 0.0035 1.2E-07 56.0 7.1 47 238-284 115-168 (301)
415 2rhm_A Putative kinase; P-loop 96.6 0.001 3.5E-08 54.8 3.3 25 62-86 5-29 (193)
416 2v54_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 54.8 3.6 25 62-86 4-28 (204)
417 2dr3_A UPF0273 protein PH0284; 96.6 0.0013 4.5E-08 56.2 3.8 27 59-85 20-46 (247)
418 1cip_A Protein (guanine nucleo 96.6 0.0089 3E-07 54.7 9.5 49 96-151 180-228 (353)
419 2plr_A DTMP kinase, probable t 96.6 0.0012 4.2E-08 55.0 3.4 26 62-87 4-29 (213)
420 1zcb_A G alpha I/13; GTP-bindi 96.6 0.011 3.9E-07 54.1 10.0 45 100-151 192-236 (362)
421 1via_A Shikimate kinase; struc 96.5 0.0011 3.9E-08 53.9 2.9 23 64-86 6-28 (175)
422 4ad8_A DNA repair protein RECN 96.5 0.0005 1.7E-08 66.3 0.8 32 53-85 52-83 (517)
423 1vht_A Dephospho-COA kinase; s 96.5 0.0013 4.4E-08 55.5 3.3 23 62-84 4-26 (218)
424 1nks_A Adenylate kinase; therm 96.5 0.0013 4.4E-08 54.0 3.1 23 64-86 3-25 (194)
425 3trf_A Shikimate kinase, SK; a 96.5 0.0015 5E-08 53.6 3.4 25 62-86 5-29 (185)
426 2c95_A Adenylate kinase 1; tra 96.5 0.0015 5.1E-08 53.9 3.4 25 62-86 9-33 (196)
427 2wwf_A Thymidilate kinase, put 96.5 0.0015 5.3E-08 54.6 3.5 25 62-86 10-34 (212)
428 3iij_A Coilin-interacting nucl 96.5 0.0014 4.9E-08 53.5 3.2 24 62-85 11-34 (180)
429 2p5t_B PEZT; postsegregational 96.5 0.00094 3.2E-08 58.1 2.0 25 62-86 32-56 (253)
430 1tev_A UMP-CMP kinase; ploop, 96.4 0.0017 5.8E-08 53.3 3.3 24 62-85 3-26 (196)
431 3k1j_A LON protease, ATP-depen 96.4 0.0019 6.7E-08 63.4 4.3 33 56-88 54-86 (604)
432 1aky_A Adenylate kinase; ATP:A 96.4 0.0018 6.2E-08 54.7 3.6 25 62-86 4-28 (220)
433 1nn5_A Similar to deoxythymidy 96.4 0.0018 6E-08 54.3 3.4 26 61-86 8-33 (215)
434 1gtv_A TMK, thymidylate kinase 96.4 0.00067 2.3E-08 56.9 0.8 24 64-87 2-25 (214)
435 3cnl_A YLQF, putative uncharac 96.4 0.005 1.7E-07 53.9 6.3 48 238-286 46-98 (262)
436 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.9E-08 54.6 3.2 23 64-86 2-24 (216)
437 2ze6_A Isopentenyl transferase 96.4 0.0016 5.6E-08 56.6 3.1 23 64-86 3-25 (253)
438 3r20_A Cytidylate kinase; stru 96.4 0.0018 6.2E-08 55.7 3.2 25 62-86 9-33 (233)
439 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.5E-08 53.5 3.3 24 62-85 8-31 (203)
440 2bwj_A Adenylate kinase 5; pho 96.4 0.0019 6.7E-08 53.3 3.3 25 62-86 12-36 (199)
441 1xjc_A MOBB protein homolog; s 96.3 0.002 6.7E-08 52.7 3.2 25 63-87 5-29 (169)
442 3dl0_A Adenylate kinase; phosp 96.3 0.0019 6.5E-08 54.4 3.2 23 64-86 2-24 (216)
443 3ice_A Transcription terminati 96.3 0.001 3.6E-08 61.3 1.5 33 54-86 166-198 (422)
444 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.3E-08 54.6 3.4 25 62-86 7-31 (227)
445 2z0h_A DTMP kinase, thymidylat 96.3 0.0021 7.1E-08 53.0 3.2 23 64-86 2-24 (197)
446 2ffh_A Protein (FFH); SRP54, s 96.3 0.0012 4.1E-08 62.0 1.8 33 54-88 92-124 (425)
447 1gvn_B Zeta; postsegregational 96.3 0.002 6.8E-08 57.2 3.2 25 62-86 33-57 (287)
448 1lv7_A FTSH; alpha/beta domain 96.3 0.0018 6.2E-08 56.1 2.9 23 64-86 47-69 (257)
449 2cdn_A Adenylate kinase; phosp 96.3 0.0025 8.7E-08 53.0 3.6 25 62-86 20-44 (201)
450 3ec1_A YQEH GTPase; atnos1, at 96.3 0.0058 2E-07 56.3 6.2 52 238-289 98-162 (369)
451 4ido_A Atlastin-1; GTPase, GTP 96.2 0.015 5.2E-07 54.7 9.0 60 63-122 68-153 (457)
452 1zak_A Adenylate kinase; ATP:A 96.2 0.0022 7.7E-08 54.2 3.0 25 62-86 5-29 (222)
453 3auy_A DNA double-strand break 96.2 0.0023 7.7E-08 59.0 3.2 28 55-83 19-46 (371)
454 2vli_A Antibiotic resistance p 96.2 0.002 6.9E-08 52.5 2.5 25 62-86 5-29 (183)
455 3hr8_A Protein RECA; alpha and 96.2 0.0016 5.4E-08 59.7 2.0 28 60-87 59-86 (356)
456 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 52.2 3.2 23 64-86 2-24 (195)
457 2iyv_A Shikimate kinase, SK; t 96.2 0.0025 8.5E-08 52.1 2.9 24 63-86 3-26 (184)
458 3h2y_A GTPase family protein; 96.2 0.0062 2.1E-07 56.0 5.8 51 238-288 96-159 (368)
459 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0016 5.4E-08 62.5 1.8 22 65-86 67-88 (499)
460 2pt5_A Shikimate kinase, SK; a 96.1 0.003 1E-07 50.7 3.2 22 64-85 2-23 (168)
461 1qf9_A UMP/CMP kinase, protein 96.1 0.0029 1E-07 51.8 3.1 23 63-85 7-29 (194)
462 1e6c_A Shikimate kinase; phosp 96.1 0.0028 9.6E-08 51.1 2.9 24 63-86 3-26 (173)
463 3tlx_A Adenylate kinase 2; str 96.1 0.0033 1.1E-07 54.2 3.4 24 62-85 29-52 (243)
464 1ukz_A Uridylate kinase; trans 96.1 0.0033 1.1E-07 52.3 3.2 25 62-86 15-39 (203)
465 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0034 1.2E-07 54.7 3.4 24 62-85 4-27 (260)
466 3be4_A Adenylate kinase; malar 96.1 0.0035 1.2E-07 53.0 3.4 25 62-86 5-29 (217)
467 3ake_A Cytidylate kinase; CMP 96.0 0.0032 1.1E-07 52.4 3.0 23 64-86 4-26 (208)
468 1e4v_A Adenylate kinase; trans 96.0 0.0032 1.1E-07 53.0 3.1 23 64-86 2-24 (214)
469 2xb4_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 53.2 3.2 22 64-85 2-23 (223)
470 4fcw_A Chaperone protein CLPB; 96.0 0.011 3.6E-07 52.5 6.3 25 63-87 48-72 (311)
471 1zuh_A Shikimate kinase; alpha 96.0 0.0042 1.4E-07 50.0 3.3 24 63-86 8-31 (168)
472 4edh_A DTMP kinase, thymidylat 95.9 0.0039 1.3E-07 52.9 3.0 27 61-87 5-31 (213)
473 3sr0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 52.2 3.2 23 64-86 2-24 (206)
474 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0038 1.3E-07 57.0 2.9 23 64-86 26-48 (359)
475 3bos_A Putative DNA replicatio 95.9 0.0047 1.6E-07 52.2 3.4 26 62-87 52-77 (242)
476 3cf0_A Transitional endoplasmi 95.9 0.0045 1.5E-07 55.2 3.3 25 62-86 49-73 (301)
477 3umf_A Adenylate kinase; rossm 95.8 0.0052 1.8E-07 52.2 3.4 25 62-86 29-53 (217)
478 1ak2_A Adenylate kinase isoenz 95.8 0.0056 1.9E-07 52.3 3.6 25 62-86 16-40 (233)
479 1jbk_A CLPB protein; beta barr 95.8 0.0058 2E-07 49.4 3.5 24 63-86 44-67 (195)
480 2grj_A Dephospho-COA kinase; T 95.8 0.0051 1.8E-07 51.2 3.2 24 62-85 12-35 (192)
481 4ag6_A VIRB4 ATPase, type IV s 95.8 0.0031 1.1E-07 58.3 2.0 26 62-87 35-60 (392)
482 1sxj_C Activator 1 40 kDa subu 95.7 0.0043 1.5E-07 56.2 2.7 22 65-86 49-70 (340)
483 1ypw_A Transitional endoplasmi 95.7 0.0033 1.1E-07 63.8 2.2 27 61-87 237-263 (806)
484 2w58_A DNAI, primosome compone 95.7 0.0059 2E-07 50.6 3.3 25 63-87 55-79 (202)
485 3b9p_A CG5977-PA, isoform A; A 95.7 0.0057 1.9E-07 54.0 3.3 25 62-86 54-78 (297)
486 3lv8_A DTMP kinase, thymidylat 95.7 0.0047 1.6E-07 53.2 2.6 27 61-87 26-52 (236)
487 1uj2_A Uridine-cytidine kinase 95.6 0.006 2E-07 52.8 3.2 24 63-86 23-46 (252)
488 2qby_A CDC6 homolog 1, cell di 95.6 0.0057 1.9E-07 55.6 3.0 26 62-87 45-70 (386)
489 2f6r_A COA synthase, bifunctio 95.6 0.0063 2.2E-07 53.7 3.1 23 62-84 75-97 (281)
490 3v9p_A DTMP kinase, thymidylat 95.5 0.004 1.4E-07 53.4 1.6 27 61-87 24-50 (227)
491 1t9h_A YLOQ, probable GTPase E 95.5 0.0074 2.5E-07 54.1 3.3 44 238-281 117-169 (307)
492 4tmk_A Protein (thymidylate ki 95.5 0.0061 2.1E-07 51.6 2.6 26 62-87 3-28 (213)
493 1fnn_A CDC6P, cell division co 95.4 0.0075 2.6E-07 55.1 3.2 25 64-88 46-70 (389)
494 1ltq_A Polynucleotide kinase; 95.4 0.0083 2.8E-07 53.1 3.2 22 63-84 3-24 (301)
495 2p65_A Hypothetical protein PF 95.3 0.0074 2.5E-07 48.7 2.6 24 63-86 44-67 (187)
496 2zr9_A Protein RECA, recombina 95.3 0.01 3.6E-07 54.1 3.8 27 60-86 59-85 (349)
497 2qmh_A HPR kinase/phosphorylas 95.3 0.015 5.2E-07 48.6 4.3 26 61-86 33-58 (205)
498 3gmt_A Adenylate kinase; ssgci 95.2 0.01 3.5E-07 50.8 3.2 25 62-86 8-32 (230)
499 3h4m_A Proteasome-activating n 95.2 0.01 3.5E-07 52.0 3.3 24 63-86 52-75 (285)
500 1sky_E F1-ATPase, F1-ATP synth 95.2 0.01 3.4E-07 56.2 3.3 29 58-86 147-175 (473)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-47 Score=353.85 Aligned_cols=314 Identities=58% Similarity=0.954 Sum_probs=276.4
Q ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCCCCcEEEEeCCcEEEEEcCCCCcHHHHH
Q 021103 2 GIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSS--GAGEGFEVTKFGHGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 2 ~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~valiG~ngaGKSTLl 79 (317)
|++|||+++|++++++|+||||++++.+|++|++++++++.....++. +++.+|.+..++...|||||+|||||||||
T Consensus 10 t~~eki~~ie~~~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~ 89 (376)
T 4a9a_A 10 TTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLL 89 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHH
Confidence 689999999999999999999999999999999999999876554433 335678888888899999999999999999
Q ss_pred HHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHH
Q 021103 80 TLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQIL 159 (317)
Q Consensus 80 n~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~ 159 (317)
|+|+|....+++|||||++|..|.+.+.|.++.++||||+.+....+.+.+.+++..++.+|++++++|+.++..+.+.+
T Consensus 90 n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 90 SKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQII 169 (376)
T ss_dssp HHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHH
T ss_pred HHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHH
Confidence 99999988899999999999999999999999999999999887777888889999999999999999998877777788
Q ss_pred HHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc-ccce
Q 021103 160 TKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKY 238 (317)
Q Consensus 160 ~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~-~~~~ 238 (317)
...|+.+++.+.+++..+....+.+.++.+....|..++|.+.+..++..+......+++.-+.+.+++++.+.. .+.+
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~ 249 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRY 249 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEE
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhc
Confidence 888999998778888887777777888888888899999999999988888777777777778888898888754 5678
Q ss_pred eeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc-cee
Q 021103 239 MKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV-CYI 315 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~-~~v 315 (317)
.|++++.||+|....++++.+.+.+..+++|+..+.|+++|.+.+++.|+.+++||+.|+..++|..|++++++ +||
T Consensus 250 ~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~ 327 (376)
T 4a9a_A 250 MPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSV 327 (376)
T ss_dssp ECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBH
T ss_pred cceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcH
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999987 775
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=9.9e-29 Score=227.97 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=128.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|+..| ++|.|.++|.++...++ -........++++|
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~--~~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNT--NLPVRERRLGYLVQ 87 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSC--BCCGGGSCCEEECT
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECccccc--ccchhhCCEEEEeC
Confidence 478899999999999999999999999999999988 89999999998732111 11112234555555
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 88 ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts 167 (359)
T 3fvq_A 88 EGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFS 167 (359)
T ss_dssp TCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4443333 23333322211 223345678899999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh----cccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHEY----KIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~l----~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....++..+ +..+ ++|++|||.+ +..++ ..++|+++.-+..
T Consensus 168 ~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~a----------Dri~vl~~G~i~~ 219 (359)
T 3fvq_A 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA----------DRIAVMKQGRILQ 219 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHC----------SEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC----------CEEEEEECCEEEE
Confidence 99999866665433 2334 9999999954 33443 4577888776653
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=1.1e-29 Score=222.74 Aligned_cols=177 Identities=19% Similarity=0.161 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+...+........++++|
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 478899999999999999999999999999999988 899999999765211100000000001111122
Q ss_pred HHhhhcc---CcEEEEEec-----CCCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS---SDIVLMVLD-----ASKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~-----~~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+.. .+++.+... ........+.+.++|+.+++ . .++++.+|||||+||++|| +++|
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111111 111111110 11122334567888999998 2 3889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+++.+ .. ..++|++|||.+...++ ..++++++..+
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~----------d~i~~l~~G~i 223 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG----------ERIIYLKDGEV 223 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS----------SEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC----------CEEEEEECCEE
Confidence 999999999866655544 33 34999999997544433 44667766544
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=4.5e-29 Score=230.41 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=123.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+++..|+++||+||||||||||+++|+|+..| ++|.|.++|.++...+...+ ...+..+++++|
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~-~~~r~~Ig~v~Q 112 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESEL-TKARRQIGMIFQ 112 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHH-HHHHTTEEEECS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH-HHHhCcEEEEeC
Confidence 478899999999999999999999999999999988 89999999987632110000 001122333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+|+ ..++++.+||||||||++|| |++||||+
T Consensus 113 ~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs 192 (366)
T 3tui_C 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192 (366)
T ss_dssp SCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred CCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2222211 122222111 11223345678899999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+++.+ .. .+ |+|++|||... .++|| .++|+++.-++.
T Consensus 193 ~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD----------rv~vl~~G~iv~ 244 (366)
T 3tui_C 193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD----------CVAVISNGELIE 244 (366)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS----------EEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEEE
Confidence 99999866655544 32 24 99999999654 34444 467777665543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=2.9e-28 Score=226.39 Aligned_cols=174 Identities=21% Similarity=0.250 Sum_probs=126.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|+..| ++|.|.++|.++.. .+ .....+++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~--~~----~~~r~ig~VfQ 82 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMND--TP----PAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--CC----GGGSCEEEECT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCC--CC----HHHCCEEEEec
Confidence 478899999999999999999999999999999988 89999999987631 11 11233455555
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 4433332 2333332221 1223345678899999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+||+.....+++.+ .. .+ ++|++|||.+ +..++ ..++|+++.-+...
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~a----------Dri~vl~~G~i~~~ 215 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA----------DKIVVLDAGRVAQV 215 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHC----------SEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC----------CEEEEEECCEEEEE
Confidence 99998765554444 32 24 9999999954 44444 45778887766543
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=7.3e-29 Score=216.03 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+............++.+|
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 89 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHHHhCcEEEEec
Confidence 478899999999999999999999999999999988 899999999765211000000000001111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++|+.+++ ..++++.+|||||+||+++| +++||||+
T Consensus 90 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 169 (224)
T 2pcj_A 90 FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169 (224)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111110 0111111111 11112234567889999999 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
+||+.....+++.+ ...+ ++|++|||....+
T Consensus 170 ~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 204 (224)
T 2pcj_A 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAE 204 (224)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 99999866555444 3334 9999999955433
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.94 E-value=3.7e-28 Score=216.19 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++. .+..... ......++++|
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~~~~~-~~~~~i~~v~Q 107 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKDTNLN-KVREEVGMVFQ 107 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STTCCHH-HHHHHEEEECS
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-CccccHH-HHhCcEEEEeC
Confidence 578899999999999999999999999999999988 8999999997653 1110000 00001111111
Q ss_pred HHhhhc---cCcEEEEEe-c--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVL-D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~-~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.. . ........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 108 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPt 187 (263)
T 2olj_A 108 RFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187 (263)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 111111 111111110 1 11112234567889999999 67889999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++.+ ...+ ++|++|||.+. .+++ ..++++++.-+.
T Consensus 188 s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~----------d~v~~l~~G~i~ 238 (263)
T 2olj_A 188 SALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG----------DRVLFMDGGYII 238 (263)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999866555544 3334 89999999543 3344 346666665443
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=3.7e-28 Score=215.90 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 89 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEP---AELYHYGIVRTFQ 89 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHHHHHTEEECCC
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCH---HHHHhCCEEEEcc
Confidence 467788889999999999999999999999999988 89999999976521100 0000011122222
Q ss_pred HHhhh---ccCcEEEEEecC---------------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----
Q 021103 133 VIAVS---KSSDIVLMVLDA---------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~---------------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---- 188 (317)
....+ ...+++.+.... .......+.+.++|+.+++ ..++++.+|||||+||++||
T Consensus 90 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM 169 (257)
T ss_dssp CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred CCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH
Confidence 11111 112222221111 1112234567889999999 67889999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+ ...+ ++|++|||.. +..++|
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999866655544 3334 9999999955 344443
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=1.3e-27 Score=220.56 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=123.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 94 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVT--DLP----PQKRNVGLVFQ 94 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TCC----GGGSSEEEECG
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECC--cCC----hhhCcEEEEec
Confidence 478999999999999999999999999999999988 8999999998752 111 12233444455
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4433332 23332222111 122234578889999999 67899999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 225 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA----------DRVLVLHEGNVE 225 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 339999999954 33444 346677766544
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=3e-27 Score=211.60 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=119.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. .. ...+...++++|
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~~-~~-~~~~~~ig~v~Q 91 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSRK-GI-MKLRESIGIVFQ 91 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSHH-HH-HHHHHSEEEECS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCcccc-cH-HHHhCcEEEEEc
Confidence 578899999999999999999999999999999988 89999999987621000 00 000111222222
Q ss_pred HHh--h--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--V--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... . ....+.+.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt 171 (275)
T 3gfo_A 92 DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171 (275)
T ss_dssp SGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred CcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 110 0 011111111111 11222335578889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhc-ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILH---EYK-IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~-~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++ .+. ..+ ++|++|||... .++| ..++++++.-+.
T Consensus 172 s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~----------drv~~l~~G~i~ 223 (275)
T 3gfo_A 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYC----------DNVFVMKEGRVI 223 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGC----------SEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhC----------CEEEEEECCEEE
Confidence 9999988655544 443 324 99999999554 3444 446677766544
No 11
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=1.1e-27 Score=210.60 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.. +++||+||||||||||+++|+|...| .+|.|.++|.++.. .+. .....++.+|
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~--~~~----~~~~i~~v~q 77 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITP--LPP----ERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SCT----TTSCCBCCCS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCc--Cch----hhCcEEEEcC
Confidence 578899999 99999999999999999999999988 89999999986521 111 1112222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+...........+.+.++|+.+++ ..++++.+|||||+||+++| +++||||++|
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 2111111 12221111111111224567889999999 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+++.+ .. ..++|++|||.. +..++| .++++++.-+.
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d----------~i~~l~~G~i~ 206 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD----------EVAVMLNGRIV 206 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS----------EEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999866555544 32 349999999954 344443 46666665444
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=1e-27 Score=221.67 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=122.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 82 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVN--DIP----PKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGTTEEEECS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECC--CCC----hhhCcEEEEec
Confidence 478899999999999999999999999999999988 8999999998752 111 11223344444
Q ss_pred HHhhhcc---CcEEEEEecCCCc--hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+....... ....+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 3322222 2233222221111 1223568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+. ..++ ..++++++.-+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a----------dri~vl~~G~i~ 213 (359)
T 2yyz_A 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA----------SRIAVFNQGKLV 213 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 2399999999543 3444 346777776554
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=2.1e-27 Score=220.60 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=120.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 90 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVT--YLP----PKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGGTEEEEEC
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECC--CCC----hhhCcEEEEec
Confidence 478899999999999999999999999999999988 8999999998752 111 11223444445
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 4433332 22232222111 122234568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||... ..++ ..++++++.-+.
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 221 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG----------DRIAVMNRGQLL 221 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 2499999999543 3444 346677766554
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=1.6e-27 Score=221.63 Aligned_cols=174 Identities=19% Similarity=0.203 Sum_probs=123.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec----CCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD----LPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d----~~g~~~~~~~~~~ 128 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++.... .+. .....+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~----~~r~ig 84 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPEKGIFVPP----KDRDIA 84 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGGGTEECCG----GGSSEE
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECccccccccCCH----hHCCEE
Confidence 478899999999999999999999999999999988 8999999999875310 111 122344
Q ss_pred hHHHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 129 RGRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+++|....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++|
T Consensus 85 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 164 (372)
T 1g29_1 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164 (372)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 44443322222 22222222111 122234568889999999 67899999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+. . ..++|++|||.+. ..++ ..++++++.-+.
T Consensus 165 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 219 (372)
T 1g29_1 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG----------DRIAVMNRGVLQ 219 (372)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC----------CEEEEEeCCEEE
Confidence 9999999998666555443 2 2399999999543 3444 346777766554
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.94 E-value=7e-28 Score=222.78 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=124.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~~ 129 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++...+ .+. .....++
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~~~----~~r~ig~ 86 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIVPP----EDRKIGM 86 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESSCG----GGSCEEE
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccCCh----hhCCEEE
Confidence 378899999999999999999999999999999988 8999999998875311 111 1233444
Q ss_pred HHHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 130 GRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
++|....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||
T Consensus 87 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE 166 (353)
T 1oxx_K 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE 166 (353)
T ss_dssp EETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4444333322 23333322211 122234578899999999 67899999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+.+.+ .. ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 167 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a----------dri~vl~~G~i~ 220 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA----------DRVGVLVKGKLV 220 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 99999998765555444 32 239999999954 33444 346677766544
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=6.4e-28 Score=214.82 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--------cCCCc-cccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--------DLPGI-IEGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--------d~~g~-~~~~ 123 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++... +.+.. ....
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccccccChhhHHHH
Confidence 478899999999999999999999999999999988 899999999875310 00000 0000
Q ss_pred cCCchhHHHHHhhhc---cCcEEEEEe-cC--CCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE------
Q 021103 124 SEGKGRGRQVIAVSK---SSDIVLMVL-DA--SKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~d~i~~v~-~~--~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia------ 188 (317)
....++++|....+. ..+++.+.. .. .......+.+.++|+.+++ . .++++.+|||||+||++||
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 001111111111111 111111110 11 1112234567889999999 5 7899999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ ...+ ++|++|||... ..++| .++++++.-+.
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d----------~v~~l~~G~i~ 232 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS----------HVIFLHQGKIE 232 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS----------EEEEEETTEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999999999866555444 3334 99999999543 33443 46667665444
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.7e-27 Score=220.51 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| ++|.|.++|.++. +.+ ......++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 82 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVT--ELP----PKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGTTEEEECT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECC--cCC----HhHCcEEEEec
Confidence 578899999999999999999999999999999988 8999999998752 111 11223344444
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 3322222 2223222211 1122234568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 213 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA----------DRIAVIREGEIL 213 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 339999999954 33444 346677766554
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.7e-27 Score=209.53 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=109.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 88 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPA---HVINRMGIALVPE 88 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHHHHTTEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCH---HHHHhCCEEEEec
Confidence 467899999999999999999999999999999988 89999999976521100 0000011122222
Q ss_pred HHhhhc---cCcEEEEEe-cCCCchhhHHHHHHHHHHcc-c--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL-DASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~-~~~~~~~~~~~~~~~L~~~~-l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. .........+.+.++++.++ + ..++++.+|||||+||++|| +++||||+
T Consensus 89 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 168 (240)
T 1ji0_A 89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred CCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 111111 111111111 00112223456778888884 7 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+++.+ ...+ ++|++|||.. +.+++|
T Consensus 169 ~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 99999866555544 3334 9999999963 445443
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.93 E-value=8.1e-28 Score=221.66 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=119.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|...| ++|.|.++|.++. +.+ ......++++|
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~--~~~----~~~r~ig~v~Q 79 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVT--DLS----PEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----HHHHTCEEECT
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECC--CCc----hhhCcEEEEec
Confidence 578899999999999999999999999999999988 8999999998652 111 11122333333
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+.......... +++.++|+.+++ ..++++.+|||||+||++|| +++||||++|
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 3222221 1222221111000112 568889999999 67899999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+.+.+. . .+ ++|++|||.. +..++| .++++++.-+.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad----------ri~vl~~G~i~ 207 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD----------RIAVVMDGKLI 207 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS----------EEEEESSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9998665555443 2 24 9999999954 344443 46677766544
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=6.3e-28 Score=215.21 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=116.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. .......++.+|
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~----~~~~~~i~~v~q 92 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQP----KALARTRAVMRQ 92 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCH----HHHHHHEEEECS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCH----HHHhheEEEEec
Confidence 578899999999999999999999999999999988 89999999986421100 000000011111
Q ss_pred HHhh---hccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------------eeec
Q 021103 133 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FNST 192 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------------lilD 192 (317)
.... +...+++.+...........+.+.++++.+++ ..++++.+|||||+||++|| +++|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD 172 (266)
T 4g1u_C 93 YSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD 172 (266)
T ss_dssp CCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred CCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 0000 00011111111111222345678889999999 67889999999999999887 5899
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. .+ ++|++|||.+. ..+| ..++++++..+.
T Consensus 173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~----------d~v~vl~~G~i~ 227 (266)
T 4g1u_C 173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA----------DRIMLLAQGKLV 227 (266)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999866555544 33 34 89999999554 3344 446777766544
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=3.1e-27 Score=209.48 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.. . ........++.+|
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~--~---~~~~~~~i~~v~q 95 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE--E---PHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT--C---HHHHHTTEEEECT
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc--c---HHHHhhcEEEEcC
Confidence 578899999999999999999999999999999988 89999999976410 0 0000111111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. .........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 111111 011111111 011112223567888999999 57889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH---hcccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHE---YKIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+++. +...+ ++|++|||.+. ..+| ..++++++.-+.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~----------d~v~~l~~G~i~ 225 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC----------DRIALIHNGTIV 225 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTC----------SEEEEEETTEEE
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHC----------CEEEEEECCEEE
Confidence 9999986555444 43334 89999999543 3333 346666665443
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=5e-27 Score=210.73 Aligned_cols=158 Identities=14% Similarity=0.062 Sum_probs=110.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++. ..+. .......++.
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~----~~~~~~i~~v 102 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSA----ETVRQHIGFV 102 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCH----HHHHTTEEEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCH----HHHcCcEEEE
Confidence 578899999999999999999999999999999988 8999999997653 1110 0011223333
Q ss_pred HHHHhh-h----ccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAV-S----KSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~-~----~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
+|.... + ...+++.+... ........+.+.++|+.+++ ..++++.+|||||+||++||
T Consensus 103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 182 (279)
T 2ihy_A 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV 182 (279)
T ss_dssp CHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred EcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 333221 1 11222211100 00112234567889999999 67889999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cc-cCcE--EEecCCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KI-HNAE--VLFREDATV 225 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~-~~~~--i~~shd~~~ 225 (317)
+++||||++||+.....+++.+ .. ..++ |++|||...
T Consensus 183 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 9999999999999866655544 33 3489 999999543
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=1e-26 Score=207.60 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|.++... ......++++|
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~-------~~~~~i~~v~q 85 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGY-------EIRRNIGIAFQ 85 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHH-------HHGGGEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchH-------HhhhhEEEEec
Confidence 468899999999999999999999999999999988 899999999764210 00011111111
Q ss_pred HH-hhh---ccCcEEEEEecC-CCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VI-AVS---KSSDIVLMVLDA-SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~-~~~---~~~d~i~~v~~~-~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.. ..+ ...+++.+.... .......+++.++++.+++. .++++.+|||||+||++|| +++|||
T Consensus 86 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 165 (266)
T 2yz2_A 86 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165 (266)
T ss_dssp SGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 10 000 011111111100 11112245678889999885 6788999999999999998 899999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ...+ ++|++|||... ..++ ..++++++..+.
T Consensus 166 ts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~----------d~v~~l~~G~i~ 217 (266)
T 2yz2_A 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV----------DRVVVLEKGKKV 217 (266)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGC----------SEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 9999999866555544 3334 99999999654 3334 345666665544
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=1.5e-27 Score=205.91 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++. + + ....++.+|
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~--~---~----~~~i~~v~q 85 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPIT--K---V----KGKIFFLPE 85 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGG--G---G----GGGEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhh--h---h----cCcEEEEeC
Confidence 467889999999999999999999999999999988 8999999997641 0 0 000111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+...........+.+.++++.+++ . ++++.+|||||+||+++| +++||||++|
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~L 164 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 10000 0011111100000001114567888999998 5 888999999999999998 9999999999
Q ss_pred CHHHHHHHHHH---hcc-cCcEEEecCCCC-hhhHHHH
Q 021103 199 DEKLCYQILHE---YKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~---l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
|+.....+++. +.. ..++|++|||.. +..++++
T Consensus 165 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 202 (214)
T 1sgw_A 165 DEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNEN 202 (214)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 99875555444 432 348999999954 3444443
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.92 E-value=9.6e-27 Score=205.53 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| . |.|.++|.++...+.. ......++.+|
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~----~~~~~i~~v~q 80 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSAT----KLALHRAYLSQ 80 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHH----HHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHH----HHhceEEEECC
Confidence 478899999999999999999999999999999988 8 9999999764210000 00000111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------eee
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNS 191 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------lil 191 (317)
....+ ...+++.+... ... ..+.+.++++.+++ ..++++.+|||||+||++|| +++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 81 QQTPPFATPVWHYLTLHQH-DKT--RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp CCCCCTTCBHHHHHHTTCS-STT--CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred CCccCCCCcHHHHHHHhhc-cCC--cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 10000 00111111000 000 14567889999999 67889999999999999987 789
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~ 225 (317)
||||++||+.....+++.+ ...+ ++|++|||...
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 195 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH 195 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999866555544 3334 99999999554
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.92 E-value=4.5e-26 Score=201.18 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=108.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. ...+...++++|
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q 90 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADP----NWLRRQVGVVLQ 90 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCH----HHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCH----HHHHhcEEEEeC
Confidence 578899999999999999999999999999999988 89999999976421000 000001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+.. .....+.+.+.++.+++ . .++++.+|||||+||++||
T Consensus 91 ~~~l~~~tv~enl~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 91 DNVLLNRSIIDNISLAN----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp SCCCTTSBHHHHHTTTC----TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred CCccccccHHHHHhccC----CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 0011111110 01112345556666665 2 2345689999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+. ...++|++|||......+ ..++++++.-+.
T Consensus 167 llLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~----------d~v~~l~~G~i~ 222 (247)
T 2ff7_A 167 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----------DRIIVMEKGKIV 222 (247)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS----------SEEEEEETTEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 89999999999998665554443 334999999996644323 346677665443
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=5.7e-26 Score=201.18 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.+. ..+.++.. +.+... . .+.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~-~~i~~v~q~~~~~~~----~-tv~ 84 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVY-QSIGFVPQFFSSPFA----Y-SVL 84 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEEC-SCEEEECSCCCCSSC----C-BHH
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEe-ccEEEEcCCCccCCC----C-CHH
Confidence 578899999999999999999999999999999988 88999853 23444321 221110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+......... ............+.+.++++.+++ ..++++.+|||||+||++|| +++||||++||+
T Consensus 85 enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 85 DIVLMGRSTH---INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp HHHHGGGGGG---SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred HHHHHhhhhh---cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 2111110000 000000122234567889999999 57889999999999999998 999999999999
Q ss_pred HHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEY---KIH-N-AEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~ 230 (317)
.....+++.+ ... + ++|++|||... .+++|
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN 197 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9866555444 333 4 89999999553 34443
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=2.3e-26 Score=202.72 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=112.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++...+... .+...++.+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~q 83 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLEN----WRSQIGFVSQ 83 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCSC----CTTTCCEECC
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HHhhEEEEcC
Confidence 578899999999999999999999999999999988 8999999997652211111 1112222222
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cc-----------cccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-----------~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+... .....+.+.+.++.+++ .. ++++.+|||||+||++||
T Consensus 84 ~~~l~~~tv~enl~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 84 DSAIMAGTIRENLTYGLE---GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp SSCCCCEEHHHHTTSCTT---SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccccccHHHHHhhhcc---CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 211111 1111111101 11123346667777776 22 345679999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.. +.+++..+....++|++|||...... ...++++++.-+.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~----------~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD----------ADKIYFIEKGQIT 216 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH----------CSEEEEEETTEEC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh----------CCEEEEEECCEEE
Confidence 89999999999886 45555555533499999999654332 2346777765544
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=1e-25 Score=199.26 Aligned_cols=160 Identities=18% Similarity=0.082 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT--HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~--~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++..|++++|+||||||||||+++|+|. ..| .+|.|.++|.++...+. ........++.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~~~~~~~---~~~~~~~i~~v 85 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----------ERGEILLDGENILELSP---DERARKGLFLA 85 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEECTTSCH---HHHHHTTBCCC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEECCCCCH---HHHHhCcEEEe
Confidence 468899999999999999999999999999998 555 89999999976521100 00000001111
Q ss_pred HHHHhhhcc---CcEEEEEe---cC--CCchhhHHHHHHHHHHccc---cccccCCc-ccccceeeeeeE---------e
Q 021103 131 RQVIAVSKS---SDIVLMVL---DA--SKSEGHRQILTKELEAVGL---RLNKRPPQ-IYFKKKKTGGIS---------F 189 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~---~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~-LS~g~~qr~~ia---------l 189 (317)
+|....+.. .+++.+.. .. .......+.+.++|+.+++ ..++++.+ |||||+||++|| +
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp CCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEE
T ss_pred ccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 111100000 01111100 00 0111223467788999998 35778888 999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChh
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVD 226 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~ 226 (317)
++||||++||+.....+++.+ ...+ ++|++|||....
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999999866555544 3334 899999996543
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.91 E-value=8.3e-26 Score=201.03 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~ 131 (317)
.++++.+. |++++|+||||||||||+++|+|.. | .+|.|.++|.++.. . .. ....+ +.+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~--~----~~-~~~i~~~v~ 81 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRK--I----RN-YIRYSTNLP 81 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGG--C----SC-CTTEEECCG
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcc--h----HH-hhheEEEeC
Confidence 46789999 9999999999999999999999999 8 89999999976421 0 00 11222 222
Q ss_pred HHHhh-hccCcEEEEEecCCCchhhHHHHHHHHHHcccc---ccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAV-SKSSDIVLMVLDASKSEGHRQILTKELEAVGLR---LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~-~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~---~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
|.... +...+++.+..... ....+.+.++++.+++. .++++.+|||||+||+++| +++||||++|
T Consensus 82 Q~~~l~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 82 EAYEIGVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp GGSCTTSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred CCCccCCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 22111 01111111111101 11234678889999884 6888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhccc-CcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEYKIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~~~-~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+++.+... .++|++|||... ..++|
T Consensus 160 D~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp CHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred CHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 999877776666532 299999999543 44444
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=2.9e-26 Score=205.03 Aligned_cols=174 Identities=12% Similarity=0.084 Sum_probs=110.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+.. .....+++++|
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~----~~~~~i~~v~Q 100 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPLVQYDHH----YLHTQVAAVGQ 100 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHH----HHHHHEEEECS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEcccCCHH----HHhccEEEEec
Confidence 478899999999999999999999999999999988 899999999765211100 00000111111
Q ss_pred HHhhh--ccCcEEEEEecCCCc-hh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVS--KSSDIVLMVLDASKS-EG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~-~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+ ...+++.+....... .. ....+.++++.+ ++ ..++++.+|||||+||++|| +++
T Consensus 101 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 180 (271)
T 2ixe_A 101 EPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180 (271)
T ss_dssp SCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11000 001111111111111 11 111234566666 55 56788999999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+++.+. . ..++|++|||...... ...++++++.-+.
