Query 021106
Match_columns 317
No_of_seqs 348 out of 2291
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.3E-32 7.1E-37 263.4 10.6 165 66-248 3-185 (371)
2 PRK14288 chaperone protein Dna 99.9 6.9E-26 1.5E-30 221.6 9.5 159 67-244 3-176 (369)
3 PRK14296 chaperone protein Dna 99.9 2.6E-25 5.7E-30 217.7 10.4 151 66-237 3-179 (372)
4 PRK14286 chaperone protein Dna 99.9 7.6E-25 1.6E-29 214.5 9.2 167 66-247 3-190 (372)
5 PRK14298 chaperone protein Dna 99.9 2E-24 4.4E-29 211.8 10.4 152 66-237 4-171 (377)
6 PRK14279 chaperone protein Dna 99.9 2.2E-24 4.8E-29 212.5 10.6 170 66-246 8-212 (392)
7 PRK14287 chaperone protein Dna 99.9 2E-24 4.3E-29 211.5 9.4 153 66-237 3-168 (371)
8 PTZ00037 DnaJ_C chaperone prot 99.9 2.7E-24 5.9E-29 213.4 8.4 145 66-235 27-177 (421)
9 PRK14285 chaperone protein Dna 99.9 5.3E-24 1.1E-28 208.1 10.1 160 67-245 3-184 (365)
10 PRK14278 chaperone protein Dna 99.9 5.9E-24 1.3E-28 208.6 10.0 152 67-236 3-168 (378)
11 PRK14276 chaperone protein Dna 99.9 4.2E-24 9.1E-29 209.8 8.9 153 66-237 3-176 (380)
12 PRK14282 chaperone protein Dna 99.9 2E-23 4.3E-28 204.3 10.9 155 66-238 3-183 (369)
13 PRK14284 chaperone protein Dna 99.9 2E-23 4.3E-28 205.7 10.7 167 67-248 1-199 (391)
14 PRK14280 chaperone protein Dna 99.9 1E-23 2.3E-28 206.7 8.7 151 67-236 4-172 (376)
15 PRK14301 chaperone protein Dna 99.9 1.7E-23 3.7E-28 205.0 9.6 162 66-245 3-182 (373)
16 KOG0712 Molecular chaperone (D 99.9 2.4E-23 5.3E-28 199.4 9.6 155 66-244 3-163 (337)
17 PRK14295 chaperone protein Dna 99.9 3.6E-23 7.7E-28 203.8 10.4 157 67-237 9-196 (389)
18 PRK14291 chaperone protein Dna 99.9 3.2E-23 7E-28 203.6 9.2 171 67-247 3-196 (382)
19 PRK14294 chaperone protein Dna 99.9 3.5E-23 7.7E-28 202.3 9.2 161 66-243 3-180 (366)
20 PRK14297 chaperone protein Dna 99.9 3.7E-23 8.1E-28 203.0 9.0 153 67-236 4-177 (380)
21 PRK10767 chaperone protein Dna 99.9 9E-23 2E-27 199.7 10.4 159 66-244 3-179 (371)
22 PRK14277 chaperone protein Dna 99.9 5.4E-23 1.2E-27 202.3 8.7 155 66-236 4-184 (386)
23 PRK14300 chaperone protein Dna 99.9 6.4E-23 1.4E-27 200.9 8.7 167 67-248 3-186 (372)
24 PRK14283 chaperone protein Dna 99.9 1.3E-22 2.8E-27 199.1 10.1 156 66-236 4-175 (378)
25 PRK14281 chaperone protein Dna 99.9 1.5E-22 3.2E-27 199.9 9.5 163 67-236 3-191 (397)
26 TIGR02349 DnaJ_bact chaperone 99.9 1.6E-22 3.5E-27 196.6 9.6 153 68-237 1-173 (354)
27 PRK14290 chaperone protein Dna 99.9 4.1E-22 8.8E-27 194.8 9.8 167 67-245 3-188 (365)
28 PRK14292 chaperone protein Dna 99.9 5.7E-22 1.2E-26 194.0 10.2 154 67-237 2-170 (371)
29 PRK14293 chaperone protein Dna 99.9 1.4E-21 3E-26 191.6 9.3 158 67-237 3-173 (374)
30 PRK14289 chaperone protein Dna 99.8 4.8E-21 1E-25 188.5 10.4 163 66-237 4-184 (386)
31 KOG0713 Molecular chaperone (D 99.8 9.1E-21 2E-25 180.3 4.3 70 64-134 13-83 (336)
32 PRK14299 chaperone protein Dna 99.8 3.6E-20 7.7E-25 176.1 6.1 130 67-202 4-155 (291)
33 KOG0715 Molecular chaperone (D 99.8 2E-19 4.2E-24 170.8 6.6 143 67-234 43-191 (288)
34 PRK10266 curved DNA-binding pr 99.8 4.5E-19 9.8E-24 169.5 5.6 122 67-202 4-143 (306)
35 KOG0624 dsRNA-activated protei 99.7 5.2E-17 1.1E-21 155.6 12.2 123 8-135 339-465 (504)
36 PF00226 DnaJ: DnaJ domain; I 99.7 1.1E-17 2.3E-22 123.8 2.5 62 68-130 1-64 (64)
37 KOG0716 Molecular chaperone (D 99.7 6.6E-17 1.4E-21 149.9 4.6 68 67-135 31-99 (279)
38 smart00271 DnaJ DnaJ molecular 99.6 1.3E-15 2.8E-20 110.8 6.1 58 67-125 1-60 (60)
39 KOG0691 Molecular chaperone (D 99.6 3.6E-16 7.8E-21 148.5 3.9 68 66-134 4-72 (296)
40 KOG0717 Molecular chaperone (D 99.6 7.1E-16 1.5E-20 151.5 4.2 67 66-133 7-75 (508)
41 cd06257 DnaJ DnaJ domain or J- 99.6 3.3E-15 7.2E-20 106.7 5.8 54 68-122 1-55 (55)
42 PTZ00341 Ring-infected erythro 99.6 2.2E-15 4.7E-20 159.1 5.4 69 65-134 571-639 (1136)
43 KOG0718 Molecular chaperone (D 99.6 1.7E-15 3.8E-20 149.0 4.0 67 66-133 8-78 (546)
44 KOG0550 Molecular chaperone (D 99.5 1.4E-14 3E-19 141.4 8.4 116 12-133 323-440 (486)
45 KOG0719 Molecular chaperone (D 99.5 3.8E-15 8.2E-20 135.7 3.4 69 66-135 13-84 (264)
46 COG2214 CbpA DnaJ-class molecu 99.5 2E-14 4.3E-19 126.5 4.5 66 66-132 5-72 (237)
47 KOG0720 Molecular chaperone (D 99.5 2.4E-14 5.2E-19 140.9 5.2 71 62-133 230-300 (490)
48 KOG0721 Molecular chaperone (D 99.5 8E-14 1.7E-18 125.9 7.6 72 65-137 97-169 (230)
49 TIGR03835 termin_org_DnaJ term 99.5 4.2E-14 9E-19 146.7 5.2 67 67-134 2-68 (871)
50 PRK05014 hscB co-chaperone Hsc 99.4 4.8E-13 1E-17 118.3 5.5 68 67-134 1-75 (171)
51 PRK01356 hscB co-chaperone Hsc 99.3 5.9E-13 1.3E-17 117.2 4.4 68 67-134 2-74 (166)
52 PHA03102 Small T antigen; Revi 99.3 4.7E-13 1E-17 116.2 3.6 64 68-134 6-70 (153)
53 PRK00294 hscB co-chaperone Hsc 99.3 1.5E-12 3.3E-17 115.4 5.9 69 66-134 3-78 (173)
54 PRK03578 hscB co-chaperone Hsc 99.3 2E-12 4.4E-17 114.9 5.6 69 66-134 5-80 (176)
55 KOG0722 Molecular chaperone (D 99.3 1.3E-12 2.8E-17 120.6 1.6 68 65-133 31-98 (329)
56 KOG0714 Molecular chaperone (D 99.2 5.5E-12 1.2E-16 116.3 2.9 68 66-134 2-71 (306)
57 PTZ00100 DnaJ chaperone protei 99.1 4.1E-11 8.9E-16 99.5 4.2 51 67-121 65-115 (116)
58 PRK09430 djlA Dna-J like membr 99.1 7.1E-11 1.5E-15 111.3 4.9 55 67-122 200-262 (267)
59 PRK01773 hscB co-chaperone Hsc 99.0 3E-10 6.5E-15 100.8 4.9 68 67-134 2-76 (173)
60 PHA02624 large T antigen; Prov 99.0 7.9E-10 1.7E-14 113.8 6.5 60 67-129 11-71 (647)
61 KOG1150 Predicted molecular ch 98.9 4.8E-10 1E-14 100.5 2.7 63 67-130 53-117 (250)
62 TIGR00714 hscB Fe-S protein as 98.9 1.7E-09 3.7E-14 94.5 5.5 55 80-134 3-63 (157)
63 COG5407 SEC63 Preprotein trans 98.8 2.2E-09 4.8E-14 106.0 2.6 68 65-133 96-169 (610)
64 COG5269 ZUO1 Ribosome-associat 98.5 7E-08 1.5E-12 90.3 4.0 68 66-133 42-114 (379)
65 KOG1789 Endocytosis protein RM 98.3 1.3E-06 2.9E-11 93.6 7.9 54 67-122 1281-1337(2235)
66 KOG0568 Molecular chaperone (D 98.0 7.3E-06 1.6E-10 75.5 4.6 55 67-122 47-102 (342)
67 KOG0723 Molecular chaperone (D 97.6 9.3E-05 2E-09 60.5 5.4 50 71-124 60-109 (112)
68 KOG3192 Mitochondrial J-type c 97.4 7.2E-05 1.6E-09 65.0 1.8 70 65-134 6-82 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.4 0.0044 9.4E-08 54.9 4.3 53 67-120 113-173 (174)
70 KOG0431 Auxilin-like protein a 96.1 0.023 5.1E-07 57.7 8.8 49 72-121 393-449 (453)
71 COG1076 DjlA DnaJ-domain-conta 94.7 0.01 2.2E-07 52.5 0.4 67 68-134 2-75 (174)
72 PF02178 AT_hook: AT hook moti 94.6 0.014 2.9E-07 30.5 0.6 11 306-316 1-11 (13)
73 smart00384 AT_hook DNA binding 94.5 0.019 4.1E-07 35.3 1.1 11 306-316 1-11 (26)
74 PF07719 TPR_2: Tetratricopept 93.6 0.21 4.5E-06 31.0 4.8 33 10-42 1-33 (34)
75 TIGR02098 MJ0042_CXXC MJ0042 f 93.5 0.05 1.1E-06 36.0 1.8 33 189-221 3-38 (38)
