BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021106
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127
D+Y IL + R D+DL KK YR+LAL HPDKN P A +AF + A+ VLS+ K+
Sbjct: 8 DYYEILGVSRGASDEDL-KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 128 PYDH 131
YD
Sbjct: 67 QYDQ 70
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127
D+Y L + R D++ IK+ YR+ AL HPDKNK P A++ F + +A+ VLSD RK+
Sbjct: 4 DYYQTLGLARGASDEE-IKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 128 PYD 130
+D
Sbjct: 63 IFD 65
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127
D+Y+I+ + + TDD IK YR+LA HPD +K P A+ F V +AW VLSD +++
Sbjct: 6 DYYAIMGV-KPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 128 PYDH 131
YD
Sbjct: 65 EYDQ 68
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127
D Y +L + R D IKK Y+KLA HPDKNK P A+ F + A+ +LS+ K+T
Sbjct: 18 DPYRVLGVSRTASQAD-IKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 128 PYDH 131
YDH
Sbjct: 77 NYDH 80
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKN--KYPFADQAFTLVVDAWGVLSDTRK 125
D+Y +L + R+ + IKK YRKLAL HPDKN A++ F V +A+ VLSD +K
Sbjct: 10 DYYEVLDVPRQASSE-AIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 126 KTPYD 130
+ YD
Sbjct: 69 RDIYD 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKN--KYPFADQAFTLVVDAWGVLSDTRK 125
++Y +L + +D IKK YRKLAL HPDKN A++ F LV +A+ VLSD++K
Sbjct: 10 NYYEVLGVQASASPED-IKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 126 KTPYD 130
++ YD
Sbjct: 69 RSLYD 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 69 WYSILQIDRRTDDQDLIKKQYRKLALLLHPDKN--KYPFADQAFTLVVDAWGVLSDTRKK 126
+Y IL + R D IKK YR+ AL HPDKN FA++ F V +A+ VLSD K+
Sbjct: 4 YYEILDVPRSASADD-IKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 127 TPYD 130
YD
Sbjct: 63 EIYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 69 WYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTP 128
+Y IL + + ++ IKK + KLA+ HPDKNK P A+ F + +A+ LSD ++
Sbjct: 9 YYDILGVPKSASERQ-IKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 129 YD 130
YD
Sbjct: 68 YD 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127
D+Y+IL + + TDD IK YR+LA HPD +K A+ F + +AW VL D +++
Sbjct: 29 DYYAILGV-QPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 128 PYDH 131
YD
Sbjct: 88 EYDQ 91
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 70 YSILQIDRRTDDQDLIKKQYRKLALLLHPDKN-KYPFADQAFTLVVDAWGVLSDTRKKTP 128
Y +L +D+ D IKK YRKLAL HPDKN P A F + +A +L+D K+
Sbjct: 20 YHVLGLDKNATSDD-IKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 129 YDHELSL 135
YD SL
Sbjct: 79 YDKYGSL 85
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRK 125
D+Y IL + + ++++ I+K Y++LA+ HPD+N+ A+ F + +A+ VL+D++K
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 126 KTPYDH 131
+ YD
Sbjct: 62 RAAYDQ 67
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 69 WYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTP 128
+Y +L + + Q+ +KK YRKLAL HPDKN P + F + A+ VLSD +K+
Sbjct: 8 YYDVLGV-KPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKREL 64
Query: 129 YD 130
YD
Sbjct: 65 YD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 69 WYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTP 128
+Y +L + D +L KK YRK+AL HPDKN P + F + A+ VLSD +K+
Sbjct: 10 YYDVLGVKPDASDNEL-KKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 129 YDH 131
YD
Sbjct: 67 YDQ 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRK 125
D+Y IL + + ++++ I+K Y++LA+ HPD+N+ A+ F + +A+ VL+D++K
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 126 KTPYDH 131
+ YD
Sbjct: 62 RAAYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRK 125
D+Y IL + + ++++ I+K Y++LA+ HPD+N+ A+ F + +A+ VL+D++K
Sbjct: 3 QDYYEILGVSKTAEERE-IRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 126 KTPYDH 131
+ YD
Sbjct: 62 RAAYDQ 67
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 AEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWG 118
A +R+ N D + +L + + +D + K YRKLA+LLHPDK P ++ AF VV+A
Sbjct: 19 AIRRIRNSKDSWDMLGV-KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNART 77
Query: 119 VLSDTRKKTP 128
L K P
Sbjct: 78 ALLKNIKSGP 87
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFAD----------QAFTLVVDAW 117
DWYSIL D + DL K++Y+KL LL HPDK AD Q F + AW
Sbjct: 17 DWYSILGADPSANMSDL-KQKYQKLILLYHPDKQS---ADVPAGTMEECMQKFIEIDQAW 72
Query: 118 GVLSDTRKKTPYDHELS 134
+L + K YD + S
Sbjct: 73 KILGNEETKKKYDLQRS 89
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKK 126
D+Y IL + R ++ IKK Y +LA HPD NK P A + F+ + +A+ VLSD K+
Sbjct: 8 DYYQILGVPRNASQKE-IKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 127 TPYD 130
YD
Sbjct: 67 KQYD 70
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPF-------ADQAFTLVVDAWGVL 120
DWYSIL D + DL K++Y+KL L+ HPDK Q F + AW +L
Sbjct: 11 DWYSILGADPSANISDL-KQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 121 SDTRKKTPYD 130
+ K YD
Sbjct: 70 GNEETKREYD 79