T Consensus 181 DEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~----------~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 181 DNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER----------AHHILFLKEGSVC 235 (271)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT----------CSEEEEEETTEEE
T ss_pred ECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEEE
Confidence 99999999998666655543 2 2389999999654332 2346677665443
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.91 E-value=1e-25 Score=201.09 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+||||||||||+++|+|.. .| .+|.|.++|.++...+.... .....++.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~i~~~~~~~~---~~~~i~~v 102 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLALSPEDR---AGEGIFMA 102 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEEGGGSCHHHH---HHHTEEEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CCeEEEECCEECCcCCHHHH---hhCCEEEE
Confidence 5788999999999999999999999999999984 34 89999999976421100000 00000011
Q ss_pred HHHHhhhcc---CcEEEEEe-------c--CCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVL-------D--ASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~-------~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
+|....+.. .+++.+.. . ........+.+.++|+.+++ ..++++. +|||||+||++||
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 110000000 00000000 0 00111223567888999998 2466676 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
+++||||++||+.....+++.+. ..+ ++|++|||....
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 227 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 227 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH
Confidence 99999999999998766665553 333 899999996543
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.91 E-value=6.3e-26 Score=205.64 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++..++.. ..+..+++++|
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~~~~~~----~~r~~i~~v~Q 135 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDISQVTQA----SLRSHIGVVPQ 135 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETTSBCHH----HHHHTEEEECS
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcccCCHH----HHhcceEEEec
Confidence 478899999999999999999999999999999988 899999999875322110 00111222222
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .......+.+.++.+++ .+..+..+|||||+||++||
T Consensus 136 ~~~lf~~Tv~eNi~~~~----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 136 DTVLFNDTIADNIRYGR----VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp SCCCCSEEHHHHHHTTS----TTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCcccHHHHHHhhc----ccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 111110 011111111 01112233344444433 34556689999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+.....+++.+. ...|+|++||+...... ...|+|+++.-++..+
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~----------aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN----------ADQILVIKDGCIVERG 270 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT----------CSEEEEEETTEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc----------CCEEEEEECCEEEEEC
Confidence 99999999999998666655543 44599999999654332 3567888877665433
No 34
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.90 E-value=6.9e-24 Score=199.28 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------CC---eeEEEecCCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------ND---TKIQLLDLPGI 119 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~g---~~i~~~d~~g~ 119 (317)
+++|+|.||+|||||+|+|+|....+++|||||+++..|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999998866899999999999997643 33 57899999998
Q ss_pred cccccCCchhHHHHHhhhccCcEEEEEecCCCc-------------hhhHHHHHHHHHHccc-cccccCCcccccceeee
Q 021103 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS-------------EGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTG 185 (317)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~-------------~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~ 185 (317)
.+....+.+...+++..++.+|.+++++|+... ..+.+.+...|....+ .+++++..+... ..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~-~~~~ 160 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKR-IKLQ 160 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHST-TTSS
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-Hhhc
Confidence 764433334445555677889999999998642 2344455555554422 122222222100 0000
Q ss_pred eeEe--eecCCC--CCCCHHHHHHHHHHhcccCcEEEecCCCChhh---HHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 186 GISF--NSTLPL--THVDEKLCYQILHEYKIHNAEVLFREDATVDD---LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 186 ~ial--ilDEPt--~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~---~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
...+ -+.+-+ -+.+.+.+..+++.+..... ..+++.++ +.+... ...+|+++|+||+|+...++++.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~--~~~kP~i~v~NK~D~~~~~~l~~ 234 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIR--RVNKPMVIAANKADAASDEQIKR 234 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHH--HHHSCEEEEEECGGGSCHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhh--ccCCCEEEEEeCccccchHHHHH
Confidence 0000 000000 13556677788887765443 11333322 222222 12489999999999986555554
Q ss_pred Hhc-----CCCeEEEeccccccHHHH------------------------------------------------H-HHHH
Q 021103 259 LAR-----QPNSVVISCNLKLNLDRL------------------------------------------------L-ARMW 284 (317)
Q Consensus 259 l~~-----~~~~v~iSa~~~~~i~~l------------------------------------------------~-~~i~ 284 (317)
+.+ ...++++||..+.++++| . +.++
T Consensus 235 l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~ 314 (397)
T 1wxq_A 235 LVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVF 314 (397)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSSSCSHHHHHHHHHH
T ss_pred HHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 432 235899999998887542 1 3568
Q ss_pred HHhCeeEEEec--------CCCCCCCCCCCEEEeccceee
Q 021103 285 EEMGLVRVYTK--------PQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 285 ~~l~~~~~~~~--------~~~~~~~~~~p~~~~~~~~v~ 316 (317)
+.|+.+++||- ++|. ...+|+++++|+||.
T Consensus 315 ~~L~li~vft~~~~~~~~~~~g~--~~~~~~~l~~G~t~~ 352 (397)
T 1wxq_A 315 DLLKLIPVYPVHDENKLTDQFGN--VLPHVFLMKKGSTPR 352 (397)
T ss_dssp TTSCEEEEEEESCC-----CCSC--SSCCCEEEETTCCHH
T ss_pred HHhCCeEEEeecccccccCCcCc--ccceeEEeCCCCCHH
Confidence 89999999993 3332 355799999999973
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.8e-25 Score=208.88 Aligned_cols=174 Identities=19% Similarity=0.147 Sum_probs=119.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|||||||||||++|+|+.. .+|.|.++|.++...+. ...+...++++|
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------------~~G~I~i~G~~i~~~~~----~~~rr~ig~v~Q 101 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGEIQIDGVSWDSITL----EQWRKAFGVIPQ 101 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------------EEEEEEESSCBTTSSCH----HHHHHTEEEESC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------------CCeEEEECCEECCcCCh----HHHhCCEEEEcC
Confidence 57889999999999999999999999999999863 57999999976521110 000112222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc-----------ccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~-----------LS~g~~qr~~ia--------- 188 (317)
....+.. .+++. .. .....+.+.+.++.+++ ..++++.. |||||+||++||
T Consensus 102 ~~~lf~~tv~enl~----~~-~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 102 KVFIFSGTFRKNLD----PN-AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp CCCCCSEEHHHHHC----TT-CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CcccCccCHHHHhh----hc-cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 2211110 01110 01 11223567788999998 67778877 999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+.. ..++|++|||.+.... ...++|+++.-+...+..+
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~----------aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE----------CDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT----------CSEEEEEETTEEEEESSHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh----------CCEEEEEECCEEEEECCHH
Confidence 899999999999987777666653 3499999999654332 3568888887766443333
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=8.5e-25 Score=194.43 Aligned_cols=169 Identities=13% Similarity=0.094 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...+ +|.|.++|.++...+. ...+...++.+|
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------------~G~I~i~g~~i~~~~~----~~~~~~i~~v~Q 100 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA------------EGDIKIGGKNVNKYNR----NSIRSIIGIVPQ 100 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC------------EEEEEETTEEGGGBCH----HHHHTTEEEECS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------------CeEEEECCEEhhhcCH----HHHhccEEEEcC
Confidence 478899999999999999999999999999999754 6999999976521110 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .. ...+.+.+.++.+++ . .++++.+|||||+||++||
T Consensus 101 ~~~l~~~tv~enl~~~~--~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 176 (260)
T 2ghi_A 101 DTILFNETIKYNILYGK--LD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176 (260)
T ss_dssp SCCCCSEEHHHHHHTTC--TT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCcccccCHHHHHhccC--CC--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE
Confidence 111110 011111100 00 112344556666654 1 2456789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ ....++|++|||...... ...++++++.-+.
T Consensus 177 llLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~----------~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 177 VIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS----------AESIILLNKGKIV 232 (260)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT----------CSEEEEEETTEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh----------CCEEEEEECCEEE
Confidence 9999999999999866554444 333499999999654332 3346667665443
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=183.95 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=100.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|. +.++....... . .-+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i~~v~Q~~~~~----~-~tv~e 84 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-VAYVPQQAWIQ----N-DSLRE 84 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-EEEECSSCCCC----S-EEHHH
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-EEEEcCCCcCC----C-cCHHH
Confidence 578899999999999999999999999999999987 8999999883 44432111100 0 00112
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHH---HHHccc-------cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKE---LEAVGL-------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~---L~~~~l-------~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.+.... ... . .....+.+. ++.++. .+++++.+|||||+||+++| +++||
T Consensus 85 nl~~~~---------~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 85 NILFGC---------QLE-E-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp HHHTTS---------CCC-T-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HhhCcc---------ccC-H-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111110 001 1 111112111 222222 24678899999999999998 89999
Q ss_pred CCCCCCHHHHHHHHHHhc------ccCcEEEecCCCChhhHH
Q 021103 194 PLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLI 229 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~------~~~~~i~~shd~~~~~~~ 229 (317)
||++||+.....+++.+. ...++|++|||......+
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~ 195 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGS
T ss_pred cccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhC
Confidence 999999999888887772 223899999997654433
No 38
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.89 E-value=6.9e-24 Score=198.13 Aligned_cols=230 Identities=15% Similarity=0.183 Sum_probs=152.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEG 122 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~ 122 (317)
.|.+++|+|+||||||||||+|+|... .+++|||||++|+.|.+.+.| ..+.++|+||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 478999999999999999999999887 799999999999999999987 46789999999876
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
...+.+...++...++.+|.++++++..... ....++++... +.=..++|||+..+|++.
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~-------------------~i~~v~~~~dP-~~di~ildeel~~~D~~~ 158 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFDDA-------------------EIIHVEGDVDP-IRDLSIIVDELLIKDAEF 158 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCCTT-------------------CSSCCSSSSCH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------eeeeeccccCc-chhhhhchhhhHHHHHHH
Confidence 6555555556777788999999999875310 01111111100 000023455555555554
Q ss_pred HHHHHHH---h-cccCcEEEecCC-CChhhHHHHH------------------------h--cccceeeeeEEEecccCC
Q 021103 203 CYQILHE---Y-KIHNAEVLFRED-ATVDDLIDVI------------------------E--GNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 203 ~~~~l~~---l-~~~~~~i~~shd-~~~~~~~~~~------------------------~--~~~~~~p~i~v~NK~D~~ 251 (317)
+...+.. + ...+..+ ++|+ ....++|+.+ . .....+|+++++|+.|..
T Consensus 159 ~~k~~~~l~~~~~~~g~ti-~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~ 237 (392)
T 1ni3_A 159 VEKHLEGLRKITSRGANTL-EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERD 237 (392)
T ss_dssp HHHHHHHHHHTTCCSSCSS-SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchh
Confidence 3332222 2 1111111 1333 1122222221 1 124468999999999732
Q ss_pred ---C-hhhHHHHhc----C---CCeEEEeccc---------------------cccHHHHHHHHHHHhCeeEEEecCCCC
Q 021103 252 ---G-IDDVDKLAR----Q---PNSVVISCNL---------------------KLNLDRLLARMWEEMGLVRVYTKPQGQ 299 (317)
Q Consensus 252 ---~-~~~~~~l~~----~---~~~v~iSa~~---------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~ 299 (317)
. +++++.+.+ . ..++++||.. +.|++++.+..++.|+.+++||..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~- 316 (392)
T 1ni3_A 238 FLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED- 316 (392)
T ss_dssp HTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS-
T ss_pred hcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC-
Confidence 1 333443322 2 3589999987 68999999999999999999996654
Q ss_pred CCCCCCCEEEecccee
Q 021103 300 QPDFTEPVVLSVVCYI 315 (317)
Q Consensus 300 ~~~~~~p~~~~~~~~v 315 (317)
.-++.++++|+|+
T Consensus 317 ---e~rawti~~G~~a 329 (392)
T 1ni3_A 317 ---EVRSWTIRKGTKA 329 (392)
T ss_dssp ---EEEEEEEETTCBH
T ss_pred ---cceeEEeCCCCcH
Confidence 3479999999985
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=2.3e-24 Score=188.24 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. +.++. .+.+... -+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~-i~~v~q~~~~~~~------tv~ 86 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-ISFCSQFSWIMPG------TIK 86 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC-EEEECSSCCCCSB------CHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE-EEEEecCCcccCC------CHH
Confidence 578899999999999999999999999999999988 8999999883 44332 2222110 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+..... .. . .. ....+.++.+++ ...+++.+|||||+||+++| +
T Consensus 87 enl~~~---------~~-~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 87 ENIIFG---------VS-Y-DE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp HHHHTT---------SC-C-CH---HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHhhcc---------CC-c-Ch---HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 211110 00 0 00 112222333332 12335689999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||||++||+.....+++.+ . ...++|++|||......+ ..++++++..+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~----------d~v~~l~~G~i~ 208 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA----------DKILILHEGSSY 208 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC----------SEEEEEETTEEE
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC----------CEEEEEECCEEE
Confidence 999999999999988888763 3 223899999996543322 346666655443
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.88 E-value=5.8e-24 Score=209.58 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=115.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~Q 424 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLTN----LRRHFALVSQ 424 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHHH----HhcCeEEEcC
Confidence 478899999999999999999999999999999988 8999999998764322111 1112222333
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+... +....+.+.+.++.+++ . ...+..+|||||+||+++|
T Consensus 425 ~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAE---GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred CCccccccHHHHHhccCC---CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 222111 1222222110 11123456667777665 2 2334579999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+.....+.+.+. ...++|++||+....+. ...++++++.-+..
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ----------ADEILVVDEGEIIE 558 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEEE
Confidence 89999999999998666555543 33499999999654333 34577777665543
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.88 E-value=1.1e-23 Score=189.84 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. +.++.. +.++. . -+.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i~~v~Q~~~l~~----~--tv~ 116 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-ISFCSQNSWIMP----G--TIK 116 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-EEEECSSCCCCS----S--BHH
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-EEEEeCCCccCc----c--cHH
Confidence 578899999999999999999999999999999988 8999999883 444321 21111 0 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+... .. .... ....+.++.+++ .+..++.+|||||+||++|| +
T Consensus 117 enl~---~~---------~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 117 ENII---GV---------SYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp HHHH---TT---------CCCH---HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHhh---Cc---------ccch---HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 2111 00 0000 112223333333 12334579999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
++||||++||+.....+++.+ . ...++|++|||......+ ..++++++..+
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~----------d~i~~l~~G~i 236 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA----------DKILILHEGSS 236 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS----------SEEEEEETTEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC----------CEEEEEECCeE
Confidence 999999999999988888753 2 223999999996543323 34566665544
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=5.9e-24 Score=209.53 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++.-.+.. ..+...+++.|
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~v~Q 424 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLA----SLRNQVALVSQ 424 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHH----HHHHTEEEECS
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHH----HHHhhCeEEcc
Confidence 467899999999999999999999999999999988 899999999765211100 00011111112
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+. ..+....+.+.+.++.+++ ....+..+|||||+||+++|
T Consensus 425 ~~~l~~~tv~eni~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i 501 (582)
T 3b60_A 425 NVHLFNDTVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_dssp SCCCCSSBHHHHHHTT---TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCcCCCCCHHHHHhcc---CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 111111 01111111 0011123446666666655 23345689999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+.+.+. ...++|++||+....+. ...++++++.-+.
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~ 557 (582)
T 3b60_A 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ----------ADEIVVVEDGIIV 557 (582)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT----------CSEEEEEETTEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh----------CCEEEEEECCEEE
Confidence 99999999999998666555443 34499999999654332 3457778766554
No 43
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.87 E-value=2.1e-22 Score=185.97 Aligned_cols=235 Identities=20% Similarity=0.272 Sum_probs=143.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
+.+++|+|.||||||||+|+|++....+++|||||++|..|.+.+.+ ..+.++||||+.+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 45899999999999999999999887789999999999999999876 4689999999976544
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCccc----ccceeeeee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIY----FKKKKTGGI 187 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS----~g~~qr~~i 187 (317)
.+.+...+++..++.+|.+++++|... +..+.+.+...|....+ .+.++...+. +|.+....
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~- 160 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF- 160 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH-
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH-
Confidence 333444566667889999999998764 22233344444433322 1111111111 11100000
Q ss_pred EeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccCC--ChhhHHHHhc--
Q 021103 188 SFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDVI--GIDDVDKLAR-- 261 (317)
Q Consensus 188 alilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~~--~~~~~~~l~~-- 261 (317)
-.+....+.+.+.....+ -+-+++-++ ...+.. ....+|+++|.|+.|.. .+...+.+..
T Consensus 161 -----------~~~~l~~~~~~L~~~~~~--~~~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~ 226 (363)
T 1jal_A 161 -----------ELSVMEKILPVLENAGMI--RSVGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIA 226 (363)
T ss_dssp -----------HHHHHHHHHHHHHTTCCG--GGSCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCCCc--cccCCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHH
Confidence 001122222222221110 001222222 122222 23469999999999864 2333333322
Q ss_pred ---CCCeEEEeccc----------------------cccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 262 ---QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 262 ---~~~~v~iSa~~----------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...++++||.. +.|+++|.+.+++.|+.+++||..| +..+|.++++|+|+
T Consensus 227 ~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~----~e~raw~i~~G~ta 301 (363)
T 1jal_A 227 AKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGV----KEVRAWTVSVGATA 301 (363)
T ss_dssp HHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECS----SEEEEEEEETTCBH
T ss_pred HHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCC----CCcceeEecCCCcH
Confidence 23578888654 4799999999999999999999554 35689999999996
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.87 E-value=1.2e-23 Score=207.03 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=113.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+.+||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...++..|
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~r~~i~~v~Q 422 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGS----LRNQIGLVQQ 422 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHTEEEECS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HhhheEEEeC
Confidence 477899999999999999999999999999999988 8999999998753211000 0011111112
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+. . +....+.+.+.++..++ ....+..+||||||||+++|
T Consensus 423 ~~~l~~~tv~eni~~~---~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i 498 (578)
T 4a82_A 423 DNILFSDTVKENILLG---R-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498 (578)
T ss_dssp SCCCCSSBHHHHHGGG---C-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCcccHHHHHhcC---C-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 1111110 1111111 1 11112334445544443 23345578999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+ ....|+|++||+...... ...++++++.-+...+..+
T Consensus 499 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH----------ADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT----------CSEEEEEETTEEEEEECHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHH
Confidence 9999999999998765555444 344599999999654332 4567888877665443333
No 45
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1.6e-23 Score=207.00 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=113.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~----~r~~i~~v~Q 436 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIRKIKRSS----LRSSIGIVLQ 436 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHHEEEECT
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhhhCCHHH----HHhceEEEeC
Confidence 578999999999999999999999999999999988 8999999998753211000 0011111112
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cc-----------cccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-----------~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+. . +....+.+.+.++..++ .. .....+|||||+||+++|
T Consensus 437 ~~~lf~~tv~eni~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 437 DTILFSTTVKENLKYG---N-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp TCCCCSSBHHHHHHSS---S-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCccccccHHHHHhcC---C-CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 111110 01111111 0 11111234445544444 12 223368999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.....+.+.+. ...|+|++||+...... ...++++++.-+...+..+++
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN----------ADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH----------CSEEEEECSSSEEECSCHHHH
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHHHH
Confidence 89999999999988665555443 44599999999775443 345788887766544433333
No 46
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.86 E-value=2.8e-23 Score=205.21 Aligned_cols=173 Identities=15% Similarity=0.109 Sum_probs=111.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+.. ..+...+++.|
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~v~Q 425 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP-----------ASGTISLDGHDIRQLNPV----WLRSKIGTVSQ 425 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC-----------SEEEEEETTEETTTBCHH----HHHHSEEEECS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCEEhhhCCHH----HHHhceEEEcc
Confidence 367899999999999999999999999999999988 899999999765211100 00011111122
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+..... .....+.+.+.++.+++ ....+..+|||||+||+++|
T Consensus 426 ~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~i 504 (595)
T 2yl4_A 426 EPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKI 504 (595)
T ss_dssp SCCCCSSBHHHHHHTTSSST-TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCcccCCCHHHHHhhcCCCc-cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 111111 011111111000 01223456677777765 12234589999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+.+.+. ...|+|++||+....+.+ ..++++++.-+.
T Consensus 505 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~----------d~i~~l~~G~i~ 560 (595)
T 2yl4_A 505 LLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNA----------NMVAVLDQGKIT 560 (595)
T ss_dssp EEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHS----------SEEEEEETTEEE
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcC----------CEEEEEECCEEE
Confidence 89999999999998666655553 445999999996543333 346677665443
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=3.8e-23 Score=201.13 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
.+..|+++||+||||||||||+++|+|...| .+|.|.+++..+.++...-. ... ...+.+.....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~q~~~-~~~---~~tv~~~l~~~ 354 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKPQRIF-PNY---DGTVQQYLENA 354 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEECSSCC-CCC---SSBHHHHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeechhcc-ccc---CCCHHHHHHHh
Confidence 4678999999999999999999999999988 88999988877765532110 000 01112222111
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~ 206 (317)
.. .... .....+.++++.+++ ..++++.+|||||+||+.|| +++||||++||+.....+
T Consensus 355 ~~--------~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 355 SK--------DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp CS--------STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hh--------hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 10 0000 112346778888888 67889999999999999998 999999999999986555
Q ss_pred HHH---hcc--cCcEEEecCCCCh-hhHHH
Q 021103 207 LHE---YKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 207 l~~---l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
++. +.. ..++|++|||... ..+||
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD 454 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 444 432 2389999999553 34443
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=3e-23 Score=204.50 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~~~~~~~----~r~~i~~v~Q 424 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVRTVKLKD----LRGHISAVPQ 424 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGGGBCHHH----HHHHEEEECS
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcccCCHHH----HHhheEEECC
Confidence 578899999999999999999999999999999988 8999999997653221100 0011111111
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+ .. +....+.+.+.++.. |+ ...++..+||||||||+++|
T Consensus 425 ~~~lf~~tv~eni~~---~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 425 ETVLFSGTIKENLKW---GR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp SCCCCSEEHHHHHTT---TC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCcCcCccHHHHHhc---cC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 1111100 111111 01 111112233333332 33 45677889999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+.....+.+.+. ...|+|++||+...... ...++++++..+...+
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~----------~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL----------ADKILVLHEGKVAGFG 559 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTT----------SSEEEEEETTEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHh----------CCEEEEEECCEEEEEC
Confidence 99999999999998666655543 34599999999654332 3567888877665433
No 49
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.85 E-value=2.6e-21 Score=179.64 Aligned_cols=233 Identities=21% Similarity=0.282 Sum_probs=145.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---------------------CeeEEEecCCCcccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---------------------DTKIQLLDLPGIIEG 122 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---------------------g~~i~~~d~~g~~~~ 122 (317)
+++|+|+||||||||+|+|++....+++|||||++|+.|.+.+. +..+.++|+||+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 68999999999999999999987678999999999999988653 346899999999876
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCccc---ccceeeee
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIY---FKKKKTGG 186 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS---~g~~qr~~ 186 (317)
...+.+...+++..++.+|.+++++|... +..+.+.+...|...++ .+.++...+. .+.+....
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~~ 162 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLP 162 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHHH
Confidence 55555555677778899999999998764 11222333333432222 1111111110 00000000
Q ss_pred eEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccC--CC---hhhHHHH
Q 021103 187 ISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--IG---IDDVDKL 259 (317)
Q Consensus 187 ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~--~~---~~~~~~l 259 (317)
-......+.+.+...... -+-+++.++ ...+.. ....+|+++|.||.|. .. +...+.+
T Consensus 163 ------------~~~~l~~~~~~L~~~~~~--~~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v 227 (368)
T 2dby_A 163 ------------LLEAAEGLYVHLQEGKPA--RTFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAV 227 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCCG--GGSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHH
T ss_pred ------------HHHHHHHHHHHHhcCCCc--ccCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHH
Confidence 001122222222221111 011222111 111111 2346899999999973 22 2333333
Q ss_pred hc-----CCCeEEEeccc----------------------cccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc
Q 021103 260 AR-----QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV 312 (317)
Q Consensus 260 ~~-----~~~~v~iSa~~----------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 312 (317)
.. ...++++||+. +.|+++|.+.+++.|+.+++||+. |+..+|.++++|
T Consensus 228 ~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~~aw~i~~g 303 (368)
T 2dby_A 228 RRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAG----EKEVRAWTVRRG 303 (368)
T ss_dssp HHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEES----SSCEEEEEEETT
T ss_pred HHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCC----CCCcceEEecCC
Confidence 22 24688999876 479999999999999999999964 346689999999
Q ss_pred cee
Q 021103 313 CYI 315 (317)
Q Consensus 313 ~~v 315 (317)
+|+
T Consensus 304 ~ta 306 (368)
T 2dby_A 304 TKA 306 (368)
T ss_dssp CBH
T ss_pred CcH
Confidence 997
No 50
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=179.53 Aligned_cols=238 Identities=17% Similarity=0.218 Sum_probs=130.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGA 123 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~ 123 (317)
.+.+++|+|+||||||||||+|+|....++++||||.+|..|.+.+.+. .+.++|+||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3678999999999999999999998878899999999999999988753 38899999998765
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-----ccccc-CCcccccceeee
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-----RLNKR-PPQIYFKKKKTG 185 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-----~~~~~-~~~LS~g~~qr~ 185 (317)
..+.+...++...++.+|.+++++|... +..+.+.+...|....+ .+.+. ....|+|.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~~~- 179 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKL- 179 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC---------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccchhh-
Confidence 5555555567778899999999998652 22223334333332222 11111 01122332211
Q ss_pred eeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhh--HHHHHhcccceeeeeEEEeccc--CC--ChhhHHHH
Q 021103 186 GISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD--LIDVIEGNRKYMKCVYVYNKID--VI--GIDDVDKL 259 (317)
Q Consensus 186 ~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~--~~~~~~~~~~~~p~i~v~NK~D--~~--~~~~~~~l 259 (317)
.........+...|...+..+-...+++.++ ++..+ ....++|+++++|+.+ .. .+.++..+
T Consensus 180 -----------~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~-~llt~KPviy~~Nv~e~~~~~~~n~~~~~v 247 (396)
T 2ohf_A 180 -----------KPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKH-LFLTSKPMVYLVNLSEKDYIRKKNKWLIKI 247 (396)
T ss_dssp -----------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHH-CCGGGSCEEEEEECCHHHHHHTCCHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHH-HHHhCCceEEEEEecHHHhcccccHHHHHH
Confidence 1112223333333433311110012444442 22222 1235799999999973 32 12223322
Q ss_pred hc-------CCCeEEEecccc---------------------ccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEec
Q 021103 260 AR-------QPNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 311 (317)
Q Consensus 260 ~~-------~~~~v~iSa~~~---------------------~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 311 (317)
.+ ...++++||... .++++|.+..++.|+.+++||+.|. .-+|.++++
T Consensus 248 ~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~----evrawti~~ 323 (396)
T 2ohf_A 248 KEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPD----EVRAWTIRK 323 (396)
T ss_dssp HHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSS----EEEEEEEET
T ss_pred HHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCC----cceeEEecC
Confidence 22 234899999864 4599999999999999999997653 347999999
Q ss_pred ccee
Q 021103 312 VCYI 315 (317)
Q Consensus 312 ~~~v 315 (317)
|+|+
T Consensus 324 g~ta 327 (396)
T 2ohf_A 324 GTKA 327 (396)
T ss_dssp TCBH
T ss_pred CCcH
Confidence 9996
No 51
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=8.3e-21 Score=176.41 Aligned_cols=163 Identities=26% Similarity=0.319 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d 141 (317)
.+++|+|+||||||||+|+|+|....+++++|+|+++..|.+.++|.++.++||+|+........ .........+..+|
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 35999999999999999999999888899999999999999999999999999999865432221 22233445677899
Q ss_pred EEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++|...+.. ....+.. ..++++.+.
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~-----------------------------------------~~~~L~~l~--------- 289 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQS-----------------------------------------SFEILREIG--------- 289 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHH-----------------------------------------HHHHHHHHT---------
T ss_pred EEEEEEECCCCcchHHHHHHH-----------------------------------------HHHHHHHhC---------
Confidence 9999999865431 1111110 111222111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhH---HHH----hc----CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DKL----AR----QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~---~~l----~~----~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
....|+++|.||+|+.+.... ..+ .. .+..+++||+++.|++.|.+.|.+.+..
T Consensus 290 ---------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 ---------------VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ---------------CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---------------cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 014789999999999864311 111 11 1246899999999999999999887754
Q ss_pred e
Q 021103 290 V 290 (317)
Q Consensus 290 ~ 290 (317)
-
T Consensus 355 ~ 355 (364)
T 2qtf_A 355 L 355 (364)
T ss_dssp H
T ss_pred c
Confidence 3
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=1.1e-22 Score=198.11 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=98.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|+++||+|+||||||||+++|+|...| .+|.|.+ ...+.++....... . .. .+........
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~-~~~i~~v~Q~~~~~-~--~~-tv~~~~~~~~ 372 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEW-DLTVAYKPQYIKAD-Y--EG-TVYELLSKID 372 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCC-CCCEEEECSSCCCC-C--SS-BHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEE-CceEEEEecCCcCC-C--CC-cHHHHHHhhh
Confidence 478999999999999999999999999988 6777766 33344432110000 0 00 0111111000
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
. . .....+.+.++|+.+++ ..++++.+|||||+||+.|| +++||||++||+.....++
T Consensus 373 ~--------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 373 A--------S---KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp H--------H---HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred c--------c---CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 0 00113456778899998 67889999999999999998 9999999999999866555
Q ss_pred HHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 208 HEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 208 ~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
+.+. . ..++|++|||... ..+||
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 470 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHDVLMIDYVSD 470 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 5443 2 3499999999543 34443
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.84 E-value=1.5e-22 Score=199.37 Aligned_cols=140 Identities=12% Similarity=0.156 Sum_probs=96.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|+++||+||||||||||+++|+|...| .+|.|.+ ...+.++....... . .. .+........
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~-~~~i~~v~Q~~~~~-~--~~-tv~e~~~~~~ 442 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEW-DLTVAYKPQYIKAE-Y--EG-TVYELLSKID 442 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCC-CCCEEEECSSCCCC-C--SS-BHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEE-eeEEEEEecCccCC-C--CC-cHHHHHHhhh
Confidence 578999999999999999999999999988 6777766 23344432110000 0 00 0111111100
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
. . .....+.+.++|+.+++ ..++++.+|||||+||+.|| +++||||++||+.....++
T Consensus 443 ~--------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 443 S--------S---KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp H--------H---HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred c--------c---CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 0 0 00113456788999998 67889999999999999998 9999999999999865555
Q ss_pred HHhc----c-cCcEEEecCCCCh
Q 021103 208 HEYK----I-HNAEVLFREDATV 225 (317)
Q Consensus 208 ~~l~----~-~~~~i~~shd~~~ 225 (317)
+.+. . ..++|++|||...
T Consensus 512 ~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH
Confidence 5443 2 3499999999554
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=7.7e-22 Score=209.89 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=126.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.|...| .+|.|.++|.++.-++... .+..++.++|
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~----lR~~i~~V~Q 1160 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEH----TRSQIAIVSQ 1160 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHH----HHTTEEEECS
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHH----HHhheEEECC
Confidence 478999999999999999999999999999999988 8999999998764333211 1122223333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+..+. .....+.+.+.++..++ .....-.+||||||||++||
T Consensus 1161 dp~LF~gTIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1161 EPTLFDCSIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp SCCCCSEEHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCEeeCccHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 3222221 2333222222 12234456777776665 12223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+++||||++||.++-..+.+.+. ...|+|+++|....-. ....|+|+.++-++..+..+++.+.
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~----------~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM----------NADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT----------TCSEEEEESSSSEEEEECHHHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999998666666665 3459999999854322 3567999999888766666665543
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.82 E-value=1e-21 Score=191.30 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE---------EECCeeEEEecCCCccccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i---------~~~g~~i~~~d~~g~~~~~ 123 (317)
.+++ .+.+|+++||+|+||||||||+++|+|...| .+|.+ .+.|..+.....+.. ..
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-----------~~G~~~~~~~~~~~~~~g~~~~~~~~~~~--~~ 104 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-----------NLCGDNDSWDGVIRAFRGNELQNYFEKLK--NG 104 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSHHHHHHHTTTSTHHHHHHHHH--TT
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccCcchhhhHHhhCCccHHHHHHHHH--HH
Confidence 4556 6788999999999999999999999999887 44432 112211100000000 00
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....++..|........ ....+.+........+++.++|+.+++ ..++++.+|||||+||+.|| |++|
T Consensus 105 ~~~~~~~~q~~~~~~~~-~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 105 EIRPVVKPQYVDLIPKA-VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp SCCCEEECSCGGGSGGG-CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhhhhhhhhhhhhcchh-hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 00000000000000000 000000000000011246778999998 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
|||++||+.....+ ++.+... .++|++|||.. +..+||+
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999985554 4444433 49999999944 3444444
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-20 Score=185.25 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=95.9
Q ss_pred CCcEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGH-----GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g-----~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++.+..| +++||+||||||||||+++|+|+..| .+|.. +.+..+.++... +.....
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~~-~~~~~i~~~~q~-~~~~~~--- 427 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----------DEGQD-IPKLNVSMKPQK-IAPKFP--- 427 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----------SBCCC-CCSCCEEEECSS-CCCCCC---
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCcC-ccCCcEEEeccc-ccccCC---
Confidence 3577777777 78999999999999999999999988 44431 112223222110 000000
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
..+.+.... . . .........+.++++.+++ ..++++.+|||||+||+.|| |++||||+
T Consensus 428 ~tv~e~~~~-~--------~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFK-K--------I--RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHH-H--------C--SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHH-H--------h--hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 001111100 0 0 0111123456678889998 68899999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhc-c-cCcEEEecCCCChh
Q 021103 197 HVDEKLCYQI---LHEYK-I-HNAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~-~-~~~~i~~shd~~~~ 226 (317)
+||+.....+ ++.+. . ..++|++|||....
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999876554 44443 2 34999999995533
No 57
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=1.3e-19 Score=170.76 Aligned_cols=175 Identities=29% Similarity=0.425 Sum_probs=128.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++++..++.++|+|+||||||||||+|++..+.+++||+||+.|..|.+.+++ ..+.+.|+||+............
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~ 227 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL 227 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH
Confidence 47888888899999999999999999999999987789999999999999999986 78899999998764433333333
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
.+......++.++++++.. .. ++.+||++++|+..++ .
T Consensus 228 ~fl~~~era~~lL~vvDls-~~-------------------~~~~ls~g~~el~~la-------------------~--- 265 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA-DE-------------------PLKTLETLRKEVGAYD-------------------P--- 265 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT-SC-------------------HHHHHHHHHHHHHHHC-------------------H---
T ss_pred HHHHHHHHHHhhhEEeCCc-cC-------------------CHHHHHHHHHHHHHHh-------------------H---
Confidence 4445566789999999875 11 0112333333332210 0
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH----hc-CCCeEEEeccccccHHHHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----AR-QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l----~~-~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. ....|.++|+||+|+...+.++.+ .. ...++++||+++.|+++|++.|.+.
T Consensus 266 -------------------a----L~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 266 -------------------A----LLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp -------------------H----HHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -------------------H----hhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 0 013799999999999876433322 12 2368899999999999999999998
Q ss_pred hCeeEE
Q 021103 287 MGLVRV 292 (317)
Q Consensus 287 l~~~~~ 292 (317)
+...+.
T Consensus 323 l~~~~~ 328 (416)
T 1udx_A 323 VRSTPP 328 (416)
T ss_dssp HHTSCC
T ss_pred HHhccc
Confidence 865443
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=2.3e-21 Score=188.57 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH---HHHHhcccCcEEEecCCC
Q 021103 158 ILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 158 ~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~---~l~~l~~~~~~i~~shd~ 223 (317)
.+.++++.+++ ..++++.+|||||+||+.|| +++||||++||+..... +++.+....++|++|||.
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl 197 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh
Confidence 45678889998 67889999999999999998 99999999999987554 455554444999999995
Q ss_pred C-hhhHHHH
Q 021103 224 T-VDDLIDV 231 (317)
Q Consensus 224 ~-~~~~~~~ 231 (317)
. +..+||.
T Consensus 198 ~~~~~~~d~ 206 (538)
T 3ozx_A 198 IVLDYLTDL 206 (538)
T ss_dssp HHHHHHCSE
T ss_pred HHHHhhCCE
Confidence 4 4444443
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.7e-21 Score=189.24 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH---HHHHhcccC-cEEEecC
Q 021103 157 QILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKIHN-AEVLFRE 221 (317)
Q Consensus 157 ~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~---~l~~l~~~~-~~i~~sh 221 (317)
..+.++|+.+++ ..++++.+|||||+||++|| +++||||++||+..... +++.+...+ ++|++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 567888999999 78899999999999999998 99999999999987554 455554434 9999999
Q ss_pred CCC-hhhHHHH
Q 021103 222 DAT-VDDLIDV 231 (317)
Q Consensus 222 d~~-~~~~~~~ 231 (317)
|.. +..++|+
T Consensus 280 dl~~~~~~~dr 290 (608)
T 3j16_B 280 DLSVLDYLSDF 290 (608)
T ss_dssp CHHHHHHHCSE
T ss_pred CHHHHHHhCCE
Confidence 944 4444444
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=2.4e-21 Score=190.82 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=92.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE---------EECCeeEEEecCCCcccccc
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i---------~~~g~~i~~~d~~g~~~~~~ 124 (317)
+++ .+.+|+++||+||||||||||+++|+|...| .+|.+ .+.|..+...... ... ..
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-----------~~G~~~~~~~~~~~~~~G~~~~~~~~~-~~~-~~ 175 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----------NLCEDNDSWDNVIRAFRGNELQNYFER-LKN-GE 175 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTTTCCCHHHHHHHTTTSTHHHHHHH-HHH-TS
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-----------CCCccccccchhhheeCCEehhhhhhh-hhh-hh
Confidence 455 6778999999999999999999999999987 44442 1122111000000 000 00
Q ss_pred CCchhHHHHHhhhccC--cEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 125 EGKGRGRQVIAVSKSS--DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~--d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
...++..|........ ..+...+... ...+.+.++|+.+++ ..++++.+|||||+||++|| |++
T Consensus 176 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 176 IRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp CCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred cceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000000000000000 0000000000 011246778999999 67889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc-cCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~-~~~~i~~shd~~~ 225 (317)
||||++||+.....+ ++.+.. ..++|++|||...