76 PF00515 TPR_1: Tetratricopept 92.7 0.34 7.3E-06 30.3 4.8 33 10-42 1-33 (34)
77 PF13428 TPR_14: Tetratricopep 90.3 0.66 1.4E-05 31.2 4.5 37 11-47 2-38 (44)
78 PF13719 zinc_ribbon_5: zinc-r 90.1 0.19 4.1E-06 33.4 1.6 31 189-219 3-36 (37)
79 PF03656 Pam16: Pam16; InterP 89.9 0.59 1.3E-05 39.7 4.8 48 70-121 61-108 (127)
80 KOG0624 dsRNA-activated protei 89.4 1.6 3.4E-05 43.4 7.9 113 4-119 32-158 (504)
81 PF13414 TPR_11: TPR repeat; P 88.8 0.59 1.3E-05 33.7 3.6 36 9-44 2-37 (69)
82 KOG0553 TPR repeat-containing 87.1 0.9 2E-05 43.8 4.6 39 6-44 77-115 (304)
83 PF13717 zinc_ribbon_4: zinc-r 86.6 0.36 7.8E-06 31.9 1.2 31 189-219 3-36 (36)
84 PRK10866 outer membrane biogen 86.2 13 0.00028 34.5 11.8 42 73-114 128-171 (243)
85 PF13181 TPR_8: Tetratricopept 85.0 1.9 4.1E-05 26.7 4.0 32 10-41 1-32 (34)
86 PF14863 Alkyl_sulf_dimr: Alky 83.4 1.7 3.7E-05 37.4 4.2 49 10-58 70-118 (141)
87 COG3063 PilF Tfp pilus assembl 80.5 11 0.00023 35.5 8.6 69 9-100 34-102 (250)
88 KOG4234 TPR repeat-containing 79.5 4.7 0.0001 37.4 5.8 40 6-45 91-130 (271)
89 PF14853 Fis1_TPR_C: Fis1 C-te 79.3 5.8 0.00013 28.5 5.1 43 14-56 5-47 (53)
90 KOG0724 Zuotin and related mol 79.3 2.3 5E-05 41.1 4.0 52 81-132 5-61 (335)
91 PRK00398 rpoP DNA-directed RNA 78.2 1.8 3.8E-05 29.9 2.1 29 190-220 5-33 (46)
92 PRK11827 hypothetical protein; 76.7 1.5 3.2E-05 32.6 1.4 28 189-218 9-36 (60)
93 PF13432 TPR_16: Tetratricopep 76.6 6.4 0.00014 27.9 4.8 31 15-45 2-32 (65)
94 TIGR02552 LcrH_SycD type III s 76.6 21 0.00045 28.7 8.4 38 8-45 15-52 (135)
95 PF13174 TPR_6: Tetratricopept 76.2 5.9 0.00013 23.9 4.0 31 12-42 2-32 (33)
96 PF03704 BTAD: Bacterial trans 76.1 14 0.00031 30.5 7.5 35 13-47 65-99 (146)
97 PRK15174 Vi polysaccharide exp 74.9 21 0.00046 37.8 10.1 119 12-133 286-417 (656)
98 PF13371 TPR_9: Tetratricopept 73.9 5.7 0.00012 28.6 4.0 28 18-45 3-30 (73)
99 PF13414 TPR_11: TPR repeat; P 73.6 5.2 0.00011 28.6 3.7 34 8-41 35-69 (69)
100 PLN03088 SGT1, suppressor of 73.4 6 0.00013 38.7 5.2 36 11-46 3-38 (356)
101 PF13432 TPR_16: Tetratricopep 73.0 4.8 0.0001 28.5 3.4 36 8-43 29-64 (65)
102 PRK10370 formate-dependent nit 73.0 34 0.00073 30.5 9.6 38 8-45 71-108 (198)
103 COG0777 AccD Acetyl-CoA carbox 72.8 1.7 3.8E-05 41.5 1.2 33 185-218 25-57 (294)
104 PF06943 zf-LSD1: LSD1 zinc fi 72.0 2.9 6.4E-05 25.6 1.6 23 191-215 1-23 (25)
105 PRK00464 nrdR transcriptional 71.6 2.7 5.8E-05 36.8 2.0 36 190-225 2-45 (154)
106 PF14205 Cys_rich_KTR: Cystein 71.2 4.1 8.8E-05 29.6 2.5 33 186-218 2-38 (55)
107 smart00028 TPR Tetratricopepti 70.5 8.5 0.00018 21.3 3.6 31 12-42 3-33 (34)
108 PF14559 TPR_19: Tetratricopep 69.4 5.4 0.00012 28.3 3.0 25 20-44 1-25 (68)
109 PRK05685 fliS flagellar protei 68.7 23 0.00049 29.9 7.0 32 8-39 33-64 (132)
110 PF10475 DUF2450: Protein of u 68.1 50 0.0011 31.4 10.0 82 15-123 132-213 (291)
111 PF10571 UPF0547: Uncharacteri 67.9 2.3 5E-05 26.2 0.6 25 190-220 2-26 (26)
112 KOG3824 Huntingtin interacting 67.0 28 0.00061 34.4 8.0 72 5-78 111-182 (472)
113 PF14369 zf-RING_3: zinc-finge 66.8 5.2 0.00011 26.3 2.2 31 186-219 2-32 (35)
114 PF13525 YfiO: Outer membrane 66.3 95 0.0021 27.5 11.7 37 9-45 4-40 (203)
115 KOG2041 WD40 repeat protein [G 64.8 29 0.00063 37.7 8.2 63 67-141 1048-1110(1189)
116 PF13512 TPR_18: Tetratricopep 64.7 52 0.0011 28.5 8.5 35 10-44 10-44 (142)
117 CHL00174 accD acetyl-CoA carbo 63.8 2.4 5.3E-05 40.9 0.2 32 186-218 36-67 (296)
118 TIGR02795 tol_pal_ybgF tol-pal 63.8 39 0.00084 25.9 7.2 35 10-44 2-36 (119)
119 PF13446 RPT: A repeated domai 62.2 11 0.00024 27.3 3.4 26 68-94 6-31 (62)
120 PF13512 TPR_18: Tetratricopep 61.7 1.1E+02 0.0023 26.5 10.3 35 13-47 50-84 (142)
121 PRK05654 acetyl-CoA carboxylas 61.2 3 6.5E-05 40.2 0.3 32 186-218 25-56 (292)
122 PRK15359 type III secretion sy 60.9 17 0.00037 30.6 4.9 89 12-101 26-126 (144)
123 PF03966 Trm112p: Trm112p-like 60.7 2.5 5.4E-05 31.6 -0.3 16 203-218 48-63 (68)
124 PF11833 DUF3353: Protein of u 60.3 20 0.00044 32.4 5.5 38 76-121 1-38 (194)
125 KOG0547 Translocase of outer m 59.9 27 0.00058 36.4 6.7 48 8-55 113-160 (606)
126 TIGR00515 accD acetyl-CoA carb 59.7 3.2 7E-05 39.8 0.2 32 186-218 24-55 (285)
127 PF13176 TPR_7: Tetratricopept 58.8 21 0.00046 22.7 4.0 29 13-41 2-30 (36)
128 COG2835 Uncharacterized conser 58.2 5.5 0.00012 29.6 1.2 28 189-218 9-36 (60)
129 KOG0543 FKBP-type peptidyl-pro 57.5 25 0.00055 35.3 6.0 79 14-101 261-343 (397)
130 PF13371 TPR_9: Tetratricopept 57.4 12 0.00025 27.0 2.8 42 8-49 27-68 (73)
131 PRK15359 type III secretion sy 57.3 39 0.00085 28.3 6.5 39 8-46 56-94 (144)
132 TIGR01053 LSD1 zinc finger dom 57.1 7.9 0.00017 24.9 1.6 25 190-216 3-27 (31)
133 PF14559 TPR_19: Tetratricopep 55.7 18 0.00039 25.5 3.6 40 10-49 25-64 (68)
134 PF14561 TPR_20: Tetratricopep 55.6 36 0.00077 26.8 5.6 37 8-44 20-56 (90)
135 PF11817 Foie-gras_1: Foie gra 54.4 45 0.00097 30.8 6.9 62 6-68 174-236 (247)
136 TIGR03504 FimV_Cterm FimV C-te 53.7 23 0.00049 24.4 3.6 25 14-38 3-27 (44)
137 PRK15179 Vi polysaccharide bio 53.3 38 0.00083 36.5 7.0 115 10-126 86-224 (694)
138 TIGR02795 tol_pal_ybgF tol-pal 52.9 29 0.00062 26.6 4.7 35 11-45 40-74 (119)
139 PF02064 MAS20: MAS20 protein 52.4 40 0.00087 28.4 5.6 39 13-54 66-104 (121)
140 KOG0543 FKBP-type peptidyl-pro 50.4 26 0.00057 35.2 4.9 33 14-46 295-327 (397)
141 PLN03088 SGT1, suppressor of 50.2 38 0.00083 33.1 6.0 38 9-46 35-72 (356)
142 PF13374 TPR_10: Tetratricopep 50.0 45 0.00097 20.8 4.5 31 11-41 3-33 (42)
143 PF13429 TPR_15: Tetratricopep 49.8 39 0.00084 31.1 5.7 38 8-45 144-181 (280)
144 PF14687 DUF4460: Domain of un 49.4 43 0.00094 27.7 5.3 45 81-125 7-56 (112)
145 PF14346 DUF4398: Domain of un 49.2 37 0.00081 27.0 4.8 32 8-39 43-74 (103)
146 TIGR02552 LcrH_SycD type III s 49.1 62 0.0013 25.8 6.2 39 9-47 50-88 (135)
147 PF10263 SprT-like: SprT-like 48.8 13 0.00028 31.5 2.2 37 185-221 120-156 (157)
148 PF14621 RFX5_DNA_bdg: RFX5 DN 48.7 7.5 0.00016 35.0 0.7 13 304-316 66-78 (219)
149 COG4105 ComL DNA uptake lipopr 48.7 2.5E+02 0.0053 26.7 11.7 109 9-117 33-166 (254)
150 PF13525 YfiO: Outer membrane 48.3 41 0.00089 29.9 5.5 92 10-113 42-136 (203)
151 TIGR01206 lysW lysine biosynth 48.1 17 0.00037 26.3 2.3 36 189-224 3-38 (54)
152 KOG0553 TPR repeat-containing 47.6 38 0.00083 32.9 5.3 29 15-43 120-148 (304)
153 PF07219 HemY_N: HemY protein 47.4 57 0.0012 26.3 5.7 33 7-39 56-88 (108)
154 smart00834 CxxC_CXXC_SSSS Puta 47.2 22 0.00047 23.2 2.6 30 187-216 4-34 (41)
155 COG3677 Transposase and inacti 47.0 12 0.00026 31.7 1.7 37 185-221 27-66 (129)
156 PRK10866 outer membrane biogen 46.8 49 0.0011 30.6 5.9 38 9-46 31-68 (243)
157 PRK15363 pathogenicity island 46.4 2.1E+02 0.0045 25.2 10.6 38 7-44 32-69 (157)