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 70 YSILQIDRRTDDQDLIKKQYRKLALLLHPD--KNKYP--FADQAFTLVVDAWGVLSDTRK 125
Y +L+++R D+ + K YR LA HPD KNK A++ F ++ A+ L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 126 KTPYDHELS 134
KT YD+ L
Sbjct: 78 KTNYDYYLD 86
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 70 YSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFAD-QAFTLVVDAWGVLSDTRKKTP 128
Y +L + ++Q+L KK YRK AL HPDK P D + F + +A+ +L+D +K+
Sbjct: 11 YDLLGVSPSANEQEL-KKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREI 66
Query: 129 YDH 131
YD
Sbjct: 67 YDQ 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 63 VNNHHD--WYSILQIDRRTDDQDLIKKQYRKLALLLHPDKN-KYPFADQAFTLVVDAWGV 119
+ HD +YS+L + + ++ I++ ++KLAL LHPDKN P A F + A+ V
Sbjct: 15 IEGRHDQNFYSLLGVSKTASSRE-IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73
Query: 120 LSDTRKKTPYD 130
L D + YD
Sbjct: 74 LKDEDLRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKN-KYPFADQAFTLVVDAWGVLSDTRK 125
++YS+L + + ++ I++ ++KLAL LHPDKN P A F + A+ VL D
Sbjct: 2 QNFYSLLGVSKTASSRE-IRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 126 KTPYD 130
+ YD
Sbjct: 61 RKKYD 65
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPD----KNKYPFADQAFTLVVDAWGVLSDT 123
D+Y IL + R Q++IK YRKLAL HPD + + A++ F + A VLSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 124 RKKTPYD 130
+ +D
Sbjct: 442 EXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPD----KNKYPFADQAFTLVVDAWGVLSDT 123
D+Y IL + R Q++IK YRKLAL HPD + + A++ F + A VLSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKA-YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 124 RKKTPYD 130
+ +D
Sbjct: 442 EMRKKFD 448
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 55 VLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK----YPFADQAF 110
VL A E + W + D T +Q +KK YRK L++HPDK +A F
Sbjct: 112 VLWAGETK------WKPVGMADLVTPEQ--VKKVYRKAVLVVHPDKATGQPYEQYAKMIF 163
Query: 111 TLVVDAWGVLSDTRKK 126
+ DAW + +K
Sbjct: 164 MELNDAWSEFENQGQK 179
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 32.0 bits (71), Expect = 0.43, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 55 VLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK----YPFADQAF 110
VL A E + W + D T +Q +KK YRK L++HPDK +A F
Sbjct: 31 VLWAGETK------WKPVGXADLVTPEQ--VKKVYRKAVLVVHPDKATGQPYEQYAKXIF 82
Query: 111 TLVVDAWGVLSDTRKKTPY 129
+ DAW + +K Y
Sbjct: 83 XELNDAWSEFENQGQKPLY 101
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 55 VLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK----YPFADQAF 110
VL A E + W + D T +Q +KK YRK L++HPDK +A F
Sbjct: 44 VLWAGETK------WKPVGMADLVTPEQ--VKKVYRKAVLVVHPDKATGQPYEQYAKMIF 95
Query: 111 TLVVDAWGVLSDTRKKTPY 129
+ DAW + +K Y
Sbjct: 96 MELNDAWSEFENQGQKPLY 114
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 79 TDDQDLIKKQYRKLALLLHPDKNKYPF-ADQAFTLVVDAWGVLSDTRKKTPYDHEL 133
T Q IK Y + L HPD+N A + FT + A+ VL + YD L
Sbjct: 28 TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 85 IKKQYRKLALLLHPDK--------NKYPFADQAFTLVVDAW 117
++K Y++ L+LHPDK N+ A++ F L+ +AW
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 79 TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTK 138
T DQ ++K+YR+L HPD + ++Q+ TL A+ L D +++ Y L L
Sbjct: 29 TIDQSRLRKEYRQLQAQHHPDMAQQG-SEQSSTL-NQAYHTLKDPLRRSQY--MLKLLRN 84
Query: 139 IDLTTHSDS 147
IDLT S
Sbjct: 85 IDLTQEQTS 93
>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
pdb|3TJR|B Chain B, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
Length = 301
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 31 EFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQID 76
E LA E LL G D + + +++A NH DW ++ ID
Sbjct: 94 EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDID 139
>pdb|1YY7|A Chain A, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
pdb|1YY7|B Chain B, Crystal Structure Of Stringent Starvation Protein A
(Sspa), An Rna Polymerase-Associated Transcription
Factor
Length = 213
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 67 HDWYSIL-QIDR-RTDDQDLIKKQYRKLALLLHPDKNKYP-FADQAFTLV 113
HDWYS+L +I++ + + +KQ R+ L + P N+ P F + F+LV
Sbjct: 108 HDWYSLLYKIEQGNAQEAEAARKQLREELLSIAPVFNETPFFMSEEFSLV 157
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 79 TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTK 138
T DQ ++K+YR+L HPD + ++Q+ TL A+ L D +++ Y L L
Sbjct: 21 TIDQSRLRKEYRQLQAQHHPDMAQQG-SEQSSTL-NQAYHTLKDPLRRSQY--MLKLLRN 76
Query: 139 IDLTTHSDS 147
IDLT S
Sbjct: 77 IDLTQEQTS 85
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The Mitochondrial
Protein Import Motor
Length = 71
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPF 105
N + IL + T + +K+ +RK+ L HPDK PF
Sbjct: 12 NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,316,957
Number of Sequences: 62578
Number of extensions: 374126
Number of successful extensions: 642
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 39
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)