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 999999999985554 444433 3499999999543
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=4.2e-21 Score=203.79 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+. ...+...++++|
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~~~~~----~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIKQLNV----QWLRAQLGIVSQ 1114 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTTSSCH----HHHTTSCEEEES
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcccCCH----HHHHhceEEECC
Confidence 578899999999999999999999999999999988 89999999976532111 011122222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.... .....+.+.+.++..++ .......+||||||||++||
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~--~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNS--RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSS--CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCccccccHHHHHhccCCC--CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 2211110 1111111100 01112234444444433 22334568999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.+...+.+.+ ....|+|++|||...... ...|+|+.+.-+...+..+++
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~----------~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN----------ADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS----------CSEEEEEETBEEEEEECHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHHHH
Confidence 9999999999998855555444 334499999999664332 456888887766544433333
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=1.2e-20 Score=192.64 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=59.5
Q ss_pred HHHHHHHHHccc-c---ccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCC
Q 021103 157 QILTKELEAVGL-R---LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFRED 222 (317)
Q Consensus 157 ~~~~~~L~~~~l-~---~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd 222 (317)
..+.+.|+.+|+ . .++++..|||||+||+.|| |++||||++||+.....+++.+... +++|++|||
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD 957 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSC
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECC
Confidence 467888999999 2 4778999999999999998 9999999999999988888887753 599999999
Q ss_pred CCh
Q 021103 223 ATV 225 (317)
Q Consensus 223 ~~~ 225 (317)
.+.
T Consensus 958 ~e~ 960 (986)
T 2iw3_A 958 AEF 960 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=1.4e-20 Score=188.40 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCC
Q 021103 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFRED 222 (317)
Q Consensus 161 ~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd 222 (317)
..|+.+|+ ..++++.+|||||+||+.|| +++||||++||+.....+ ++.+...+ |+|++|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34778888 26889999999999999988 899999999999875554 44444334 99999999
Q ss_pred CChhhHHH
Q 021103 223 ATVDDLID 230 (317)
Q Consensus 223 ~~~~~~~~ 230 (317)
..+...+|
T Consensus 264 ~~~~~~~d 271 (670)
T 3ux8_A 264 EDTMLAAD 271 (670)
T ss_dssp HHHHHHCS
T ss_pred HHHHhhCC
Confidence 66544443
No 64
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=2.7e-19 Score=148.73 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSK 138 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~ 138 (317)
++.+++|+|+||||||||+|+|++...+ ++++|+||++...+.+.++|.++.++||||+......... ........++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3678999999999999999999998754 7889999999999999999999999999998542111000 0112233567
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|......... ..++..
T Consensus 83 ~ad~~i~v~D~~~~~s~~~--~~~~~~----------------------------------------------------- 107 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP--AEIWPE----------------------------------------------------- 107 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH--HHHCHH-----------------------------------------------------
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHH-----------------------------------------------------
Confidence 8999999998764321100 000000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH-hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l-~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+.+. .....|+++|.||+|+..... +.. ......+.+||+++.|++++.+.|.+.+..
T Consensus 108 ---------~~~~---~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 108 ---------FIAR---LPAKLPITVVRNKADITGETL-GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---------HHHH---SCTTCCEEEEEECHHHHCCCC-EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ---------HHHh---cccCCCEEEEEECccCCcchh-hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 0000 012479999999999853211 100 112357889999999999999999887753
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=1.4e-20 Score=199.81 Aligned_cols=173 Identities=12% Similarity=0.129 Sum_probs=110.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++... .+...+++.|
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~~~~~~~----~r~~i~~v~Q 471 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIRTINVRY----LREIIGVVSQ 471 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHHEEEECS
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHHhCCHHH----HHhheEEEcC
Confidence 468899999999999999999999999999999988 8999999998753221100 0001111111
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHcc-----------c--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVG-----------L--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~-----------l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... ....+.+.+.++..+ + ....+..+||||||||++||
T Consensus 472 ~~~l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i 547 (1284)
T 3g5u_A 472 EPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547 (1284)
T ss_dssp SCCCCSSCHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCCccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE
Confidence 1111100 111111110 011122333332222 2 34456679999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+++...+.+.+ ....|+|++||+..... ....|+|+++.-+...+
T Consensus 548 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~----------~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR----------NADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp EEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT----------TCSEEEECSSSCCCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEEEEC
Confidence 9999999999998755544444 34459999999954332 24568888888777543
No 66
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.79 E-value=2.5e-19 Score=164.96 Aligned_cols=169 Identities=28% Similarity=0.404 Sum_probs=124.1
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|+|+|.+|||||||+|+|++..+.+++|||||++|..|.+.+++ ..+.++|+||+........+...++
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~f 230 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQF 230 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHH
Confidence 334444456799999999999999999999887789999999999999999986 7899999999876544444455666
Q ss_pred HhhhccCcEEEEEecCCC---ch--hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHH
Q 021103 134 IAVSKSSDIVLMVLDASK---SE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILH 208 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~---~~--~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~ 208 (317)
+..+..++++++++|... .. .+...+...|..+.
T Consensus 231 l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~----------------------------------------- 269 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN----------------------------------------- 269 (342)
T ss_dssp HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-----------------------------------------
T ss_pred HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh-----------------------------------------
Confidence 667778999999999864 11 11111111111110
Q ss_pred HhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc-C---CCeEEEeccccccHHHHHHHH
Q 021103 209 EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR-Q---PNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 209 ~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~-~---~~~v~iSa~~~~~i~~l~~~i 283 (317)
.....+|+++|+||+|+.... ..+.+.+ . ..++++||+++.|+++|.+.|
T Consensus 270 -------------------------~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l 324 (342)
T 1lnz_A 270 -------------------------LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 324 (342)
T ss_dssp -------------------------SSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHH
T ss_pred -------------------------hhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHH
Confidence 001247999999999998653 2333322 2 467899999999999999999
Q ss_pred HHHhCe
Q 021103 284 WEEMGL 289 (317)
Q Consensus 284 ~~~l~~ 289 (317)
.+.+..
T Consensus 325 ~~~l~~ 330 (342)
T 1lnz_A 325 ANQLEN 330 (342)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 998864
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.79 E-value=1.1e-20 Score=201.16 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=115.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+.+||+||+|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~~~~~~~l----r~~i~~v~Q 499 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVRDINLEFL----RKNVAVVSQ 499 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHH----HHHEEEECS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccchhccHHHH----hhcccccCC
Confidence 478899999999999999999999999999999988 89999999987542221100 011111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .....-.+||||||||++||
T Consensus 500 ~~~Lf~~TI~eNI~~g----~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 500 EPALFNCTIEENISLG----KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp SCCCCSEEHHHHHHTT----CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred cceeeCCchhHHHhhh----cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence 1111111 1222211 111223445555555443 23445578999999999999
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~---~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++|||||+||.++... .+..+....|+|+++|+...-. ....|+|+++.-++..+.
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~----------~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR----------NADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT----------TCSEEEEEETTEEEEEEC
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH----------hCCEEEEeeCCeeeccCC
Confidence 99999999999876444 4444445569999999965433 356788998887765433
No 68
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=4.2e-18 Score=163.49 Aligned_cols=154 Identities=27% Similarity=0.308 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCchh-HHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGR-GRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~~-~~~~~~~~~ 138 (317)
+.+|+|+|+||||||||+|+|++... .++++||||+++..+.+.++|.++.++||||+. ......... .......+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 56899999999999999999999874 589999999999999999999999999999987 432211111 123345668
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|......... .+++ +
T Consensus 323 ~aD~vl~VvD~s~~~s~~~--~~il--------------------------------------------~---------- 346 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEED--RKIL--------------------------------------------E---------- 346 (482)
T ss_dssp HCSEEEEEEETTSCCCHHH--HHHH--------------------------------------------H----------
T ss_pred cccEEEEEecCCCCCCHHH--HHHH--------------------------------------------H----------
Confidence 8999999999765422111 0011 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.+ ..+|+++|+||+|+... +++.....+ .+++.+||+++.|+++|.+.|.+.+
T Consensus 347 ------------~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 347 ------------RI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp ------------HH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred ------------Hh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 01 14799999999999753 223222222 4689999999999999999998864
No 69
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=3.8e-19 Score=157.62 Aligned_cols=151 Identities=22% Similarity=0.297 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC----Cch-hHHHHHhhhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE----GKG-RGRQVIAVSK 138 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~~-~~~~~~~~~~ 138 (317)
+|+|+|.+|||||||+|.|+|....++++|++|++...|.+.++|..+.++||||....... ... ..........
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 82 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL 82 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence 79999999999999999999998789999999999999999999999999999998654321 111 1111122236
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|+....... .+...
T Consensus 83 ~~d~vi~VvDas~~~~~~-~l~~~-------------------------------------------------------- 105 (256)
T 3iby_A 83 EYDCIINVIDACHLERHL-YLTSQ-------------------------------------------------------- 105 (256)
T ss_dssp CCSEEEEEEEGGGHHHHH-HHHHH--------------------------------------------------------
T ss_pred CCCEEEEEeeCCCchhHH-HHHHH--------------------------------------------------------
Confidence 799999999986532111 01000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|+++|+||+|+.... ..+.+.+ ..+++++||++|.|+++|.+.|.+.
T Consensus 106 -------------l~--~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 -------------LF--ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -------------HT--TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -------------HH--HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 00 1147999999999986432 1222322 2578999999999999999999876
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=7.5e-19 Score=157.26 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC----Cch-hHHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE----GKG-RGRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~~-~~~~~~~~~ 137 (317)
.+|+|+|.+|||||||+|+|+|....++++|++|++...|.+.+++.++.++||||..+.... ... .........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 479999999999999999999998779999999999999999999999999999998654321 110 111222234
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.......... ..+
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~-~~l------------------------------------------------------ 108 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLT-LQL------------------------------------------------------ 108 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHH-HHH------------------------------------------------------
T ss_pred cCCCEEEEEecCCChHHHHHHH-HHH------------------------------------------------------
Confidence 6899999999976422111100 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ....|+++|+||+|+.... ..+.+.+ ..+++++||++|.|+++|.+.|.+.+.
T Consensus 109 ---------------~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 109 ---------------L--ELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ---------------H--HHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred ---------------H--hcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 0 0147999999999986432 1222222 256899999999999999999988765
No 71
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=3.5e-18 Score=154.87 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=113.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~ 140 (317)
+|+|+|+||||||||+|+|+|.... +++.|+||++...|.+..++.++.++||||+.+... ... +.......++.+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~-~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD-ALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-HHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-HHHHHHHHHHHHHHhcC
Confidence 7999999999999999999998764 789999999999998888899999999999865321 111 122334567889
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|+....... ..+.+.+.
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~------------------------------------------------------- 112 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALK------------------------------------------------------- 112 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHG-------------------------------------------------------
T ss_pred CEEEEEEECCCCCChHHHHHHHHHH-------------------------------------------------------
Confidence 9999999986532211 11111110
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HH-HHh---cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VD-KLA---RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~-~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
......|+++|+||+|+..... +. .+. .+..++++||++|.|++.|.+.|.+.+..
T Consensus 113 --------------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 113 --------------PLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp --------------GGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred --------------hhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 0001479999999999986543 32 222 23457999999999999999999987753
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=6.2e-18 Score=139.29 Aligned_cols=153 Identities=25% Similarity=0.321 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+++|+|+||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||.......... ...........++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 83 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCC
Confidence 479999999999999999999988778899999999999999999999999999997643211100 0111111123689
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|...... ...++..
T Consensus 84 ~~i~v~D~~~~~~----~~~~~~~-------------------------------------------------------- 103 (165)
T 2wji_A 84 LVVNIVDATALER----NLYLTLQ-------------------------------------------------------- 103 (165)
T ss_dssp EEEEEEETTCHHH----HHHHHHH--------------------------------------------------------
T ss_pred EEEEEecCCchhH----hHHHHHH--------------------------------------------------------
Confidence 9999998764211 1111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+. ....|+++|.||+|+.... +.+.+.+ ....+.+||++|.|++++.+.+.+.+
T Consensus 104 ----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 104 ----------LM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ----------HH--HTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ----------HH--hcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 00 0147999999999985321 1222222 24688999999999999999998765
No 73
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=8.7e-18 Score=152.84 Aligned_cols=158 Identities=28% Similarity=0.312 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEEC-CeeEEEecCCCcccccc-CC--chhHHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGAS-EG--KGRGRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~-~~--~~~~~~~~~~~ 137 (317)
..|+|+|++|||||||+|.|+|.... ++++|+||++...|.+..+ +.++.++||||+.+... .. ..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 48999999999999999999998764 7899999999999999998 99999999999865331 11 11122334456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+........ ...++ +.+.
T Consensus 91 ~~aD~il~VvD~~~~~~~~~-~~~~~--------------------------------------------~~l~------ 119 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRD-EEIYQ--------------------------------------------NFIK------ 119 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHH-HHHHH--------------------------------------------HHTG------
T ss_pred hcCCEEEEEEeCCCCCCchh-HHHHH--------------------------------------------HHHH------
Confidence 78999999999865422111 00001 1111
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh----cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~----~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
....|+++|+||+|+. ..+... .+. .+..++++||.+|.|+++|.+.|.+.+.
T Consensus 120 ------------------~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 120 ------------------PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ------------------GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ------------------hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 0247999999999998 443322 222 3467999999999999999999999885
Q ss_pred e
Q 021103 289 L 289 (317)
Q Consensus 289 ~ 289 (317)
.
T Consensus 182 ~ 182 (308)
T 3iev_A 182 E 182 (308)
T ss_dssp B
T ss_pred c
Confidence 4
No 74
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=1.5e-18 Score=157.47 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=110.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCch--hHHHHHhhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKG--RGRQVIAVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~--~~~~~~~~~ 137 (317)
..+|+|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+. .... ... +.......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~-~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR-AINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH-HHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh-hHHHHHHHHHHHHH
Confidence 34899999999999999999999875 478899999999999999999999999999985 2110 000 011122345
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.........+.+ .
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~-----------------------------------------------~-------- 111 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLN-----------------------------------------------K-------- 111 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHH-----------------------------------------------H--------
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHH-----------------------------------------------H--------
Confidence 678999998887541111111111 0
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCC-hhhH----HHHhcC---CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDV----DKLARQ---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~~~~----~~l~~~---~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+. ....|.++|+||+|+.. ...+ ..+.+. ..++++||+++.|++.|.+.|.+.++.
T Consensus 112 --------------l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 112 --------------LR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp --------------HH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred --------------HH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 10 12479999999999987 3332 233332 348999999999999999999987753
No 75
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=7.2e-18 Score=160.66 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~ 139 (317)
.+|+|+|.||+|||||+|.|+|.... ++++||+|++...+.+.++|..+.++||||+........ .+..+....++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999998754 899999999999999999999999999999864322211 123344556788
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+.++|.
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~------------------------------------------------------ 107 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLR------------------------------------------------------ 107 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHH------------------------------------------------------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH------------------------------------------------------
Confidence 9999999997643221 111111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh--hhH-HHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~-~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...+|+++|+||+|+... ... ..+.+ ...++++||.+|.|+++|.+.|.+.+.
T Consensus 108 -----------------~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 108 -----------------KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp -----------------HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 014799999999998643 112 22322 346899999999999999999988774
No 76
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.76 E-value=1.5e-17 Score=159.50 Aligned_cols=159 Identities=24% Similarity=0.208 Sum_probs=92.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~ 139 (317)
+.+|+|+|++|||||||+|.|++... .++++|+||++...+.+.++|.++.++||||+.+........ .......+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 56799999999999999999999864 589999999999999999999999999999986522111000 1123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|......... +.. ...+++.
T Consensus 313 aD~vl~VvD~s~~~s~~~-~~~-----------------------------------------~~~~l~~---------- 340 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDE-LTE-----------------------------------------IRELKAA---------- 340 (476)
T ss_dssp CSEEEEEEETTTCSSGGG-HHH-----------------------------------------HHHHHHH----------
T ss_pred CCEEEEEEECCCCcchhh-hHH-----------------------------------------HHHHHHh----------
Confidence 999999999865432110 000 0111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH--HHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--KLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~--~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ..|+++|+||+|+......+ .+.+ +.+++++||++|.|+++|.+.|.+.+.
T Consensus 341 ------------l~----~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 341 ------------HP----AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------------CT----TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------------cC----CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 37999999999998654332 2332 467899999999999999999988774
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.76 E-value=1.4e-19 Score=181.15 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=54.9
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHH---HhcccC-cEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYKIHN-AEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~---~l~~~~-~~i~ 218 (317)
...+.|..+++ ..++++.+|||||+||++|| +++||||++||+.....+++ .+...+ |+|+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45567778887 35788999999999999887 78999999999988655544 444334 9999
Q ss_pred ecCCCChhh
Q 021103 219 FREDATVDD 227 (317)
Q Consensus 219 ~shd~~~~~ 227 (317)
+|||.....
T Consensus 602 vtHd~~~~~ 610 (670)
T 3ux8_A 602 IEHNLDVIK 610 (670)
T ss_dssp ECCCHHHHT
T ss_pred EeCCHHHHH
Confidence 999976443
No 78
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=8.1e-18 Score=160.33 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=102.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC---ch--hHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG---KG--RGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~~--~~~~~~~ 135 (317)
..+++|+|+||||||||+|+|+|.... ++++|+||+++..|.+.++|.++.++||+|+....... .. .......
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 458999999999999999999998764 89999999999999999999999999999985322110 00 0112234
Q ss_pred hhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 136 VSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
.+..+|++++++|+....... ..+...+.
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~-------------------------------------------------- 289 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLME-------------------------------------------------- 289 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHH--------------------------------------------------
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHH--------------------------------------------------
Confidence 556789999988875432111 11111111
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HH----HH----h--cCCCeEEEeccccccHHHHHHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VD----KL----A--RQPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~----~l----~--~~~~~v~iSa~~~~~i~~l~~~ 282 (317)
...+|+++|+||+|+..... .+ .+ . .+.+++++||++|.|+++|.+.
T Consensus 290 ---------------------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 348 (439)
T 1mky_A 290 ---------------------RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 348 (439)
T ss_dssp ---------------------HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred ---------------------HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHH
Confidence 12479999999999975322 11 11 1 2357899999999999999999
Q ss_pred HHHHh
Q 021103 283 MWEEM 287 (317)
Q Consensus 283 i~~~l 287 (317)
+.+.+
T Consensus 349 i~~~~ 353 (439)
T 1mky_A 349 MNLAY 353 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97765
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.75 E-value=1.8e-19 Score=184.09 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|-.. ...+.. . ..+.+++. . +...+.. ... +.+
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~-~--~~~~~~v~-q-----~~~~~~~----~lt-v~e 515 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQ-E--ECRTVYVE-H-----DIDGTHS----DTS-VLD 515 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCT-T--TSCEEETT-C-----CCCCCCT----TSB-HHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCccc-c--ceeEEEEc-c-----ccccccc----CCc-HHH
Confidence 46788899999999999999999999999995221 111100 0 00111110 0 0001100 000 111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.... . .... .+++.+.|+.+|+ ..++++.+|||||+||+.|| +++||||++||+
T Consensus 516 ~l~~-~----------~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 516 FVFE-S----------GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp HHHT-T----------CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred HHHH-h----------hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 1110 0 0011 4567889999998 46889999999999999998 999999999999
Q ss_pred HHHHHHHHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 201 KLCYQILHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 201 ~~~~~~l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
.....+++.+...+ ++|++|||.. +.+++|+
T Consensus 582 ~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adr 614 (986)
T 2iw3_A 582 VNVAWLVNYLNTCGITSITISHDSVFLDNVCEY 614 (986)
T ss_dssp HHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 99777777665444 9999999944 4455554
No 80
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=2.9e-16 Score=145.67 Aligned_cols=162 Identities=26% Similarity=0.360 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHH-hhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVI-AVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~-~~~~~ 139 (317)
..+++++|+||||||||+|.|+|....++++|++|.++..+.+..++..+.++||||+......... ...+.. .....
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 4689999999999999999999988668889999999999999888899999999998653221111 111222 22335
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+... .++|.+....++..+.
T Consensus 247 ad~illV~D~s~~-------------------------------------------~~~~~~~~~~~~~~i~-------- 275 (357)
T 2e87_A 247 GNLIIYIFDPSEH-------------------------------------------CGFPLEEQIHLFEEVH-------- 275 (357)
T ss_dssp CSEEEEEECTTCT-------------------------------------------TSSCHHHHHHHHHHHH--------
T ss_pred CCEEEEEEeCCcc-------------------------------------------ccCCHHHHHHHHHHHH--------
Confidence 7888888886432 2223333223322221
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh-----cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA-----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~-----~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .. ...|+++|+||+|+.....++... ...+++.+||++|.|+++|.+.|.+.+.
T Consensus 276 ----------~-~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 276 ----------G-EF---KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ----------H-HT---TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ----------H-hc---CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 0 00 147999999999998765443221 2346889999999999999999988763
No 81
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=5.6e-18 Score=151.38 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 140 (317)
.+|+|+|+||||||||+|+|+|....++++||+|++...|.+.. +..+.++||||......... .....++ ....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL-LSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH-hcCCC
Confidence 47999999999999999999998878999999999999998876 78899999999865322111 1111111 12469
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|+...... ..+...
T Consensus 82 d~vi~V~D~t~~e~~----~~~~~~------------------------------------------------------- 102 (272)
T 3b1v_A 82 DSILNVVDATNLERN----LYLTTQ------------------------------------------------------- 102 (272)
T ss_dssp SEEEEEEEGGGHHHH----HHHHHH-------------------------------------------------------
T ss_pred CEEEEEecCCchHhH----HHHHHH-------------------------------------------------------
Confidence 999999987542111 100000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||++|.|++++.+.|.+.+.
T Consensus 103 -----------l~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 103 -----------LI--ETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp -----------HH--HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred -----------HH--hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 00 0147999999999986321 2222222 246899999999999999999988653
No 82
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.75 E-value=1.4e-17 Score=147.64 Aligned_cols=154 Identities=26% Similarity=0.310 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d 141 (317)
.+|+|+|.+|||||||+|.|+|....++++||+|++...|.+.+.+..+.++||||........... ....+.....+|
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 85 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDAD 85 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCC
Confidence 4799999999999999999999887789999999999999999999999999999986543221110 111111225789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+............
T Consensus 86 ~ii~V~D~t~~~~~~~~~~~------------------------------------------------------------ 105 (258)
T 3a1s_A 86 LVILVADSVNPEQSLYLLLE------------------------------------------------------------ 105 (258)
T ss_dssp EEEEEEETTSCHHHHHHHHH------------------------------------------------------------
T ss_pred EEEEEeCCCchhhHHHHHHH------------------------------------------------------------
Confidence 99999998754221111000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||+++.|+++|.+.|.+.+.
T Consensus 106 ----------l~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 106 ----------IL--EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ----------HH--TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HH--hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 00 0147999999999986321 1223322 246899999999999999999988653
No 83
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.74 E-value=2.1e-17 Score=157.94 Aligned_cols=156 Identities=22% Similarity=0.285 Sum_probs=107.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~ 139 (317)
+.+|+|+|++|||||||+|.|+|... .++++|+||++.....+.++|.++.++||||+.+........ .......+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 56799999999999999999999864 488999999999999999999999999999985422111100 1223345677
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|...+..... .+ +++.
T Consensus 304 aD~vl~VvD~s~~~~~~~--~~--------------------------------------------i~~~---------- 327 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGD--QE--------------------------------------------IYEQ---------- 327 (462)
T ss_dssp CSEEEEEEETTTCSCHHH--HH--------------------------------------------HHHH----------
T ss_pred CCEEEEEeccCCCCCHHH--HH--------------------------------------------HHHh----------
Confidence 999999999765422111 11 1111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l---~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+. ..|+++|+||+|+........+ ....+.+.+||+++.|+++|.+.|.+.+..
T Consensus 328 ------------l~----~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 328 ------------VK----HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp ------------HT----TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred ------------cc----CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11 2699999999999876543322 233568999999999999999999988753
No 84
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=7.4e-17 Score=131.26 Aligned_cols=154 Identities=22% Similarity=0.290 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
.+++++|++|+|||||+|.+.+.... +++++++|.+.....+.+++..+.++||||..................++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 37899999999999999999987754 78899999999999999999999999999975432111111222334567899
Q ss_pred EEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
.+++++|....... ...+..++..
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~------------------------------------------------------- 106 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRR------------------------------------------------------- 106 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHH-------------------------------------------------------
T ss_pred EEEEEEECCCcccHhHHHHHHHHHh-------------------------------------------------------
Confidence 99999987653221 1111111100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
...|+++|.||+|+.... +...+.+ ....+.+||+++.|++++.+.+.+.+
T Consensus 107 ----------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 ----------------KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----------------HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----------------cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 147999999999997542 2223322 23679999999999999999998765
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=2.3e-17 Score=147.21 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+|+|+|++|||||||+|+|+|....++++|++|.+...+.+.+++..+.++||||.......... ...........+|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 479999999999999999999998888999999999999999999999999999998653322211 1111222336799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+.............+
T Consensus 84 ~vi~v~D~~~~~~~~~~~~~~~---------------------------------------------------------- 105 (271)
T 3k53_A 84 VIVDIVDSTCLMRNLFLTLELF---------------------------------------------------------- 105 (271)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHH----------------------------------------------------------
T ss_pred EEEEEecCCcchhhHHHHHHHH----------------------------------------------------------
Confidence 9999998764321111100000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ....|+++|+||+|+.... ....+.+ ..+++++||.++.|++++.+.+.+.+.
T Consensus 106 ------------~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 106 ------------E-MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ------------H-TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------h-cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0 0127999999999976432 1222222 256899999999999999999988763
No 86
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=4.6e-17 Score=136.30 Aligned_cols=156 Identities=25% Similarity=0.297 Sum_probs=108.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+++|+|++|||||||+|.|+|....++++|++|.++..+.+.+++..+.++||||.......... ...........++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 87 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCC
Confidence 479999999999999999999987678889999999999999999999999999997543211100 0111111113588
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..... ....++..
T Consensus 88 ~~i~v~d~~~~~----~~~~~~~~-------------------------------------------------------- 107 (188)
T 2wjg_A 88 LVVNIVDATALE----RNLYLTLQ-------------------------------------------------------- 107 (188)
T ss_dssp EEEEEEEGGGHH----HHHHHHHH--------------------------------------------------------
T ss_pred EEEEEecchhHH----HHHHHHHH--------------------------------------------------------
Confidence 888888865321 11111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
+. ....|+++|.||+|+.... ..+.+.+ ....+++||+++.|++++.+.|.+.+...
T Consensus 108 ----------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 108 ----------LM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ----------HH--TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ----------HH--hcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 00 0147899999999986432 2233322 24688999999999999999998887643
No 87
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.71 E-value=8.3e-17 Score=138.65 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEE-ECCeeEEEecCCCccccccCCc------hhHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGK------GRGRQ 132 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~------~~~~~ 132 (317)
..+|+|+|.+|||||||+|.|+|.. ..++++|++|.+.....+. .++..+.++||||+........ .....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4689999999999999999999986 3588999999998766665 5578899999999754321111 11112
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
++.....+|.+++++|......... .. ++..
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~--------------------------------------------~~~~--- 139 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELD--RR--------------------------------------------MIEW--- 139 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH--HH--------------------------------------------HHHH---
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHH--HH--------------------------------------------HHHH---
Confidence 2333344788999998764322111 00 1111
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH--------HHhc--------CCCeEEEeccccccH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--------KLAR--------QPNSVVISCNLKLNL 276 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~--------~l~~--------~~~~v~iSa~~~~~i 276 (317)
+. ....|+++|+||+|+....... .+.. ...++++||+++.|+
T Consensus 140 -------------------l~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 140 -------------------FA--PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp -------------------HG--GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred -------------------HH--hcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 11 0247999999999998754321 1222 235788999999999
Q ss_pred HHHHHHHHHHhCe
Q 021103 277 DRLLARMWEEMGL 289 (317)
Q Consensus 277 ~~l~~~i~~~l~~ 289 (317)
++|.+.|.+.+..
T Consensus 199 ~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 199 DDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCc
Confidence 9999999998764
No 88
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=3.3e-17 Score=155.97 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~ 140 (317)
.+|+|+|+||+|||||+|.|+|.... ++++||+|++...+.+.++|..+.++||||+......- ..+..+....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 47999999999999999999998754 88999999999999999999999999999985321110 01223344466789
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|++++++|+....... ..+.+.|
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l-------------------------------------------------------- 107 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKIL-------------------------------------------------------- 107 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHH--------------------------------------------------------
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHH--------------------------------------------------------
Confidence 9999999986532211 1111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. +..+|+++|+||+|+.... ....+. ....++++||.+|.|+++|.+.+.+.+.
T Consensus 108 -------------~--~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 108 -------------Y--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp -------------T--TCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred -------------H--HcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 1 1257999999999987532 111222 2346899999999999999999998875
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=147.94 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh---ccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS---KSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~---~~~ 140 (317)
.+||+||||||||||+|+|+|...+ .+|.+.++|.++.. +. .....++..|..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-----------~~G~i~~~g~~i~~--~~-----~~~~i~~v~q~~~~~~~ltv~ 65 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-----------RKASSWNREEKIPK--TV-----EIKAIGHVIEEGGVKMKLTVI 65 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------------CCC--CC-----SCCEEEESCC----CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccccCCcccCc--ce-----eeeeeEEEeecCCCcCCceEE
Confidence 6899999999999999999999987 78888887765410 00 111122222222111 112
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE------eeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS------FNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia------lilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
|.+.+...... ....+.+.+++.. -..+..+.+||+||+||+.+| +++|||+.+||+.. .++++.+..
T Consensus 66 d~~~~g~~~~~-~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 66 DTPGFGDQINN-ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp CCCC--CCSBC-TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred echhhhhhccc-HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 22222111111 1111122222221 023445678999999999877 88999999999876 334443321
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
..++|+|+||+|....++..
T Consensus 140 -----------------------~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 140 -----------------------VVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp -----------------------TSEEEEEETTGGGSCHHHHH
T ss_pred -----------------------cCcEEEEEeccccCCHHHHH
Confidence 16789999999999876543
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=2.4e-17 Score=168.09 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHhc---c-cCcEE
Q 021103 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEV 217 (317)
Q Consensus 157 ~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l~---~-~~~~i 217 (317)
....+.|+.+|+ .+.+++.+|||||+||+.|| +++||||++||+.....+++.+. . ..|+|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 345678888998 46789999999999999887 89999999999998666655543 3 34999
Q ss_pred EecCCCChh
Q 021103 218 LFREDATVD 226 (317)
Q Consensus 218 ~~shd~~~~ 226 (317)
+++||.++.
T Consensus 863 vI~HdL~~i 871 (916)
T 3pih_A 863 VIEHNLDVI 871 (916)
T ss_dssp EECCCHHHH
T ss_pred EEeCCHHHH
Confidence 999996543
No 91
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=4.9e-16 Score=148.70 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--ch--hHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KG--RGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~--~~~~~~~~ 136 (317)
..+++++|.+|+|||||+|.|+|... .++++|+||++...+.+.++|..+.++||||+.+..... .. ........
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 56899999999999999999998864 489999999999999999999999999999986533211 11 11223345
Q ss_pred hccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 SKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
++.+|++++++|+....... ..+..++
T Consensus 275 ~~~ad~~llviD~~~~~~~~~~~~~~~~---------------------------------------------------- 302 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGIIEQDKRIAGYA---------------------------------------------------- 302 (456)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHH----------------------------------------------------
T ss_pred HhhCCEEEEEEeCCCCcCHHHHHHHHHH----------------------------------------------------
Confidence 67799999999986532211 1111110
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHH-HHh------cCCCeEEEeccccccHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVD-KLA------RQPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~-~l~------~~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ...+|+++|+||+|+.... +.. .+. .+.+++++||++|.|++++.+.+
T Consensus 303 -----------------~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 363 (456)
T 4dcu_A 303 -----------------H--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 363 (456)
T ss_dssp -----------------H--HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred -----------------H--HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHH
Confidence 0 0247999999999998532 111 121 24678999999999999999998
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 364 ~~~~ 367 (456)
T 4dcu_A 364 IKAS 367 (456)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 92
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.66 E-value=1.9e-15 Score=130.96 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=104.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-h-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-R-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~-~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.|++....+++++++|++...+.+.+++..+.++||||.......... . ..........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 3589999999999999999999987667789999999999988888999999999998542211110 0 1111223566
Q ss_pred CcEEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|.+++++|...... ...... .++..+
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~--------------------------------------------~~~~~l-------- 136 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQI--------------------------------------------NLFYSI-------- 136 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHH--------------------------------------------HHHHHH--------
T ss_pred ccEEEEEEecccccCcchHHHH--------------------------------------------HHHHHH--------
Confidence 789999998764321 100001 111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--------HHHHhc-C---CCeEEEeccccccHHHHHHHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--------VDKLAR-Q---PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--------~~~l~~-~---~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......|+++|+||+|+..... ...+.. . ...+.+||++|.|++++.+.|.+.
T Consensus 137 --------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 137 --------------KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp --------------HTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --------------HHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 11111479999999999975422 122222 2 357889999999999999999887
Q ss_pred hCee
Q 021103 287 MGLV 290 (317)
Q Consensus 287 l~~~ 290 (317)
+...
T Consensus 203 i~~~ 206 (228)
T 2qu8_A 203 LKND 206 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 93
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=3.2e-16 Score=149.16 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccC--Cchh--HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE--GKGR--GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~--~~~~--~~~~~~~~ 137 (317)
.+++|+|.+|+|||||+|.|+|.... ++++|+||++...+.+.++|..+.++||||+.+.... .... .......+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 58999999999999999999998764 8999999999999999999999999999998643321 1111 11223456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
+.+|++++++|+......... .++..
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~--~~~~~---------------------------------------------------- 281 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDK--RIAGY---------------------------------------------------- 281 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHH--HHHHH----------------------------------------------------
T ss_pred HhCCEEEEEEcCCcCCcHHHH--HHHHH----------------------------------------------------
Confidence 779999999998654321110 11100
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----H-HHHh------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----V-DKLA------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~-~~l~------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
+. ....|+++|+||+|+..... . +.+. .+.+.+++||++|.|++++.+.+.+
T Consensus 282 --------------~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 282 --------------AH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp --------------HH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred --------------HH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHH
Confidence 00 12479999999999985322 1 1111 2457899999999999999988876
Q ss_pred HhC
Q 021103 286 EMG 288 (317)
Q Consensus 286 ~l~ 288 (317)
.+.
T Consensus 346 ~~~ 348 (436)
T 2hjg_A 346 ASE 348 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=1.9e-16 Score=151.54 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~ 139 (317)
-.+|+|+|++|||||||+|.|+|.... +.++||+|++...+.+.+.+..+.++||||+........ ....+....++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 358999999999999999999998754 889999999999999999999999999999863211111 112234445678
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+.++|
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l------------------------------------------------------- 127 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKIL------------------------------------------------------- 127 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHH-------------------------------------------------------
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHH-------------------------------------------------------
Confidence 9999999997643221 11111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHH--hcCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ...+|+++|+||+|+..... .... ..+...+++||.+|.|+++|.+.+.+.+.
T Consensus 128 --------------~--~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 128 --------------Y--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --------------T--TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --------------H--HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 1 12579999999999875421 1111 22456789999999999999999988764
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.66 E-value=1.4e-17 Score=168.50 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEE
Q 021103 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEV 217 (317)
Q Consensus 157 ~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i 217 (317)
..+.++|+.+++ .+++++..|||||+||+.|| +++||||+|||+.....+++ .+... .++|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356788999999 35889999999999999888 79999999999988665544 44433 4999
Q ss_pred EecCCCChhhH
Q 021103 218 LFREDATVDDL 228 (317)
Q Consensus 218 ~~shd~~~~~~ 228 (317)
++|||.++...
T Consensus 788 visHdl~~i~~ 798 (842)
T 2vf7_A 788 AVEHKMQVVAA 798 (842)
T ss_dssp EECCCHHHHTT
T ss_pred EEcCCHHHHHh
Confidence 99999654443
No 96
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.65 E-value=2.8e-15 Score=123.96 Aligned_cols=150 Identities=22% Similarity=0.199 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.......+|++|.+.....+.+++..+.++||||....... ....+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM-------RARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS-------CCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH-------HHHHHhhCC
Confidence 5689999999999999999999987666778888888888889999999999999996432111 112346789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|........ . .+.+ ..
T Consensus 81 ~~i~v~d~~~~~~~~-~-~~~l--------------------------------------------~~------------ 102 (178)
T 2lkc_A 81 IVILVVAADDGVMPQ-T-VEAI--------------------------------------------NH------------ 102 (178)
T ss_dssp EEEEEEETTCCCCHH-H-HHHH--------------------------------------------HH------------
T ss_pred EEEEEEECCCCCcHH-H-HHHH--------------------------------------------HH------------
Confidence 999999865431110 0 0111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh--hhHH-HHhc-------C---CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD-KLAR-------Q---PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~~-~l~~-------~---~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+... +... .+.. + ...+.+||+++.|++++.+.|.+.+.
T Consensus 103 ----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 103 ----------AK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp ----------HG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------HH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 00 124799999999999853 2222 2211 1 25788999999999999999987654
No 97
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=2.1e-15 Score=132.76 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccc--cceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHH----
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVI---- 134 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p--~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~---- 134 (317)
..+|+|+|++|||||||+|+|+|.....+.++ ++|+.+..+.+.++|..+.++||||+.+..... ........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 45899999999999999999999887655544 489999999999999999999999986432211 11111222
Q ss_pred hhhccCcEEEEEecCCC
Q 021103 135 AVSKSSDIVLMVLDASK 151 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~ 151 (317)
...+.+|++++++++..
T Consensus 101 ~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHTTCCSEEEEEEETTB
T ss_pred hcCCCCCEEEEEEeCCC
Confidence 22378999999998753
No 98
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.65 E-value=1.1e-17 Score=157.11 Aligned_cols=101 Identities=22% Similarity=0.164 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE---------------EEecCCCccccccCCch
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI---------------QLLDLPGIIEGASEGKG 128 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i---------------~~~d~~g~~~~~~~~~~ 128 (317)
.+||+|+||||||||+|+|+|...+ .+|.+.++|.++ .+.|++|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p-----------~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~------- 132 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE-----------EEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS------- 132 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT-----------STTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG-------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-----------cCceEEECCeecceeEEeccccccCCeeehHhhcccc-------
Confidence 9999999999999999999999877 555555555432 2222222110
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCccccc--ceeeeeeE-----------------
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK--KKKTGGIS----------------- 188 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g--~~qr~~ia----------------- 188 (317)
....+.++|+.+++ ..+..+. ||+| |+||+.++
T Consensus 133 --------------------------~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 133 --------------------------TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp --------------------------SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred --------------------------hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 01235566777776 3333333 8888 88887765
Q ss_pred --eeecCCCCCCCHHHHHHHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE 209 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~ 209 (317)
+++||||++||+.....+++.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHH
Confidence 588999999998765555543
No 99
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.65 E-value=4e-15 Score=123.12 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++|+||...... .....++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-------ITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-------hHHHHhccC
Confidence 4799999999999999999998876667778888888888899988 5678899999532211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++..+ .