158 PF13913 zf-C2HC_2: zinc-finge 46.0 10 0.00022 22.9 0.8 12 209-220 3-14 (25)
159 PF13453 zf-TFIIB: Transcripti 45.4 11 0.00024 25.2 1.0 28 191-219 2-30 (41)
160 PF02561 FliS: Flagellar prote 45.4 39 0.00085 27.8 4.5 32 8-39 27-58 (122)
161 COG5010 TadD Flp pilus assembl 44.7 49 0.0011 31.4 5.5 37 12-48 102-138 (257)
162 COG2250 Uncharacterized conser 44.0 69 0.0015 27.0 5.9 84 8-102 11-95 (132)
163 TIGR00208 fliS flagellar biosy 42.8 79 0.0017 26.4 6.0 32 8-39 29-60 (124)
164 smart00647 IBR In Between Ring 42.4 21 0.00045 25.3 2.1 31 188-218 18-50 (64)
165 KOG4443 Putative transcription 42.0 18 0.00039 38.5 2.4 55 186-242 60-116 (694)
166 COG5552 Uncharacterized conser 41.4 75 0.0016 24.7 5.1 46 68-114 4-49 (88)
167 PLN03098 LPA1 LOW PSII ACCUMUL 41.4 83 0.0018 32.3 6.9 38 8-45 73-110 (453)
168 PF10849 DUF2654: Protein of u 41.2 1.2E+02 0.0026 23.2 6.0 37 6-42 12-48 (70)
169 PRK10803 tol-pal system protei 41.1 1.9E+02 0.0042 27.2 9.0 36 9-44 141-177 (263)
170 TIGR03302 OM_YfiO outer membra 40.6 39 0.00084 30.0 4.1 33 14-46 170-202 (235)
171 TIGR00990 3a0801s09 mitochondr 40.5 2E+02 0.0042 30.0 9.8 34 9-42 126-159 (615)
172 PRK12496 hypothetical protein; 40.5 13 0.00029 32.7 1.0 27 188-218 126-153 (164)
173 KOG3060 Uncharacterized conser 40.2 35 0.00077 32.7 3.8 37 9-45 153-189 (289)
174 KOG1126 DNA-binding cell divis 40.1 26 0.00056 37.3 3.2 37 7-43 418-454 (638)
175 KOG0714 Molecular chaperone (D 39.9 5.5 0.00012 36.3 -1.6 37 8-45 3-39 (306)
176 PF07721 TPR_4: Tetratricopept 39.4 39 0.00085 20.0 2.7 23 12-34 3-25 (26)
177 TIGR02605 CxxC_CxxC_SSSS putat 39.3 36 0.00078 23.5 2.9 30 187-216 4-34 (52)
178 COG1198 PriA Primosomal protei 39.2 30 0.00066 37.5 3.6 43 190-237 446-488 (730)
179 PF15469 Sec5: Exocyst complex 39.2 59 0.0013 28.4 4.9 77 18-102 94-174 (182)
180 PF04505 Dispanin: Interferon- 39.0 35 0.00077 26.5 3.1 24 16-39 43-66 (82)
181 COG2517 Predicted RNA-binding 38.7 50 0.0011 30.0 4.3 37 9-45 12-50 (219)
182 smart00531 TFIIE Transcription 38.6 14 0.00029 31.8 0.7 34 187-220 98-135 (147)
183 KOG4684 Uncharacterized conser 38.2 1.2E+02 0.0026 28.3 6.7 38 188-228 80-117 (275)
184 PF14353 CpXC: CpXC protein 37.9 20 0.00042 29.8 1.6 10 210-219 40-49 (128)
185 PRK12370 invasion protein regu 37.9 1.6E+02 0.0035 30.4 8.7 30 17-46 345-374 (553)
186 smart00249 PHD PHD zinc finger 37.5 25 0.00054 22.7 1.8 44 191-239 2-45 (47)
187 KOG0548 Molecular co-chaperone 36.3 99 0.0021 32.4 6.5 38 8-45 356-393 (539)
188 cd00189 TPR Tetratricopeptide 36.3 1.1E+02 0.0025 20.6 5.3 32 13-44 3-34 (100)
189 TIGR02642 phage_xxxx uncharact 35.3 30 0.00064 31.3 2.4 28 208-235 99-126 (186)
190 PF05129 Elf1: Transcription e 35.2 21 0.00047 27.8 1.3 35 190-225 24-62 (81)
191 COG1379 PHP family phosphoeste 34.5 10 0.00022 37.4 -0.8 32 186-218 244-275 (403)
192 COG4235 Cytochrome c biogenesi 34.4 1.3E+02 0.0029 29.0 6.8 96 8-122 154-255 (287)
193 TIGR02300 FYDLN_acid conserved 34.3 29 0.00064 29.5 2.0 13 208-220 9-21 (129)
194 KOG4648 Uncharacterized conser 34.2 1.1E+02 0.0024 30.8 6.2 85 12-99 99-215 (536)
195 COG1327 Predicted transcriptio 33.8 25 0.00054 30.8 1.6 22 209-230 29-51 (156)
196 TIGR03302 OM_YfiO outer membra 33.4 1E+02 0.0022 27.2 5.6 36 9-44 32-67 (235)
197 TIGR00244 transcriptional regu 33.3 35 0.00077 29.7 2.5 23 208-230 28-51 (147)
198 PF09723 Zn-ribbon_8: Zinc rib 33.1 38 0.00083 22.8 2.1 28 189-216 6-34 (42)
199 COG1439 Predicted nucleic acid 33.0 23 0.00051 31.7 1.3 26 186-217 137-162 (177)
200 PF02591 DUF164: Putative zinc 33.0 18 0.00038 25.8 0.5 28 189-216 23-54 (56)
201 PF09538 FYDLN_acid: Protein o 32.9 30 0.00065 28.5 1.9 10 210-219 28-37 (108)
202 PF07709 SRR: Seven Residue Re 32.4 37 0.00079 17.7 1.5 13 109-121 2-14 (14)
203 PF08996 zf-DNA_Pol: DNA Polym 32.1 22 0.00049 31.7 1.1 35 185-219 15-56 (188)
204 PF14787 zf-CCHC_5: GAG-polypr 32.1 21 0.00045 23.8 0.6 12 209-220 3-14 (36)
205 PRK10370 formate-dependent nit 31.9 1.7E+02 0.0037 26.0 6.8 43 9-51 106-151 (198)
206 PF04212 MIT: MIT (microtubule 31.8 1.2E+02 0.0027 22.0 5.0 32 8-39 3-34 (69)
207 PTZ00043 cytochrome c oxidase 31.7 2.9E+02 0.0062 26.1 8.1 38 82-121 95-132 (268)
208 TIGR00595 priA primosomal prot 31.4 45 0.00098 34.4 3.3 43 190-237 224-266 (505)
209 PRK11189 lipoprotein NlpI; Pro 31.0 1.7E+02 0.0038 27.4 7.0 32 13-44 101-132 (296)
210 COG0484 DnaJ DnaJ-class molecu 30.9 42 0.00091 33.5 2.8 40 206-248 181-220 (371)
211 COG3947 Response regulator con 30.8 35 0.00076 33.4 2.2 31 16-46 285-315 (361)
212 cd04476 RPA1_DBD_C RPA1_DBD_C: 30.6 28 0.00061 30.0 1.4 30 186-218 32-61 (166)
213 PRK10220 hypothetical protein; 30.5 30 0.00066 28.7 1.5 31 189-222 4-34 (111)
214 KOG1905 Class IV sirtuins (SIR 30.4 17 0.00038 35.3 0.1 23 183-205 143-165 (353)
215 KOG2376 Signal recognition par 29.9 1.6E+02 0.0035 31.3 7.0 75 11-100 176-258 (652)
216 KOG4642 Chaperone-dependent E3 29.8 1.3E+02 0.0027 28.8 5.6 40 8-47 8-47 (284)
217 PF11331 DUF3133: Protein of u 29.7 15 0.00033 25.7 -0.3 30 188-217 6-40 (46)
218 PF13424 TPR_12: Tetratricopep 29.1 2E+02 0.0044 20.6 5.8 31 9-39 4-34 (78)
219 PF15135 UPF0515: Uncharacteri 28.8 28 0.0006 33.0 1.1 46 191-244 135-186 (278)
220 PF08274 PhnA_Zn_Ribbon: PhnA 28.6 32 0.0007 21.9 1.1 24 190-216 4-27 (30)
221 PF05168 HEPN: HEPN domain; I 28.6 2.7E+02 0.0059 21.4 8.3 32 8-39 6-37 (118)
222 TIGR00985 3a0801s04tom mitocho 28.4 1.4E+02 0.0031 26.0 5.4 39 13-54 93-132 (148)
223 PF13763 DUF4167: Domain of un 28.3 1.1E+02 0.0023 24.1 4.1 29 8-36 37-65 (80)
224 PF01155 HypA: Hydrogenase exp 28.2 31 0.00067 28.3 1.2 29 186-218 68-96 (113)
225 PRK14873 primosome assembly pr 28.1 53 0.0011 35.3 3.2 43 189-237 393-435 (665)
226 PRK05580 primosome assembly pr 27.4 55 0.0012 35.1 3.2 40 190-234 392-431 (679)
227 PF09862 DUF2089: Protein of u 27.3 34 0.00074 28.5 1.3 22 191-218 1-22 (113)
228 KOG4056 Translocase of outer m 27.2 1.5E+02 0.0033 25.7 5.2 38 14-54 85-122 (143)
229 TIGR00990 3a0801s09 mitochondr 27.2 1.4E+02 0.003 31.1 6.1 36 9-44 330-365 (615)
230 PF09791 Oxidored-like: Oxidor 27.1 34 0.00074 24.2 1.1 26 216-241 1-29 (48)
231 TIGR02521 type_IV_pilW type IV 26.7 2.1E+02 0.0045 23.9 6.2 36 9-44 30-65 (234)
232 TIGR00686 phnA alkylphosphonat 26.5 37 0.00081 28.1 1.4 30 190-222 4-33 (109)
233 KOG2002 TPR-containing nuclear 26.3 2.3E+02 0.005 31.9 7.6 90 13-119 167-265 (1018)
234 PF10979 DUF2786: Protein of u 26.2 63 0.0014 22.1 2.3 23 5-27 19-41 (43)
235 COG1096 Predicted RNA-binding 26.2 37 0.00081 30.7 1.4 27 187-217 148-174 (188)
236 TIGR00100 hypA hydrogenase nic 25.6 42 0.00091 27.7 1.6 27 188-218 70-96 (115)
237 PF07720 TPR_3: Tetratricopept 25.3 2E+02 0.0043 18.7 4.6 31 11-41 2-34 (36)