T Consensus 83 d~~i~v~d~~~~~s-~~~~~~~~~~~--------------------------------------------~--------- 108 (181)
T 3tw8_B 83 HGVIVVYDVTSAES-FVNVKRWLHEI--------------------------------------------N--------- 108 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H---------
Confidence 99999999875422 11222222111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+.... ....+. .....+.+||+++.|++++.+.|.+.+
T Consensus 109 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 109 -------------QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------HHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 011247999999999987432 222222 134788999999999999999998765
No 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.65 E-value=2.5e-15 Score=126.03 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=100.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC-CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch------hHHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG------RGRQVI 134 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~-~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~------~~~~~~ 134 (317)
..+++|+|++|||||||+|.|++.. ..+++.+++|.+..... . +.++.++||||+......... ......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V-NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E-TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E-CCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4589999999999999999999986 34778889988875432 2 457889999997432211100 011122
Q ss_pred hhhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhccc
Q 021103 135 AVSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~ 213 (317)
.....++++++++|........ ..+..++..
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------------------------------------------------ 131 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------------------------------------------------ 131 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------------------------------------------------
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------------------------------------------------
Confidence 2233458888888875432111 111111110
Q ss_pred CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------HHhc---CCCeEEEeccccccHHHHHHHH
Q 021103 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLAR---QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 214 ~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~l~~---~~~~v~iSa~~~~~i~~l~~~i 283 (317)
...|+++|+||+|+...+... .... ....+.+||+++.|++++.+.|
T Consensus 132 -----------------------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 132 -----------------------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp -----------------------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHH
T ss_pred -----------------------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 147999999999998654322 1222 2468999999999999999999
Q ss_pred HHHhC
Q 021103 284 WEEMG 288 (317)
Q Consensus 284 ~~~l~ 288 (317)
.+.+.
T Consensus 189 ~~~l~ 193 (195)
T 3pqc_A 189 STLLK 193 (195)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88764
No 101
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.64 E-value=4.2e-16 Score=147.13 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-.+++|+|.+|+|||||+|+|++... .++++++||.++....+.+.+. ++.++||||+.+....+..........+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 35899999999999999999999875 4789999999999999999876 899999999865433322333445566788
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+... .....+...+..
T Consensus 114 aD~vllVvD~~~~-~~~~~~l~~l~~------------------------------------------------------ 138 (423)
T 3qq5_A 114 ADCGILVTDSAPT-PYEDDVVNLFKE------------------------------------------------------ 138 (423)
T ss_dssp CSEEEEECSSSCC-HHHHHHHHHHHH------------------------------------------------------
T ss_pred CCEEEEEEeCCCh-HHHHHHHHHHHh------------------------------------------------------
Confidence 9999999987222 111111111110
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH---HHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~---~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
...|+++|+||+|+...... +.+.+ ...++.+||++|.|++++.+.|.+.+..
T Consensus 139 -----------------~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 139 -----------------MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp -----------------TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred -----------------cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 14799999999999865432 23322 2357889999999999999999998854
No 102
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.9e-19 Score=168.98 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=86.7
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeE-E-EEECCeeEEEecCCCccccccCCchhHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-I-IHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G-~-i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
+++.+..|++++|+||||||||||+++|+|...+ ..| . |.++|.. ....++.+|
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg~~-------------~~~i~~vpq 186 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINLDP-------------QQPIFTVPG 186 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEECCT-------------TSCSSSCSS
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcCCc-------------cCCeeeecc
Confidence 4445556899999999999999999999999887 788 7 8886621 011111111
Q ss_pred HHhh------hccCcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---------------ee
Q 021103 133 VIAV------SKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------------FN 190 (317)
Q Consensus 133 ~~~~------~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia---------------li 190 (317)
.... +...+.+ +.............+.++++.+|+ .... +.+||+||+||+++| ++
T Consensus 187 ~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 187 CISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp CCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred chhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 1100 0111111 111100000001123344566666 2222 889999999999775 88
Q ss_pred ecC-CCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC
Q 021103 191 STL-PLTHVDEKLCYQILHEYKI-HNAEVLFREDAT 224 (317)
Q Consensus 191 lDE-Pt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~ 224 (317)
+|| ||++||+. ...+.+.+.. ..++++++|+..
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred EeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 999 99999987 3333333333 338999999966
No 103
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=3.2e-15 Score=125.76 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh----HHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR----GRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~----~~~~ 133 (317)
..+++|+|++|||||||+|.|++.. ..+++.+++|++..... + +..+.++||||+....... ... ....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 4689999999999999999999875 34678889998875443 3 3478999999975422110 000 1111
Q ss_pred HhhhccCcEEEEEecCCCchhhHH-HHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQ-ILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~-~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
......+|.+++++|......... .+..++.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~------------------------------------------------ 131 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLK------------------------------------------------ 131 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------------------------------------------------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH------------------------------------------------
Confidence 112223488899988764322111 1111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh----c--CCCeEEEeccccccHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA----R--QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~----~--~~~~v~iSa~~~~~i~~l~~~ 282 (317)
....|+++|+||+|+....... .+. . ....+.+||+++.|++++.+.
T Consensus 132 -----------------------~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 188 (195)
T 1svi_A 132 -----------------------YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188 (195)
T ss_dssp -----------------------HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHH
T ss_pred -----------------------HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHH
Confidence 0147999999999998754332 221 1 235788999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.+.
T Consensus 189 l~~~l~ 194 (195)
T 1svi_A 189 IKKMIN 194 (195)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 987664
No 104
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.64 E-value=1.5e-16 Score=150.23 Aligned_cols=51 Identities=2% Similarity=-0.152 Sum_probs=41.4
Q ss_pred ccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 177 IYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 177 LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
|||||+||+.|| |++||||++||+.....+++.+. ...++|++||+..+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 699999999887 78999999999998766665554 3359999999965544
No 105
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.63 E-value=4.6e-18 Score=141.49 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=41.6
Q ss_pred cCCcccccceeeeeeE---------eeecCCCCCCCHH----------------HHHHHHHHh---cccC-cEEEecCCC
Q 021103 173 RPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----------------LCYQILHEY---KIHN-AEVLFREDA 223 (317)
Q Consensus 173 ~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~----------------~~~~~l~~l---~~~~-~~i~~shd~ 223 (317)
.....|+|++||+.+| +++||||++||+. ....+.+.+ ...+ ++|++|||.
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 3455699999999988 8999999999998 435555544 3334 999999996
Q ss_pred Chhh
Q 021103 224 TVDD 227 (317)
Q Consensus 224 ~~~~ 227 (317)
+..+
T Consensus 160 ~~~~ 163 (171)
T 4gp7_A 160 EEVE 163 (171)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 106
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=4.7e-15 Score=129.55 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccc--cceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH----HHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ----VIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p--~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~----~~~ 135 (317)
..+|+|+|++|||||||+|+|+|.....+.+| ++|.++..+.+.++|..+.++||||+............. ...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999988777777 889999999999999999999999987643322111111 122
Q ss_pred hhccCcEEEEEecCCC
Q 021103 136 VSKSSDIVLMVLDASK 151 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~ 151 (317)
..+.+++++++++...
T Consensus 109 ~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR 124 (239)
T ss_dssp TTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEeeCCC
Confidence 3346799999998653
No 107
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=1.1e-14 Score=122.61 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ ..|..+..+.+.++|..+.++||||...... .....++.+|.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------SGGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 48999999999999999999976532 22 2456667889999999999999999643211 11223568999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ ++
T Consensus 94 ~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 118 (190)
T 1m2o_B 94 IVFLVDAADPERF-DEARVELDAL----------------------------------------FN-------------- 118 (190)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEECCChHHH-HHHHHHHHHH----------------------------------------Hc--------------
Confidence 9999998754321 1111111110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC--------------CCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--------------PNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~--------------~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. ......|+++|.||+|+... +++....+. ...+.+||+++.|++++.+.|.+
T Consensus 119 --------~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 119 --------I--AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp --------C--GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred --------c--hhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 00124799999999999752 333322211 13688999999999999998875
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 189 ~ 189 (190)
T 1m2o_B 189 Y 189 (190)
T ss_dssp T
T ss_pred h
Confidence 4
No 108
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.63 E-value=1.9e-14 Score=120.99 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 47999999999999999999988766677788888888888889884 57889999953211 1123345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ ..
T Consensus 90 d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~----------- 116 (196)
T 3tkl_A 90 HGIIVVYDVTDQES-FNNVKQWLQEI-----------------------------------------DR----------- 116 (196)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHH-----------------------------------------HH-----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999999875322 11111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .....|+++|+||+|+.... ....+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 117 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 117 -----------Y--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp -----------H--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 01247999999999997542 2222222 346899999999999999999987764
No 109
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.62 E-value=6.2e-15 Score=130.37 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCcccc-ceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~-tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~ 135 (317)
..+|+|+|++|||||||+|.|+|.... .+..|. +|++...+.+.++|..+.++||||+.+........ ......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999998744 444555 89999999999999999999999987543221111 112223
Q ss_pred hhccCcEEEEEecCCC
Q 021103 136 VSKSSDIVLMVLDASK 151 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~ 151 (317)
.++.+|.+++++++..
T Consensus 102 ~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC
Confidence 5577999999998764
No 110
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=4.2e-17 Score=139.93 Aligned_cols=129 Identities=15% Similarity=0.017 Sum_probs=70.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..|++++|+||||||||||+++|+|. .| .+|.|.. ..+.. +... .....++.+|..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----------~~G~I~~--~~~~~-~~~~----~~~~ig~v~q~~----- 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-----------QSKQVSR--IILTR-PAVE----AGEKLGFLPGTL----- 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HH-----------HTTSCSE--EEEEE-CSCC----TTCCCCSSCC-------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CC-----------cCCeeee--EEecC-Cchh----hhcceEEecCCH-----
Confidence 34889999999999999999999999 77 5565521 11211 1000 111122222211
Q ss_pred CcEE-EEE---ecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH
Q 021103 140 SDIV-LMV---LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 140 ~d~i-~~v---~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~ 206 (317)
.+++ .+. .+..........+.++++. ++ ||+||+++| +++||||++ ....+.++
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~ 142 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMF 142 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHH
Confidence 1111 000 0000000011234444443 32 999999998 999999999 55556677
Q ss_pred HHHhcccC-cEEEecCCCChhh
Q 021103 207 LHEYKIHN-AEVLFREDATVDD 227 (317)
Q Consensus 207 l~~l~~~~-~~i~~shd~~~~~ 227 (317)
+..+ ..+ ++| +|||....+
T Consensus 143 l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTB-CTTCEEE-EEEC-----
T ss_pred HHHh-cCCCEEE-EECCHHHHh
Confidence 7766 334 777 999966443
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.61 E-value=3.5e-16 Score=159.37 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=55.4
Q ss_pred HHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHh---cc-cCcEEEe
Q 021103 159 LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLF 219 (317)
Q Consensus 159 ~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l---~~-~~~~i~~ 219 (317)
..+.|+.+++ .+++++..|||||+||+.|| +++||||++||+.....+++.+ .. ..++|++
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 922 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4577888988 35789999999999999888 7999999999999866655544 33 3499999
Q ss_pred cCCCChhh
Q 021103 220 REDATVDD 227 (317)
Q Consensus 220 shd~~~~~ 227 (317)
|||.++..
T Consensus 923 sHdl~~i~ 930 (993)
T 2ygr_A 923 EHNLDVIK 930 (993)
T ss_dssp CCCHHHHT
T ss_pred cCCHHHHH
Confidence 99965433
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.61 E-value=1.8e-16 Score=160.93 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~ 218 (317)
...+.|+.+++ .+++++.+|||||+||+.|| +++||||+|||+.....+++.+ ... .++|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34578889998 46789999999999999888 7999999999999866655544 333 49999
Q ss_pred ecCCCChh
Q 021103 219 FREDATVD 226 (317)
Q Consensus 219 ~shd~~~~ 226 (317)
+|||.+..
T Consensus 904 isHdl~~i 911 (972)
T 2r6f_A 904 IEHNLDVI 911 (972)
T ss_dssp ECCCHHHH
T ss_pred EcCCHHHH
Confidence 99996543
No 113
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.61 E-value=8.1e-15 Score=123.04 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=102.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|||||||+|.+++....... ...|.......+.+++..+.++||||..... ......+..+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCC
Confidence 468999999999999999999987632222 2356667778888889999999999953321 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++.. ++..
T Consensus 93 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 119 (190)
T 2h57_A 93 AIIFVIDSSDRLRM-VVAKEELDT----------------------------------------LLNH------------ 119 (190)
T ss_dssp EEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHS------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC------------
Confidence 99999998654211 111111111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh---c----CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA---R----QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~---~----~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
........|+++|+||+|+... +++.... . ....+.+||+++.|++++.+.|.+.+..+
T Consensus 120 ----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 120 ----------PDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp ----------TTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred ----------hhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 0000025799999999999754 2232222 1 12478899999999999999998877543
No 114
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.61 E-value=2.8e-14 Score=116.30 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|+|||||+|.+++.... ...| |.......+.+++..+.++||||.... .......++.+|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHhccCCEE
Confidence 6899999999999999999876532 2223 455556677778889999999996431 11222346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|...+..- ..+..++..+ +..
T Consensus 72 i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~-------------- 96 (164)
T 1r8s_A 72 IFVVDSNDRERV-NEAREELMRM----------------------------------------LAE-------------- 96 (164)
T ss_dssp EEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTC--------------
T ss_pred EEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hhc--------------
Confidence 999998754321 1122221110 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|.||+|+.... ++..... ....+.+||+++.|++++.+.|.+.+.
T Consensus 97 ----------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 97 ----------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp ----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ----------hhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 001247999999999997642 2221111 113788999999999999999988764
No 115
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.60 E-value=3e-14 Score=118.91 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=100.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++++|++|||||||+|.+++.. . ..+. .|.......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-V-DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-C-SSCC-CCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C-Cccc-ccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 4689999999999999999999876 2 2222 24445566788889999999999963311 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+..- ..+..++..+ +.
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 113 (186)
T 1ksh_A 88 GLIWVVDSADRQRM-QDCQRELQSL----------------------------------------LV------------- 113 (186)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998754321 1121111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---hc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---AR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l---~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+......+.+ .. ....+.+||+++.|++++.+.|.+.+.
T Consensus 114 ---------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 114 ---------EE--RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ---------CG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------Ch--hcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00 0124799999999999754322211 11 124788999999999999999988764
No 116
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.59 E-value=2.1e-14 Score=118.49 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|.++.+.....+.+++. .+.++||||..... ......+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 47999999999999999999987655555677777887888888885 67889999953211 1122345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 88 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 113 (179)
T 2y8e_A 88 TVAVVVYDITNTNS-FHQTSKWIDD--------------------------------------------VR--------- 113 (179)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865321 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... +..... .....+.+||+++.|++++.+.|.+.+..
T Consensus 114 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 114 ---------TE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp ---------HH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 00 01247999999999997432 222221 12457889999999999999999887643
No 117
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.59 E-value=3.7e-14 Score=118.21 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.|++.. ...+++.||.+.....+.+++.. +.++||||...... .....+..+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhcC
Confidence 479999999999999999999765 35678888888888888888876 56799999533111 112335668
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ ..
T Consensus 77 ~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------ 103 (189)
T 4dsu_A 77 EGFLCVFAINNTKS-FEDIHHYREQI----------------------------------------KR------------ 103 (189)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH----------------------------------------HH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH------------
Confidence 99999998765422 11121111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+.... ....+.. ....+.+||++|.|++++.+.|.+.+.
T Consensus 104 ----------~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 104 ----------VK--DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ----------HT--TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01257999999999997432 2232322 246889999999999999999987764
No 118
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.59 E-value=1.4e-14 Score=122.78 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ ..|..+..+.+.++|..+.++||||...... .....++.+|.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCE
Confidence 47999999999999999999976532 22 2355556788999999999999999533211 11224567999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ ++
T Consensus 96 ~i~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 120 (198)
T 1f6b_A 96 IVFLVDCADHERL-LESKEELDSL----------------------------------------MT-------------- 120 (198)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh--------------
Confidence 9999998754321 1122221110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCC---hhhHHHHhc-------------------CCCeEEEeccccccHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLAR-------------------QPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~---~~~~~~l~~-------------------~~~~v~iSa~~~~~i~~l~ 280 (317)
. ......|+++|.||+|+.. .+++..... ....+.+||++|.|++++.
T Consensus 121 --------~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 121 --------D--ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp --------C--GGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred --------C--cccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 0 0012479999999999974 233332221 1237889999999999999
Q ss_pred HHHHHHh
Q 021103 281 ARMWEEM 287 (317)
Q Consensus 281 ~~i~~~l 287 (317)
+.|.+.+
T Consensus 191 ~~l~~~l 197 (198)
T 1f6b_A 191 RWMAQYI 197 (198)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 9987654
No 119
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.59 E-value=6.2e-14 Score=115.72 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||.... .......++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHHhcC
Confidence 47999999999999999999987655455566666666778888885 6788999995321 11223456779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ .....
T Consensus 81 ~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~--------- 110 (177)
T 1wms_A 81 DCCLLTFSVDDSQS-FQNLSNWKKEF----------------------------------------IYYAD--------- 110 (177)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHH----------------------------------------HHHHT---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH----------------------------------------HHHcc---------
Confidence 99999998765432 11112111110 00000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 111 ------------~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 111 ------------VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp ------------CSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------ccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124799999999999632 23333322 34689999999999999999997765
No 120
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.59 E-value=4.4e-14 Score=116.81 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++.. ...+++.||.+.....+.+++. .+.++|+||...... .....+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhhC
Confidence 479999999999999999999874 3567888888877777888875 577899999543211 112234678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... ..+..++.. ++..
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~----------- 109 (181)
T 2fn4_A 82 HGFLLVFAINDRQSF-NEVGKLFTQ----------------------------------------ILRV----------- 109 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999987653221 112111111 1110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 110 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 110 -----------K--DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----------H--TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0 01247999999999997532 2222222 235788999999999999999987764
No 121
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.59 E-value=3.5e-14 Score=116.21 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||+|.+++........|.++.+.....+.++|. .+.++|+||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-------ITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-------CCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-------hHHHHhccC
Confidence 47999999999999999999987755555666777776777777764 577889999533211 122345778
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 102 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIKQWFKT--------------------------------------------VN--------- 102 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... +....+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 103 ---------E-H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999532 22222221 24689999999999999999998765
No 122
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.59 E-value=4.6e-14 Score=117.75 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
..+++++|++|||||||++.+++.... +.+.++ .....+.+++..+.++||||..... ......+..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 84 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 458999999999999999999987422 122222 2334677888999999999953211 1223346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|......- ..+..++..+ + .
T Consensus 85 ~~~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~---~--------- 111 (181)
T 1fzq_A 85 DILIYVIDSADRKRF-EETGQELTEL----------------------------------------L---E--------- 111 (181)
T ss_dssp SEEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------T---T---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------H---h---------
Confidence 999999998654321 1122121110 0 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHHHhc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+..... +..... ....+.+||++|.|++++.+.|.+.+.
T Consensus 112 ----------~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 112 ----------EE--KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp ----------CG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred ----------Ch--hhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 012479999999999975422 221111 124688999999999999999987653
No 123
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.59 E-value=2.5e-14 Score=116.83 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.|++........|.++.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhcCC
Confidence 47999999999999999999987644333444555666677777765 578899999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i---------- 103 (168)
T 1z2a_A 79 QACVLVFSTTDRESF-EAISSWREK--------------------------------------------V---------- 103 (168)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH--------------------------------------------H----------
Confidence 999999987653211 111111111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 104 --------~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 104 --------VAE----VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp --------HHH----HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --------HHh----CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 024799999999998753 22233322 24678999999999999999997754
No 124
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.58 E-value=3.1e-14 Score=120.43 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|+|||||++.+++.. ...+++.||.+.....+.+++.. +.++||||....... ....+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------RPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------GGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------hHhhcCC
Confidence 4689999999999999999999865 44677888888877888888864 569999997432111 1124577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|.............++.. +
T Consensus 92 ~~~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------~--------- 118 (201)
T 2q3h_A 92 TDIFLLCFSVVSPSSFQNVSEKWVPE--------------------------------------------I--------- 118 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------H---------
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHH--------------------------------------------H---------
Confidence 99999999986543211110011111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----------------hHHHHh---cCCCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLA---RQPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----------------~~~~l~---~~~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+.... +...+. .....+.+||+++.|++++
T Consensus 119 -------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 119 -------------RCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185 (201)
T ss_dssp -------------HHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred -------------HHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence 0001147999999999997421 122222 1236788999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 186 ~~~l~~~~ 193 (201)
T 2q3h_A 186 FDAAIVAG 193 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
No 125
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.58 E-value=4.7e-14 Score=114.92 Aligned_cols=152 Identities=23% Similarity=0.232 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++... ...++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 4799999999999999999998653 456677777777777788775 57899999953211 1222345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 103 (168)
T 1u8z_A 77 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 103 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765422 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 104 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 104 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ----------HHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999998743 22222221 23578899999999999999987754
No 126
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=1.9e-14 Score=119.59 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.... ....|.......+.+++..+.++|+||...... .....+..+|
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 87 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-------YWRCYYADTA 87 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CCT-------TGGGTTTTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 358999999999999999999864431 112233344567788889999999999743211 1223456799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- +.+..++..+ ..
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~~--------------------------------------------~~--------- 113 (183)
T 1moz_A 88 AVIFVVDSTDKDRM-STASKELHLM--------------------------------------------LQ--------- 113 (183)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHHH--------------------------------------------TT---------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH--------------------------------------------Hc---------
Confidence 99999997654221 1122222111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-------CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-------~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+... +++...... ...+.+||+++.|++++.+.|.+.+
T Consensus 114 ---------~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 114 ---------E--EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ---------S--STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ---------C--hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 00125799999999999754 223222111 1478899999999999999998765
No 127
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=6.5e-14 Score=114.46 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+++|++|||||||+|.+.+........|..+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 47999999999999999999987654334455555555566777765 67889999953211 1223346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +.
T Consensus 77 d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~--------- 102 (170)
T 1ek0_A 77 QAALVVYDVTKPQSF-IKARHWVKE--------------------------------------------LH--------- 102 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH--------------------------------------------HH---------
T ss_pred cEEEEEEecCChHHH-HHHHHHHHH--------------------------------------------HH---------
Confidence 999999998654221 112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh--------hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--------~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 103 ---------EQ---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ---------HH---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ---------Hh---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124789999999998743 11222221 23578899999999999999998765
No 128
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=5e-14 Score=120.05 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|+|||||+|.|++........|.++.+.....+.++| ..+.++||||...... .....+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT-------ITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC-------CCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcc
Confidence 46899999999999999999998776556667777777778888888 4688999999543211 12234578
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++.. +.
T Consensus 93 ~d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 119 (213)
T 3cph_A 93 AMGIILVYDVTDERT-FTNIKQWFKT--------------------------------------------VN-------- 119 (213)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999765421 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 120 ----------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 120 ----------E-H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp ----------H-H--TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ----------H-h--cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0124799999999999532 22233322 246899999999999999999987653
No 129
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.58 E-value=6.4e-14 Score=114.85 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|+|||||+|.+.+.... .. ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 458999999999999999999875532 11 224455566788889999999999964311 11223456899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 77 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 102 (171)
T 1upt_A 77 AVIYVVDSCDRDRI-GISKSELVAM----------------------------------------LE------------- 102 (171)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654221 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHH-Hh-c-----CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDK-LA-R-----QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~-l~-~-----~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+.... ++.. +. . ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 103 ---------E--EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp ---------C--GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------c--hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 0 001247999999999998642 2221 11 1 11478899999999999999998765
No 130
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.58 E-value=2.4e-14 Score=119.22 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|.+|+|||||+|.+++.... ....|.......+.+++..+.++|+||...... .....++.+|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETTEEEEEEEESSSGGGTC-------GGGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 458999999999999999999986541 112233334457778899999999999743211 1223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 91 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 116 (181)
T 2h17_A 91 FVIVVVDSTDRERI-SVTREELYKM----------------------------------------LA------------- 116 (181)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654221 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. .....|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.
T Consensus 117 ---------~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 117 ---------HE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ---------CG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ---------Ch--hhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 00 0124799999999999753 2232211 11 147889999999999999988653
No 131
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=5.5e-14 Score=116.67 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++.. ....++.|+.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-------FPQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-------CCGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHHHhcC
Confidence 489999999999999999999654 3466777777777778888885 457999999643211 111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. ++..
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 106 (181)
T 3t5g_A 79 NGYILVYSVTSIKS-FEVIKVIHGK----------------------------------------LLDM----------- 106 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 99999998865322 1112211111 1110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.+.+.+..
T Consensus 107 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 107 -----------V--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp -----------C------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred -----------c--CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0 0124799999999998643 22333322 2357889999999999999999887644
No 132
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.58 E-value=7.2e-14 Score=118.70 Aligned_cols=152 Identities=17% Similarity=0.126 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhccCC
Confidence 47999999999999999999987765555677777777778888875 678999999543211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 82 d~vilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (206)
T 2bcg_Y 82 HGIIIVYDVTDQES-FNGVKMWLQE--------------------------------------------ID--------- 107 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 108 ----------RYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp ----------HHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 1247899999999997532 2222322 24688999999999999999997765
No 133
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.58 E-value=5.4e-14 Score=117.93 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|++|+|||||+|.+++....... ..|.......+...+..+.++|+||..... ......+..+|
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVS 92 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHccCC
Confidence 358999999999999999999976543111 223334445677788899999999953211 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|....... ..+..++..+ +.
T Consensus 93 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 118 (188)
T 1zd9_A 93 AIVYMVDAADQEKI-EASKNELHNL----------------------------------------LD------------- 118 (188)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654321 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHH-HHh----c--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVD-KLA----R--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~-~l~----~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... ++. .+. . ....+.+||+++.|++++.+.|.+.+..
T Consensus 119 ---------~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 119 ---------KP--QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp ---------CG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred ---------Cc--ccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 01247999999999997532 221 111 0 1246889999999999999999887643
No 134
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.58 E-value=7e-14 Score=118.37 Aligned_cols=153 Identities=22% Similarity=0.215 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++.. ...+++.|+.+.....+.+++. .+.++|+||..... ......+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhhC
Confidence 479999999999999999999765 3467788888877788888875 67899999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 113 (206)
T 2bov_A 87 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 113 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765421 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+.... +...+.+ ....+.+||++|.|++++.+.|.+.+.
T Consensus 114 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 114 ----------VK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ----------HT--TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222221 235788999999999999999987663
No 135
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.58 E-value=5.5e-14 Score=116.14 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+++++|++|||||||+|.+++...+....|.++.+.....+.+++ ..+.++|+||..... ......++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-------KMLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-------TTHHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-------chhhHHHhh
Confidence 4799999999999999999998764422234445667777888877 678999999953211 112234578
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++..+ ..
T Consensus 80 ~d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~---------- 107 (178)
T 2hxs_A 80 AQGVLLVYDITNYQS-FENLEDWYTVV-----------------------------------------KK---------- 107 (178)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHHH-----------------------------------------HH----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------HH----------
Confidence 999999999865432 11111111110 00
Q ss_pred cCCCChhhHHHHHhcccceee-eeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMK-CVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p-~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. . .....| +++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 108 --------~~---~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 108 --------VS---E-ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp --------HH---H-HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred --------Hh---c-ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 0 001234 7899999999642 22333322 235788999999999999999988764
No 136
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.58 E-value=5.4e-14 Score=118.55 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.... .. ..|.......+.+++..+.++||||...... .....++.+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 468999999999999999999865432 22 2355556677888889999999999643111 1223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 99 ~iilv~D~~~~~s~-~~~~~~l~~~----------------------------------------~~------------- 124 (192)
T 2b6h_A 99 GLIFVVDSNDRERV-QESADELQKM----------------------------------------LQ------------- 124 (192)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------hc-------------
Confidence 99999998754321 1122222110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+.... ++..... ....+.+||+++.|++++.+.|.+.+
T Consensus 125 ---------~--~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 125 ---------E--DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp ---------C--GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred ---------c--cccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0 001247999999999997642 2221111 11378899999999999999998765
No 137
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=7.6e-14 Score=116.74 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+|+++|++|||||||+|.+++.... . ...|.......+.+++..+.++||||...... .....++.+|.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--H-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--E-EECCSCSSCEEEEETTEEEEEEECCC----CG-------GGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-CcCCCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcCCCE
Confidence 58999999999999999999965433 1 12344455677888999999999999743211 11234578999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ +.
T Consensus 87 ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 111 (187)
T 1zj6_A 87 VIVVVDSTDRERI-SVTREELYKM----------------------------------------LA-------------- 111 (187)
T ss_dssp EEEEEETTCTTTH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEeCCCHHHH-HHHHHHHHHH----------------------------------------Hh--------------
Confidence 9999998654221 1111111110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.+..
T Consensus 112 --------~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 112 --------HE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp --------SG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred --------ch--hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 00 0124799999999999753 2332211 11 246889999999999999999987753
No 138
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.58 E-value=6.1e-14 Score=116.82 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||.... .......+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHHhcC
Confidence 4799999999999999999998776555566777777777888887 46789999995321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 84 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 109 (186)
T 2bme_A 84 AGALLVYDITSRET-YNALTNWLTD--------------------------------------------AR--------- 109 (186)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 110 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 110 ----------ML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999996431 2222222 23578899999999999999987765
No 139
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.58 E-value=5.1e-14 Score=118.59 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|||||||++.+++......+|.. |.......+...+..+.++||||..... ......++.+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCC
Confidence 458999999999999999999987654312222 3334445667788899999999964321 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +....
T Consensus 89 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~~~~---------- 117 (199)
T 4bas_A 89 AVIFVVDSSDHLRL-CVVKSEIQAM----------------------------------------LKHED---------- 117 (199)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTSHH----------
T ss_pred EEEEEEECCcHHHH-HHHHHHHHHH----------------------------------------HhChh----------
Confidence 99999998764321 1122222110 00000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHH-Hh-----c--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDK-LA-----R--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~-l~-----~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...........|+++|+||+|+... +++.. +. + ....+.+||+++.|++++.+.|.+.+.
T Consensus 118 -------~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 118 -------IRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp -------HHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred -------hhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 0000000015799999999999865 22221 11 1 124688999999999999999988764
No 140
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.58 E-value=4.4e-14 Score=118.88 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++... ...+..|+.+.....+.+++..+ .++||||..... ......++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCC
Confidence 5899999999999999999998764 34566666666666777877654 889999943211 1122345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +.
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~-----------------------------------------~~------------ 122 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPE-----------------------------------------IK------------ 122 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH-----------------------------------------HH------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHH-----------------------------------------HH------------
Confidence 9999999987542211110111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-------hhHHHHh---cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-------DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-------~~~~~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+... ++...+. .....+.+||+++.|++++.+.|.+.+
T Consensus 123 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 123 -------------HYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -------------HHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00124799999999999742 2222222 234488999999999999999998876
No 141
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=4.2e-14 Score=115.82 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++........+.+|.+.....+.+++.. +.++|+||....... .....++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 379999999999999999999877655556667788888888888854 568899986432110 011224568
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|...... ...+..++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~------------ 103 (169)
T 3q85_A 77 DAFLIVFSVTDRRS-FSKVPETLLR----------------------------------------LRA------------ 103 (169)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCChHH-HHHHHHHHHH----------------------------------------HHh------------
Confidence 99999998765321 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.+.+.+.
T Consensus 104 ----------~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 104 ----------GR--PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp ----------HS--TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----------cc--cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 00 0125799999999998732 22222222 235788999999999999999987653
No 142
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.57 E-value=5.8e-14 Score=114.25 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++.... ..++.|+.+.....+.+++.. +.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 47999999999999999999976533 345556555556677777765 7889999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +++.
T Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 103 (167)
T 1kao_A 76 QGFILVYSLVNQQSF-QDIKPMRDQ----------------------------------------IIRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999987654221 111111111 1100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+.... +...+.. ..+.+.+||+++.|++++.+.|.+.+
T Consensus 104 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 104 -----------K--RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -----------T--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 0 01247999999999986432 2222221 24688999999999999999998765
No 143
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.57 E-value=2.1e-14 Score=119.47 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||++.+++........|.++.+.....+.++| ..+.++|+||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 4799999999999999999997765555667777777777888888 5678999999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..++.. +.
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRNWIRN--------------------------------------------IE--------- 107 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1122222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ---------~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 108 ---------EH---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ---------HH---SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999742 22333322 23578899999999999999997765
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.57 E-value=3.7e-14 Score=136.97 Aligned_cols=154 Identities=15% Similarity=0.132 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++|+|.+|+|||||+|.|++... +. .+.|++...+.+.+.+..+.++||+|...... .....++.+|
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ad 391 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP-------LWRHYYTGTQ 391 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSG-------GGGGGGTTCC
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCEEEEEEECCCcHHHHH-------HHHHHhccCC
Confidence 35899999999999999999998763 23 34588888899999999999999999533211 1233467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|....... ..+..++.. ++..
T Consensus 392 ~~i~V~D~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 418 (497)
T 3lvq_E 392 GLIFVVDCADRDRI-DEARQELHR----------------------------------------IIND------------ 418 (497)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHH----------------------------------------HHTS------------
T ss_pred EEEEEEECcchhHH-HHHHHHHHH----------------------------------------Hhhh------------
Confidence 99999998764321 111111111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-------CCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-------~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
......|+++|+||+|+... +++...... ..++.+||++|.|++++.+.|.+.+...
T Consensus 419 ------------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 419 ------------REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp ------------GGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred ------------hhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 00124799999999999754 222221111 1378899999999999999999987643
No 145
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.57 E-value=8.9e-14 Score=113.39 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++... ...++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 4799999999999999999998543 344555555555555666554 57889999954321 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 76 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 102 (167)
T 1c1y_A 76 QGFALVYSITAQST-FNDLQDLREQ----------------------------------------ILR------------ 102 (167)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765421 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 103 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 103 ----------VK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp ----------HH--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------hh--CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 0125799999999999643 22333322 34578899999999999999998765
No 146
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.57 E-value=1.4e-13 Score=114.04 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||+|.+++........+..+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 47999999999999999999987654333344444444556667654 67899999953211 1122345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 111 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKKWVQE--------------------------------------------LQ--------- 111 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765422 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+..
T Consensus 112 ---------~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 112 ---------AQ---GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0124789999999999643 22333322 2357889999999999999999887653
No 147
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1e-13 Score=114.77 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+++|++|+|||||+|.+++.... ....|.++.+.....+.+++. .+.++|+||..... ......+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 47999999999999999999987654 344566666666667778775 67889999953211 112234577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. +.
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 110 (180)
T 2g6b_A 84 AHALLLLYDVTNKAS-FDNIQAWLTE--------------------------------------------IH-------- 110 (180)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865422 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
... ....|+++|+||+|+.... +...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 111 -----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 111 -----------EYA--QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp -----------HHS--CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------HhC--CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 1247999999999997532 2222221 246889999999999999999988764
No 148
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.57 E-value=3e-14 Score=121.28 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|||||||++.+++... ...++.|+.+.....+.+++..+. ++||||..... ......++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 46899999999999999999996543 456777777777777788776654 89999963311 112234578
Q ss_pred CcEEEEEecCCCc
Q 021103 140 SDIVLMVLDASKS 152 (317)
Q Consensus 140 ~d~i~~v~~~~~~ 152 (317)
+|.+++++|....
T Consensus 102 ~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 102 TDVFLICFSLVSP 114 (204)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998754
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.57 E-value=6.3e-14 Score=118.54 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|||||||+|.++|.......+|.+|.+...+.+.+++.. +.++|++|..... .. .....++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~--~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GW--LRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HH--HHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hh--hHHHhhccC
Confidence 589999999999999999999876655677888888888888998875 4567999863211 00 111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|...... ...+..++.. +.
T Consensus 98 d~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 123 (195)
T 3cbq_A 98 DAFLIVFSVTDRRS-FSKVPETLLR--------------------------------------------LR--------- 123 (195)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998765321 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. . .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 124 ---------~~-~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 124 ---------AG-R-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp ---------HH-S-TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------Hh-c-CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 00 0 0125799999999999743 22333322 235788999999999999999987663
No 150
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.57 E-value=1.1e-13 Score=116.51 Aligned_cols=151 Identities=23% Similarity=0.207 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---------------------------------
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--------------------------------- 108 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--------------------------------- 108 (317)
..+|+|+|++|||||||+|.|++...+....|.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 45799999999999999999998764433333333444445555555
Q ss_pred ------eeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccce
Q 021103 109 ------TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182 (317)
Q Consensus 109 ------~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~ 182 (317)
..+.++||||..... ......++.+|.+++++|...+... ..+..++..
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~~~~~~----------------- 141 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQ----------------- 141 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHH-----------------
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHH-HHHHHHHHH-----------------
Confidence 678899999953211 1123345789999999998654221 111111111
Q ss_pred eeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC----hhhHHH
Q 021103 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 258 (317)
Q Consensus 183 qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~----~~~~~~ 258 (317)
+. .. ...|+++|+||+|... .++...
T Consensus 142 ---------------------------i~----------------------~~-~~~piilv~NK~D~~~~~~~~~~~~~ 171 (208)
T 3clv_A 142 ---------------------------LK----------------------IS-SNYIIILVANKIDKNKFQVDILEVQK 171 (208)
T ss_dssp ---------------------------HH----------------------HH-SCCEEEEEEECTTCC-CCSCHHHHHH
T ss_pred ---------------------------HH----------------------hh-CCCcEEEEEECCCcccccCCHHHHHH
Confidence 00 00 1279999999999421 122332
Q ss_pred Hhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 259 LAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 259 l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+.+ ....+++||+++.|++++.+.|.+.+
T Consensus 172 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 222 23578899999999999999987754
No 151
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.57 E-value=9.5e-14 Score=115.38 Aligned_cols=152 Identities=23% Similarity=0.233 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++... ...++.|+.+.....+.+++. .+.++|+||..... ......+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 5899999999999999999998653 456777877777777888875 57899999953211 1222345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 117 (187)
T 2a9k_A 91 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 117 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765422 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 118 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 118 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp ----------HHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999998643 22222222 23578899999999999999998765
No 152
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.57 E-value=5.8e-14 Score=116.17 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||..... ......++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhhc
Confidence 5799999999999999999998765444455555666667777762 467899999943211 112234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++..+ .....