238 PRK12380 hydrogenase nickel in 25.0 44 0.00095 27.5 1.5 39 187-237 69-107 (113)
239 TIGR01562 FdhE formate dehydro 25.0 38 0.00082 33.0 1.3 26 186-217 208-233 (305)
240 PRK10996 thioredoxin 2; Provis 24.9 39 0.00085 28.3 1.3 32 189-220 3-34 (139)
241 cd00189 TPR Tetratricopeptide 24.7 1.1E+02 0.0024 20.7 3.5 32 11-42 35-66 (100)
242 PRK06266 transcription initiat 24.7 38 0.00081 30.2 1.2 30 190-220 119-148 (178)
243 PF10041 DUF2277: Uncharacteri 24.6 2.2E+02 0.0047 22.3 5.1 52 70-122 6-61 (78)
244 PF05191 ADK_lid: Adenylate ki 24.6 35 0.00075 22.5 0.7 17 209-225 2-18 (36)
245 PRK11447 cellulose synthase su 24.4 2.1E+02 0.0045 32.6 7.2 38 10-47 62-99 (1157)
246 KOG2076 RNA polymerase III tra 24.4 2.3E+02 0.0049 31.6 7.0 43 8-50 137-179 (895)
247 PF13546 DDE_5: DDE superfamil 24.4 37 0.0008 31.5 1.1 75 12-95 4-78 (273)
248 CHL00033 ycf3 photosystem I as 24.3 2.6E+02 0.0057 23.5 6.4 36 7-42 32-67 (168)
249 smart00748 HEPN Higher Eukaryt 24.1 1.2E+02 0.0027 24.0 4.1 32 8-39 2-33 (113)
250 PF01485 IBR: IBR domain; Int 24.0 39 0.00085 23.7 1.0 29 190-218 20-50 (64)
251 smart00745 MIT Microtubule Int 24.0 1.9E+02 0.0041 21.4 4.8 34 6-39 4-37 (77)
252 PF06467 zf-FCS: MYM-type Zinc 23.9 33 0.00073 22.6 0.6 32 208-241 6-38 (43)
253 PRK02603 photosystem I assembl 23.8 2.3E+02 0.0051 24.0 6.0 38 7-44 32-69 (172)
254 TIGR00373 conserved hypothetic 23.4 39 0.00085 29.4 1.0 31 189-220 110-140 (158)
255 COG4888 Uncharacterized Zn rib 23.4 55 0.0012 26.8 1.8 37 186-225 22-62 (104)
256 cd02684 MIT_2 MIT: domain cont 23.3 1.7E+02 0.0036 22.2 4.4 34 6-39 2-35 (75)
257 PF13424 TPR_12: Tetratricopep 23.1 1.4E+02 0.0031 21.5 3.9 30 10-39 46-75 (78)
258 PF12057 DUF3538: Domain of un 23.0 75 0.0016 26.8 2.6 61 51-122 3-67 (120)
259 COG1645 Uncharacterized Zn-fin 23.0 60 0.0013 27.8 2.0 33 188-225 28-61 (131)
260 cd02683 MIT_1 MIT: domain cont 22.8 1.8E+02 0.0039 22.2 4.5 33 7-39 3-35 (77)
261 PF08782 c-SKI_SMAD_bind: c-SK 22.8 41 0.00088 27.3 0.9 44 194-242 12-60 (96)
262 PF15616 TerY-C: TerY-C metal 22.7 50 0.0011 28.2 1.5 39 190-247 79-117 (131)
263 PRK02603 photosystem I assembl 22.7 3.5E+02 0.0075 22.9 6.9 34 10-43 72-105 (172)
264 PF08271 TF_Zn_Ribbon: TFIIB z 22.6 41 0.00089 22.6 0.8 25 190-215 2-26 (43)
265 CHL00033 ycf3 photosystem I as 22.6 1.7E+02 0.0036 24.7 4.8 35 10-44 72-106 (168)
266 COG5010 TadD Flp pilus assembl 22.6 1.6E+02 0.0034 28.1 4.9 38 10-47 134-171 (257)
267 PF04216 FdhE: Protein involve 22.5 49 0.0011 31.4 1.6 26 187-218 196-221 (290)
268 PRK12366 replication factor A; 22.4 53 0.0011 35.0 1.9 28 186-217 530-557 (637)
269 PRK03681 hypA hydrogenase nick 22.4 1E+02 0.0022 25.4 3.2 28 188-218 70-97 (114)
270 COG2015 Alkyl sulfatase and re 22.2 1.5E+02 0.0033 31.1 5.0 40 10-49 452-491 (655)
271 PRK10803 tol-pal system protei 21.8 2.6E+02 0.0055 26.3 6.3 67 14-101 184-251 (263)
272 COG3629 DnrI DNA-binding trans 21.7 1.3E+02 0.0028 28.9 4.3 72 11-104 154-225 (280)
273 smart00685 DM14 Repeats in fly 21.6 91 0.002 23.0 2.5 32 11-42 9-40 (59)
274 KOG0550 Molecular chaperone (D 21.4 4.5E+02 0.0097 27.1 8.0 35 8-42 247-281 (486)
275 COG1579 Zn-ribbon protein, pos 21.2 46 0.00099 31.3 1.0 29 189-218 198-231 (239)
276 PF13248 zf-ribbon_3: zinc-rib 21.1 34 0.00074 20.7 0.1 22 190-217 4-25 (26)
277 COG3063 PilF Tfp pilus assembl 21.1 5.6E+02 0.012 24.3 8.1 91 10-102 69-174 (250)
278 PRK11189 lipoprotein NlpI; Pro 20.9 3.5E+02 0.0076 25.4 7.1 34 9-42 235-268 (296)
279 PF08209 Sgf11: Sgf11 (transcr 20.9 45 0.00098 21.7 0.7 15 208-222 4-18 (33)
280 COG1516 FliS Flagellin-specifi 20.9 1.9E+02 0.0042 24.7 4.7 34 8-41 29-62 (132)
281 PF08646 Rep_fac-A_C: Replicat 20.8 48 0.0011 27.9 1.1 30 186-218 16-47 (146)
282 PF04733 Coatomer_E: Coatomer 20.7 3.2E+02 0.0068 26.0 6.7 31 13-43 204-234 (290)
283 smart00731 SprT SprT homologue 20.7 57 0.0012 27.7 1.5 35 185-219 109-144 (146)
284 PRK09782 bacteriophage N4 rece 20.6 3.8E+02 0.0083 30.3 8.2 30 15-44 614-643 (987)
285 COG1729 Uncharacterized protei 20.5 2.8E+02 0.0061 26.5 6.2 33 10-42 141-173 (262)
286 PF14938 SNAP: Soluble NSF att 20.2 3.1E+02 0.0066 25.6 6.5 48 13-60 199-246 (282)
287 cd02681 MIT_calpain7_1 MIT: do 20.1 2.6E+02 0.0056 21.4 4.9 33 8-40 4-36 (76)
288 PRK03564 formate dehydrogenase 20.1 54 0.0012 31.9 1.3 26 186-217 210-235 (309)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-32 Score=263.42 Aligned_cols=165 Identities=27% Similarity=0.376 Sum_probs=131.2
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cccC----
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTKI---- 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~~---- 139 (317)
.+|||+||||+++| +.+|||+|||+||++||||+|+ +++|+++|++|+|||+|||||+||+.||+.... +...
T Consensus 3 ~~dyYeiLGV~k~A-s~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 3 KRDYYEILGVSKDA-SEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred ccchhhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 46999999999998 7899999999999999999999 889999999999999999999999999987653 1111
Q ss_pred --------CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccc
Q 021106 140 --------DLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLR 210 (317)
Q Consensus 140 --------~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~ 210 (317)
++.++|+++|+++.+ ++++++. ..++.|+.+.+. ||.++..+|.+.++|++ ...
T Consensus 82 ~g~~~fgg~~~DIF~~~FgGg~~---~~~~~~~---------~~rG~Dl~~~l~isleEa~~G~~~~i~~~~-----~~~ 144 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFGGGGG---GRRRPNR---------PRRGADLRYNLEITLEEAVFGVKKEIRVTR-----SVT 144 (371)
T ss_pred CCcCCCCCCHHHHHHHhhcCCCc---ccCCCCC---------cccCCceEEEEEeEhhhhccCceeeEecce-----eeE
Confidence 133344555543222 1122222 236789999998 99999999999999998 689
Q ss_pred cCCCCCCeeecc-cCCCCCccCCCCeeEecc--cceecccc
Q 021106 211 CENCKRGFHAAL-VPNLPPLVSGKDAYYCCW--GFFPLGFV 248 (317)
Q Consensus 211 C~~C~~~F~A~~-vp~~Pp~v~G~~~~~c~w--gffp~gf~ 248 (317)
|.+|++++-.-. -|...+.|+|+++..... |+|-+.-+
T Consensus 145 C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~ 185 (371)
T COG0484 145 CSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQT 185 (371)
T ss_pred CCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEE
Confidence 999999964332 223457899999988888 99998887
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=6.9e-26 Score=221.58 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=114.8
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc--c---C
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT--K---I 139 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~--~---~ 139 (317)
.|||+||||+++| +.+|||+|||+||++||||+|+ ++.|+++|++|++||+||||+++|+.||+.... +. . .