T Consensus 82 ~d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~-------- 112 (182)
T 1ky3_A 82 ADCCVLVYDVTNASS-FENIKSWRDEF----------------------------------------LVHAN-------- 112 (182)
T ss_dssp CCEEEEEEETTCHHH-HHTHHHHHHHH----------------------------------------HHHHC--------
T ss_pred CCEEEEEEECCChHH-HHHHHHHHHHH----------------------------------------HHHhc--------
Confidence 899999998865422 11111111110 00000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh------hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI------DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~------~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 113 -------------~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 113 -------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------------ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 000124799999999999532 22333332 34688999999999999999997754
No 153
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.56 E-value=6.8e-14 Score=117.80 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|..+.+.....+.+++. .+.++||||.... .......++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHHHHHHhcCC
Confidence 47999999999999999999987654444556666666777888774 5788999995321 11223445779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... +.+..++.. +..
T Consensus 100 d~iilV~D~~~~~s~-~~~~~~~~~-----------------------------------------i~~----------- 126 (192)
T 2il1_A 100 KGIILVYDITKKETF-DDLPKWMKM-----------------------------------------IDK----------- 126 (192)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH-----------------------------------------HHH-----------
Confidence 999999998654221 111111111 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+... ++.+.+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 127 -----------~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 127 -----------Y--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp -----------H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0124799999999998743 22333332 23578899999999999999987654
No 154
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.2e-13 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.....+.++|. .+.++||||.... .......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHHhcC
Confidence 47999999999999999999987655455566666777778888885 5788999995321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 100 d~~i~v~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 125 (201)
T 2ew1_A 100 NALILTYDITCEES-FRCLPEWLRE--------------------------------------------IE--------- 125 (201)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+. .....+.+||+++.|++++.+.|.+.+
T Consensus 126 ----------~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 126 ----------QY--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124789999999999743 2222222 134688999999999999999987765
No 155
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.56 E-value=5.8e-14 Score=116.72 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||++.+++... ...+..|+.+.....+.+++.. +.++||||...... .....+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHhccCC
Confidence 4799999999999999999997543 3455666666666677777765 45899999743211 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------~---------- 103 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPE--------------------------------------------V---------- 103 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------H----------
T ss_pred cEEEEEEECCChhhHHHHHHHHHHH--------------------------------------------H----------
Confidence 9999999986542211110011110 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----------------HHHHhc-C--CCeEEEeccccccHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLAR-Q--PNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----------------~~~l~~-~--~~~v~iSa~~~~~i~~l~ 280 (317)
.......|+++|+||+|+..... ...+.+ . ...+.+||++|.|++++.
T Consensus 104 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 104 ------------RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp ------------HHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred ------------HHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 00011479999999999875321 111211 1 267889999999999999
Q ss_pred HHHHHHhC
Q 021103 281 ARMWEEMG 288 (317)
Q Consensus 281 ~~i~~~l~ 288 (317)
+.|.+.+.
T Consensus 172 ~~l~~~~~ 179 (186)
T 1mh1_A 172 DEAIRAVL 179 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988763
No 156
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.56 E-value=6.9e-14 Score=118.62 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|.++.+.....+.+++ ..+.++||||....... ....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-------GVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-------CCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-------HHHHHhCC
Confidence 5799999999999999999998765544455666777777777776 46789999995332111 12345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +.....
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~--------- 111 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTF-KTLDSWRDE----------------------------------------FLIQAS--------- 111 (207)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHC---------
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcc---------
Confidence 999999998654221 111111111 000000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHh---cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... +....+. .....+.+||++|.|++++.+.|.+.+
T Consensus 112 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 112 ------------PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp ------------CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------cccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124799999999999742 2222222 234688999999999999999997765
No 157
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.2e-13 Score=116.20 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||++.+++... ..+++.|+.+.....+.+++ ..+.++|+||...... .....++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCCC
Confidence 4899999999999999999998743 45677777776667777777 4678899999643211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|......-. .+. .++.. +
T Consensus 91 d~~i~v~d~~~~~s~~-~~~~~~~~~--------------------------------------------~--------- 116 (194)
T 2atx_A 91 DVFLICFSVVNPASFQ-NVKEEWVPE--------------------------------------------L--------- 116 (194)
T ss_dssp SEEEEEEETTCHHHHH-HHHHTHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECCCHHHHH-HHHHHHHHH--------------------------------------------H---------
Confidence 9999999976542211 111 11111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----------------hHHHHh---cCCCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLA---RQPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----------------~~~~l~---~~~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+.... +...+. .....+.+||+++.|++++
T Consensus 117 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 117 -------------KEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183 (194)
T ss_dssp -------------HHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred -------------HHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHH
Confidence 0001147999999999997532 111121 1236889999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 184 ~~~l~~~i 191 (194)
T 2atx_A 184 FDEAIIAI 191 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 158
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.56 E-value=1.4e-13 Score=112.54 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=96.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
-+++++|++|+|||||+|.+++.... ..+.+++|... ..+.+++ ..+.++||||..... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 47999999999999999999987643 33444444433 3445555 467899999973211 11223457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... ..+..++..+ ...
T Consensus 78 ~~~~~i~v~d~~~~~s~-~~~~~~~~~l-----------------------------------------~~~-------- 107 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETF-STLKNWVREL-----------------------------------------RQH-------- 107 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHHHHH-----------------------------------------HHH--------
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHH-----------------------------------------HHh--------
Confidence 78999999988654221 1112221110 000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.....|+++|.||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 108 ----------------~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 108 ----------------GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ----------------SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----------------CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 01247899999999997532 2222222 245788999999999999999987653
No 159
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.56 E-value=8.3e-14 Score=114.05 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-------ALGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHhccC
Confidence 47999999999999999999987654444555555655667777765 46778999953211 1112245678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 105 (170)
T 1z08_A 80 NGAILVYDITDEDS-FQKVKNWVKE--------------------------------------------LR--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1122222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 106 ---------~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 106 ---------KML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp ---------HHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999999753 22333322 23578899999999999999998765
No 160
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.56 E-value=1e-13 Score=115.91 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECC-----------eeEEEecCCCccccccCCchhH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYND-----------TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g-----------~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.. ...+.+++ ..+.++|+||.... .
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------R 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------H
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------H
Confidence 47999999999999999999986543222232233332 33455554 36889999996321 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHh
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l 210 (317)
......++.+|.+++++|....... ..+..++.. +
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i 119 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSF-LNVRNWISQ--------------------------------------------L 119 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------H
Confidence 2233456789999999998654221 111111111 0
Q ss_pred cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 211 ~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ... .....|+++|+||+|+... +....+.. ....+.+||+++.|++++.+.|
T Consensus 120 ~------------------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 120 Q------------------MHA--YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp H------------------HHS--SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred H------------------Hhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000 0124799999999999752 22332321 2468999999999999999999
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 180 ~~~~ 183 (195)
T 3bc1_A 180 LDLI 183 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 161
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.56 E-value=2.8e-13 Score=109.87 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 3699999999999999999997643 3455666666666677777754 6789999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +.
T Consensus 76 ~~~i~v~d~~~~~~-~~~~~~~~~~--------------------------------------------i~--------- 101 (166)
T 2ce2_X 76 EGFLCVFAINNTKS-FEDIHQYREQ--------------------------------------------IK--------- 101 (166)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998764321 1111211111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|+||+|+... +....+.+ ..+.+.+||+++.|++++.+.|.+.+
T Consensus 102 ---------~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 102 ---------RVK--DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------HHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 0124799999999998753 22233322 24689999999999999999998765
No 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=2.2e-14 Score=122.15 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=91.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh---
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR--- 129 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~--- 129 (317)
+....+.+++|+|+||||||||+|+|+|.. ..+++.+|+|+.. +.+.+++ .+.++||||+....... ...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHH
Confidence 445568899999999999999999999987 2356778888754 4555554 67789999975321000 000
Q ss_pred -HHHHHhhhccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 130 -GRQVIAVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 130 -~~~~~~~~~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
....+.....++.++++.+....... ...+..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------------------------------------------- 134 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------------------------------------------- 134 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-------------------------------------------
Confidence 01111122356777777776432211 111111111
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----H---HHh-cC---CCeEEEeccccccH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----D---KLA-RQ---PNSVVISCNLKLNL 276 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~---~l~-~~---~~~v~iSa~~~~~i 276 (317)
....|.++|.||+|+.+.++. . .+. +. ...+++||+++.++
T Consensus 135 ----------------------------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 135 ----------------------------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp ----------------------------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred ----------------------------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 114688889999999875421 1 111 21 23578999999999
Q ss_pred HHHHHHHHHHhCe
Q 021103 277 DRLLARMWEEMGL 289 (317)
Q Consensus 277 ~~l~~~i~~~l~~ 289 (317)
+++.+.|.+.+..
T Consensus 187 ~~l~~~l~~~~~~ 199 (210)
T 1pui_A 187 DKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 163
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.55 E-value=1.8e-13 Score=111.78 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC--CccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v--~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+++|++|+|||||+|.+++..... .+..+++. ....+.+++ ..+.++|+||..... ......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~ 77 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYR 77 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhcc
Confidence 479999999999999999999765331 12223222 233455554 467889999953211 11233457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|...... ...+..++.. +.
T Consensus 78 ~~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~------- 105 (170)
T 1r2q_A 78 GAQAAIVVYDITNEES-FARAKNWVKE--------------------------------------------LQ------- 105 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH-------
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH-------
Confidence 8999999999865422 1112222111 00
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 106 -----------~~---~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 106 -----------RQ---ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -----------HH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -----------Hh---cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 00 0124789999999998643 22222222 234788999999999999999988653
No 164
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2.2e-13 Score=114.18 Aligned_cols=154 Identities=19% Similarity=0.146 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 58999999999999999999987644333444444555566677664 577889999543211 122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +...
T Consensus 89 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~~------- 116 (195)
T 1x3s_A 89 QGVILVYDVTRRDT-FVKLDNWLNE--------------------------------------------LETY------- 116 (195)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HTTC-------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHHh-------
Confidence 99999999865422 1112222211 1000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 117 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 117 -------------CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp -------------CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------cCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00124799999999999542 22222222 234788999999999999999988763
No 165
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.55 E-value=1.3e-13 Score=115.80 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhccC
Confidence 37999999999999999999987654444555566666677888775 678899999533111 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 95 d~ii~v~d~~~~~s-~~~~~~~l~~--------------------------------------------i~--------- 120 (191)
T 2a5j_A 95 AGALLVYDITRRET-FNHLTSWLED--------------------------------------------AR--------- 120 (191)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 121 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 121 ---------Q-H--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999642 22232222 23578899999999999999987654
No 166
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.1e-13 Score=116.37 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEEC--CeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~--g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+|+|++|+|||||+|.+++... ...+.+++|.... .+.++ +..+.++||||..... ......++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK--TVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE--EEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE--EEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 4799999999999999999998763 2445555554443 33333 3568899999953211 11223457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... ..+..++.. +.
T Consensus 95 ~~d~iilV~d~~~~~s~-~~~~~~~~~--------------------------------------------i~------- 122 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSF-YTLKKWVKE--------------------------------------------LK------- 122 (192)
T ss_dssp TCSEEEEEEETTCTHHH-HHHHHHHHH--------------------------------------------HH-------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHHHH--------------------------------------------HH-------
Confidence 79999999998654321 112222211 10
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+... ++...+.+. ...+.+||+++.|++++.+.|.+.+.
T Consensus 123 ------------~~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 123 ------------EH--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ------------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------Hh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 0124799999999999742 233333322 34788999999999999999988764
No 167
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.55 E-value=2.9e-13 Score=111.56 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+++++|++|+|||||+|.|++.... ..++.| +.+.....+.+++. .+.++||||..... ......++.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhcc
Confidence 47999999999999999999987643 223332 33334445666664 57889999953211 123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++.. +.
T Consensus 88 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~-------- 114 (179)
T 1z0f_A 88 AAGALMVYDITRRST-YNHLSSWLTD--------------------------------------------AR-------- 114 (179)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEeCcCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865421 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 115 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 115 -----------NL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999643 22233322 23578899999999999999988765
No 168
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.54 E-value=1.9e-13 Score=114.46 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|..+.+.....+.+++. .+.++|+||...... .....+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-------ITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-------SGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-------hHHHhccCC
Confidence 37999999999999999999987643232333333333445566654 678899999533211 122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 96 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 121 (189)
T 2gf9_A 96 MGFLLMYDIANQES-FAAVQDWATQ--------------------------------------------IK--------- 121 (189)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 122 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 122 ---------T-Y--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999753 22333322 23578999999999999999998765
No 169
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=117.34 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.....+.+++. .+.++|+||.... .......++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHHhhC
Confidence 47999999999999999999876543222233334555667778774 6789999995321 11223456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 103 d~iilv~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 128 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVPHWIED--------------------------------------------VR--------- 128 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999764321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc-C-C-CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR-Q-P-NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~-~-~-~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.+ . . ..+.+||+++.|++++.+.|.+.+
T Consensus 129 ---------~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 129 ---------KY---AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999742 22333322 1 2 568899999999999999998765
No 170
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.54 E-value=2.3e-13 Score=113.83 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|.+|||||||+|.|++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 4899999999999999999997643 3566777777777788888754 7889999953211 1112345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ ..
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~----------- 120 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYREQI-----------------------------------------KR----------- 120 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999998765422 11122211110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 121 -----------~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 121 -----------VK-DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp -----------HH-TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------Hh-CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 0124799999999998752 23333322 246899999999999999999987764
No 171
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.54 E-value=4.9e-14 Score=117.71 Aligned_cols=162 Identities=23% Similarity=0.282 Sum_probs=97.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC---chh----HHHHHhh
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG---KGR----GRQVIAV 136 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~~~----~~~~~~~ 136 (317)
+|+++|++|||||||+|.+++....++..|++|.++... .+. .+.++||||+....... ... .......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999887778889998877543 343 67889999964321100 000 1111112
Q ss_pred -hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 -SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 -~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
...+++++++.+...... ....+... +. +.. ...++
T Consensus 79 ~~~~~~~v~~v~d~~s~~~---~~~~~~~~-~~-----------------------------~~~--~~~~~-------- 115 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPE---IIKRWEKR-GE-----------------------------IPI--DVEFY-------- 115 (190)
T ss_dssp HGGGCCEEEEEEETTHHHH---HHHHHHHT-TC-----------------------------CCH--HHHHH--------
T ss_pred hhccCCEEEEEEcchhhhh---HHHhhhcc-Cc-----------------------------cHH--HHHHH--------
Confidence 344667777777532111 00111110 00 000 00011
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--hHHHHhc---CC------CeEEEeccccccHHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKLAR---QP------NSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~l~~---~~------~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..+. ....|+++|.||+|+.... ..+.+.+ .+ .++.+||++|.|++++.+.|.
T Consensus 116 --------------~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 116 --------------QFLR--ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp --------------HHHH--HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred --------------HHHH--hcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 1111 1247999999999998642 3333322 11 368999999999999999998
Q ss_pred HHhC
Q 021103 285 EEMG 288 (317)
Q Consensus 285 ~~l~ 288 (317)
+.+.
T Consensus 180 ~~~~ 183 (190)
T 2cxx_A 180 EVIR 183 (190)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7763
No 172
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.54 E-value=8.7e-14 Score=119.29 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||++.+++...+ ..+..|+.+.....+.+++. .+.++||||..... ......+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 47999999999999999999976532 44556666666667778776 57789999953211 1112235678
Q ss_pred cEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|......- ..+. .++.. +
T Consensus 107 d~~i~v~d~~~~~s~-~~~~~~~~~~--------------------------------------------~--------- 132 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSF-DNIFNRWYPE--------------------------------------------V--------- 132 (214)
T ss_dssp EEEEEEEETTCHHHH-HHHHHTHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHH--------------------------------------------H---------
Confidence 999999997654221 1111 11111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----------------HHHHh-cC--CCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLA-RQ--PNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----------------~~~l~-~~--~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+..... ...+. .. ...+.+||++|.|++++
T Consensus 133 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el 199 (214)
T 2j1l_A 133 -------------NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAV 199 (214)
T ss_dssp -------------HHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred -------------HHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 00012479999999999975431 12222 12 25789999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 200 ~~~l~~~~ 207 (214)
T 2j1l_A 200 FQEAAEVA 207 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 173
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=4.1e-15 Score=137.40 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=36.7
Q ss_pred eeeeEEEecccCCChhh----HHHHh-----------c-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDD----VDKLA-----------R-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~----~~~l~-----------~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+..... ...+. . .++++++||+++.|+++|++.|.+.+.
T Consensus 213 ~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 213 MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 47799999999975432 11121 1 245788999999999999999988764
No 174
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.54 E-value=7.9e-15 Score=134.83 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=27.2
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+++....|.+++|+|+||||||||+|+|+|...
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 334445689999999999999999999997653
No 175
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=116.75 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-------VTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-------HHHHHhccC
Confidence 4799999999999999999998765545556666666677788887 5688999999532111 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 99 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 124 (200)
T 2o52_A 99 AGALLVYDITSRET-YNSLAAWLTD--------------------------------------------AR--------- 124 (200)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 125 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 125 ---------T-L--ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ---------H-H--TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 01247999999999996432 2222222 23578899999999999999997765
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=1.4e-15 Score=137.68 Aligned_cols=90 Identities=9% Similarity=0.016 Sum_probs=55.7
Q ss_pred cccCCcccccceeeeeeE-----eeecCCCCC-CCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEE
Q 021103 171 NKRPPQIYFKKKKTGGIS-----FNSTLPLTH-VDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYV 244 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia-----lilDEPt~~-LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v 244 (317)
+.++..+|+|++||+.++ +++||||++ ||+... ++++.+. ...|+++|
T Consensus 108 ~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~~l~~l~-------------------------~~~~iilV 161 (301)
T 2qnr_A 108 ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH-------------------------NKVNIVPV 161 (301)
T ss_dssp HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-HHHHHHT-------------------------TTSCEEEE
T ss_pred HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-HHHHHHH-------------------------hcCCEEEE
Confidence 345678999999999874 889999985 999763 4444332 13578999
Q ss_pred EecccCCChhhHH----H---H-hc-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 245 YNKIDVIGIDDVD----K---L-AR-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 245 ~NK~D~~~~~~~~----~---l-~~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+||.|+....++. . . .. ....+.+||+++ +++++.+.+.+.+
T Consensus 162 ~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 162 IAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 9999998754321 1 1 11 235678999999 9999877776554
No 177
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.54 E-value=3.5e-13 Score=114.04 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++. .+.++||||.... .......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhhcCC
Confidence 47999999999999999999987643222233333333445566654 6788999996321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 82 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (203)
T 1zbd_A 82 MGFILMYDITNEES-FNAVQDWSTQ--------------------------------------------IK--------- 107 (203)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+.... ....+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 108 ----------TY--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp ----------HH--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222222 23578899999999999999887765
No 178
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.54 E-value=2e-13 Score=111.46 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-+++++|++|||||||+|.++|... +.++.+++|... .+.+++.. +.++|+||...... .....++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 4799999999999999999998765 366777877753 45666654 56889998543111 11223467
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...+.. .+.+..++..+ ...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~---------- 101 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASELRVQL----------------------------------------RRA---------- 101 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHH----------------------------------------HHC----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HHh----------
Confidence 899999998765422 11122111110 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+.... +...+.. ....+.+||++|.|++++.+.|.+.+
T Consensus 102 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 102 --------------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 001247999999999997432 2222222 24578899999999999999998765
No 179
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.53 E-value=1.2e-13 Score=118.32 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC------------eeEEEecCCCccccccCCchhH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g------------~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||.... .
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-------R 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-------H
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-------H
Confidence 4799999999999999999998754333333334444445555553 46889999984221 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHh
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l 210 (317)
......++.+|.+++++|...... ...+..++..+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i-------------------------------------------- 133 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQL-------------------------------------------- 133 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTC--------------------------------------------
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHH--------------------------------------------
Confidence 122345678999999999865422 12222222221
Q ss_pred cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 211 ~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
... ......|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|
T Consensus 134 ~~~--------------------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 134 QAN--------------------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CCC--------------------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHh--------------------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 000 00024799999999999743 22333322 2468899999999999999999
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 194 ~~~i 197 (217)
T 2f7s_A 194 LDLI 197 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 180
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.2e-13 Score=117.57 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++...+ ..+..|+.+.....+.+++. .+.++||||...... .....+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-------TGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcCCC
Confidence 58999999999999999999987644 33445555555556777774 577889999643211 112345679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999987653
No 181
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.53 E-value=3.8e-13 Score=111.22 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|.+|||||||++.+++..... +..|+.+.....+.+++.. +.++||||... ...++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 479999999999999999999865431 3334444445567777754 67799998532 1234679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..+++. +..+.
T Consensus 74 d~~ilv~D~~~~~s-~~~~~~~~~~-----------------------------------------i~~~~--------- 102 (178)
T 2iwr_A 74 DAVIFVFSLEDENS-FQAVSRLHGQ-----------------------------------------LSSLR--------- 102 (178)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH-----------------------------------------HHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH-----------------------------------------HHHHH---------
Confidence 99999999865432 1122221111 11100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCC-------hhhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-------IDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-------~~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|.||+|+.. .++...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 103 ------------GEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ------------CSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------hcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 00012579999999999831 233333322 23578899999999999999987654
No 182
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.53 E-value=3.3e-15 Score=136.63 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=47.9
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHH
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDV 231 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~ 231 (317)
.+.++..||+||+||+.+| +++||||++||+.....+++.+. ...++|++||+..+.+.+|.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCce
Confidence 3456789999999999766 78999999999998666555443 23389999999776666554
No 183
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.53 E-value=1.7e-15 Score=140.82 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=45.4
Q ss_pred cccCCcccccceeeeeeE---------------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 171 NKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia---------------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
++++.+|||||+||+.|| +++||||++||+.....+++.+ ...+ ++|++|||.....
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE 349 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 567889999999999863 8999999999999876655544 3334 9999999976543
No 184
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-13 Score=117.32 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||++.|++........|..+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-------ITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh-------hHHHHhccC
Confidence 4799999999999999999998765544556666666667788887 4678999999533211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 87 d~vilV~D~~~~~s-~~~~~~~l~~--------------------------------------------i~--------- 112 (223)
T 3cpj_B 87 VGALIVYDISKSSS-YENCNHWLSE--------------------------------------------LR--------- 112 (223)
T ss_dssp CEEEEEEC-CCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998765422 1112222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 113 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 113 ---------E-N--ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ---------H-H--CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred ---------H-h--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0124799999999999642 22233322 235778999999999999999987763
No 185
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.53 E-value=4.1e-14 Score=117.36 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+++++|++|+|||||++.+++... ..+++.|+.+.....+.+++.. +.++||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 46899999999999999999997653 3455666655444444555544 5589999953211 112234577
Q ss_pred CcEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|.+++++|........ .+. .++.. +
T Consensus 80 ~d~~i~v~d~~~~~s~~-~~~~~~~~~--------------------------------------------~-------- 106 (182)
T 3bwd_D 80 ADVFILAFSLISKASYE-NVSKKWIPE--------------------------------------------L-------- 106 (182)
T ss_dssp CSEEEEEEETTCHHHHH-HHHHTHHHH--------------------------------------------H--------
T ss_pred CCEEEEEEECCCHHHHH-HHHHHHHHH--------------------------------------------H--------
Confidence 99999999976542211 111 11110 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---------------HHHHh---cCCCeEEEeccccccHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---------------VDKLA---RQPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---------------~~~l~---~~~~~v~iSa~~~~~i~~l~ 280 (317)
.......|+++|.||+|+..... ...+. .....+.+||+++.|++++.
T Consensus 107 --------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 107 --------------KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172 (182)
T ss_dssp --------------HHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred --------------HHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHH
Confidence 00011479999999999864322 12222 12367889999999999999
Q ss_pred HHHHHHh
Q 021103 281 ARMWEEM 287 (317)
Q Consensus 281 ~~i~~~l 287 (317)
+.|.+.+
T Consensus 173 ~~l~~~i 179 (182)
T 3bwd_D 173 DAAIRVV 179 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 186
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=9.4e-14 Score=133.57 Aligned_cols=149 Identities=21% Similarity=0.288 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC-------CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~-------~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
.+++++|..|+|||||+++|+|.. .+....+|+|.+.....+.+++..+.++||||..+ +......
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHHH
Confidence 589999999999999999999876 23456778999988888888999999999999632 2234455
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..+|.+++++|+......+. .+.+. +++.
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt--~e~l~-----------------------------------------~~~~------ 123 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQT--GEHML-----------------------------------------ILDH------ 123 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHH--HHHHH-----------------------------------------HHHH------
T ss_pred HHhhCCEEEEEEecCCCccHHH--HHHHH-----------------------------------------HHHH------
Confidence 6778999999999865321110 01110 0000
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------H-Hhc-----CCCeEEEeccccccHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------K-LAR-----QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~-l~~-----~~~~v~iSa~~~~~i~~l~~~ 282 (317)
...|.++|+||+|+...+..+ . +.. ..+++++||++|.|+++|.+.
T Consensus 124 ---------------------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 124 ---------------------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp ---------------------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred ---------------------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 136789999999998754322 1 111 246899999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.++
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988764
No 187
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.53 E-value=3.6e-13 Score=113.04 Aligned_cols=152 Identities=19% Similarity=0.162 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 4799999999999999999998764322222222223333445544 457889999974321 1122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +..
T Consensus 99 d~vi~v~D~~~~~s-~~~~~~~l~~--------------------------------------------i~~-------- 125 (193)
T 2oil_A 99 VGALLVFDLTKHQT-YAVVERWLKE--------------------------------------------LYD-------- 125 (193)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HHT--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999865322 1111111111 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 126 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 126 -------------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00124799999999999743 22223322 23578899999999999999987754
No 188
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.53 E-value=2.5e-13 Score=115.13 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|.+|+|||||++.+++...+ ..+..|+.......+.+++. .+.++|+||...... .....+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------HHHHhcCCC
Confidence 48999999999999999999987644 23333433334456777775 577899999532111 112245679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999987653
No 189
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.52 E-value=9.9e-14 Score=116.13 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+.+.... ...| |.......+.+++..+.++||||....... ....++.+|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPY-------WRCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCC-------CSSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHH-------HHHHhhcCC
Confidence 458999999999999999999765432 1122 444556678888899999999996432111 112346799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+..- ..+...+..+ + ..
T Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~---~~--------- 118 (189)
T 2x77_A 92 AVIYVVDSTDRDRM-GVAKHELYAL----------------------------------------L---DE--------- 118 (189)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHHH----------------------------------------H---TC---------
T ss_pred EEEEEEeCCCHHHH-HHHHHHHHHH----------------------------------------H---hh---------
Confidence 99999998654321 1111111110 0 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.+.
T Consensus 119 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 119 ------------DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp ------------STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 00124799999999999864 2222111 11 14788999999999999999987663
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.52 E-value=2.2e-13 Score=114.75 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|+||||||||+|+++|...+....|..+.+...|.+.++|.++. ++|++|..... ....+ .++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~---~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----AITSA---YYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----CCCHH---HHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----hhhHH---HhhcC
Confidence 47999999999999999999999877666777778888999999998654 58999864321 11122 23567
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|...... .+.+..++.. +.
T Consensus 103 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 128 (191)
T 1oix_A 103 VGALLVYDIAKHLT-YENVERWLKE--------------------------------------------LR--------- 128 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 77888887654321 1111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcCC--CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQP--NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~~--~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... +....+...+ ..+.+||+++.+++++.+.|.+.+
T Consensus 129 ----------~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 129 ----------DH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 00 0124689999999998642 2223333333 356689999999999999987653
No 191
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.52 E-value=2.6e-13 Score=111.63 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=92.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|++|+|||||+|.+++.... ..+.+++|. ....+.+++. .+.++|+||...... . ......++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~---~--~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK---S--WSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC----------C--HHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch---h--hhHHhhccc
Confidence 47999999999999999999987643 344455543 3456777775 567899999643100 0 111234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++++...... ...+..++.. +..
T Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------l~~------- 105 (175)
T 2nzj_A 78 GSAYVIVYSIADRGS-FESASELRIQ--------------------------------------------LRR------- 105 (175)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHH-------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH-------
Confidence 899999998765322 1111111111 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+.. ....+.+||++|.|++++.+.|.+.+
T Consensus 106 ------------~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 106 ------------TH-QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ------------CC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------hh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222221 23578899999999999999998765
No 192
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.52 E-value=8e-13 Score=109.77 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++... ...++.|+.+.....+.+++..+ .++|+||...... .....++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 4799999999999999999997643 34566666666677778888764 4599999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +...
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 118 (183)
T 3kkq_A 91 DGFLIVYSVTDKAS-FEHVDRFHQL----------------------------------------ILRV----------- 118 (183)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 99999999865421 1111111111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEecc-ccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCN-LKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~-~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||+ ++.|++++.+.|.+.+
T Consensus 119 -----------~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 119 -----------K--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -----------H--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -----------c--CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 0 1125799999999998742 22222222 2568899999 9999999999998765
No 193
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.51 E-value=6.2e-13 Score=111.33 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++||||..... . ......++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-----~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-K-----SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-T-----TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh-h-----hhhHHHhcCC
Confidence 58999999999999999999976654444555555666677778774 67899999953211 0 1122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +...
T Consensus 95 d~iilv~D~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 122 (189)
T 1z06_A 95 HAVVFVYDMTNMASF-HSLPAWIEE----------------------------------------CKQH----------- 122 (189)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999998653221 111111111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEecccc---ccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLK---LNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~---~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+... ++...+.. ....+.+||+++ .|++++.+.|.+.+
T Consensus 123 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 123 -----------L--LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp -----------C--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred -----------c--CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 0 0124799999999999643 22333322 236889999999 99999998886654
No 194
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.51 E-value=6.8e-13 Score=111.05 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++..... .+. .|.+.....+.++|.. +.++||+|.... . .++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcC-CCcceEEEEEEECCEEEEEEEEECCCChhh---------h---eecCC
Confidence 589999999999999999888765332 122 2334444677888865 566999985321 1 44678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +..
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 113 (184)
T 3ihw_A 87 DAVVFVFSLEDEIS-FQTVYNYFLR--------------------------------------------LCS-------- 113 (184)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHT--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999875422 1122222211 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCC-------hhhHHHHhc-C--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-------IDDVDKLAR-Q--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-------~~~~~~l~~-~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|.||+|+.. .++...+.. . ...+.+||+++.|++++.+.+.+.+
T Consensus 114 -----------~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 114 -----------F-RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -----------T-SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------h-cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 0012479999999999842 223333322 2 4578899999999999999987765
No 195
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.51 E-value=1.8e-13 Score=116.69 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||++.+++... ..+++.|+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCC
Confidence 4799999999999999999997653 356667776666667777764 678999999643211 112245779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +.
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~--------------------------------------------~~--------- 108 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPE--------------------------------------------LR--------- 108 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH--------------------------------------------HH---------
Confidence 9999999976543211110011111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-------------HHHHhc---CCCeEEEeccccccHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-------------VDKLAR---QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-------------~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
......|+++|.||+|+..... ...+.. ....+.+||+++.|++++.+.|.
T Consensus 109 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 109 -------------RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp -------------HHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 0011479999999999865321 222221 23678899999999999999998
Q ss_pred HHhC
Q 021103 285 EEMG 288 (317)
Q Consensus 285 ~~l~ 288 (317)
+.+.
T Consensus 176 ~~~~ 179 (212)
T 2j0v_A 176 KVVL 179 (212)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 196
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.7e-14 Score=138.09 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCc-------------------------------cccceeeeeeEEEEECCee
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAAS-------------------------------YEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~-------------------------------~p~tT~~~~~G~i~~~g~~ 110 (317)
..+|+|+|.+|+|||||+|.|++....+.. .+|+|++.....+...+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 468999999999999999999977544332 2688999998899998999
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+.++||||... +.......+..+|++++++|+..
T Consensus 247 ~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 247 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 99999999743 22344556778999999999864
No 197
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.51 E-value=4.2e-13 Score=113.58 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|+||||||||+++|+|...+....|..+.++..|.+.++|.. +.++|++|...... . ....++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~-----~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--I-----TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--C-----CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--h-----hHHHHhcC
Confidence 479999999999999999999987655555666677889999999975 45789998532111 1 11233567
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|...... ...+..++.. +.
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 104 (199)
T 2f9l_A 79 VGALLVYDIAKHLT-YENVERWLKE--------------------------------------------LR--------- 104 (199)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 88888888754321 1111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcCC--CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQP--NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~~--~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+...+ ..+.+||+++.+++++.+.|.+.+
T Consensus 105 ----------~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 105 ----------DH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0114689999999999642 2223333323 356699999999999999987765
No 198
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.1e-13 Score=110.60 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++...... +..|+-......+.+++. .+.++||||..... ......+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 4799999999999999999998653211 112211222233455554 57889999964311 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +..
T Consensus 76 ~~~i~v~d~~~~~~~-~~~~~~~~~-----------------------------------------i~~----------- 102 (172)
T 2erx_A 76 HAFILVYSITSRQSL-EELKPIYEQ-----------------------------------------ICE----------- 102 (172)
T ss_dssp SEEEEEEETTCHHHH-HTTHHHHHH-----------------------------------------HHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH-----------------------------------------HHH-----------
Confidence 999999987653211 111111100 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
........|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 103 -----------~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 103 -----------IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp -----------HHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----------HhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 00011247999999999986432 2222221 235788999999999999999988764
No 199
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=122.77 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++||||...... .....++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC-------CSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhhcC
Confidence 47999999999999999999987766666788888888888889884 578899999533211 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ ..
T Consensus 107 d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~-------- 133 (199)
T 3l0i_B 107 HGIIVVYDVTDQES-FNNVKQWLQEI--------------------------------------------DR-------- 133 (199)
T ss_dssp SEEEECC-CCCSHH-HHHHHHHHHHH--------------------------------------------HS--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------HH--------
Confidence 99999999875432 11222222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+.... ....+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 134 -------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 134 -------------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -------------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred -------------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001247999999999997442 2222322 245788999999999999999877653
No 200
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.50 E-value=4.8e-13 Score=113.13 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=93.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++|+||.... .......++.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-------HHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hhhHHHHHhh
Confidence 568999999999999999999987533222222223333455667664 5789999995321 1122334677
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|....... ..+..++.. +..
T Consensus 101 ~d~iilv~d~~~~~s~-~~~~~~~~~-----------------------------------------i~~---------- 128 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSF-LNIREWVDM-----------------------------------------IED---------- 128 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HHH----------
T ss_pred CCEEEEEEECCChHHH-HHHHHHHHH-----------------------------------------HHH----------
Confidence 9999999997654221 111111111 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----------hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----------~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|+||+|+... ++.+.+.. ....+.+||+++.|++++.+.|.+.
T Consensus 129 ------------~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 129 ------------A--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp ------------H--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------h--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0 0124799999999998621 11222221 2357889999999999999999876
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 195 i~ 196 (199)
T 2p5s_A 195 VK 196 (199)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 201
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.50 E-value=1.3e-13 Score=123.10 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccc------cceeeeeeEEE--EECCe--eEEEecCCCccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE------FTTLTCIPGII--HYNDT--KIQLLDLPGIIE 121 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p------~tT~~~~~G~i--~~~g~--~i~~~d~~g~~~ 121 (317)
.+|+|+|.+|+|||||+|+|++......++| ..|........ ..+|. .+.++||||+.+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 4799999999999999999998876655553 44444444444 44553 788999999854
No 202
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.50 E-value=3.3e-13 Score=122.45 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
+.+|+|+|.+|||||||+|.+++...+ +++++++|++...+.+.+ ++..+.++||||....... . ........++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~-~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN-Y-FTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH-H-HTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh-h-hhhHHHHHhcc
Confidence 358999999999999999998887544 678999999999999887 5678899999996431000 0 00112234578
Q ss_pred CcEEEEEecCCCc
Q 021103 140 SDIVLMVLDASKS 152 (317)
Q Consensus 140 ~d~i~~v~~~~~~ 152 (317)
+|.+++++|....
T Consensus 81 ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 81 VQVLIHVFDVEST 93 (307)
T ss_dssp CSEEEEEEETTCS
T ss_pred CCEEEEEEECCCh
Confidence 9999999998754
No 203
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=117.19 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|.+|||||||+|.|++.... ..++.|+.......+.+++ ..+.++||||...... .....++.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHhc
Confidence 458999999999999999999987644 4555565555555555544 4578999999543211 12234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++..+ ..
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~------- 123 (201)
T 3oes_A 96 VHGYVLVYSVTSLHS-FQVIESLYQKL--------------------------------------------HE------- 123 (201)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------HC-------
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHHHH--------------------------------------------HH-------
Confidence 999999999865422 11222222111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+..
T Consensus 124 -----------~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 124 -----------GH--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp ------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------hc--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 00 01247999999999987432 2222221 2457889999999999999999887743
No 204
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.50 E-value=3e-13 Score=113.39 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccce------eeeeeEEE-------EECC--eeEEEecCCCccccccCCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT------LTCIPGII-------HYND--TKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT------~~~~~G~i-------~~~g--~~i~~~d~~g~~~~~~~~~ 127 (317)
.+|+|+|++|||||||+|.+.|.... .+..++ ..++.|.- .+++ ..+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 47999999999999999999987643 121111 11222211 1222 457889999953211
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhh--HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHH
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGH--RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQ 205 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~ 205 (317)
......++.+|.+++++|....... ...+.. +..
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~-----------------------------------------l~~ 124 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMRN-----------------------------------------MRE 124 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHH-----------------------------------------HHH
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHH-----------------------------------------HHH
Confidence 1222356789999999998633111 111110 111
Q ss_pred HHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC--C-CeEEEeccccccHHHH
Q 021103 206 ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--P-NSVVISCNLKLNLDRL 279 (317)
Q Consensus 206 ~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~--~-~~v~iSa~~~~~i~~l 279 (317)
.+..+ .......|+++|.||+|+... ++...+.+. . ..+.+||+++.|++++
T Consensus 125 ~l~~~----------------------~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 125 NLAEY----------------------GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp HHHHT----------------------TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred HHHhh----------------------ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 11111 011235799999999999754 333333322 2 6789999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 183 ~~~l~~~i 190 (198)
T 3t1o_A 183 LKEVSRLV 190 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
No 205
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.49 E-value=3.3e-14 Score=122.37 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHH-HhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTL-LTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~-L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|||||||+|. +.|.... ..+.+++|.......+...+..+.++||||...... .....++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-------HHHHHHhcC
Confidence 4799999999999999999 5555433 566778887776554433345678899999532111 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 89 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 114 (221)
T 3gj0_A 89 QCAIIMFDVTSRVT-YKNVPNWHRD--------------------------------------------LV--------- 114 (221)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999875422 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+....... .+. .....+.+||+++.|++++.+.|.+.+
T Consensus 115 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 115 -------------RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------------HHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 001147999999999997542211 111 134578899999999999999998775
No 206
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.49 E-value=4.9e-13 Score=122.52 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|+|||||++.+++... +..+| |+......+.+.+..+.++||||-.... ......++.+|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 234 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 234 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 45899999999999999999987653 23344 7777778888889999999999942211 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......-. .+...+.. ++..
T Consensus 235 ~vilV~D~~~~~s~~-~~~~~~~~----------------------------------------~~~~------------ 261 (329)
T 3o47_A 235 GLIFVVDSNDRERVN-EAREELMR----------------------------------------MLAE------------ 261 (329)
T ss_dssp EEEEEEETTCSSSHH-HHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECCchHHHH-HHHHHHHH----------------------------------------HHhh------------
Confidence 999999986432211 11111110 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHhcC-------CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLARQ-------PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~~~-------~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+......+ ..... ..++.+||++|.|++++.+.|.+.+.
T Consensus 262 ------------~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 262 ------------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ------------hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 001247999999999998643222 21111 13788999999999999999988764
No 207
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=7.3e-13 Score=111.63 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.+++.... ..+..|+.+.....+.+++. .+.++|+||... . ......++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhcc
Confidence 468999999999999999999986532 34455554445556777764 478899999754 1 122334567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. + .
T Consensus 99 ~d~iilv~D~~~~~s-~~~~~~~~~~----------------------------------------i-~----------- 125 (196)
T 2atv_A 99 GEGFVLVYDITDRGS-FEEVLPLKNI----------------------------------------L-D----------- 125 (196)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------H-H-----------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHH----------------------------------------H-H-----------
Confidence 899999999865422 1111111111 0 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccc-cHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~-~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++...+.+ ....+.+||+++. |++++.+.|.+.+
T Consensus 126 ----------~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 126 ----------EIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ----------HHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ----------Hhh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 000 0125799999999999753 22222221 2357889999999 9999999997765
No 208
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.49 E-value=7.3e-13 Score=124.67 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeee-----EEE--------------EECCeeEEEecCCCccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIP-----GII--------------HYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~-----G~i--------------~~~g~~i~~~d~~g~~~ 121 (317)
..+|+++|.+|+|||||+|+|+|.... ...++.+|..... ..+ ......+.++||||..+
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 458999999999999999999996532 3334444331100 000 01125788999999532
Q ss_pred cccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHH
Q 021103 122 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 201 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~ 201 (317)
+.......+..+|.+++++|+.......+ ..+.+.
T Consensus 88 -------~~~~~~~~~~~~D~~ilVvda~~~~~~~q-t~~~~~------------------------------------- 122 (403)
T 3sjy_A 88 -------LMATMLSGAALMDGAILVVAANEPFPQPQ-TREHFV------------------------------------- 122 (403)
T ss_dssp -------GHHHHHHHHTTCSEEEEEEETTSCSSCHH-HHHHHH-------------------------------------
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCCCcHH-HHHHHH-------------------------------------
Confidence 22344556678999999999875421111 111110
Q ss_pred HHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc--------CCCeEEEe
Q 021103 202 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR--------QPNSVVIS 269 (317)
Q Consensus 202 ~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~--------~~~~v~iS 269 (317)
++..+ ..+|+++|+||+|+...++.. .+.+ ..+++++|
T Consensus 123 ----~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 123 ----ALGII--------------------------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp ----HHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred ----HHHHc--------------------------CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 00000 125889999999998765332 2211 24689999
Q ss_pred ccccccHHHHHHHHHHHhC
Q 021103 270 CNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 270 a~~~~~i~~l~~~i~~~l~ 288 (317)
|++|.|+++|++.|.+.+.
T Consensus 173 A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 173 ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTBSHHHHHHHHHHHSC
T ss_pred CCCCcChHHHHHHHHHhCC
Confidence 9999999999999988654
No 209
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=1.1e-12 Score=110.38 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.|++..... .+..|+-......+.+++. .+.++||||..... ......+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 4589999999999999999999865331 1211211222233455554 57889999953211 112234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++++....... ..+..++. .+..
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~~-----------------------------------------~i~~---------- 107 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSL-EELGPIYK-----------------------------------------LIVQ---------- 107 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTTHHHHH-----------------------------------------HHHH----------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHH-----------------------------------------HHHH----------
Confidence 8999999987653211 11111110 0100
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
........|+++|+||+|+...+ +...+.. ....+.+||+++.|++++.+.|.+.+...
T Consensus 108 ------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 108 ------------IKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp ------------HHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred ------------HhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 11111247999999999997532 2222221 23578899999999999999999887543
No 210
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.48 E-value=1.6e-12 Score=108.99 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||++.+++... ...++.|+.+.....+.+++. .+.++||+|...... ....++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 91 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CERYLNW 91 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHHHHhh
Confidence 35899999999999999999998653 356666766665556677765 467899999643211 1124567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...... .+.+..++..+
T Consensus 92 ~~~~ilv~d~~~~~s-~~~~~~~~~~i----------------------------------------------------- 117 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQS-FDSSSSYLELL----------------------------------------------------- 117 (187)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHHH-----------------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------------------
Confidence 899999998765321 11222222111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEec-cccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISC-NLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa-~~~~~i~~l~~~i~~~l 287 (317)
...........|+++|.||+|+... ++...+.+ ....+.+|| +++.|++++.+.|.+.+
T Consensus 118 ---------~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 118 ---------ALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ---------HHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ---------HHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 0000000125799999999999642 22222222 235788999 89999999999997754
No 211
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.48 E-value=6.7e-13 Score=113.34 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---CeeEEEecCCCccccccCCchhHH-HHHhhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGR-QVIAVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~-~~~~~~ 137 (317)
..+|+|+|++|+|||||++.+++... ...++.++.+ ...+.++ +..+.++||||..... . .....+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLR-------FQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHH-------HHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCccee--eEEEEecCCCccEEEEEECCCChhHH-------HHHHHHHH
Confidence 35899999999999999999997653 3455544433 3447776 5678999999964211 1 111236
Q ss_pred ccCcEEEEEecCCC
Q 021103 138 KSSDIVLMVLDASK 151 (317)
Q Consensus 138 ~~~d~i~~v~~~~~ 151 (317)
+.+|.+++++|...
T Consensus 77 ~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 77 SSARAVVFVVDSAA 90 (214)
T ss_dssp GGEEEEEEEEETTT
T ss_pred hhCCEEEEEEECCC
Confidence 77999999999765
No 212
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.48 E-value=4.8e-13 Score=127.25 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-------------------------------CCccccceeeeeeEEEEECCee
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-------------------------------AASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-------------------------------v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
..+++++|.+|+|||||++.|++.... ....+|+|.+.....+.+++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 458999999999999999999654321 1122678999888888888999
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.++||||..+. .......+..+|.+++++|+...
T Consensus 97 ~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 97 FTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCC
Confidence 999999996431 23444556789999999998653
No 213
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.48 E-value=6.9e-13 Score=110.65 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|+|||||+|.+++...+ ..+..|+.......+.+++ ..+.++|+||...... .....+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcCCC
Confidence 47999999999999999999986543 3333343333344556655 3578899999532110 112245779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 80 ~~~i~v~d~~~~ 91 (184)
T 1m7b_A 80 DAVLICFDISRP 91 (184)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999998654
No 214
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.48 E-value=2.5e-13 Score=131.79 Aligned_cols=83 Identities=29% Similarity=0.319 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC----------------CCC------ccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~----------------~v~------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
..++|+|.+|||||||+|.|++... .+. ..+|+|.......+.+.+..+.++||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 4799999999999999999962211 011 236788888888999999999999999975
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.. ......++.+|.+++++|+...
T Consensus 94 df~-------~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DFT-------EDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 421 2345567889999999998753
No 215
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.47 E-value=1.8e-14 Score=129.68 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=35.8
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc--------CCCeEEEeccccccHHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~--------~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
..|+++|+||+|+..... .+.+.. +..++++||+++.|++++.+.|.+.
T Consensus 192 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 479999999999985432 222221 1246679999999999999998763
No 216
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.47 E-value=5.9e-13 Score=114.20 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|.+|||||||++.+++.... ..+..|+.+.....+.+++ ..+.++||+|...... .....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCC
Confidence 458999999999999999999876533 4445555444444555655 4577899999532111 11234577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|..........+..++.. +.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------i~-------- 126 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTE--------------------------------------------IL-------- 126 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHH--------------------------------------------HH--------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHH--------------------------------------------HH--------
Confidence 99999999987543211111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----------------hhHHHHhc---CCCeEEEecccccc-HHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------------DDVDKLAR---QPNSVVISCNLKLN-LDR 278 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----------------~~~~~l~~---~~~~v~iSa~~~~~-i~~ 278 (317)
......|+++|.||+|+... ++...+.. ....+.+||+++.| +++
T Consensus 127 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 127 --------------DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp --------------HHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred --------------HhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 00124799999999999642 12222221 22578899999998 999
Q ss_pred HHHHHHHHhC
Q 021103 279 LLARMWEEMG 288 (317)
Q Consensus 279 l~~~i~~~l~ 288 (317)
+.+.+.+.+.
T Consensus 193 lf~~l~~~~~ 202 (214)
T 3q3j_B 193 IFRTASMLCL 202 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988763
No 217
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2.9e-13 Score=113.63 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC--CeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~--g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-.+|+|+|++|+|||||+|.+++........|..+.+.....+.++ +..+.++|+||.... .......++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHHcc
Confidence 3589999999999999999999876432222322333333445554 456889999984211 1123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. +.
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 122 (191)
T 3dz8_A 96 AMGFILMYDITNEES-FNAVQDWATQ--------------------------------------------IK-------- 122 (191)
T ss_dssp CCEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865321 1111111111 10
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 123 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 123 -----------TY--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 0125799999999998643 22222222 23578899999999999999998765
No 218
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.47 E-value=1.2e-13 Score=116.89 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccce-eeeeeEEEEECC----eeEEEecCCCccccccCCchhHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTT-LTCIPGIIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT-~~~~~G~i~~~g----~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
..+|+|+|++|+|||||+|.+++.... ..+++.|+ .+.....+.+++ ..+.++||||.... ......
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~ 92 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-------KEQISQ 92 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-------HHHHST
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-------HHHHHH
Confidence 358999999999999999999987322 34555555 366777888875 36889999996321 112223
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..+|.+++++|...... ...+..++..+ .
T Consensus 93 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~---- 123 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSMES-FESCKAWFELL--------------------------------------------K---- 123 (208)
T ss_dssp TCCCCCEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------H----
T ss_pred HHhhCcEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----
Confidence 4677999999999865432 11222222111 0
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC-h-----hhHHHHhc--CCCeEEEeccc-cccHHHHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-I-----DDVDKLAR--QPNSVVISCNL-KLNLDRLLARMWEE 286 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~-----~~~~~l~~--~~~~v~iSa~~-~~~i~~l~~~i~~~ 286 (317)
..........|+++|+||+|+.. . ++...+.+ ....+.+||++ +.|++++.+.|.+.
T Consensus 124 --------------~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 124 --------------SARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp --------------HHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred --------------HhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 00000002579999999999976 2 22333322 23578899999 99999999998775
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
+
T Consensus 190 ~ 190 (208)
T 2yc2_C 190 F 190 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.47 E-value=2.9e-13 Score=113.12 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=86.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccc-eeeeeeEEEEE-----CCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFT-TLTCIPGIIHY-----NDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~t-T~~~~~G~i~~-----~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
.+++|+|++|||||||+|.+++...+ .+.+..| +.+...-.+.+ ....+.++||+|....... ...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST-------HPH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT-------SHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh-------hHH
Confidence 47999999999999999999997433 2333222 22322222222 2346788999985321110 112
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..++.++++.|..........+..++.. +.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~--------------------------------------------~~---- 107 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEVDAMKPWLFN--------------------------------------------IK---- 107 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHHHTHHHHHHH--------------------------------------------HH----
T ss_pred HccCCcEEEEEEeCCcchhHHHHHHHHHHH--------------------------------------------HH----
Confidence 245678888887765432111122222211 00
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH--------HHHhcC--CC----eEEEeccccc-cHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV--------DKLARQ--PN----SVVISCNLKL-NLDRLL 280 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~--------~~l~~~--~~----~v~iSa~~~~-~i~~l~ 280 (317)
......|+++|.||+|+...... +.+.+. .. .+.+||+++. ++++|.
T Consensus 108 ------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 108 ------------------ARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp ------------------HHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred ------------------hhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 00114789999999999865332 122211 12 6789999996 999999
Q ss_pred HHHHHHhCe
Q 021103 281 ARMWEEMGL 289 (317)
Q Consensus 281 ~~i~~~l~~ 289 (317)
+.|.+.+..
T Consensus 170 ~~i~~~~~~ 178 (184)
T 2zej_A 170 KTIINESLN 178 (184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999887643
No 220
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-12 Score=111.41 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|.+|+|||||+|.++|... .+..++.++.+.....+.++|..+ .++||+|.... .. ......++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-----~~-~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NE-WLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-----HH-HHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-----hh-hHHHHHHhh
Confidence 4799999999999999999998654 356667677776677788888764 56899874321 00 011122455
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
++.++++.+...... .+.+..++.. +.
T Consensus 112 a~~~ilVydvt~~~s-f~~~~~~~~~--------------------------------------------l~-------- 138 (211)
T 2g3y_A 112 GDAYLIVYSITDRAS-FEKASELRIQ--------------------------------------------LR-------- 138 (211)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 788888887654321 1111111110 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh-c-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~-~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++...+. . ....+.+||++|.|++++.+.|.+.+
T Consensus 139 -----------~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 139 -----------RAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp -----------TSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------HHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 0124799999999999642 1111221 1 23578899999999999999998765
No 221
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.45 E-value=9.2e-13 Score=112.79 Aligned_cols=152 Identities=17% Similarity=0.124 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee-EEEEEC-C--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYN-D--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~-G~i~~~-g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+|+|++|||||||+|.|++.... ..+..|+-.... ..+... + ..+.++||||....... ....+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-------KDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-------CHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-------HHHHhh
Confidence 47999999999999999999976533 222222111111 122222 2 56889999996432111 112356
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... +.+..++..+ .
T Consensus 84 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~-----------------------------------------~---------- 111 (218)
T 4djt_A 84 GASGAILFFDVTSRITC-QNLARWVKEF-----------------------------------------Q---------- 111 (218)
T ss_dssp TCSEEEEEEETTCHHHH-HTHHHHHHHH-----------------------------------------H----------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHHHHH-----------------------------------------H----------
Confidence 79999999998754221 1111111110 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
... ....|+++|+||+|+..... ...+.. ....+.+||++|.|++++.+.|.+.+.
T Consensus 112 ------------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 112 ------------AVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ------------HHH--CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred ------------Hhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 000 12479999999999975422 222222 235889999999999999999988763
No 222
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.45 E-value=1.2e-12 Score=111.51 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++...+ ..+..|+.......+.+++ ..+.++||||...... .....++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-------HHHhhccCC
Confidence 58999999999999999999987543 3333343333444566665 4578899999532111 112245779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 101 d~~ilv~D~~~~ 112 (205)
T 1gwn_A 101 DAVLICFDISRP 112 (205)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998654
No 223
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.44 E-value=4e-12 Score=107.07 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|.+|+|||||+|.++|... .+++++.++.+.....+.++|..+ .++||+|...... . . . ...++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~-~--~-~--~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE-W--L-H--DHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C-T--T-G--GGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh-h--H-H--Hhhccc
Confidence 4799999999999999999998654 356677777777777888888754 5679987532110 0 1 1 112345
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...... ...+..++.. +..
T Consensus 81 ~~~~i~v~dv~~~~s-~~~~~~~~~~-----------------------------------------l~~---------- 108 (192)
T 2cjw_A 81 GDAYLIVYSITDRAS-FEKASELRIQ-----------------------------------------LRR---------- 108 (192)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH-----------------------------------------HHH----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH-----------------------------------------HHH----------
Confidence 788888877654321 1111111110 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh-cC-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-RQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~-~~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+. .. ...+.+||++|.|++++.+.+.+.+
T Consensus 109 ------------~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 109 ------------AR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ------------HT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------hh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 00 01247899999999986421 111221 12 3567899999999999999987765
No 224
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.44 E-value=3.2e-14 Score=119.00 Aligned_cols=53 Identities=8% Similarity=-0.098 Sum_probs=43.2
Q ss_pred ccccCCcccccceeeeee---------E-----eeecC--CCCCCCHHHHHHHHHHhcccC-cEEEecCC
Q 021103 170 LNKRPPQIYFKKKKTGGI---------S-----FNSTL--PLTHVDEKLCYQILHEYKIHN-AEVLFRED 222 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~i---------a-----lilDE--Pt~~LD~~~~~~~l~~l~~~~-~~i~~shd 222 (317)
.++++..||+||+||+.+ + +++|| ||++||+.....+.+.+...+ ++|+++|.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 466788999999999643 2 79999 999999998888888887655 48888873
No 225
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.44 E-value=1.8e-14 Score=123.17 Aligned_cols=30 Identities=30% Similarity=0.230 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+..|++++|+||||||||||+|+|+|...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 566799999999999999999999999975
No 226
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.44 E-value=1.9e-14 Score=124.28 Aligned_cols=128 Identities=13% Similarity=-0.061 Sum_probs=66.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+.++|+||||||||||+++|+|.. | |.+.+ |.++.-... ++. ..+.++.+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-------------G~i~~-g~~~~~~~~~~~~----~~~i~~~~ 74 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-------------NYFYF-SVSCTTRKKREKE----KEGVDYYF 74 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS-T-------------TTEEE-CCCEECSCCCSSC----CBTTTBEE
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-------------CcEEE-eecccCCCCCccc----ccCCeEEE
Confidence 5778888889999999999999999999999976 3 34455 444321100 011 11112111
Q ss_pred HHHhhh----ccCcEEEEEe-cCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeee-----E---------eee
Q 021103 132 QVIAVS----KSSDIVLMVL-DASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGI-----S---------FNS 191 (317)
Q Consensus 132 ~~~~~~----~~~d~i~~v~-~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~i-----a---------lil 191 (317)
+....+ ...+++.+.. ...........+.+.++.... .++ ..|||||+||+.+ + +++
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 75 IDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp CCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred CCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 111111 1223333221 110000112345566665443 222 5789999999988 4 467
Q ss_pred cCCCCCCCHHH
Q 021103 192 TLPLTHVDEKL 202 (317)
Q Consensus 192 DEPt~~LD~~~ 202 (317)
||||+++|.+.
T Consensus 152 de~~~~~d~~~ 162 (218)
T 1z6g_A 152 LSRLLTRNTEN 162 (218)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHhcCCCC
Confidence 88999888644
No 227
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.43 E-value=5e-13 Score=133.86 Aligned_cols=88 Identities=26% Similarity=0.407 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccc--------------eeeeeeE-----------------------
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFT--------------TLTCIPG----------------------- 102 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~t--------------T~~~~~G----------------------- 102 (317)
.+.+|+|+|.+|+|||||+|+|+|... +++..|+| |++...|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 356899999999999999999999874 67788888 4432111
Q ss_pred ----------------EEEECC----eeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 103 ----------------IIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 103 ----------------~i~~~g----~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.+.+.. ..+.++||||+..... ........++.+|++++++++...
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc
Confidence 111111 3588999999865321 112334456789999999997643
No 228
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.42 E-value=1.3e-12 Score=118.92 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|.+|+|||||++.+++... ...++.||.+.....+.+++..+. ++||||..... ......+..+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhccCC
Confidence 5799999999999999999986543 456788888888888888887655 89999964321 1122345779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 228 d~~i~v~d~~~~ 239 (332)
T 2wkq_A 228 DVFLICFSLVSP 239 (332)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999998654
No 229
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.42 E-value=4.7e-12 Score=119.36 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEEC-----------------C------eeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-----------------D------TKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~~-----------------g------~~i~~~d~ 116 (317)
.+++++|..|+|||||++.|+|.... ....++.|.+.......+. | ..+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 47999999999999999999987532 2224677776644333331 1 57899999
Q ss_pred CCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCC
Q 021103 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLT 196 (317)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~ 196 (317)
||..+ +.......+..+|.+++++|+.......+. .+.+.
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~-------------------------------- 130 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLM-------------------------------- 130 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHH--------------------------------
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhH-HHHHH--------------------------------
Confidence 99532 123344556678999999998643201110 11110
Q ss_pred CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHH---h-----cCCC
Q 021103 197 HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKL---A-----RQPN 264 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l---~-----~~~~ 264 (317)
++..+ ...|+++|+||+|+...++. +++ . ...+
T Consensus 131 ---------~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 175 (410)
T 1kk1_A 131 ---------ALQII--------------------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 175 (410)
T ss_dssp ---------HHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred ---------HHHHc--------------------------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence 00000 12578999999999875431 222 1 1346
Q ss_pred eEEEeccccccHHHHHHHHHHHhC
Q 021103 265 SVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 265 ~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
++++||+++.|++.|++.|.+.+.
T Consensus 176 ~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 176 IIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988654
No 230
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.41 E-value=9.8e-13 Score=126.61 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-------------------------------CCCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------------EAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-------------------------------~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||++.|++... .....+|+|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 5799999999999999999976521 123346888888888888888899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+ +.......+..+|.+++++|+...
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999743 123445567889999999998653
No 231
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.41 E-value=8.4e-13 Score=119.73 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=35.4
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc----C-CCe---EEEeccc---cccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR----Q-PNS---VVISCNL---KLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~----~-~~~---v~iSa~~---~~~i~~l~~~i~~~l~~ 289 (317)
..|+++|+||+|+..... .+.+.. + .+. .++|+.+ +.|++++.+.+.+.++.
T Consensus 198 ~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 198 GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 479999999999985433 333322 1 233 4456666 78999999999888753
No 232
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.39 E-value=1.8e-13 Score=125.94 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=37.5
Q ss_pred eeeeEEEecccCCChhhHH----HHh------c------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDVD----KLA------R------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~~----~l~------~------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+....... .+. . .+.++++||++|.|++.|.+.|.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5889999999998643221 221 1 245788999999999999999988653
No 233
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.39 E-value=3.6e-12 Score=118.45 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
.++++|.+|+|||||+++|+ ..++|.+.....+.+++..+.++||||..+. .......+..+|.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT-------LKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTC-------HHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHH-------HHHHHHHHHHCCEE
Confidence 89999999999999999998 4567777776667777888999999997431 23344556789999
Q ss_pred EEEec
Q 021103 144 LMVLD 148 (317)
Q Consensus 144 ~~v~~ 148 (317)
++++|
T Consensus 88 ilVvd 92 (370)
T 2elf_A 88 VLCIP 92 (370)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99998
No 234
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.38 E-value=5e-12 Score=119.02 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC-----------------CccccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA-----------------ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v-----------------~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
..+++++|.+|+|||||++.|++..... ...++.|.+.....+...+..+.++||||..+.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH--
Confidence 3579999999999999999999841100 014577777755555666788999999997531
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|.+++++|+...
T Consensus 89 -----~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 89 -----IKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp -----HHHHHHHHTTCSSEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 23344556789999999998653
No 235
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.08 E-value=3.5e-14 Score=120.58 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|||||||++.+++... ...+..|+.+.....+.+++.. +.++||||..... ......+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 46899999999999999999986543 3456667766666666776655 4488999953211 111223567
Q ss_pred CcEEEEEecCCC
Q 021103 140 SDIVLMVLDASK 151 (317)
Q Consensus 140 ~d~i~~v~~~~~ 151 (317)
+|.+++++|...
T Consensus 102 ~d~iilv~D~~~ 113 (204)
T 3th5_A 102 TDVFLICFSLVS 113 (204)
Confidence 888988888654
No 236
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=9.2e-12 Score=117.32 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEE---------------C--C------eeEEEec
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHY---------------N--D------TKIQLLD 115 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~---------------~--g------~~i~~~d 115 (317)
..+++++|..|+|||||++.|+|.... ....+|.|.+.......+ . | ..+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 458999999999999999999987532 122456677654333222 1 1 5688999
Q ss_pred CCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCC
Q 021103 116 LPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPL 195 (317)
Q Consensus 116 ~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt 195 (317)
|||..+ +.......+..+|.+++++|+.......+. .+.+.
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~------------------------------- 128 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQT-KEHLM------------------------------- 128 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHH-HHHHH-------------------------------
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchh-HHHHH-------------------------------
Confidence 999532 112334445678999999998653211111 01110
Q ss_pred CCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh----HHH---Hh-c----CC
Q 021103 196 THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDK---LA-R----QP 263 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~----~~~---l~-~----~~ 263 (317)
++..+ ...|+++|+||+|+...++ .++ +. . ..
T Consensus 129 ----------~~~~l--------------------------~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (408)
T 1s0u_A 129 ----------ALEIL--------------------------GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENA 172 (408)
T ss_dssp ----------HHHHT--------------------------TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTC
T ss_pred ----------HHHHc--------------------------CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00000 1257899999999986432 222 21 1 34
Q ss_pred CeEEEeccccccHHHHHHHHHHHhC
Q 021103 264 NSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 264 ~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.++++||++|.|+++|.+.|.+.+.
T Consensus 173 ~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 173 PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6899999999999999999988654
No 237
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.38 E-value=1.7e-13 Score=132.71 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
..+|+++|.+|+|||||++.|++........|++|.+.....+.+ ++..+.++||||...... .....+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-------~~~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-------MRARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-------SBBSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-------HHHHHHccC
Confidence 458999999999999999999987765567889999987777776 567899999999532111 111234668
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++++......+ . .+.+. .+
T Consensus 77 D~vILVVDa~dg~~~q-t-~e~l~--------------------------------------------~~---------- 100 (537)
T 3izy_P 77 DIVILVVAADDGVMKQ-T-VESIQ--------------------------------------------HA---------- 100 (537)
T ss_dssp SSCEEECBSSSCCCHH-H-HHHHH--------------------------------------------HH----------
T ss_pred CEEEEEEECCCCccHH-H-HHHHH--------------------------------------------HH----------
Confidence 9999999876532111 0 01110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh------hHHHH----hcC---CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID------DVDKL----ARQ---PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~------~~~~l----~~~---~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+.... ++... ..+ ..++++||++|.|+++|.+.|...+
T Consensus 101 ------------~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 101 ------------K--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ------------H--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ------------H--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0 1146899999999997421 11111 111 2477899999999999999998876
Q ss_pred Ce
Q 021103 288 GL 289 (317)
Q Consensus 288 ~~ 289 (317)
..
T Consensus 167 ~~ 168 (537)
T 3izy_P 167 EM 168 (537)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 238
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.38 E-value=6.9e-12 Score=111.08 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh--cc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS--KS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~--~~ 139 (317)
.+|+|+|.+|+|||||+|+|+|... .+++++++|.......+.++|..+.++||||+.+...............+ ..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~ 116 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRT 116 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCC
Confidence 4799999999999999999999875 57889999999999999999999999999998653322211111111111 25
Q ss_pred CcEEEEEecC
Q 021103 140 SDIVLMVLDA 149 (317)
Q Consensus 140 ~d~i~~v~~~ 149 (317)
+|+++++.+.
T Consensus 117 ~~~il~V~~~ 126 (262)
T 3def_A 117 IDVLLYVDRL 126 (262)
T ss_dssp ECEEEEEEES
T ss_pred CCEEEEEEcC
Confidence 7888888654
No 239
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=121.54 Aligned_cols=80 Identities=6% Similarity=0.084 Sum_probs=39.8
Q ss_pred eeeeEeeecCCC-CCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---
Q 021103 184 TGGISFNSTLPL-THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--- 259 (317)
Q Consensus 184 r~~ialilDEPt-~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l--- 259 (317)
++.+.+++|||| .+||+... .+++.+. ...|+|+|+||+|+....++..+
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~lk~L~-------------------------~~v~iIlVinK~Dll~~~ev~~~k~~ 191 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EFMKRLH-------------------------EKVNIIPLIAKADTLTPEECQQFKKQ 191 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HHHHHHT-------------------------TTSEEEEEEESTTSSCHHHHHHHHHH
T ss_pred CeeEEEEEecCcccCCCHHHH-HHHHHHh-------------------------ccCcEEEEEEcccCccHHHHHHHHHH
Confidence 445569999999 68998652 3444332 14689999999999876544321
Q ss_pred -----h-cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 260 -----A-RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 260 -----~-~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ....++.+|+.++.+++++...+.+.++.
T Consensus 192 i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 192 IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHTCCCCCCC-----------------CCE
T ss_pred HHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 1 12456778999999999887777776654
No 240
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.36 E-value=1.6e-11 Score=103.46 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE--EC---CeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH--YN---DTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~--~~---g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
..+|+|+|.+|||||||++.+.+...+. +..+.+...+.+. +. ...+.++||+|....... .......
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP----TFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT----TCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh----hhhcccc
Confidence 4689999999999999999999865432 2222222222222 22 257889999995331111 0000234
Q ss_pred hccCcEEEEEecCCCc
Q 021103 137 SKSSDIVLMVLDASKS 152 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~ 152 (317)
++.+|.+++++|....
T Consensus 93 ~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHTCSEEEEEEETTSC
T ss_pred cccCCEEEEEEECCCc
Confidence 5779999999998654
No 241
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.35 E-value=1.2e-11 Score=109.86 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh--hhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA--VSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~--~~~~ 139 (317)
.+++++|.+|+|||||+|.|+|... .+++++++|.++....+..++..+.++||||+.+.............. ....
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~ 119 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT 119 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCC
Confidence 4799999999999999999999874 578899999999888888899999999999986532211111111111 1236
Q ss_pred CcEEEEEecC
Q 021103 140 SDIVLMVLDA 149 (317)
Q Consensus 140 ~d~i~~v~~~ 149 (317)
+|+++++++.
T Consensus 120 ~d~il~v~~~ 129 (270)
T 1h65_A 120 IDVLLYVDRL 129 (270)
T ss_dssp ECEEEEEEES
T ss_pred CCEEEEEEeC
Confidence 8889888654
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.34 E-value=3.1e-13 Score=123.77 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=78.5
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
+++.+..|+.++|+|+||||||||+|+|+|...+ .+|.|.++|... +..+.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~~e--~~~~~---------------- 214 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDTEE--IVFKH---------------- 214 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESSCC--CCCSS----------------
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCeec--ccccc----------------
Confidence 3455567899999999999999999999999987 789998876431 00000
Q ss_pred hhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH
Q 021103 135 AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ 205 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~ 205 (317)
..+.+-++.. +|++||.+++ +++|||++. ...+
T Consensus 215 ----~~~~i~~~~g------------------------------gg~~~r~~la~aL~~~p~ilildE~~~~----e~~~ 256 (330)
T 2pt7_A 215 ----HKNYTQLFFG------------------------------GNITSADCLKSCLRMRPDRIILGELRSS----EAYD 256 (330)
T ss_dssp ----CSSEEEEECB------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCST----HHHH
T ss_pred ----chhEEEEEeC------------------------------CChhHHHHHHHHhhhCCCEEEEcCCChH----HHHH
Confidence 0011111110 5677777665 889999982 3456
Q ss_pred HHHHhcccC-cEEEecCCCChhhHHHHHh
Q 021103 206 ILHEYKIHN-AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 206 ~l~~l~~~~-~~i~~shd~~~~~~~~~~~ 233 (317)
+++.+...+ ++++++|+....+.++++.
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 777776555 7999999988888887753
No 243
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.34 E-value=2.4e-13 Score=133.68 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-------------------------------CCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------------AASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-------------------------------v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+|+|+|.+|+|||||++.|++.... ....+|+|++...+.+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 46999999999999999999753211 11156889999888888888899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+... .....+..+|.+++++|+..
T Consensus 258 ~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEEEE-------ECCC-------CCSEEEEEE
T ss_pred EEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCC
Confidence 9999999753211 12233466899999888753
No 244
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.33 E-value=2.2e-12 Score=127.36 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
.+||+|+||||||||+++|+|...|. .+|.|.++|.++.....+.... .....++.+|...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~----------~sG~vt~~g~~i~~~~~~~~~~-~~~~i~~v~Q~~~-------- 107 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPR----------GSGIVTRCPLVLKLKKLVNEDK-WRGKVSYQDYEIE-------- 107 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEECSSSSC-CEEEESCC---CC--------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCC----------CCCeEEEcCEEEEEecCCcccc-ceeEEeeeccccc--------
Confidence 59999999999999999999997551 4899999999876655332111 1111122121100
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeee--E-------eeecCC------CCCCCHHHH---HH
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGI--S-------FNSTLP------LTHVDEKLC---YQ 205 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~i--a-------lilDEP------t~~LD~~~~---~~ 205 (317)
........+.+......++. ....+| .+.+.+ + +++||| |++||+... .+
T Consensus 108 -----l~~~~tv~e~i~~~~~~~~~----~~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~ 175 (608)
T 3szr_A 108 -----ISDASEVEKEINKAQNAIAG----EGMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT 175 (608)
T ss_dssp -----CCCHHHHHTTHHHHHHHHHC----SSSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHhcC----Cccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHH
Confidence 00111111112222222211 001111 122222 1 789999 999998764 45
Q ss_pred HHHHhc-cc-C-cEEEecCCCChh-----hHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 206 ILHEYK-IH-N-AEVLFREDATVD-----DLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 206 ~l~~l~-~~-~-~~i~~shd~~~~-----~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
++..+. .. + .+++++|+.+.. ++++.+. ....++|+|+||+|++..+.
T Consensus 176 li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~--~~g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 176 LIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD--PEGDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp HHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC--SSCCSEEEEEECGGGSSSSS
T ss_pred HHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh--hcCCceEEEecchhhcCccc
Confidence 555542 22 3 678889985532 3444443 23578999999999986543
No 245
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.33 E-value=1.7e-12 Score=126.57 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC------CCccccceeeeeeEEEEEC----CeeEEEecCCCccccccCCchhHHH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE------AASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~------v~~~p~tT~~~~~G~i~~~----g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+|+|+|.+|||||||+|.+++.... ++...+++..+..|.+.++ +..+.++|+||...... .
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-------~ 114 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-------S 114 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-------T
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-------H
Confidence 58999999999999999999987632 2222222222222223332 46789999999422111 1
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
....++.+|++++++|....... ..+...+..
T Consensus 115 ~~~~l~~~d~ii~V~D~s~~~~~-~~~~~~l~~----------------------------------------------- 146 (535)
T 3dpu_A 115 HQFFMTRSSVYMLLLDSRTDSNK-HYWLRHIEK----------------------------------------------- 146 (535)
T ss_dssp CHHHHHSSEEEEEEECGGGGGGH-HHHHHHHHH-----------------------------------------------
T ss_pred HHHHccCCcEEEEEEeCCCchhH-HHHHHHHHH-----------------------------------------------
Confidence 11235679999999987543211 111111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....|+++|.||+|+..... ...... ...++.+||++|.|+++|.+.|.+
T Consensus 147 ----------------------~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 147 ----------------------YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp ----------------------HSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred ----------------------hCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 011479999999999975322 222222 234899999999999999999998
Q ss_pred HhCe
Q 021103 286 EMGL 289 (317)
Q Consensus 286 ~l~~ 289 (317)
.+..
T Consensus 205 ~~~~ 208 (535)
T 3dpu_A 205 AVLH 208 (535)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8754
No 246
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.32 E-value=2.3e-11 Score=115.48 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-----------CCccccc----------------------eeeeeeEEEEECCe
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-----------AASYEFT----------------------TLTCIPGIIHYNDT 109 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-----------v~~~p~t----------------------T~~~~~G~i~~~g~ 109 (317)
.+++++|.+|+|||||++.|++.... .+.+++| |.+.....+...+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 47999999999999999999865421 2223444 44433334455678
Q ss_pred eEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 110 KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 110 ~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.+.++||||..+. .......+..+|.+++++|+...
T Consensus 105 ~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCC
Confidence 8999999996431 12334456789999999998654
No 247
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.32 E-value=2.4e-12 Score=119.05 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=35.1
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc--------CCCeEEEeccccccHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~--------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
..|+++|+||+|+..... .+.+.. +..++++||+++.|+++|.+.+.+
T Consensus 197 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 478999999999985432 222111 224667999999999999998876
No 248
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.30 E-value=2.4e-12 Score=118.42 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred cccCCcccccceeeee------eE---------eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCChhhHHH
Q 021103 171 NKRPPQIYFKKKKTGG------IS---------FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~------ia---------lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~~~~~~ 230 (317)
++++..|||||+||++ ++ +++||||++||+.....+++.+ ... .++|++|||..+.+.||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 4578899999999653 32 8999999999999866655544 333 38999999976655443
No 249
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.30 E-value=3.3e-11 Score=118.15 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC---------Cc------cccceeeeeeEEEEEC---C--eeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA---------AS------YEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v---------~~------~p~tT~~~~~G~i~~~---g--~~i~~~d~~g~~~~ 122 (317)
..++|+|..|+|||||++.|+.....+ .+ ..|.|.......+.|. | ..+.++||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 479999999999999999997532111 11 2456666655666664 2 56889999997542
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
. ......+..+|.+++++|+......+. ...+.
T Consensus 87 ~-------~ev~r~l~~aD~aILVVDa~~gv~~qt-~~~~~--------------------------------------- 119 (600)
T 2ywe_A 87 S-------YEVSRALAACEGALLLIDASQGIEAQT-VANFW--------------------------------------- 119 (600)
T ss_dssp H-------HHHHHHHHTCSEEEEEEETTTBCCHHH-HHHHH---------------------------------------
T ss_pred H-------HHHHHHHHhCCEEEEEEECCCCccHHH-HHHHH---------------------------------------
Confidence 1 233445678999999999865432111 10000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--h-HHHHhcC-----CCeEEEeccccc
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--D-VDKLARQ-----PNSVVISCNLKL 274 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~-~~~l~~~-----~~~v~iSa~~~~ 274 (317)
.. . ....|+++|+||+|+.... . .+.+.+. ..++++||++|.