T Consensus 3 ~dyY~vLgv~~~A-s~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 3 LSYYEILEVEKHS-NQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 6999999999998 7899999999999999999997 477999999999999999999999999986542 11 0 1
Q ss_pred CCCcCC-------CcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceeccccccc
Q 021106 140 DLTTHS-------DSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRC 211 (317)
Q Consensus 140 ~~~~~~-------~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C 211 (317)
++.+++ +.+|++++ +..++ .....+.|+.+.+. ||.+++.||.+.+.|.| ...|
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g~----~~~~~---------~~~~~g~di~~~l~vslee~~~G~~~~i~~~r-----~~~C 143 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFGA----RGSKR---------QKSSIAPDYLQTIELSFKEAVFGCKKTIKVQY-----QSVC 143 (369)
T ss_pred ccccchhhHHHHHHhhcCCCC----cccCc---------CCCCCCCCeeEeccccHHHHhCCeEEEEEEEe-----eccC
Confidence 121111 11222110 00000 01124667777887 99999999999999988 5788
Q ss_pred CCCCCCeeecccCCCCCccCCCCeeEeccccee
Q 021106 212 ENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFP 244 (317)
Q Consensus 212 ~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp 244 (317)
..|+++......+...+.|.|+++....-|++-
T Consensus 144 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~ 176 (369)
T PRK14288 144 ESCDGTGAKDKALETCKQCNGQGQVFMRQGFMS 176 (369)
T ss_pred CCCCCcccCCCCCcCCCCCCCCcEEEEEeceEE
Confidence 888887754433334567888886655555553
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=2.6e-25 Score=217.73 Aligned_cols=151 Identities=23% Similarity=0.286 Sum_probs=109.9
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc-----C
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK-----I 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~-----~ 139 (317)
.+|||+||||+++| +.+|||+|||+||++||||+|+++.|+++|++|++||+||||++||+.||+.... +.. .
T Consensus 3 ~~dyY~~Lgv~~~a-~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 3 KKDYYEVLGVSKTA-SEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 36999999999998 7899999999999999999998888999999999999999999999999986532 110 0
Q ss_pred CCC------------------cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEee
Q 021106 140 DLT------------------THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEY 200 (317)
Q Consensus 140 ~~~------------------~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey 200 (317)
+++ ++++++|+++ .. +. ....++.|+.+.+. ||.+++.||.+.+.|
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-----~~-~~---------~~~~~g~di~~~l~ltlee~~~G~~~~i~~ 146 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-----KS-DY---------QRSTKGQSVSLDIYLTFKELLFGVDKIIEL 146 (372)
T ss_pred CCCccccccccccccccccchhhhhhhcCCC-----cc-CC---------CCcCCCCCeEEEeeccHHHhhCCeeEEEEE
Confidence 001 1111222210 00 00 01125678888888 999999999999999
Q ss_pred cceecccccccCCCCCCeeecc-cCCCCCccCCCCeeE
Q 021106 201 PRVYENCCLRCENCKRGFHAAL-VPNLPPLVSGKDAYY 237 (317)
Q Consensus 201 ~r~y~~~~l~C~~C~~~F~A~~-vp~~Pp~v~G~~~~~ 237 (317)
.+ ...|..|+++..... -+...+.|.|+++..
T Consensus 147 ~~-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 179 (372)
T PRK14296 147 DL-----LTNCSKCFGSGAESNSDIHICNNCHGTGEVL 179 (372)
T ss_pred ee-----eeccCCCCCCccCCCCCCccCCCCCCCceEE
Confidence 87 578888888774321 122356777877543
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=7.6e-25 Score=214.49 Aligned_cols=167 Identities=25% Similarity=0.344 Sum_probs=115.9
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----c-
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----K- 138 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~- 138 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+ .+.|+++|++|++||+||||+.+|+.||+.... +. +
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (372)
T PRK14286 3 ERSYYDILGVSKSA-NDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF 81 (372)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC
Confidence 36999999999998 7899999999999999999997 467999999999999999999999999986431 10 0
Q ss_pred --C----------CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceec
Q 021106 139 --I----------DLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYE 205 (317)
Q Consensus 139 --~----------~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~ 205 (317)
. ++.++++.||++++.......+. ....++.|+.+.+. ||.+++.||.+.+.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~---------~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r--- 149 (372)
T PRK14286 82 GQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRR---------SGPQRGSDLRYNLEVSLEDAALGREYKIEIPR--- 149 (372)
T ss_pred CCCCcccccccccchhhHHHHhhCCCccCCCccccc---------CCCCCCCCeeEEEEEEHHHHhCCeeEEEEeec---
Confidence 0 01122333444211000000000 11235678888888 99999999999999988
Q ss_pred ccccccCCCCCCeeeccc-CCCCCccCCCCeeEecccceeccc
Q 021106 206 NCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPLGF 247 (317)
Q Consensus 206 ~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~gf 247 (317)
...|..|.++...... +...+.|.|+++..-..|+|.+..
T Consensus 150 --~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~ 190 (372)
T PRK14286 150 --LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVAT 190 (372)
T ss_pred --cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEE
Confidence 5788888887643211 223567777775544445554333
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2e-24 Score=211.82 Aligned_cols=152 Identities=29% Similarity=0.379 Sum_probs=114.4
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc-------
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT------- 137 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~------- 137 (317)
..|||+||||+++| +.+|||++||+||++||||+|+.+.++++|++|++||++||||.+|+.||+.... +.
T Consensus 4 ~~d~y~iLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDA-SVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCC-CHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 46999999999998 7899999999999999999998888999999999999999999999999986532 11
Q ss_pred ---c---CCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccc
Q 021106 138 ---K---IDLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLR 210 (317)
Q Consensus 138 ---~---~~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~ 210 (317)
. .++.++++.||++++ ++ ++. ....+.|+.+.+. ||.+++.||.+.+.|.+ ...
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~---~~--~~~---------~~~~g~di~~~l~vslee~~~G~~~~i~~~r-----~~~ 143 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGG---RR--GRM---------GPRRGSDLRYDLYITLEEAAFGVRKDIDVPR-----AER 143 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCC---cc--CCC---------CCCCCCCEEEEEEEEHHHhhCCeEEEEEEEe-----ecc
Confidence 0 012233444554311 00 000 1125678888888 99999999999999988 588
Q ss_pred cCCCCCCeeeccc-CCCCCccCCCCeeE
Q 021106 211 CENCKRGFHAALV-PNLPPLVSGKDAYY 237 (317)
Q Consensus 211 C~~C~~~F~A~~v-p~~Pp~v~G~~~~~ 237 (317)
|..|.++...... +...+.|.|+++..
T Consensus 144 C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 171 (377)
T PRK14298 144 CSTCSGTGAKPGTSPKRCPTCGGTGQVT 171 (377)
T ss_pred CCCCCCCcccCCCCCCcCCCCCCccEEE
Confidence 9999987754322 23457788888544
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.2e-24 Score=212.52 Aligned_cols=170 Identities=25% Similarity=0.347 Sum_probs=114.5
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccCc-----ccc-
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-----FTK- 138 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-----~~~- 138 (317)
.+|||+||||+++| +.+|||+|||+||++||||+|+ ++.|+++|++|++||+||||++||+.||+.... +..
T Consensus 8 ~~Dyy~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 8 EKDFYKELGVSSDA-SAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred ccCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 36999999999998 7799999999999999999997 467999999999999999999999999986431 110
Q ss_pred -----CCCCcCC----------CcccCC------CC----CCC-CCCCCCCCCCCCCCCCCCCCCcccccccc-cceecc
Q 021106 139 -----IDLTTHS----------DSMHQS------NK----LPV-RRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTAC 191 (317)
Q Consensus 139 -----~~~~~~~----------~~~~~~------~~----~p~-~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC 191 (317)
.++.++. ..+|++ +. |.. +.... .. .......++.|+.+.+. ||.+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~-~~----~~~~~~~~g~di~~~l~ltLee~~ 161 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGG-GS----ARPSRPRRGNDLETETTLDFVEAA 161 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCC-cc----cccCCCCCCCCeEEEEEEEHHHHh
Confidence 0001000 001100 00 000 00000 00 00011235678888888 999999
Q ss_pred cCceeEEeecceecccccccCCCCCCeeecc-cCCCCCccCCCCeeEecccceecc
Q 021106 192 PYCYILYEYPRVYENCCLRCENCKRGFHAAL-VPNLPPLVSGKDAYYCCWGFFPLG 246 (317)
Q Consensus 192 ~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~-vp~~Pp~v~G~~~~~c~wgffp~g 246 (317)
.+|.+.+.+.+ ...|+.|+++..... -+...+.|.|+++..-..|+|-+.
T Consensus 162 ~G~~~~v~~~~-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~ 212 (392)
T PRK14279 162 KGVTMPLRLTS-----PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFS 212 (392)
T ss_pred CCeEEEEeeec-----cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEE
Confidence 99999999987 588999988775432 123456788887665555554333
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2e-24 Score=211.49 Aligned_cols=153 Identities=29% Similarity=0.370 Sum_probs=113.3
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----cC-
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----KI- 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~~- 139 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+.+.|+++|++|++||++||||.+|+.||+.... +. +.
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (371)
T PRK14287 3 KRDYYEVLGVDRNA-SVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG 81 (371)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC
Confidence 36999999999998 7799999999999999999998888999999999999999999999999986532 11 10
Q ss_pred -----CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCC
Q 021106 140 -----DLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCEN 213 (317)
Q Consensus 140 -----~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~ 213 (317)
++.++++.||++++ + .+ .+. ...++.|+.+.+. ||.+++.+|.+.+.|.| ...|..
T Consensus 82 ~~~f~~~~d~f~~~fgg~~-~-~~--~~~---------~~~~g~d~~~~l~vslee~~~G~~~~i~~~r-----~~~C~~ 143 (371)
T PRK14287 82 AGDFGGFSDIFDMFFGGGG-G-RR--NPN---------APRQGADLQYTMTLEFKEAVFGKETEIEIPR-----EETCGT 143 (371)
T ss_pred CccccchHHHHHhhhcccc-C-CC--CCC---------CCCCCCCEEEEEEEEHHHhcCCeEEEEEEee-----eccCCC
Confidence 11233444554321 0 00 000 1125678888888 99999999999999988 588999
Q ss_pred CCCCeeecc-cCCCCCccCCCCeeE
Q 021106 214 CKRGFHAAL-VPNLPPLVSGKDAYY 237 (317)
Q Consensus 214 C~~~F~A~~-vp~~Pp~v~G~~~~~ 237 (317)
|.++..... .+...+.|.|+++..
T Consensus 144 C~G~G~~~~~~~~~C~~C~G~G~~~ 168 (371)
T PRK14287 144 CHGSGAKPGTKPETCSHCGGSGQLN 168 (371)
T ss_pred CCCcccCCCCCCcccCCCCCEEEEE
Confidence 988764321 122456788887543
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.90 E-value=2.7e-24 Score=213.40 Aligned_cols=145 Identities=23% Similarity=0.294 Sum_probs=111.2
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----cCC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----KID 140 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~~~ 140 (317)
..|||+||||+++| +.+|||+|||+||++||||+|++ .++|++|++||+|||||.+|+.||+.... +. ..+
T Consensus 27 ~~d~Y~vLGV~~~A-s~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d 102 (421)
T PTZ00037 27 NEKLYEVLNLSKDC-TTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPAD 102 (421)
T ss_pred chhHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcc
Confidence 46999999999998 78999999999999999999863 58999999999999999999999986532 11 112
Q ss_pred CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCCCCCCee
Q 021106 141 LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 141 ~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~ 219 (317)
+.++++.+|+++. +. . ...++.|+.+.+. ||.+++.||.+.+.|.+ .+.|..|.++.-
T Consensus 103 ~~d~f~~~Fggg~----~~---~---------~~~rg~di~~~l~vtLee~~~G~~~~i~~~r-----~~~C~~C~G~G~ 161 (421)
T PTZ00037 103 ASDLFDLIFGGGR----KP---G---------GKKRGEDIVSHLKVTLEQIYNGAMRKLAINK-----DVICANCEGHGG 161 (421)
T ss_pred hhhhHHHhhcccc----cc---c---------cccCCCCEEEEeeeeHHHHhCCCceEEEeec-----cccccccCCCCC
Confidence 3334455555321 00 0 0124677888887 99999999999999988 689999999885
Q ss_pred ecccCCCCCccCCCCe
Q 021106 220 AALVPNLPPLVSGKDA 235 (317)
Q Consensus 220 A~~vp~~Pp~v~G~~~ 235 (317)
....+...+.|+|+++
T Consensus 162 ~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 162 PKDAFVDCKLCNGQGI 177 (421)
T ss_pred CCCCCccCCCCCCCCe
Confidence 4333345578899985
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=5.3e-24 Score=208.06 Aligned_cols=160 Identities=28% Similarity=0.379 Sum_probs=114.1
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc-C----
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK-I---- 139 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~-~---- 139 (317)
.|||+||||+++| +.+|||+|||+|+++||||+|+. +.|+++|++|++||+||+|+.+|+.||+.... +.. .
T Consensus 3 ~d~y~iLgv~~~a-~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 3 RDYYEILGLSKGA-SKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 6999999999998 78999999999999999999974 67889999999999999999999999986532 110 0
Q ss_pred ---C----------CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceec
Q 021106 140 ---D----------LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYE 205 (317)
Q Consensus 140 ---~----------~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~ 205 (317)
+ +.+++++||+++.. ..+. ....++.|+.+.+. ||++++.+|.+.+.|.|
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~----~~~~---------~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r--- 145 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG----QDKN---------RKHEKGQDLTYQIEISLEDAYLGYKNNINITR--- 145 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcC----CCCC---------cCCCCCCCEEEEEEEEHHHhhCCeEEEEEeee---
Confidence 0 01112233332100 0000 01125678888888 99999999999999988
Q ss_pred ccccccCCCCCCeeeccc-CCCCCccCCCCeeEecccceec
Q 021106 206 NCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPL 245 (317)
Q Consensus 206 ~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~ 245 (317)
...|..|+++...... +...+.|.|+++..-.-|||-+
T Consensus 146 --~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~ 184 (365)
T PRK14285 146 --NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRV 184 (365)
T ss_pred --cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEE
Confidence 5888888887744221 2245678888765544455533
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=5.9e-24 Score=208.59 Aligned_cols=152 Identities=24% Similarity=0.297 Sum_probs=110.1
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCcccc-----CC-
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTK-----ID- 140 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~~-----~~- 140 (317)
.|||+||||+++| +.+|||+|||+||++||||+|+++.|+++|++|++||+||||+.+|+.||+....+.. .+
T Consensus 3 ~d~y~iLgv~~~a-~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 3 RDYYGLLGVSRNA-SDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCcceecCCCCCC-CHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 6999999999998 7899999999999999999999888999999999999999999999999986532110 01
Q ss_pred ------CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCC
Q 021106 141 ------LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCEN 213 (317)
Q Consensus 141 ------~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~ 213 (317)
+.++++.||++++ .+ .++ .....++.|+.+.+. ||.+++.+|.+.+.|.+ ...|+.
T Consensus 82 ~~~f~~~~d~f~~ffgg~g---~~-~~~--------~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~-----~~~C~~ 144 (378)
T PRK14278 82 GGGFGGLGDVFEAFFGGGA---AS-RGP--------RGRVRPGSDSLLRMRLDLEECATGVTKQVTVDT-----AVLCDR 144 (378)
T ss_pred CcCcCchhHHHHHHhCCCC---CC-CCC--------ccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEe-----eccCCC
Confidence 1122334444211 00 000 001225677888887 99999999999999988 578888
Q ss_pred CCCCeeeccc-CCCCCccCCCCee
Q 021106 214 CKRGFHAALV-PNLPPLVSGKDAY 236 (317)
Q Consensus 214 C~~~F~A~~v-p~~Pp~v~G~~~~ 236 (317)
|+++...... +...+.|.|+++.
T Consensus 145 C~G~G~~~~~~~~~C~~C~G~G~~ 168 (378)
T PRK14278 145 CHGKGTAGDSKPVTCDTCGGRGEV 168 (378)
T ss_pred CcCccCCCCCCceecCCccCceEE
Confidence 8877643211 1234567777643
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=4.2e-24 Score=209.77 Aligned_cols=153 Identities=25% Similarity=0.322 Sum_probs=111.5
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----c--
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----K-- 138 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~-- 138 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||+.... +. .
T Consensus 3 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDA-SQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 36999999999998 7899999999999999999999888999999999999999999999999986532 11 0
Q ss_pred CC------------CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceec
Q 021106 139 ID------------LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYE 205 (317)
Q Consensus 139 ~~------------~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~ 205 (317)
.+ +.++++.||++++ ..+++ ....++.|+.+.+. ||.+++.||.+.+.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~----~~~~~---------~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~--- 145 (380)
T PRK14276 82 GGFGGFDGSGGFGGFEDIFSSFFGGGG----ARRNP---------NAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNR--- 145 (380)
T ss_pred CCCCCccccccccchhhHHHHHhCccc----cccCc---------CCCCCCCCEEEEEEEEHHHhcCCeEEEEEeec---
Confidence 00 1112233343211 00000 01125678888888 99999999999999988
Q ss_pred ccccccCCCCCCeeeccc-CCCCCccCCCCeeE
Q 021106 206 NCCLRCENCKRGFHAALV-PNLPPLVSGKDAYY 237 (317)
Q Consensus 206 ~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~ 237 (317)
...|..|+++...... +...+.|.|+++..
T Consensus 146 --~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 176 (380)
T PRK14276 146 --EATCHTCNGSGAKPGTSPVTCGKCHGSGVIT 176 (380)
T ss_pred --cccCCCCcCcccCCCCCCccCCCCCCeeEEE
Confidence 5889999887743211 22456788887543
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2e-23 Score=204.28 Aligned_cols=155 Identities=24% Similarity=0.300 Sum_probs=110.8
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhccccCcc-c-----
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYDHELSLF-T----- 137 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~-~----- 137 (317)
..|||+||||+++| +.+|||+|||+|+++||||+|+. ..|+++|++|++||+||||+.+|+.||+..... .
T Consensus 3 ~~d~y~~lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 3 KKDYYEILGVSRNA-TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 36999999999998 78999999999999999999974 568899999999999999999999999865321 0
Q ss_pred ---cCC-CC------------cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEee
Q 021106 138 ---KID-LT------------THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEY 200 (317)
Q Consensus 138 ---~~~-~~------------~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey 200 (317)
..+ +. ++++.+|++++ ....++ ....++.|+.+.+. ||.+++.||.+.+.|
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~---------~~~~~g~di~~~l~~slee~~~G~~~~i~~ 149 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERR---TQEEQR---------EYARRGEDIRYEIEVTLSDLINGAEIPVEY 149 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccC---Cccccc---------CCCCCCCCeEEEEEEEHHHhcCCeEEEEEe
Confidence 001 01 11122222110 000000 11235678888888 999999999999999
Q ss_pred cceecccccccCCCCCCeeeccc-CCCCCccCCCCeeEe
Q 021106 201 PRVYENCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYC 238 (317)
Q Consensus 201 ~r~y~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c 238 (317)
.| ...|..|.++...... +...+.|.|+++...
T Consensus 150 ~r-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 183 (369)
T PRK14282 150 DR-----YETCPHCGGTGVEPGSGYVTCPKCHGTGRIRE 183 (369)
T ss_pred ee-----cccCCCCCccCCCCCCCCcCCCCCCCcCEEEE
Confidence 88 5889999987743221 234577888886543
No 13
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2e-23 Score=205.72 Aligned_cols=167 Identities=24% Similarity=0.320 Sum_probs=115.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-c-cc-----
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-F-TK----- 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~-~~----- 138 (317)
.|||+||||+++| +.+|||+|||+||++||||+|+. +.|+++|++|++||++|+|+.+|+.||+.... + .+
T Consensus 1 ~d~y~iLgv~~~a-~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~ 79 (391)
T PRK14284 1 MDYYTILGVSKTA-SPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFG 79 (391)
T ss_pred CCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcC
Confidence 3999999999998 78999999999999999999984 67899999999999999999999999986532 1 10
Q ss_pred -CCCC---------------------cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCce
Q 021106 139 -IDLT---------------------THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCY 195 (317)
Q Consensus 139 -~~~~---------------------~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~ 195 (317)
.++. ++++.+|++.+.......++ ....++.|+.+.+. ||++++.+|.