T Consensus 120 -----~a-----------------------~--~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 120 -----KA-----------------------V--EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169 (600)
T ss_dssp -----HH-----------------------H--HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTB
T ss_pred -----HH-----------------------H--HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCC
Confidence 00 0 0147899999999997532 1 2233322 137999999999
Q ss_pred cHHHHHHHHHHHhCe
Q 021103 275 NLDRLLARMWEEMGL 289 (317)
Q Consensus 275 ~i~~l~~~i~~~l~~ 289 (317)
|+++|++.|.+.++.
T Consensus 170 GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 170 GIEEILEAIVNRIPP 184 (600)
T ss_dssp SHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988753
No 250
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.30 E-value=5.2e-11 Score=111.76 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC----------------CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE----------------AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~----------------v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 126 (317)
.+++++|.+|+|||||++.|++.... .....+.|.+...-.+...+..+.++||||..+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 47999999999999999999985210 011345666654434445668899999999643
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCc
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.......+..+|.+++++|+...
T Consensus 79 --f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 79 --YVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp --HHHHHHHTSSCCSEEEEEEETTTC
T ss_pred --HHHHHHhhHhhCCEEEEEEECCCC
Confidence 112344456789999999998653
No 251
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.29 E-value=1.6e-11 Score=113.53 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=38.0
Q ss_pred eeeeEEEecccCCChhhH----HHHh-----------c-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDV----DKLA-----------R-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~----~~l~-----------~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+...... ..+. . ..+++++||++|.|+++|.+.|.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999754322 1121 1 256899999999999999999988764
No 252
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.29 E-value=9e-11 Score=100.98 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=90.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|+|||||++.++...-+....|-...+...-.+.+++. .+.++||+|-.... . -....++.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~---l~~~~~~~a 86 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----S---LIPSYIRDS 86 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG----G---GHHHHHTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----h---HHHHHhccc
Confidence 47999999999999999998865432111121122333334556664 45789999843211 1 112345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... .+.+..++.. +.
T Consensus 87 ~~~ilv~di~~~~S-f~~i~~~~~~--------------------------------------------i~--------- 112 (216)
T 4dkx_A 87 AAAVVVYDITNVNS-FQQTTKWIDD--------------------------------------------VR--------- 112 (216)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred cEEEEEeecchhHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999988765322 1112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. . ....|+++|.||+|+... ++.+.+.+ ....+.+||++|.|++++.+.|.+.+..
T Consensus 113 ---------~~-~--~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 113 ---------TE-R--GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ---------HH-H--TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred ---------Hh-c--CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 00 0 124789999999998643 23333332 2346779999999999999999887643
No 253
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.28 E-value=2.5e-11 Score=119.17 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC---------C------ccccceeeeeeEEEEEC---C--eeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA---------A------SYEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v---------~------~~p~tT~~~~~G~i~~~---g--~~i~~~d~~g~~~~ 122 (317)
..++|+|..|+|||||++.|+.....+ . ...|.|.......+.|. | ..+.++||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 379999999999999999997632111 1 12456666655666664 2 57889999997442
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
.......+..+|.+++++|+......... ..+
T Consensus 85 -------~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~---------------------------------------- 116 (599)
T 3cb4_D 85 -------SYEVSRSLAACEGALLVVDAGQGVEAQTL-ANC---------------------------------------- 116 (599)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHH----------------------------------------
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHH----------------------------------------
Confidence 12334456779999999998653221110 000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHh---cC--CCeEEEeccccc
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA---RQ--PNSVVISCNLKL 274 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~---~~--~~~v~iSa~~~~ 274 (317)
... . ....|+++|+||+|+.... ..+.+. .. ..++++||++|.
T Consensus 117 ----~~~----------------------~---~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 117 ----YTA----------------------M---EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGV 167 (599)
T ss_dssp ----HHH----------------------H---HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCT
T ss_pred ----HHH----------------------H---HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCC
Confidence 000 0 0147999999999998532 122232 22 248999999999
Q ss_pred cHHHHHHHHHHHhC
Q 021103 275 NLDRLLARMWEEMG 288 (317)
Q Consensus 275 ~i~~l~~~i~~~l~ 288 (317)
|+++|++.|.+.++
T Consensus 168 GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 168 GVQDVLERLVRDIP 181 (599)
T ss_dssp THHHHHHHHHHHSC
T ss_pred CchhHHHHHhhcCC
Confidence 99999999998875
No 254
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.28 E-value=1.3e-12 Score=120.35 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=88.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
++ +.+..|++++|+|+||||||||+++|+|...+ +.|.+.+.|.+.. . .....+....
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~~~~--------e-v~~~i~~~~~- 121 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGERGR--------E-VNEFLALLPQ- 121 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHH--------H-HHHHHTTSCH-
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEecccHH--------H-HHHHHHhhhh-
Confidence 44 77788999999999999999999999999877 6787776553210 0 0000000000
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc------------cccccCCcccccceeeeeeEeeecCC-CCCCCH
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------------RLNKRPPQIYFKKKKTGGISFNSTLP-LTHVDE 200 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l------------~~~~~~~~LS~g~~qr~~ialilDEP-t~~LD~ 200 (317)
..+. ..+.++.....+.. .++...+..+.+ .+-..+..||+|+ |+++++ +.+.| |+++|+
T Consensus 122 -~~~~--~~v~~~~~~~~~~~--~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp 194 (347)
T 2obl_A 122 -STLS--KCVLVVTTSDRPAL--ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDVRGGFPP 194 (347)
T ss_dssp -HHHT--TEEEEEECTTSCHH--HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCCBTTBCH
T ss_pred -hhhh--ceEEEEECCCCCHH--HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCcccCCCH
Confidence 0111 22333322211111 112111111111 1125678999999 899998 35555 589999
Q ss_pred HHHHHHHHHh---cc--cC------cEEEecCCCChhhHHHHHh
Q 021103 201 KLCYQILHEY---KI--HN------AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 201 ~~~~~~l~~l---~~--~~------~~i~~shd~~~~~~~~~~~ 233 (317)
.....+.+.+ .. .+ +++++|||.+ +.++|.+.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~ 237 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVR 237 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheE
Confidence 9866655554 32 24 6789999987 77787754
No 255
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.25 E-value=4.1e-12 Score=115.36 Aligned_cols=112 Identities=12% Similarity=-0.034 Sum_probs=68.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..|.++||+|+||||||||+++|+|...+ ..|. ..+.++...++... ......+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~-----------~~G~-----~~v~~v~qd~~~~~--------~t~~e~~~~ 143 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR-----------WDHH-----PRVDLVTTDGFLYP--------NAELQRRNL 143 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT-----------STTC-----CCEEEEEGGGGBCC--------HHHHHHTTC
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc-----------cCCC-----CeEEEEecCccCCc--------ccHHHHHHH
Confidence 34889999999999999999999999876 2221 12222221111110 011111100
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.. ........+.+.+.+.|+.++- ..+.+++.||+|++||+.++ +++|||+..+|.
T Consensus 144 ~~-----~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 144 MH-----RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TT-----CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HH-----hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 00 0011112234456677777664 33467889999999999876 899999998874
No 256
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.25 E-value=2.4e-11 Score=115.34 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCC-------------------------------ccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~-------------------------------~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||++.|++....+. ..+++|.+.....+.+.+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 4799999999999999999986421110 135778887777777788899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+. .......+..+|.+++++|+..
T Consensus 87 ~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 87 TIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST
T ss_pred EEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC
Confidence 99999996431 1234456678999999999875
No 257
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.24 E-value=1.4e-12 Score=133.16 Aligned_cols=60 Identities=8% Similarity=-0.084 Sum_probs=44.2
Q ss_pred CCcccccceeeeeeE--------eeecCCCCCCCHHHHH----HHHHHhcc--cCcEEEecCCCChhhHHHHHh
Q 021103 174 PPQIYFKKKKTGGIS--------FNSTLPLTHVDEKLCY----QILHEYKI--HNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia--------lilDEPt~~LD~~~~~----~~l~~l~~--~~~~i~~shd~~~~~~~~~~~ 233 (317)
...+|+|++++..++ +++|||++|+|+.... .+++.+.. +.+++++||+.++.++++...
T Consensus 733 ~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp -CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcc
Confidence 355667777766554 8999999999997633 45566542 348999999998888888764
No 258
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=1e-11 Score=124.25 Aligned_cols=48 Identities=13% Similarity=-0.037 Sum_probs=36.4
Q ss_pred eeeeeEEEecccCCChhhH-HHHh---------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDV-DKLA---------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~-~~l~---------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
..|+++|+||+|+...+.. ..+. .+..++++||.+|.|+++|.+.|.+
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4799999999999865431 1111 1235788999999999999999976
No 259
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.24 E-value=1.9e-12 Score=124.29 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++++|.+|+|||||++.|.+.....+..+++|.+.....+.+++..+.++||||....... ....+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~-------~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM-------RARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS-------BCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH-------HHHHHhhCC
Confidence 3589999999999999999999865445556788887766666677888999999996432111 112346789
Q ss_pred EEEEEecCCC
Q 021103 142 IVLMVLDASK 151 (317)
Q Consensus 142 ~i~~v~~~~~ 151 (317)
.+++++++..
T Consensus 77 ~aILVVda~~ 86 (501)
T 1zo1_I 77 IVVLVVAADD 86 (501)
T ss_dssp SEEEEEETTT
T ss_pred EEEEEeeccc
Confidence 9999998754
No 260
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.24 E-value=1.6e-11 Score=113.78 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|+|++|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999964
No 261
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.23 E-value=9.6e-11 Score=114.26 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=58.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC---CCCccccceeeee--e---EEEE----------------------------
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCI--P---GIIH---------------------------- 105 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~---~v~~~p~tT~~~~--~---G~i~---------------------------- 105 (317)
-.+|+|+|.+|+|||||+|.|+|... ++++.|.||+... . |.+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 46899999999999999999999875 4788888866321 0 0010
Q ss_pred ---ECC---eeEEEecCCCccccccCCch----hHHHHHhhhccCcEEEEEecCCC
Q 021103 106 ---YND---TKIQLLDLPGIIEGASEGKG----RGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 106 ---~~g---~~i~~~d~~g~~~~~~~~~~----~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+.+ ..+.++||||+......... +.......+..+|++++++|+..
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 000 35889999998753221111 11223345677999999999864
No 262
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.23 E-value=1.1e-10 Score=116.52 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=62.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCC------------Cc------cccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEA------------AS------YEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v------------~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
...+.+++|+|++|+|||||+++|++...++ .+ ..+.|..+....+.+.+..+.++||||..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3457799999999999999999999654321 11 23556666677778888899999999964
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+. .......++.+|..++++|+..
T Consensus 86 ~f-------~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 86 DF-------VGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp GG-------HHHHHHHHHHCSEEEEEEETTT
T ss_pred ch-------HHHHHHHHhhcCcEEEEEcCCc
Confidence 31 1234445667888888888654
No 263
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.23 E-value=3.4e-11 Score=115.07 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC-------------------------Cc------cccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA-------------------------AS------YEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v-------------------------~~------~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||+|.|++....+ .+ ..|.|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 479999999999999999998642111 01 25778887777777778899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+ +.......+..+|.+++++|+..
T Consensus 88 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 88 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSH
T ss_pred EEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCc
Confidence 9999999532 22334456678999999999864
No 264
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.22 E-value=1.4e-10 Score=116.14 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc---cCCC---------CCc------cccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g---~~~~---------v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
.+++|+|.+|+|||||+|.|++ .... +.+ .+++|+....+.+.+++..+.++||||..+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 4799999999999999999984 3211 222 36788888888899999999999999985421
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
......++.+|.+++++|+...
T Consensus 90 ------~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 90 ------VEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTTB
T ss_pred ------HHHHHHHHHCCEEEEEECCCCC
Confidence 2344556779999999998654
No 265
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.21 E-value=9e-11 Score=98.17 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC---CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v---~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
..+++++|++|||||||+|.|++..... +..|.+|.+. .+..+.++||||........ .......+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~---~~~~~~~~~ 117 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKL---SDYLKTRAK 117 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCCH---HHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHHH---HHHHHhhcc
Confidence 4589999999999999999999876431 2233333322 46678899999975422111 111222334
Q ss_pred cCcEEEEEecCC
Q 021103 139 SSDIVLMVLDAS 150 (317)
Q Consensus 139 ~~d~i~~v~~~~ 150 (317)
.+|.+++++|..
T Consensus 118 ~~~~~i~v~d~~ 129 (193)
T 2ged_A 118 FVKGLIFMVDST 129 (193)
T ss_dssp GEEEEEEEEETT
T ss_pred cCCEEEEEEECC
Confidence 589999999986
No 266
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.21 E-value=1.1e-11 Score=127.04 Aligned_cols=45 Identities=7% Similarity=-0.164 Sum_probs=35.3
Q ss_pred eeecCCCCCCCHHHH----HHHHHHhcc--cCcEEEecCCCChhhHHHHHh
Q 021103 189 FNSTLPLTHVDEKLC----YQILHEYKI--HNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 189 lilDEPt~~LD~~~~----~~~l~~l~~--~~~~i~~shd~~~~~~~~~~~ 233 (317)
+++|||++|+|+... ..+++.+.. +.+++++||+.++.++++.+.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~ 795 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP 795 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc
Confidence 899999999998763 455666653 348999999988888887654
No 267
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.20 E-value=2.9e-10 Score=113.75 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc---cCCC---------CCc------cccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g---~~~~---------v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
.+++|+|.+|+|||||++.|+. .... +.+ ..+.|.......+.+.+..+.++||||..+.
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 90 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF-- 90 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch--
Confidence 4799999999999999999983 2211 111 4577888777888899999999999997431
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......++.+|.+++++|+...
T Consensus 91 -----~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 -----TIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 12344556789999999998654
No 268
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.19 E-value=3.6e-10 Score=109.62 Aligned_cols=83 Identities=25% Similarity=0.305 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC----------------CC------ccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE----------------AA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~----------------v~------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
.+++|+|.+|+|||||++.|++.... +. ...+.|.......+.+++..+.++||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 47999999999999999999864211 11 134556666566778889999999999974
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.. ......+..+|.+++++|+...
T Consensus 94 df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 94 DFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 321 2344566889999999998654
No 269
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.19 E-value=1.2e-12 Score=118.48 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+++...+|++++|+|+||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~d 137 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGD 137 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeec
Confidence 45666677999999999999999999999999877 67888876654
No 270
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.19 E-value=3.5e-12 Score=120.98 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=89.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe---eEEEecCCCccccccCCchhH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT---KIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~---~i~~~d~~g~~~~~~~~~~~~ 130 (317)
++ +.+..|++++|+|+||||||||+++|+|...+ ..|.+.+.|. ++..+ .. ...
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~r~~ev~~~-----~~---~~~--- 206 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGERGREVKDF-----IE---NIL--- 206 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHHHHH-----HH---TTT---
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEeceecHHHHHH-----HH---hhc---
Confidence 45 77888999999999999999999999999877 7898888764 21100 00 000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHH----H---HHHHHHccc---cccccCCcccccceeeeeeEeeecCC--CCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQI----L---TKELEAVGL---RLNKRPPQIYFKKKKTGGISFNSTLP--LTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~----~---~~~L~~~~l---~~~~~~~~LS~g~~qr~~ialilDEP--t~~L 198 (317)
....+ ...+.++.....+...... + .+++...+- .+-.....||+|+ ||+++| +.+| |++|
T Consensus 207 --~~~~l--~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~t~gl 279 (438)
T 2dpy_A 207 --GPDGR--ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPATKGY 279 (438)
T ss_dssp --HHHHH--HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCCSSSC
T ss_pred --ccccc--CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcccccC
Confidence 00001 1122333321111111111 1 111111111 1223467899999 999998 7777 8999
Q ss_pred CHHHHHHHHHHhc---c---c-C------cEEEecCCCChhhHHHHHh
Q 021103 199 DEKLCYQILHEYK---I---H-N------AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 199 D~~~~~~~l~~l~---~---~-~------~~i~~shd~~~~~~~~~~~ 233 (317)
|+.....+.+.+. . . + ++++++||.+ +.++|.+.
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~ 326 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSAR 326 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEE
Confidence 9988666555543 3 2 4 7889999987 67777653
No 271
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=6e-11 Score=109.91 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcc-c------cceee--eeeEEEEECCe--eEEEecCCCcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASY-E------FTTLT--CIPGIIHYNDT--KIQLLDLPGII 120 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~-p------~tT~~--~~~G~i~~~g~--~i~~~d~~g~~ 120 (317)
.|+|+|++|+|||||+|+|.+.......+ + ..|.. .....+..+|. .+.++||||+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 57999999999999999998875443322 1 12332 22222334454 57889999984
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.17 E-value=1.3e-11 Score=109.32 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=73.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
..+|..++|+||||||||||+++|+|...+ . +|.|.+.|.++.+ ..+.. .....|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i~~------~~~~~--~~~v~q----- 77 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEY------VFKHK--KSIVNQ----- 77 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSCCS------CCCCS--SSEEEE-----
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCccee------ecCCc--ceeeeH-----
Confidence 456899999999999999999999999876 5 7888876655421 11000 000000
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+.. ....-...+...|.. .| =.+++|||+ |++....+++......+++
T Consensus 78 -------~~~gl-~~~~l~~~la~aL~~-------~p------------~illlDEp~---D~~~~~~~l~~~~~g~~vl 127 (261)
T 2eyu_A 78 -------REVGE-DTKSFADALRAALRE-------DP------------DVIFVGEMR---DLETVETALRAAETGHLVF 127 (261)
T ss_dssp -------EEBTT-TBSCHHHHHHHHHHH-------CC------------SEEEESCCC---SHHHHHHHHHHHHTTCEEE
T ss_pred -------HHhCC-CHHHHHHHHHHHHhh-------CC------------CEEEeCCCC---CHHHHHHHHHHHccCCEEE
Confidence 00000 000001111111110 00 027899999 9988877777665445899
Q ss_pred EecCCCChhhHHHHH
Q 021103 218 LFREDATVDDLIDVI 232 (317)
Q Consensus 218 ~~shd~~~~~~~~~~ 232 (317)
+++|+.+....++++
T Consensus 128 ~t~H~~~~~~~~dri 142 (261)
T 2eyu_A 128 GTLHTNTAIDTIHRI 142 (261)
T ss_dssp EEECCSSHHHHHHHH
T ss_pred EEeCcchHHHHHHHH
Confidence 999998887777765
No 273
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=101.79 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=38.2
Q ss_pred eeeeeEEEecccCCChhhHH---HHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 238 YMKCVYVYNKIDVIGIDDVD---KLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~---~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
..|+++|.||+|+.....++ .+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999997643322 2322 24578899999999999999997764
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=6.1e-13 Score=129.34 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=85.8
Q ss_pred CCcEE-EEeCCcEEEEEcCCCCcHHHHHHH--HhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEV-TKFGHGRVALIGFPSVGKSTLLTL--LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~-~~~~g~~valiG~ngaGKSTLln~--L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++ .+..|+.++|+|+||||||||+++ ++|...+ .+|.++++|.+.. .-........++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~~~-----~~~~~~~~~~g~ 92 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEETP-----QDIIKNARSFGW 92 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSSCH-----HHHHHHHGGGTC
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeCCH-----HHHHHHHHHcCC
Confidence 35566 677899999999999999999999 6798876 6788888775410 000001122333
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeEeeecCCCCC-----CCHHH
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGISFNSTLPLTH-----VDEKL 202 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ialilDEPt~~-----LD~~~ 202 (317)
..|..... ..+.+. +...... ..++|+.+++ ..++.+..||+|+.||+ ++||||+. +|+..
T Consensus 93 ~~q~~~~~---~~l~~~-~~~~~~~----~~~~l~~~~l~~~~~~~~~~LS~g~~~~l----ilDe~t~~~~~~~lD~~~ 160 (525)
T 1tf7_A 93 DLAKLVDE---GKLFIL-DASPDPE----GQEVVGGFDLSALIERINYAIQKYRARRV----SIDSVTSVFQQYDASSVV 160 (525)
T ss_dssp CHHHHHHT---TSEEEE-ECCCCSS----CCSCCSSHHHHHHHHHHHHHHHHHTCSEE----EEECSTTTSTTTCCHHHH
T ss_pred ChHHhhcc---CcEEEE-ecCcccc----hhhhhcccCHHHHHHHHHHHHHHcCCCEE----EECCHHHHHHhcCCHHHH
Confidence 33332211 112111 1111000 0112222333 34556778999999975 56899874 57766
Q ss_pred HH---HHHHHhcccC-cEEEecCCCCh
Q 021103 203 CY---QILHEYKIHN-AEVLFREDATV 225 (317)
Q Consensus 203 ~~---~~l~~l~~~~-~~i~~shd~~~ 225 (317)
.. ++++.++..+ ++|+++|+...
T Consensus 161 ~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 161 RRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 44 4555555445 99999999543
No 275
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.14 E-value=2.7e-10 Score=111.84 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccc-cceeeeeeEEEEE------------------CCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE-FTTLTCIPGIIHY------------------NDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p-~tT~~~~~G~i~~------------------~g~~i~~~d~~g~~~~ 122 (317)
..+++|+|.+|+|||||++.|++.... ...| +.|.+...-.+.+ ....+.++||||....
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 358999999999999999999876421 1222 3333321111111 1124889999996432
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
... ....++.+|.+++++|+..
T Consensus 84 ~~~-------~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTL-------RKRGGALADLAILIVDINE 105 (594)
T ss_dssp TTS-------BCSSSBSCSEEEEEEETTT
T ss_pred HHH-------HHHHHhhCCEEEEEEECCC
Confidence 111 1123467899999999865
No 276
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.10 E-value=1.3e-10 Score=111.31 Aligned_cols=83 Identities=23% Similarity=0.212 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-------------------------CC------ccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------AA------SYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-------------------------v~------~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|..|+|||||++.|++.... +. ...+.|.+.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 57999999999999999999743211 11 134677777666777888999
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+. .......+..+|.+++++|+...
T Consensus 124 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 99999996431 12233445789999999998654
No 277
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.10 E-value=3.5e-12 Score=117.74 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+++...+|.+++|+|+||||||||++.|+|...+ ..|.|.+.|.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~D 194 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGD 194 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEeccc
Confidence 45666677999999999999999999999999876 67888776654
No 278
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.09 E-value=1e-09 Score=113.45 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC----------------CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~----------------~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 126 (317)
.+|+++|.+|+|||||++.|++... +.....|.|.+...-.+...+..+.++||||..+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF---- 372 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY---- 372 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH----
Confidence 4699999999999999999997521 01123566666544444456678999999996431
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCc
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|.+++++|+...
T Consensus 373 ---~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 373 ---VKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp ---HHHHHHTSCCCSEEEEEEETTTC
T ss_pred ---HHHHHHHHhhCCEEEEEEcCCcc
Confidence 22344456789999999998653
No 279
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=1.3e-10 Score=107.87 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc------CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~------~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
+..++++|.+|+|||||+|+|+|. ...++++||||++...+. + +..+.++||||+............+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 457999999999999999999997 345899999999987543 3 3347899999997543211111112222
Q ss_pred hh---ccCcEEEEEecC
Q 021103 136 VS---KSSDIVLMVLDA 149 (317)
Q Consensus 136 ~~---~~~d~i~~v~~~ 149 (317)
.+ ...+.+.++++.
T Consensus 239 ~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHSCSSCCCCEEEEECT
T ss_pred HHhcccccCceEEEEcC
Confidence 22 446666676654
No 280
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.07 E-value=4.6e-12 Score=110.61 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh--cc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLT--GT 85 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~--g~ 85 (317)
+..|+.++|+||||||||||+++|+ |.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999 55
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.04 E-value=3.9e-11 Score=108.25 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=30.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++++.+.+|++++|+||||||||||+++|+|..
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456778889999999999999999999999985
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=9.9e-11 Score=98.59 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
|++++|+|+||||||||+++|+|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 56899999999999999999999874
No 283
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.02 E-value=4.9e-09 Score=102.09 Aligned_cols=99 Identities=25% Similarity=0.299 Sum_probs=66.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCC-------------CCCc------cccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHS-------------EAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~-------------~v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
..+||||..++|||||.-+|+ |... .+.+ .-|.|.....-.+.|+|..+.++||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 379999999999999999885 2210 1122 23566666677889999999999999986
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHccc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~l 168 (317)
+.. ......++.+|..++++|+.... .+...+.+.+...++
T Consensus 112 DF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l 153 (548)
T 3vqt_A 112 DFS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT 153 (548)
T ss_dssp GCS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred HHH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC
Confidence 532 35566778899999999987543 234445555554443
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.01 E-value=3.9e-11 Score=102.32 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|.++||+|+||||||||+++|+|...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999999864
No 285
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.01 E-value=5.4e-09 Score=104.76 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc---CCC---------CCc------cccceeeeeeEEEEECC-------eeEEEecC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT---HSE---------AAS------YEFTTLTCIPGIIHYND-------TKIQLLDL 116 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~---~~~---------v~~------~p~tT~~~~~G~i~~~g-------~~i~~~d~ 116 (317)
-.+++|+|..|+|||||++.|+.. ... +.+ ..+.|.......+.+++ ..+.++||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 357999999999999999999532 211 111 24566666666777777 88999999
Q ss_pred CCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
||..+. .......++.+|.+++++|+...
T Consensus 90 PG~~df-------~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 90 PGHVDF-------TIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CCccch-------HHHHHHHHHHCCEEEEEEeCCCC
Confidence 997531 12334456789999999998654
No 286
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.01 E-value=1.5e-09 Score=92.55 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC---CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH-hhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI-AVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v---~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~-~~~ 137 (317)
..+++|+|++|+|||||++.|++..... +..|.++.+. .+..+.++||||..... ....... ...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~----~~~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR----YKLSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT----HHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH----HHHHHHHHhcc
Confidence 4589999999999999999999876431 2223333222 45678899999974321 1111111 112
Q ss_pred ccCcEEEEEecCC
Q 021103 138 KSSDIVLMVLDAS 150 (317)
Q Consensus 138 ~~~d~i~~v~~~~ 150 (317)
..++.+++++|..
T Consensus 81 ~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 81 KFVKGLIFMVDST 93 (218)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3378899999876
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.01 E-value=1.8e-10 Score=98.60 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=37.9
Q ss_pred eeeeeEEEecccCCCh-----hhHH-HHhc---CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGI-----DDVD-KLAR---QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~-----~~~~-~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
..|.++|+||+|+... +... .+.. ...++++||++|.|++++.+.|.+.+..
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3689999999998642 1221 2221 2457889999999999999999887643
No 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=103.03 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCcEEEEeCCcE--EEEEcCCCCcHHHHHHHHhccC
Q 021103 53 EGFEVTKFGHGR--VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 53 ~~~~~~~~~g~~--valiG~ngaGKSTLln~L~g~~ 86 (317)
.++++.+..|.. +||+|+||||||||+|+|+|..
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 356777788999 9999999999999999999985
No 289
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=5.8e-10 Score=103.49 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC-------CCCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~-------~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+..++++|.+|+|||||+|+|+|.. ..++++||||++...+. +. ..+.++||||+...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINH 224 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCT
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcH
Confidence 4579999999999999999999872 23789999999987643 32 23789999999754
No 290
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.98 E-value=1.9e-10 Score=111.80 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=77.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
.+..|..++|+|+||||||||+++++|...+ . |. .+.++..- .. . .+.....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-----------~-G~------~vi~~~~e----e~---~---~~l~~~~ 328 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-----------N-KE------RAILFAYE----ES---R---AQLLRNA 328 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-----------T-TC------CEEEEESS----SC---H---HHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-----------C-CC------CEEEEEEe----CC---H---HHHHHHH
Confidence 4567899999999999999999999998755 1 21 11111110 00 0 1111111
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH-----
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----- 201 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~----- 201 (317)
... ... +.+ +..+++ ..+..+..||+|++||+.++ +++| ||++||..
T Consensus 329 ~~~--------g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 329 YSW--------GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp HTT--------SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred HHc--------CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 100 000 111 223444 45677889999999999887 8999 99999987
Q ss_pred HH---HHHHHHhcccC-cEEEecCCC
Q 021103 202 LC---YQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 202 ~~---~~~l~~l~~~~-~~i~~shd~ 223 (317)
.. ..+++.++..+ ++++++|+.
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 53 44555555555 899999996
No 291
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.98 E-value=4.5e-10 Score=98.27 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|.++||+||||||||||+++|+|....+. .+. ....+.+++...++.... ..+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~------~~~-------~~~~i~~v~~d~~~~~l~-----~~~ 77 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNE------VEQ-------RQRKVVILSQDRFYKVLT-----AEQ 77 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG------SCG-------GGCSEEEEEGGGGBCCCC-----HHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhc------ccc-------cCCceEEEeCCcCccccC-----HhH
Confidence 56788888899999999999999999999999753210 000 011222333222221100 011
Q ss_pred HHhhhccCcEEEEEecCCCc-hhhHHHHHHHHHHccccccccCCcccccceeeeeeE--------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKS-EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS--------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia--------lilDEPt~~LD~~~~ 203 (317)
........ +.. ..+ ..+...+.+.|+.+.-....+++.||+|++||+.+. +++|||....+...
T Consensus 78 ~~~~~~~~----~~~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 78 KAKALKGQ----YNF--DHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp HHHHHTTC----CCT--TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHH-
T ss_pred hhhhhccC----CCC--CCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHH-
Confidence 11110000 000 111 112334445555432245567889999999998652 88999987777541
Q ss_pred HHHHHHhcccCcEEEecCC-CChhhHH
Q 021103 204 YQILHEYKIHNAEVLFRED-ATVDDLI 229 (317)
Q Consensus 204 ~~~l~~l~~~~~~i~~shd-~~~~~~~ 229 (317)
..+ ...++++++|+ ..+.+.+
T Consensus 151 ----~~~-~~~~i~v~th~~~~~~r~~ 172 (245)
T 2jeo_A 151 ----RDM-FHLRLFVDTDSDVRLSRRV 172 (245)
T ss_dssp ----HTT-CSEEEEEECCHHHHHHHHH
T ss_pred ----HHh-cCeEEEEECCHHHHHHHHH
Confidence 111 12378899997 4444433
No 292
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.97 E-value=1.5e-10 Score=93.50 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=45.6
Q ss_pred ccccCCcccccceeeeeeE---------------eeecCCCCCCCHHHHHHHHHHhc---cc-CcEEEecCCCChhhH
Q 021103 170 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEYK---IH-NAEVLFREDATVDDL 228 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia---------------lilDEPt~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~ 228 (317)
.++++..|||||+||+++| +++||||++||+.....+.+.+. .. .++|++||+..+.+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHh
Confidence 4567899999999999651 89999999999998665555443 33 489999999755443
No 293
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.93 E-value=2.8e-11 Score=121.84 Aligned_cols=41 Identities=5% Similarity=-0.108 Sum_probs=31.1
Q ss_pred eeecCC---CCCCCHHHH-HHHHHHhcccC-cEEEecCCCChhhHH
Q 021103 189 FNSTLP---LTHVDEKLC-YQILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 189 lilDEP---t~~LD~~~~-~~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
+++||| |++||.... ..+++.+...+ +++++||+.++.+++
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG 704 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 899999 999998764 56766665444 899999997665543
No 294
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.93 E-value=4.4e-11 Score=107.57 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=31.0
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++.+..|+.++|+|+||||||||++.|+|...+
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999998765
No 295
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.93 E-value=1.5e-10 Score=119.91 Aligned_cols=39 Identities=3% Similarity=-0.145 Sum_probs=30.2
Q ss_pred eeecCCCCCCCHHH----HHHHHHHhccc-C-cEEEecCCCChhh
Q 021103 189 FNSTLPLTHVDEKL----CYQILHEYKIH-N-AEVLFREDATVDD 227 (317)
Q Consensus 189 lilDEPt~~LD~~~----~~~~l~~l~~~-~-~~i~~shd~~~~~ 227 (317)
+++|||++|+|+.. ...+++.+... + ++|++||+.++..
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 89999999999765 45667777643 4 8999999966544
No 296
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.92 E-value=4.2e-09 Score=97.21 Aligned_cols=51 Identities=12% Similarity=-0.151 Sum_probs=42.4
Q ss_pred ccCC-cccccceeeeeeE------------------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCC
Q 021103 172 KRPP-QIYFKKKKTGGIS------------------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFRED 222 (317)
Q Consensus 172 ~~~~-~LS~g~~qr~~ia------------------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd 222 (317)
+++. .||+||+||+.+| +++||||++||+.....+++.+... .++|++||.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 3455 7999999999887 8999999999999988887777543 488899995
No 297
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.91 E-value=1.2e-09 Score=93.95 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|+.++|+||||||||||+++|+|...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999999996543
No 298
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.89 E-value=2.3e-10 Score=115.79 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++++. .+|..++|+||||+||||||++|+|..
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 456676 678999999999999999999999874
No 299
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.87 E-value=9.8e-11 Score=107.79 Aligned_cols=93 Identities=18% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEEC-Ce---------------eEEEecCCCccccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYN-DT---------------KIQLLDLPGIIEGA 123 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~-g~---------------~i~~~d~~g~~~~~ 123 (317)
.|.+++|+|+||||||||+|+|+|... + ..|.|.+. |. ...++|+||+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~-----------~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEI-----------LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCC-----------CCC-------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccccc-----------ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-
Confidence 578999999999999999999999987 6 33444332 21 1123344333210
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia 188 (317)
.+...........+.++++.+++ ..+..+..+| |++||++++
T Consensus 282 ----------------------~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 282 ----------------------GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp ----------------------CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHH
T ss_pred ----------------------hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHH
Confidence 00011111222345566777777 5778889999 999999886
No 300
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.87 E-value=1.4e-09 Score=93.70 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+.|..++|+||||||||||+++|+|..+|
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45899999999999999999999999863
No 301
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.87 E-value=2.5e-08 Score=87.51 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=37.9
Q ss_pred eeeeeEEEecccCCChhhHH---H-----------H------------------hc---CCCeEEEeccccccHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDVD---K-----------L------------------AR---QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~---~-----------l------------------~~---~~~~v~iSa~~~~~i~~l~~~ 282 (317)
..|.++|+||+|+......+ . + .. ...++++||+++.|+++|.+.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 46899999999998653211 0 0 11 126899999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.+.
T Consensus 251 i~~~~~ 256 (262)
T 1yrb_A 251 AYEHYC 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988763
No 302
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.86 E-value=1.2e-09 Score=97.30 Aligned_cols=138 Identities=9% Similarity=-0.045 Sum_probs=74.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|..++|+|+||||||||++.+++....-..+.+ ..+. .+..+.+++.- ............+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g--~~~~------~~~~v~~~~~e-------~~~~~~~~r~~~~g 91 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLE--VGEL------PTGPVIYLPAE-------DPPTAIHHRLHALG 91 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTC--CCCC------CCCCEEEEESS-------SCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCC--CccC------CCccEEEEECC-------CCHHHHHHHHHHHH
Confidence 346899999999999999999999985432000000 0000 01122222211 00000000000000
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE------eeecCCCC--CCCHH---HHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------FNSTLPLT--HVDEK---LCYQ 205 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------lilDEPt~--~LD~~---~~~~ 205 (317)
. + ........+++.+.+ ..+..+..||+|+.+++.-. +++|||++ ++|+. .+..
T Consensus 92 -~-------~-----~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 92 -A-------H-----LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp -T-------T-----SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -h-------h-----cChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 0 0 011223445666666 45667889999998876421 89999999 88862 2233
Q ss_pred H---HHHhc-ccC-cEEEecCCCC
Q 021103 206 I---LHEYK-IHN-AEVLFREDAT 224 (317)
Q Consensus 206 ~---l~~l~-~~~-~~i~~shd~~ 224 (317)
+ |..+. ..+ ++|+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 3 44442 334 8999999854
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.83 E-value=4.2e-10 Score=93.17 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee---eEEEEECCeeEEEec
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI---PGIIHYNDTKIQLLD 115 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~---~G~i~~~g~~i~~~d 115 (317)
..++|+|++|||||||+++|+|...+ . .|.|.++|.++.-+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-----------~g~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-----------RGLRVAVVKRHAHGDFEID 47 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-----------TTCCEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-----------cCCceEEEEEcCcccccCC
Confidence 47999999999999999999999876 4 799999988754443
No 304
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.83 E-value=2.9e-09 Score=95.23 Aligned_cols=58 Identities=31% Similarity=0.424 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+.+++++|.||+|||||+|+|+|... .+++.||||++.. .+.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcCCC
Confidence 45899999999999999999999874 5999999999885 3444 557889999999754
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.81 E-value=3.8e-10 Score=92.20 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=36.8
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+++.+.+|+.++|+||||||||||+++|+|.. | .+|.|.++|.++
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----------~~G~V~~~g~~i 70 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-----------HQGNVKSPTYTL 70 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-----------CCSCCCCCTTTC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-----------CCCeEEECCEee
Confidence 34455568999999999999999999999998 7 667777766554
No 306
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.81 E-value=1.8e-08 Score=102.95 Aligned_cols=83 Identities=24% Similarity=0.250 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CC---------------ccccceeeeeeEEEEEC----------------Cee
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AA---------------SYEFTTLTCIPGIIHYN----------------DTK 110 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~---------------~~p~tT~~~~~G~i~~~----------------g~~ 110 (317)
.+++|+|.+|+|||||++.|++.... .+ ..++.|.......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 37999999999999999999865211 11 12345655555666664 577
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.++||||..+.. ......++.+|.+++++|+...
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 8999999975421 2344556789999999998654
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.79 E-value=2.5e-09 Score=98.71 Aligned_cols=42 Identities=10% Similarity=-0.120 Sum_probs=32.5
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~ 233 (317)
+++|||+ |.+....+++....+.++++++|+.+..+.++++.
T Consensus 200 illDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp EEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred EecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 7899999 77776666666555558999999988778777754
No 308
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.79 E-value=1.8e-09 Score=100.26 Aligned_cols=121 Identities=16% Similarity=0.036 Sum_probs=70.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
..+|..++|+||||||||||+++|+|...+ . +|.|.+.+.++. +. .....+++.|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-----------~~~g~I~~~e~~~e------~~--~~~~~~~v~Q~---- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIE------YV--FKHKKSIVNQR---- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-----------HSCCEEEEEESSCC------SC--CCCSSSEEEEE----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-----------CCCcEEEEecccHh------hh--hccCceEEEee----
Confidence 356889999999999999999999999866 5 677755332221 10 00011111110
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
.+.. ....-...+...|. . .| =.+++|||+ |++.+..+++......+++
T Consensus 190 --------~~g~-~~~~~~~~l~~~L~-----~--~p------------d~illdE~~---d~e~~~~~l~~~~~g~~vi 238 (372)
T 2ewv_A 190 --------EVGE-DTKSFADALRAALR-----E--DP------------DVIFVGEMR---DLETVETALRAAETGHLVF 238 (372)
T ss_dssp --------EBTT-TBSCSHHHHHHHTT-----S--CC------------SEEEESCCC---SHHHHHHHHHHHTTTCEEE
T ss_pred --------ecCC-CHHHHHHHHHHHhh-----h--Cc------------CEEEECCCC---CHHHHHHHHHHHhcCCEEE
Confidence 0000 00000111111110 0 00 137899999 7887777777765445888
Q ss_pred EecCCCChhhHHHHHh
Q 021103 218 LFREDATVDDLIDVIE 233 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~ 233 (317)
.++|+.+..+.++++.
T Consensus 239 ~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 239 GTLHTNTAIDTIHRIV 254 (372)
T ss_dssp ECCCCCSHHHHHHHHH
T ss_pred EEECcchHHHHHHHHH
Confidence 9999988888887763
No 309
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.79 E-value=1.5e-08 Score=99.06 Aligned_cols=60 Identities=28% Similarity=0.331 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-------CCeeEEEecCCCccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-------NDTKIQLLDLPGIIEGA 123 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-------~g~~i~~~d~~g~~~~~ 123 (317)
.+|+|+|+||+|||||+|.|+|....+ ++++||++.+.|.+.| .+..+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 579999999999999999999987544 7899999999998765 56789999999997643
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.78 E-value=9.3e-11 Score=108.77 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.3
Q ss_pred cEEEEeC--CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 55 FEVTKFG--HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 55 ~~~~~~~--g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+++.+.. +++++|+|+||||||||+++|+|...+
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556667 899999999999999999999999877
No 311
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.75 E-value=1.4e-09 Score=111.02 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEec
Q 021103 159 LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFR 220 (317)
Q Consensus 159 ~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~s 220 (317)
..+.|..+|+ .+++++.+|||||+||+.|| +++||||++||+.....+++ .+... .|+|+++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456778888 36889999999999999988 89999999999987655544 44443 4999999
Q ss_pred CCCChhhHHH
Q 021103 221 EDATVDDLID 230 (317)
Q Consensus 221 hd~~~~~~~~ 230 (317)
||.++...+|
T Consensus 524 Hd~~~~~~aD 533 (916)
T 3pih_A 524 HDEEVIRNAD 533 (916)
T ss_dssp CCHHHHHTCS
T ss_pred CCHHHHHhCC
Confidence 9965444343
No 312
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.75 E-value=1.2e-08 Score=101.33 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCC---------Ccc------ccceeeeeeEEEEECCeeEEEecCCCccccccC
Q 021103 64 RVALIGFPSVGKSTLLTLLT---GTHSEA---------ASY------EFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~---g~~~~v---------~~~------p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 125 (317)
.|||+|..++|||||.-+|. |..... .++ -|.|.....-.+.|++..+.++||||..+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 58999999999999998884 544321 111 155666666677889999999999997653
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHcc
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVG 167 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~ 167 (317)
..+....++.+|..++++|+.... .+...+.+.+...+
T Consensus 81 ----~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~ 119 (638)
T 3j25_A 81 ----LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 119 (638)
T ss_dssp ----HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC
Confidence 235566778899999999986542 23344444444444
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=2.1e-09 Score=97.06 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---CCee-------------EEEecCCCccc
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---NDTK-------------IQLLDLPGIIE 121 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---~g~~-------------i~~~d~~g~~~ 121 (317)
....|+.++|+|+||||||||+|+|+|...| ..|.+.+ +|.. -.++|+||+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-----------~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-----------RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-----------C-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc-----------cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 3445889999999999999999999999887 4444444 3322 13557777643
Q ss_pred cccCCchhHHHHHhhhccC--cEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccc
Q 021103 122 GASEGKGRGRQVIAVSKSS--DIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYF 179 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~--d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~ 179 (317)
....... .......+++. +.+.+. ......+...++.++|+.+++ ..+.++..||.
T Consensus 234 ~~~~~~~-~~~~~~l~~~~~~~n~~~~-~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 234 LEINDIE-PEELKHYFKEFGDKQCFFS-DCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CCCCSSC-HHHHGGGSTTSSSCCCSST-TCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCcCC-HHHHHHHHHhcccccCcCC-CCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2111000 01112222222 222221 111112223467888999988 45666777775
No 314
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.74 E-value=7.8e-10 Score=99.92 Aligned_cols=123 Identities=16% Similarity=0.073 Sum_probs=62.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCcccc-------ceeeeeeEEEEECCeeEEEecCCCcccccc-CCchhH
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-------TTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRG 130 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~-------tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~-~~~~~~ 130 (317)
..|..++|+|+||||||||+|+|+ ...+ .+.... ||+.+. .+...+ --.++|+||+..... .....
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETT-TEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCcCcccccCCH-
Confidence 357899999999999999999999 7765 344433 333321 222211 124568888752111 00000
Q ss_pred HHHHhhhccCcEEE-EEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeee
Q 021103 131 RQVIAVSKSSDIVL-MVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGI 187 (317)
Q Consensus 131 ~~~~~~~~~~d~i~-~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~i 187 (317)
.+....+.....+. ...+.....+....+.++|+.+++ ..+.++..||+.+++++.+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~ 298 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKEL 298 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11100111000000 000101111223467888999998 4567788888755444444
No 315
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.71 E-value=2.2e-09 Score=109.41 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred HHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHH---HHHhccc-CcEEEecCC
Q 021103 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFRED 222 (317)
Q Consensus 161 ~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd 222 (317)
+.|..+|+ .+++.+.+|||||+||+.|| +++||||++||+.....+ ++.+... +|+|+++||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34778888 36889999999999999988 899999999998875555 4555544 499999999
Q ss_pred CChhhHHHH
Q 021103 223 ATVDDLIDV 231 (317)
Q Consensus 223 ~~~~~~~~~ 231 (317)
.+..+.+|+
T Consensus 566 l~~i~~ADr 574 (972)
T 2r6f_A 566 EDTMLAADY 574 (972)
T ss_dssp HHHHHSCSE
T ss_pred HHHHHhCCE
Confidence 654444444
No 316
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.71 E-value=2.2e-08 Score=85.76 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=36.8
Q ss_pred eeeeEEEecccCCCh-----hhHHH-Hhc---CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGI-----DDVDK-LAR---QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~-----~~~~~-l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+... +.... +.. ...++.+||++|.|++++.+.|.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 688999999998643 12221 221 345788999999999999999987653
No 317
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.69 E-value=2.7e-09 Score=109.05 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=54.6
Q ss_pred HHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHH---HHhccc-CcEEEecCCC
Q 021103 162 ELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQIL---HEYKIH-NAEVLFREDA 223 (317)
Q Consensus 162 ~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l---~~l~~~-~~~i~~shd~ 223 (317)
.|..+|+ .+++.+.+|||||+||+.|| ++|||||++||+.....++ +.++.. +|+|+++||.
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 4677787 36889999999999999888 8999999999998866555 444443 4999999996
Q ss_pred ChhhHHHH
Q 021103 224 TVDDLIDV 231 (317)
Q Consensus 224 ~~~~~~~~ 231 (317)
+.-+.+|+
T Consensus 584 ~~i~~ADr 591 (993)
T 2ygr_A 584 DTIEHADW 591 (993)
T ss_dssp HHHHTCSE
T ss_pred HHHHhCCE
Confidence 54444443
No 318
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.67 E-value=2e-08 Score=92.44 Aligned_cols=29 Identities=17% Similarity=0.041 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..|..++|+|+||||||||++.|++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45569999999999999999999999986
No 319
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.65 E-value=1.6e-07 Score=85.13 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC-CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA-ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v-~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
++.|+|.+|+|||||++.+.+...+. ....+.|.......+. ....++++||+|--+-.... + .....++.++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h--hhhhhccCCCE
Confidence 47899999999999999887654431 1123345544443331 23568899999853211000 0 11234678999
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
++++.|....
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999987654
No 320
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.63 E-value=5.2e-09 Score=106.07 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=55.0
Q ss_pred HHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCC
Q 021103 162 ELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDA 223 (317)
Q Consensus 162 ~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~ 223 (317)
.|..+|+ .+++++.+|||||+||+.|| +++||||++||+..+..+++ .+... +++|+++||.
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5777888 36899999999999999987 89999999999887655544 55544 4999999997
Q ss_pred ChhhHHHH
Q 021103 224 TVDDLIDV 231 (317)
Q Consensus 224 ~~~~~~~~ 231 (317)
++-+.+|+
T Consensus 442 ~~l~~aD~ 449 (842)
T 2vf7_A 442 DVIRRADW 449 (842)
T ss_dssp HHHTTCSE
T ss_pred HHHHhCCE
Confidence 55444444
No 321
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.61 E-value=3.5e-08 Score=94.81 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~ 83 (317)
..+|+|+|++||||||+++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999999
No 322
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.60 E-value=1.3e-08 Score=92.58 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+.++|+|+||||||||+|.|+|.... +--.-..+..|.+.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~---~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG---YKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC---CCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC---CcEEEEEecCcccCccHHHH
Confidence 47999999999999999999998610 00011122678777777654
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.57 E-value=4e-08 Score=92.44 Aligned_cols=41 Identities=24% Similarity=0.127 Sum_probs=33.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.++..++|+||||||||||+++|+|...+ ..|.|.+.+.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-----------~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-----------SERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-----------TTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-----------CCCEEEEecccc
Confidence 35789999999999999999999999876 567666655443
No 324
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.56 E-value=6.9e-08 Score=82.72 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|..++|+|+||||||||++.|++...+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999999987654
No 325
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.56 E-value=9.7e-09 Score=85.04 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=44.2
Q ss_pred cccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 171 NKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
.+++..|||||+||+++| +++||||++||+.....+.+.+ ....++|++||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 345678999999999877 7899999999998866655544 34458999999854443
No 326
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=3.6e-08 Score=87.13 Aligned_cols=57 Identities=28% Similarity=0.485 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
.+++++|.||+|||||+|.|+|... .+++.||+|+... .+.+ +..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccC
Confidence 4899999999999999999999876 4889999998864 3333 457889999998754
No 327
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=2.1e-08 Score=84.72 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=45.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDL 116 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~ 116 (317)
..|..++|+||||||||||+++|++..+ .....+.||+.|..|. ++|.+..+++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~ 73 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFIST 73 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccH
Confidence 3588999999999999999999999875 2466789999999987 67777766653
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.54 E-value=1.3e-08 Score=88.92 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---ccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLT---GTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~---g~~~~ 88 (317)
+.+++|+|+||||||||+++|+ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5799999999999999999999 88765
No 329
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.53 E-value=1.1e-08 Score=97.51 Aligned_cols=47 Identities=15% Similarity=-0.006 Sum_probs=40.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.++++.+.. ++++|+||||||||||+++|+|...| .+|.|.++|.++
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~ 67 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-----------DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-----------CTTTCCCCCTTS
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEEc
Confidence 477888888 99999999999999999999999887 677777776554
No 330
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.52 E-value=1.4e-08 Score=87.86 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHh-ccCCC-CCccccceeeeeeE
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLT-GTHSE-AASYEFTTLTCIPG 102 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~-g~~~~-v~~~p~tT~~~~~G 102 (317)
.++|+.+..|..++|+||||||||||+++|+ |..++ ......+|+.+..|
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g 69 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKG 69 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTT
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcc
Confidence 4566677779999999999999999999999 98754 22233444444444
No 331
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.48 E-value=2.6e-08 Score=83.19 Aligned_cols=48 Identities=29% Similarity=0.258 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeE
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+..++|+||||||||||+++|+|..++ -.....||+.|..|.+ +|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~ 50 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDY 50 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTB
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeee
Confidence 357999999999999999999998864 2234567777777764 44443
No 332
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=2.6e-08 Score=84.22 Aligned_cols=51 Identities=35% Similarity=0.335 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQL 113 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~ 113 (317)
+|..++|+||||||||||+++|+|.... -.+...||+.|..|. ++|.++.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~ 55 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYF 55 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEE
Confidence 4678999999999999999999998642 123345677777775 34544433
No 333
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=3.9e-07 Score=83.42 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=59.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTG-THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g-~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+.|.||||+|||||+++|++ ...+ ..|.+.++|..+... .+. . .....+...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-----------~~g~i~~~~~~~~~~--~~~----~-------~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP-----------GVYRLKIDVRQFVTA--SNR----K-------LELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT-----------TCCC-------------------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-----------CCCeEEecceeeccc--ccc----c-------ceeeeecccce
Confidence 389999999999999999999 5555 567777766543210 000 0 00011111222
Q ss_pred EEEEecCCCc-hhhHHHHHHHHHHccc--cccccCCcccc-cceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc---cCc
Q 021103 143 VLMVLDASKS-EGHRQILTKELEAVGL--RLNKRPPQIYF-KKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI---HNA 215 (317)
Q Consensus 143 i~~v~~~~~~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~-g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~---~~~ 215 (317)
+.+ ..... ......+++.++.+.- ...... .||+ ..+ .-.+++|||++ ||......+++.+.. ..+
T Consensus 94 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ls~l~~~---~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 94 LEI--TPSDMGNNDRIVIQELLKEVAQMEQVDFQD-SKDGLAHR---YKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp EEE--CCC----CCHHHHHHHHHHHTTTTC-------------C---CEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred EEe--cHhhcCCcchHHHHHHHHHHHHhccccccc-cccccCCC---CeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 211 11110 0011123333333221 111111 3344 111 11388999999 999887777666653 237
Q ss_pred EEEecCCCC
Q 021103 216 EVLFREDAT 224 (317)
Q Consensus 216 ~i~~shd~~ 224 (317)
+|++||+..
T Consensus 167 ~Il~t~~~~ 175 (354)
T 1sxj_E 167 LIMVCDSMS 175 (354)
T ss_dssp EEEEESCSC
T ss_pred EEEEeCCHH
Confidence 899999843
No 334
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.43 E-value=5.1e-08 Score=87.95 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=34.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccc-------cceeeeeeEEEEECCeeEEEecCCCccc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYE-------FTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p-------~tT~~~~~G~i~~~g~~i~~~d~~g~~~ 121 (317)
...|++++|+|+||||||||+|+|+|...+ ++..+ .||+... .+... ...++|+||+..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccc
Confidence 345889999999999999999999998866 34333 2444321 22222 124679999864
No 335
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.43 E-value=7.1e-08 Score=80.13 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQL 113 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~ 113 (317)
.|..++|+||||||||||+++|++...+ ......||+.|..|. ++|.++.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~ 56 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYF 56 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEE
Confidence 3679999999999999999999998752 244667788887764 34444433
No 336
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=2.7e-07 Score=78.47 Aligned_cols=25 Identities=20% Similarity=-0.040 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..|..++|+|+||+|||||++.|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999998
No 337
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.37 E-value=4.3e-06 Score=83.91 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCCC---C------Cc------cccceeeeeeEEEEEC-------CeeEEEecCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHSE---A------AS------YEFTTLTCIPGIIHYN-------DTKIQLLDLP 117 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~~---v------~~------~p~tT~~~~~G~i~~~-------g~~i~~~d~~ 117 (317)
..+||+|..++|||||.-+|. |.... + .+ .-|.|.....-.+.|. +..+.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999998885 33211 1 11 1244555545556664 4679999999
Q ss_pred CccccccCCchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHccc
Q 021103 118 GIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (317)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~l 168 (317)
|..+. ..+....++.+|..++++|+.... .+.+.+.+.+...++
T Consensus 94 GHvDF-------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 94 GHVDF-------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV 138 (709)
T ss_dssp SCTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC
T ss_pred CCccc-------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 97653 235566778899999999986543 234444444444443
No 338
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.36 E-value=5.8e-08 Score=89.79 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND 108 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g 108 (317)
++++.+..|..++|+|+||||||||+|+|+|...+ ..|.|.++|
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~ 210 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIED 210 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEES
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECC
Confidence 45666778999999999999999999999999887 789988865
No 339
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.34 E-value=2.9e-07 Score=76.64 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=32.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
+..|..++|+|+||||||||+++|+|. + ..|.+.+++.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~-----------~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--P-----------GVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--S-----------SSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--c-----------CCCeEEEcccc
Confidence 345889999999999999999999997 3 45777777654
No 340
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.32 E-value=2.4e-07 Score=77.99 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
....|..++|+||||||||||+++|+|..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999999985
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.31 E-value=3.1e-06 Score=68.08 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.|..++|+|+||+|||||++++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998754
No 342
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.31 E-value=1.2e-07 Score=84.95 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+.+|||+|++|||||||.+.|.+...+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999998754
No 343
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.30 E-value=1.5e-07 Score=91.17 Aligned_cols=56 Identities=2% Similarity=-0.151 Sum_probs=43.7
Q ss_pred cCCcc-cccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCChhhH
Q 021103 173 RPPQI-YFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDL 228 (317)
Q Consensus 173 ~~~~L-S~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~~~~ 228 (317)
++..| ||||+||+.|| +++||||++||+.....+.+ .+....++|++||+..+...
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45677 99999999887 78999999999987555544 44444599999999765543
No 344
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.30 E-value=1e-07 Score=90.79 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
.++++....|.+++|+|+||||||||+++|+|.+.+ ..|.|.+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g~ 329 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAAG 329 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEECC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEecC
Confidence 456667778999999999999999999999999876 6677777543
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.29 E-value=7.5e-08 Score=85.62 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++|+||||+|||||+++|+|...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999998643
No 346
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.28 E-value=2.1e-07 Score=79.01 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
|++++|+||||||||||+++|+|...+.+ +..|.+.++|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--------~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQG--------LPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTT--------CCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC--------CceEEEecCCC
Confidence 78999999999999999999999986410 14566666553
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.26 E-value=2e-07 Score=84.06 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
+|++++|+||||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEeec
Confidence 5789999999999999999999999987 67888887654
No 348
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.24 E-value=2.7e-06 Score=80.44 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc---------------CCCCCccccceeeeeeEEEEEC-----------CeeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT---------------HSEAASYEFTTLTCIPGIIHYN-----------DTKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~---------------~~~v~~~p~tT~~~~~G~i~~~-----------g~~i~~~d~ 116 (317)
..|+|+|++++|||||||.|.|. ....-....||+..+.|.+.|. +..+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 46999999999999999999985 1122223348888899988774 246889999
Q ss_pred CCcccc
Q 021103 117 PGIIEG 122 (317)
Q Consensus 117 ~g~~~~ 122 (317)
+|+.+.
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998654
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.23 E-value=1.4e-06 Score=78.11 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=28.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++. .+.+++++|+||+||||++..|++...+
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444 6889999999999999999999998765
No 350
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.18 E-value=9.1e-07 Score=80.77 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|+||||+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999986
No 351
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.18 E-value=1.4e-06 Score=78.61 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.1
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++....+..++|+|+|||||||++..|++...+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 344456789999999999999999999998765
No 352
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.18 E-value=3.1e-07 Score=83.68 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=34.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+|.+++|+||||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEeec
Confidence 46899999999999999999999999877 67777776544
No 353
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.14 E-value=6.6e-06 Score=77.56 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..++++|++||||||++..|+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998543
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.13 E-value=7.5e-07 Score=80.45 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHY 106 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~ 106 (317)
.|.++||+|+||||||||+++|+|... | .+|.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----------~~G~i~v 115 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWP-----------EHRRVEL 115 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTST-----------TCCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CCCeEEE
Confidence 378999999999999999999999876 6 6777766
No 355
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.12 E-value=4.3e-08 Score=84.69 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=30.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+.+.. ..++|+||||||||||+++|+|...| .+|.|.++|.++
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC-------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEEc
Confidence 44444 68899999999999999999999988 778888887765
No 356
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.11 E-value=8.2e-07 Score=82.31 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=43.7
Q ss_pred ccCCcccccceeeeeeE----------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhH
Q 021103 172 KRPPQIYFKKKKTGGIS----------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDL 228 (317)
Q Consensus 172 ~~~~~LS~g~~qr~~ia----------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~ 228 (317)
.++..||+||+||+.+| +++||||++||+.....+++.+. ...+++++||+..+...
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~ 351 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDV 351 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhh
Confidence 45578999999987431 89999999999998776666554 23489999999765443
No 357
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=1.2e-06 Score=74.48 Aligned_cols=43 Identities=23% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGI 103 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~ 103 (317)
.|..++|+||||||||||+++|++...+ ......||+.+..|.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 4789999999999999999999998754 334556677766553
No 358
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.09 E-value=5.9e-07 Score=86.64 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=35.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
+.+..|..++|+||||||||||+|+|+|...+ ..|.+.+.|.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-----------~~giitied~ 296 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-----------DAKVVSIEDT 296 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-----------TCCEEEEESS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-----------CCCEEEEcCc
Confidence 33456788999999999999999999999977 6777777654
No 359
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=1.2e-06 Score=82.75 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...++++|++|+||||+.+.|++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999853
No 360
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=98.03 E-value=1.5e-06 Score=63.24 Aligned_cols=33 Identities=48% Similarity=0.756 Sum_probs=30.6
Q ss_pred HHHhCeeEEEecCCCCCCCCCCCEEE-eccceee
Q 021103 284 WEEMGLVRVYTKPQGQQPDFTEPVVL-SVVCYIS 316 (317)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~p~~~-~~~~~v~ 316 (317)
++.|+.+|||||++|..|++++|++| ++|+||.
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~ 39 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVE 39 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHH
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHH
Confidence 56789999999999999999999999 9999984
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.01 E-value=3.6e-06 Score=69.48 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=29.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.++++...+| ..+|+|+||||||||+.+|.+...+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4667777777 8999999999999999999987654
No 362
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.98 E-value=4.1e-06 Score=70.34 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|..++|+|+||||||||+++|++...+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 345889999999999999999999998744
No 363
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.96 E-value=2e-06 Score=71.52 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
|..++|+|+||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 364
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.96 E-value=1.4e-05 Score=75.31 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
++..++++|+|||||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997654
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.84 E-value=1.7e-06 Score=75.68 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---ccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLT---GTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~---g~~~~ 88 (317)
.|.+++|+|+|||||||++++|+ |...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 47899999999999999999999 77655
No 366
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.83 E-value=2.3e-06 Score=80.79 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=42.5
Q ss_pred CCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChhh
Q 021103 174 PPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVDD 227 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~~ 227 (317)
+..||+||++++.+| +++|||+++||+.....+++.+. ..+ ++|++||+..+.+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 456999999999877 89999999999998777666554 223 7999999954433
No 367
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.82 E-value=8.9e-06 Score=68.37 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|..++|+|+||||||||+++|++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999999864
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=2.3e-05 Score=70.34 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=26.8
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+++... +..++++|+||+||||++..|++...+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444 789999999999999999999977643
No 369
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=1.3e-05 Score=67.21 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++++...++..++|+|++||||||+.+.|++..
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46778888889999999999999999999999765
No 370
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.73 E-value=4e-06 Score=80.51 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g 84 (317)
+..+.+....+..+.|+|.+||||||++|+|..
T Consensus 157 G~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 157 GEPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 455677777789999999999999999999876
No 371
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.70 E-value=1.6e-05 Score=64.81 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..++|+|+||||||||.++|++...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.67 E-value=1e-05 Score=67.45 Aligned_cols=49 Identities=29% Similarity=0.301 Sum_probs=38.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEEec
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 115 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~~d 115 (317)
|+|+||+|||||||++.|....+. .-..+.|||.|..|++ +|.+..+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeec
Confidence 789999999999999999876542 3457889999988864 466655543
No 373
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.67 E-value=1.9e-05 Score=66.24 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..++|+|+||||||||.++|++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998864
No 374
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.67 E-value=1e-05 Score=66.61 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
|..++|+||||+|||||+++|++...+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999998754
No 375
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.64 E-value=2e-05 Score=67.84 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.|..++|.|+||||||||+++|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999987
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.63 E-value=1.4e-05 Score=67.35 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..++|+|+||||||||+++|++...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 679999999999999999999998754
No 377
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.62 E-value=1.3e-05 Score=67.52 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGI 103 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~ 103 (317)
.|..++|+|+||||||||.+.|...... ....+.||+.+..|.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 4778999999999999999999876632 122456777776554
No 378
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=2.8e-05 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..++|+|+|||||||+.++|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999998763
No 379
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.40 E-value=3.4e-05 Score=74.95 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
..|..++|+|+||||||||+++|++.+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 45889999999999999999999999876
No 380
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.40 E-value=8.2e-05 Score=70.08 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=27.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+...++..++|+||||||||||+++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45555789999999999999999999987755
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.38 E-value=0.00011 Score=58.90 Aligned_cols=29 Identities=31% Similarity=0.236 Sum_probs=23.0
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..+...+ ...+|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3455443 4889999999999999999873
No 382
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.37 E-value=9.8e-05 Score=62.08 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+..++|+|++|||||||.+.|++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 447899999999999999999999875
No 383
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.36 E-value=3.9e-05 Score=71.00 Aligned_cols=31 Identities=19% Similarity=0.027 Sum_probs=27.2
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+++.+..|..++|+||||+|||||+++|+|.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456677899999999999999999999985
No 384
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00011 Score=63.04 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|..++|+||||||||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999999984
No 385
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.35 E-value=9.3e-05 Score=62.95 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+.+++|+|+|||||||+.+.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.32 E-value=2.8e-05 Score=67.96 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred CcEEEEeC---CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFG---HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~---g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++++.+.. |..++|+|++||||||+.++|++..
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 55666666 8899999999999999999999865
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=9.1e-05 Score=60.77 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..++|+|++||||||+.++|.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998753
No 388
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00011 Score=61.62 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g 84 (317)
.++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999998
No 389
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.30 E-value=3.1e-05 Score=70.16 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++...++..++++|+||+||||++..|++...+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45555667889999999999999999999998765
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.30 E-value=9.5e-05 Score=66.92 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+||+|+||||||||+++|.+...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999999875
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.29 E-value=5.4e-05 Score=65.84 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
++|+||||+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
No 392
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.27 E-value=0.00012 Score=61.28 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g 84 (317)
+|+|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
No 393
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.24 E-value=0.00044 Score=61.38 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=39.2
Q ss_pred eeeeeEEEecccCCChhhH----HHHhc-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 238 YMKCVYVYNKIDVIGIDDV----DKLAR-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~----~~l~~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.+|.++|+||+|+.+.+.. +.+.+ ..+++++||.++.|+++|.+.+.+.+.
T Consensus 50 ~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 4799999999999976433 23322 246889999999999999988877653
No 394
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.22 E-value=8.8e-05 Score=66.42 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.+.+++++|+|||||||+++.|++...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999998764
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.21 E-value=7.1e-05 Score=66.10 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
++|+||||+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999999976
No 396
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00027 Score=58.31 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
++....+..++|+|++||||||+.+.|+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344445789999999999999999999865
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.06 E-value=0.00024 Score=61.01 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|..++|.|++||||||+++.|+....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998764
No 398
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.03 E-value=0.00018 Score=60.76 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
|..++|+|++||||||+.+.|.+...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~ 51 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVR 51 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999999987754
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00025 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..++|+|++|||||||++.|++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998754
No 400
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.02 E-value=0.00041 Score=64.71 Aligned_cols=29 Identities=28% Similarity=0.108 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHH--hccCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLL--TGTHS 87 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L--~g~~~ 87 (317)
+..|..++|+|+||||||||++.| .+..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 345899999999999999999955 44443
No 401
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.00 E-value=0.0004 Score=58.48 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=22.6
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
..+...+ ...+|+|+|||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3455443 588999999999999999986
No 402
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00033 Score=58.57 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|+|+|||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 403
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.001 Score=59.61 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=34.6
Q ss_pred eeeeeEEEecccCCChhh---HHH---Hh-c-CCCeEEEeccccccHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD---VDK---LA-R-QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~---~~~---l~-~-~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..|.++|+||+|+.+... .+. .+ . ...++++||+++.|+++|.+.+.
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 478999999999986542 222 22 1 23578999999999999987653
No 404
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.94 E-value=0.00043 Score=67.23 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+|..++|+||||+|||||+++|++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999999998755
No 405
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.94 E-value=0.00038 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
|..++|+|++||||||+.+.|+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 406
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.90 E-value=0.00048 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 407
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00052 Score=56.54 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+..++|+|++||||||+.+.|+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 408
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.78 E-value=0.00067 Score=54.59 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 021103 63 GRVALIGFPSVGKSTLLTLL 82 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L 82 (317)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 409
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.76 E-value=0.0008 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..++|.|++||||||+.+.|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998644
No 410
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00086 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998765
No 411
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.68 E-value=0.00091 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.+++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999999743
No 412
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.0009 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
No 413
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.00097 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
..|.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.65 E-value=0.0035 Score=56.01 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=34.9
Q ss_pred eeeeeEEEecccCCChhh---HHHH---hcC-CCeEEEeccccccHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD---VDKL---ARQ-PNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~---~~~l---~~~-~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..|+++|+||+|+..... .+.+ ... ..++.+||+++.|++++.+.+.
T Consensus 115 ~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 479999999999986533 2222 111 4688999999999999987664
No 415
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.001 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998643
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.61 E-value=0.0012 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
|..|+|.|++||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 417
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0013 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|..++|+|+||+|||||+..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999996665543
No 418
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.59 E-value=0.0089 Score=54.66 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=32.4
Q ss_pred eeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 96 TLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 96 T~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
|.......+.+++..+.++|++|-..... .....+++++.++++++...
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGG
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECcc
Confidence 33334456677888999999998533211 12234578999999998764
No 419
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.58 E-value=0.0012 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..|+|.|++||||||+.+.|+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999987553
No 420
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.55 E-value=0.011 Score=54.15 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=28.4
Q ss_pred eeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 100 IPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 100 ~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
....+.+++..+.++||+|-..... .....+++++.++++++...
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred EEEEeeeCCeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 3345677888999999998533211 11224567999999998765
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.54 E-value=0.0011 Score=53.85 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|+|||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998654
No 422
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.53 E-value=0.0005 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.++++...+| ..+|+|+||||||||+.+|...
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4567777777 9999999999999999999655
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.53 E-value=0.0013 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 424
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.52 E-value=0.0013 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 425
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.51 E-value=0.0015 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998653
No 426
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.50 E-value=0.0015 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
No 427
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.0015 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|.|++||||||+.+.|....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998653
No 428
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.49 E-value=0.0014 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|.|+|++||||||+.+.|+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999999854
No 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.46 E-value=0.00094 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|+|+|||||||+.+.|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998765
No 430
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.0017 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|+|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 431
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.43 E-value=0.0019 Score=63.37 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=28.0
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++....|..++|+||||+|||||+++|++...+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344455789999999999999999999998865
No 432
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.42 E-value=0.0018 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998653
No 433
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.0018 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..|+|.|++||||||+.+.|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998654
No 434
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.42 E-value=0.00067 Score=56.90 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|+|.|++||||||+++.|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 435
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.39 E-value=0.005 Score=53.88 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=36.1
Q ss_pred eeeeeEEEecccCCChhhH----HHHhcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDV----DKLARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~----~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+|.++|+||+|+.+.+.. +.+.+. .++ ++||.++.|+++|.+.+.+.
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 3799999999999976433 233222 346 99999999999998887654
No 436
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0017 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 437
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0016 Score=56.62 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|+||||||||-+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.37 E-value=0.0018 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...++|.||+||||||+.+.|+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998553
No 439
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.36 E-value=0.0019 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
...|+|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|.|++||||||+.+.|+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998653
No 441
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.35 E-value=0.002 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..++|+|++|||||||++.|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999998653
No 442
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.34 E-value=0.0019 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|+|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
No 443
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.31 E-value=0.001 Score=61.32 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++.+.+..|.+++|+|++|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 566777889999999999999999999998764
No 444
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.31 E-value=0.0021 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998654
No 445
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.30 E-value=0.0021 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 446
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.30 E-value=0.0012 Score=61.96 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=27.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++. ++..++++|++|+||||++..|++...+
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444 6789999999999999999999998765
No 447
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.002 Score=57.23 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.|+|||||||+.+.|....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
No 448
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.30 E-value=0.0018 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.|+||||+|||||.++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 449
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.28 E-value=0.0025 Score=52.97 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
No 450
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.25 E-value=0.0058 Score=56.25 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.6
Q ss_pred eeeeeEEEecccCCChh--------hHHHHhc---C--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGID--------DVDKLAR---Q--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~--------~~~~l~~---~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+|+++|+||+|+...+ ++....+ . ..++++||++|+|+++|.+.|.+.+..
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 57999999999998642 2222122 1 247899999999999999999876543
No 451
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.24 E-value=0.015 Score=54.67 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-------------CCCccc--cceeeeeeEEEEEC---------C--eeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------EAASYE--FTTLTCIPGIIHYN---------D--TKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-------------~v~~~p--~tT~~~~~G~i~~~---------g--~~i~~~d~ 116 (317)
..|+|+|+.++|||+|+|.|.+... +....+ .+....+.|...|. | ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4789999999999999997763210 001111 12333466766552 3 34788999
Q ss_pred CCcccc
Q 021103 117 PGIIEG 122 (317)
Q Consensus 117 ~g~~~~ 122 (317)
.|+.+.
T Consensus 148 EG~~d~ 153 (457)
T 4ido_A 148 QGTFDS 153 (457)
T ss_dssp CCBTCT
T ss_pred cCCCCc
Confidence 998654
No 452
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.23 E-value=0.0022 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998654
No 453
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.22 E-value=0.0023 Score=58.97 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.7
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
..+...+ ...+|+|+|||||||+|.+|.
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3455544 588999999999999999986
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.20 E-value=0.002 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|.|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998654
No 455
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.19 E-value=0.0016 Score=59.68 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|..+.|+||||+|||||+..++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999997654
No 456
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.18 E-value=0.0026 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 457
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.17 E-value=0.0025 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|+|++||||||+-+.|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998643
No 458
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.15 E-value=0.0062 Score=56.04 Aligned_cols=51 Identities=22% Similarity=0.104 Sum_probs=37.6
Q ss_pred eeeeeEEEecccCCChh--------hHHHHh-c--C--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 238 YMKCVYVYNKIDVIGID--------DVDKLA-R--Q--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~--------~~~~l~-~--~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.+|+++|+||+|+...+ ++.... . . ..++.+||++|+|+++|.+.|.+...
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 58999999999997543 122111 1 2 15788999999999999999977553
No 459
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.15 E-value=0.0016 Score=62.45 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.|+||||+|||||+++|++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 460
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.14 E-value=0.003 Score=50.72 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~ 85 (317)
+|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 461
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.11 E-value=0.0029 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
..|+|.|++||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 462
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.10 E-value=0.0028 Score=51.10 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|.|++||||||+.+.|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 463
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.07 E-value=0.0033 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+.+|+|.|++||||||+.+.|+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 464
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.07 E-value=0.0033 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|.|++||||||+.+.|+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 465
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.06 E-value=0.0034 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|.|+|+|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 466
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.05 E-value=0.0035 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
No 467
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.05 E-value=0.0032 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|.|++||||||+.+.|+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.04 E-value=0.0032 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 469
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0036 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~ 85 (317)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.97 E-value=0.011 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|+||||+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 471
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.96 E-value=0.0042 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|.|++||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998643
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.91 E-value=0.0039 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|-|++||||||+.+.|...+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999986654
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0044 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
++.|+|||||||+|.-+.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.87 E-value=0.0038 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|++||||||+.++|++..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999999875
No 475
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.87 E-value=0.0047 Score=52.24 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..+.|.||+|+|||||++.++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987653
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.86 E-value=0.0045 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.||||+|||||.++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 477
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.81 E-value=0.0052 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+|.|+|||||||+|.-+.|+...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998654
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.80 E-value=0.0056 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
No 479
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.79 E-value=0.0058 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.|++|+|||||++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998764
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0051 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
...|+|.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.78 E-value=0.0031 Score=58.32 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..++|+|++|||||||++.|+....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
No 482
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.0043 Score=56.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.+.||||+||||+++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
No 483
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.73 E-value=0.0033 Score=63.81 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+..+.|+||||+|||||+++|++...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999999864
No 484
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.70 E-value=0.0059 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|.|++|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997653
No 485
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.70 E-value=0.0057 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.||||+|||||.+++++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 486
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.66 E-value=0.0047 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|.|++||||||+.+.|.....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
No 487
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.64 E-value=0.006 Score=52.78 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|.|++||||||+-+.|....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 488
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.0057 Score=55.64 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..+.|.|++|+|||||++.+++...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998653
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.58 E-value=0.0063 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
...|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.53 E-value=0.004 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|-|++||||||+.+.|...+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999987653
No 491
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.50 E-value=0.0074 Score=54.09 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=29.7
Q ss_pred eeeeeEEEecccCCChhh----HHH---Hhc--CCCeEEEeccccccHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD----VDK---LAR--QPNSVVISCNLKLNLDRLLA 281 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~----~~~---l~~--~~~~v~iSa~~~~~i~~l~~ 281 (317)
.+|.++|+||+|+.+.++ .+. .++ ...++++||.++.|+++|.+
T Consensus 117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 478899999999987533 222 221 24678888888877665544
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.50 E-value=0.0061 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
|..|++-|++||||||+.+.|...+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 493
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.44 E-value=0.0075 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.+.|.||+|+|||||++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999987654
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.39 E-value=0.0083 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
..|.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 495
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.35 E-value=0.0074 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.|++|+|||||.+.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998765
No 496
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.33 E-value=0.01 Score=54.10 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|..+.|.|+||+|||||...++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999988887554
No 497
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.29 E-value=0.015 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..++|+||+|+|||||...|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999998653
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.25 E-value=0.01 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++||+|+|||||||+.+.|+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
No 499
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.24 E-value=0.01 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.||||+|||||.+++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998775
No 500
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.22 E-value=0.01 Score=56.21 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
....|.+++|+|++|+|||||+|.|++..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34458899999999999999999998654
Done!