T Consensus 80 ~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~---------~~~~~g~d~~~~l~vslee~~~G~~ 150 (391)
T PRK14284 80 GAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGP---------AGARQGASKKVHITLSFEEAAKGVE 150 (391)
T ss_pred CCCcCcccchhhhccccccccccccccchhhhccCccccccccccC---------CCcCCCCCeEEEEEEEHHHHhCCee
Confidence 0110 01111222100000000000 01125677888888 9999999999
Q ss_pred eEEeecceecccccccCCCCCCeeeccc-CCCCCccCCCCeeEecccceecccc
Q 021106 196 ILYEYPRVYENCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPLGFV 248 (317)
Q Consensus 196 ~~~ey~r~y~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~gf~ 248 (317)
+.+.+.+ ...|..|+++...... +...+.|.|++...-..|+|-+..+
T Consensus 151 ~~i~~~r-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~ 199 (391)
T PRK14284 151 KELLVSG-----YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMAST 199 (391)
T ss_pred EEEEEee-----eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEE
Confidence 9999987 5888888887743211 2235678888765555566554443
No 14
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1e-23 Score=206.70 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=111.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCcc-c----cC--
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLF-T----KI-- 139 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~-~----~~-- 139 (317)
.|||+||||+++| +.+|||+|||+|+++||||+|+.+.|+++|++|++||+|||||.+|+.||+..... . ..
T Consensus 4 ~~~y~iLgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 4 RDYYEVLGVSKSA-SKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 6999999999998 78999999999999999999988889999999999999999999999999865321 0 00
Q ss_pred ---------CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceeccccc
Q 021106 140 ---------DLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCL 209 (317)
Q Consensus 140 ---------~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l 209 (317)
++.++++.||++++ +.+++ ....++.|+.+.+. ||.+++.||.+.+.|.| ..
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~----~~~~~---------~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r-----~~ 144 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGG----RRRDP---------NAPRQGADLQYTMTLTFEEAVFGKEKEIEIPK-----EE 144 (376)
T ss_pred CCCCccccccchhhHHHHhCCcc----ccCcc---------cccccccCEEEEEEEEHHHHhCCceeEEEEee-----ec
Confidence 01122333443211 00000 01125678888888 99999999999999988 57
Q ss_pred ccCCCCCCeeeccc-CCCCCccCCCCee
Q 021106 210 RCENCKRGFHAALV-PNLPPLVSGKDAY 236 (317)
Q Consensus 210 ~C~~C~~~F~A~~v-p~~Pp~v~G~~~~ 236 (317)
.|..|+++...... +...+.|.|+++.
T Consensus 145 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 172 (376)
T PRK14280 145 TCDTCHGSGAKPGTSKETCSHCGGSGQV 172 (376)
T ss_pred cCCCCCCcccCCCCCCccCCCCCCEEEE
Confidence 88888887744321 2235667777743
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.7e-23 Score=205.04 Aligned_cols=162 Identities=30% Similarity=0.427 Sum_probs=113.8
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc----C
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK----I 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~----~ 139 (317)
..|||+||||+++| +.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+.... +.. .
T Consensus 3 ~~~~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~ 81 (373)
T PRK14301 3 QRDYYEVLGVSRDA-SEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFG 81 (373)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCC
Confidence 36999999999998 78999999999999999999974 67889999999999999999999999986532 110 0
Q ss_pred CCC----------cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccc
Q 021106 140 DLT----------THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCC 208 (317)
Q Consensus 140 ~~~----------~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~ 208 (317)
++. ++++.+|+.++. . ..+. .....+.|+.+.+. ||.+++.||.+.+.|.+ .
T Consensus 82 g~~~~~~~~~~f~d~f~~~fg~g~~--~-~~~~---------~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r-----~ 144 (373)
T PRK14301 82 GFSSAEDIFSHFSDIFGDLFGFSGG--G-SRRG---------PRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPK-----N 144 (373)
T ss_pred CcccccccccchHHHHHHHhhccCc--c-cccC---------CCCCCCCCEEEEEeccHHHHhCCceEEEEeee-----c
Confidence 111 111222221110 0 0000 01235678888888 99999999999999988 5
Q ss_pred cccCCCCCCeeeccc-CCCCCccCCCCeeEecccceec
Q 021106 209 LRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPL 245 (317)
Q Consensus 209 l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~ 245 (317)
..|..|.++...... +...+.|.|+++..-.-|||-+
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~ 182 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQI 182 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEE
Confidence 788888887754321 2245678888765544455433
No 16
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-23 Score=199.41 Aligned_cols=155 Identities=24% Similarity=0.232 Sum_probs=115.7
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----cCC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----KID 140 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~~~ 140 (317)
...||+||+|+++| +.+||||+||+||++||||||++ +.++|++|++||+|||||++|..||+.... .. +.+
T Consensus 3 ~~~~y~il~v~~~A-s~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g 79 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA-SEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG 79 (337)
T ss_pred ccccceeeccCCCc-CHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence 46899999999998 67999999999999999999976 889999999999999999999999997632 11 112
Q ss_pred CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCCCCCCee
Q 021106 141 LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 141 ~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~ 219 (317)
++. +++||+.++...+..+ ++.|+...+. |..+...+-.+...+.+ ...|..|++..-
T Consensus 80 ~~~-f~~~F~~g~~~~~~~~---------------rg~~~~~~~~~~Le~~y~G~s~kl~l~~-----~~iCs~C~GsGg 138 (337)
T KOG0712|consen 80 FGG-FSQFFGFGGNGGRGRQ---------------RGKDVVHQLKVTLEELYMGKSKKLFLSR-----NFICSKCSGSGG 138 (337)
T ss_pred Ccc-HHHhccCCCcCccccc---------------cCCCceEEEEEEHHHhhcCCccceeccc-----CccCCcCCCCCC
Confidence 222 3445542222111111 1456666776 88888888777777766 689999997653
Q ss_pred ecccCCCCCccCCCCeeEeccccee
Q 021106 220 AALVPNLPPLVSGKDAYYCCWGFFP 244 (317)
Q Consensus 220 A~~vp~~Pp~v~G~~~~~c~wgffp 244 (317)
-...-++++.|+|+++..-.|-+-|
T Consensus 139 ksg~~~~C~~C~GsGv~~~~~~~gP 163 (337)
T KOG0712|consen 139 KSGSAPKCTTCRGSGVQTRTRQMGP 163 (337)
T ss_pred CCCCCCCCCCCCCCCceeEEEeccc
Confidence 3322224678999999998888888
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=3.6e-23 Score=203.78 Aligned_cols=157 Identities=25% Similarity=0.361 Sum_probs=105.3
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCccccCCC----
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTKIDL---- 141 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~~---- 141 (317)
.|||+||||+++| +.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+.+..++..++
T Consensus 9 ~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 9 KDYYKVLGVPKDA-TEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred cCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 5999999999998 77999999999999999999974 57899999999999999999999999982211111000
Q ss_pred -----CcCC---CcccCC----CC-----------CCC-CCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCcee
Q 021106 142 -----TTHS---DSMHQS----NK-----------LPV-RRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYI 196 (317)
Q Consensus 142 -----~~~~---~~~~~~----~~-----------~p~-~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~ 196 (317)
+++. ..+|+. ++ |.. +.... ......++.|+.+.+. ||.+++.+|.+
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~--------~~~~~~~g~di~~~l~lsLee~~~G~~k 159 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG--------RRTQPRRGADVESEVTLSFTEAIDGATV 159 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC--------CCCCCCCCCCEEEEEEEEHHHHhCCceE
Confidence 0000 000100 00 000 00000 0011235678888887 99999999999
Q ss_pred EEeecceecccccccCCCCCCeeeccc-CCCCCccCCCCeeE
Q 021106 197 LYEYPRVYENCCLRCENCKRGFHAALV-PNLPPLVSGKDAYY 237 (317)
Q Consensus 197 ~~ey~r~y~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~ 237 (317)
.+.|.| ...|..|.++...... +...+.|.|+++..
T Consensus 160 ~i~~~r-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 196 (389)
T PRK14295 160 PLRLTS-----QAPCPACSGTGAKNGTTPRVCPTCSGTGQVS 196 (389)
T ss_pred EEEeec-----cccCCCCcccccCCCCCCcCCCCCCCEeEEE
Confidence 999987 5778888776644321 22345666766444
No 18
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.2e-23 Score=203.62 Aligned_cols=171 Identities=31% Similarity=0.446 Sum_probs=115.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc-------
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK------- 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~------- 138 (317)
.|||+||||+++| +.++||+|||+||++||||+|+.+.|+++|++|++||+||||+.+|+.||+.... +..
T Consensus 3 ~d~Y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 3 KDYYEILGVSRNA-TQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCHHHhhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 6999999999998 7799999999999999999998888999999999999999999999999986542 110
Q ss_pred -CCCC--------cCCCcc---cC-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeeccee
Q 021106 139 -IDLT--------THSDSM---HQ-SNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVY 204 (317)
Q Consensus 139 -~~~~--------~~~~~~---~~-~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y 204 (317)
..+. +++..+ |+ ++.+......+. . ........++.|+.+.+. ||.+++.+|.+.+.|.|
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~---~-~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r-- 155 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRE---R-RKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPR-- 155 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccc---c-ccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEee--
Confidence 0111 011111 11 000110000000 0 000011235678888888 99999999999999988
Q ss_pred cccccccCCCCCCeeeccc-CCCCCccCCCCeeEecccceeccc
Q 021106 205 ENCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPLGF 247 (317)
Q Consensus 205 ~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~gf 247 (317)
...|..|.++...... +...|.|.|+++..-.-||+-+..
T Consensus 156 ---~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~ 196 (382)
T PRK14291 156 ---YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQ 196 (382)
T ss_pred ---eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEe
Confidence 5788888887643211 224567888876555545554443
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.5e-23 Score=202.29 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=110.7
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-cccC----
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTKI---- 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~~---- 139 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+. +.+++.|++|++||+||+|+.+|+.||+.... +...
T Consensus 3 ~~d~y~~lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 3 KRDYYEILGVTRDA-SEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCChHHHhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 36999999999998 78999999999999999999974 67899999999999999999999999986532 1110
Q ss_pred --CC-------CcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceeccccc
Q 021106 140 --DL-------TTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCL 209 (317)
Q Consensus 140 --~~-------~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l 209 (317)
++ .++++.+|+.++.. ..+.. .....+.|+.+.+. ||.+++.||.+.+.+.+ ..
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g~~~--~~~~~---------~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r-----~~ 145 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFGGGR--RGRSR---------TAVRAGADLRYDLTLPFLEAAFGTEKEIRIQK-----LE 145 (366)
T ss_pred cCccccchhhhhhhHHHhhccCCCc--CCccc---------CCCCCCCCceEEEEeeHHHhcCCeEEEEEeee-----cc
Confidence 11 11122233311000 00000 01124677888887 99999999999999987 57
Q ss_pred ccCCCCCCeeeccc-CCCCCccCCCCeeEecccce
Q 021106 210 RCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFF 243 (317)
Q Consensus 210 ~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgff 243 (317)
.|..|.++...... +...+.|.|+++..-.-|+|
T Consensus 146 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~ 180 (366)
T PRK14294 146 TCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF 180 (366)
T ss_pred cCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE
Confidence 78888776543211 22345666666544444444
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.7e-23 Score=203.03 Aligned_cols=153 Identities=28% Similarity=0.352 Sum_probs=110.3
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc---c---
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT---K--- 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~---~--- 138 (317)
.|||+||||+++| +.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+.... +. +
T Consensus 4 ~d~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 4 KDYYEVLGLEKGA-SDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 6999999999998 77999999999999999999974 67899999999999999999999999986532 11 0
Q ss_pred CCC-----------CcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecc
Q 021106 139 IDL-----------TTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYEN 206 (317)
Q Consensus 139 ~~~-----------~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~ 206 (317)
.++ .+++++||+++. .. ...++. ...++.|+.+.+. ||.+++.||.+.+.|.|
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~-g~-~~~~~~---------~~~kg~di~~~l~vsLee~~~G~~~~i~~~r---- 147 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGF-GS-SSRRRN---------GPQRGADIEYTINLTFEEAVFGVEKEISVTR---- 147 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCc-cc-cccccC---------CCCCCCCEEEEEEEEHHHhcCCeEEEEEeee----
Confidence 011 122333444211 00 000000 1125678888888 99999999999999988
Q ss_pred cccccCCCCCCeeeccc-CCCCCccCCCCee
Q 021106 207 CCLRCENCKRGFHAALV-PNLPPLVSGKDAY 236 (317)
Q Consensus 207 ~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~ 236 (317)
...|..|.++...... +...+.|.|+++.
T Consensus 148 -~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 177 (380)
T PRK14297 148 -NENCETCNGTGAKPGTSPKTCDKCGGTGQI 177 (380)
T ss_pred -eccCCCcccccccCCCcCccCCCccCeEEE
Confidence 5788888887644211 2345677887743
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=9e-23 Score=199.69 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=111.4
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc----C
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK----I 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~----~ 139 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+ .+.|+++|++|++||++|+|+.+|+.||+.... +.. .
T Consensus 3 ~~d~y~iLgv~~~a-s~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 3 KRDYYEVLGVSRNA-SEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCChHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 36999999999998 7899999999999999999997 467889999999999999999999999986532 110 0
Q ss_pred C------CC----cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccc
Q 021106 140 D------LT----THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCC 208 (317)
Q Consensus 140 ~------~~----~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~ 208 (317)
+ +. ++++.+|++++ ++ +. .....+.|+.+.+. ||.++..||.+.+.|.+ .
T Consensus 82 ~~~~~~~~~~~f~~~f~~~fgg~~---~~--~~---------~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r-----~ 142 (371)
T PRK10767 82 GFGGGGGFGDIFGDIFGDIFGGGR---GG--GR---------QRARRGADLRYNMEITLEEAVRGVTKEIRIPT-----L 142 (371)
T ss_pred CCCCccccccchhhhhhhhccCCc---cc--cC---------CCCCCCCCeEEEEEeehHHhhCCeeEEEeeee-----c
Confidence 1 11 11222232110 00 00 01235678888887 99999999999999987 5
Q ss_pred cccCCCCCCeeeccc-CCCCCccCCCCeeEeccccee
Q 021106 209 LRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFP 244 (317)
Q Consensus 209 l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp 244 (317)
..|..|.++...... +...+.|.|+++..-.-|||-
T Consensus 143 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~ 179 (371)
T PRK10767 143 VTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFT 179 (371)
T ss_pred ccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEE
Confidence 778888876643211 123456777765444445543
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=5.4e-23 Score=202.29 Aligned_cols=155 Identities=28% Similarity=0.368 Sum_probs=109.1
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-cccC----
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTKI---- 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~~---- 139 (317)
..|||+||||+++| +.+|||+|||+||++||||+|+. +.|+++|++|++||+||||+.+|+.||+.... +...
T Consensus 4 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 4 KKDYYEILGVDRNA-TEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCHHHhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 36999999999998 78999999999999999999974 67899999999999999999999999985431 1100
Q ss_pred ------CC---------C---cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEee
Q 021106 140 ------DL---------T---THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEY 200 (317)
Q Consensus 140 ------~~---------~---~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey 200 (317)
++ + ++++.+|++. +..+..++ .....++.|+.+.+. ||.+++.||.+.+.|
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~---------~~~~~kg~di~~~l~vtLee~~~G~~~~v~~ 152 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRA---------ETGPQKGADIRYDLELTFEEAAFGTEKEIEV 152 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhccc-ccCCCcCC---------CCCCCCCCCEEEEEEEEHHHHhCCeEEEEEE
Confidence 00 0 0011122210 00000000 001235678888888 999999999999999
Q ss_pred cceecccccccCCCCCCeeeccc-CCCCCccCCCCee
Q 021106 201 PRVYENCCLRCENCKRGFHAALV-PNLPPLVSGKDAY 236 (317)
Q Consensus 201 ~r~y~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~ 236 (317)
.| ...|+.|.++...... +...+.|.|+++.
T Consensus 153 ~r-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 184 (386)
T PRK14277 153 ER-----FEKCDVCKGSGAKPGSKPVTCPVCHGTGQV 184 (386)
T ss_pred Ee-----eccCCCCCCCCcCCCCCCccCCCCCCEEEE
Confidence 88 5889999887744221 2245678888754
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=6.4e-23 Score=200.90 Aligned_cols=167 Identities=24% Similarity=0.317 Sum_probs=120.7
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-ccc-------
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTK------- 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~------- 138 (317)
.|||+||||+++| +.+|||++||+|+++||||+++...++++|++|++||++|+|+.+|+.||+.... +..
T Consensus 3 ~~~y~iLgv~~~a-s~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 3 QDYYQILGVSKTA-SQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 5999999999998 7899999999999999999998778999999999999999999999999996532 110
Q ss_pred C---CCC----cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccc
Q 021106 139 I---DLT----THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLR 210 (317)
Q Consensus 139 ~---~~~----~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~ 210 (317)
. ++. +.+..+|++. +..+...++. ....++.|+...+. ||.+++.||.+.+.|.| ...
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~-~gg~~~~~~~--------~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r-----~~~ 147 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDF-MGGSRRSRPT--------SSKVRGSDLKYNLTINLEEAFHGIEKNISFSS-----EVK 147 (372)
T ss_pred CCCCccccchhhhHHHHHHhh-cCCCCCCCCC--------cCCCCCCCeeEEEEEEHHHHhCCceEEEEeee-----ccc
Confidence 0 000 0011122110 0000000000 01135678888887 99999999999999988 589
Q ss_pred cCCCCCCeeecc-cCCCCCccCCCCeeEecccceecccc
Q 021106 211 CENCKRGFHAAL-VPNLPPLVSGKDAYYCCWGFFPLGFV 248 (317)
Q Consensus 211 C~~C~~~F~A~~-vp~~Pp~v~G~~~~~c~wgffp~gf~ 248 (317)
|+.|.++..... -+...|.|.|+++..+..|||-+..+
T Consensus 148 C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~ 186 (372)
T PRK14300 148 CDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQA 186 (372)
T ss_pred cCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEe
Confidence 999999875432 23356789999988887787765554
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.3e-22 Score=199.11 Aligned_cols=156 Identities=23% Similarity=0.306 Sum_probs=109.3
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc----cccC--
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL----FTKI-- 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~----~~~~-- 139 (317)
..|||+||||+++| +.+|||++||+||++||||+|+.+.|+++|++|++||++|||+.+|+.||+.... +...
T Consensus 4 ~~d~y~~Lgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 4 KRDYYEVLGVDRNA-DKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred cCChHHhhCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 46999999999998 7899999999999999999998888999999999999999999999999985431 1100
Q ss_pred ----CCCcCCCcccCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccc
Q 021106 140 ----DLTTHSDSMHQS--NKLPV--RRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLR 210 (317)
Q Consensus 140 ----~~~~~~~~~~~~--~~~p~--~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~ 210 (317)
++...+..++++ ..+.. +...+. ....++.|+.+.+. ||.+++.||.+.+.+.+ ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~---------~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r-----~~~ 148 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSR---------HGPQRGADIYTEVEITLEEAASGVEKDIKVRH-----TKK 148 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCCC---------CCccCCCCeEEEeeeeHHHHhCCcceEEEeee-----ecc
Confidence 000000111000 00000 000000 01124667788887 99999999999999988 478
Q ss_pred cCCCCCCeeeccc-CCCCCccCCCCee
Q 021106 211 CENCKRGFHAALV-PNLPPLVSGKDAY 236 (317)
Q Consensus 211 C~~C~~~F~A~~v-p~~Pp~v~G~~~~ 236 (317)
|+.|.++.-.... +...+.|.|+++.
T Consensus 149 C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (378)
T PRK14283 149 CPVCNGSRAEPGSEVKTCPTCGGTGQV 175 (378)
T ss_pred CCCCCccccCCCCCCccCCCcCCccEE
Confidence 9999887644322 2245678888754
No 25
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.5e-22 Score=199.92 Aligned_cols=163 Identities=25% Similarity=0.349 Sum_probs=111.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc------c
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT------K 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~------~ 138 (317)
.|||+||||+++| +.+|||+|||+|+++||||+|+. ..|++.|++|++||++|+|+.+|+.||+.... +. .
T Consensus 3 ~d~y~iLgv~~~a-~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 3 RDYYEVLGVSRSA-DKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 5999999999998 78999999999999999999974 67889999999999999999999999986532 11 0
Q ss_pred -CC-------CCcCC---CcccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCcccccccc-cceecccCceeEEee
Q 021106 139 -ID-------LTTHS---DSMHQSNKLPVRRSQRP------SSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEY 200 (317)
Q Consensus 139 -~~-------~~~~~---~~~~~~~~~p~~~~~r~------~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey 200 (317)
.+ +.+++ +.+|+++... ...... .............++.|+.+.+. ||.+++.+|.+.+.|
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 160 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARR-GGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCccc-ccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence 00 11111 1334321100 000000 00000000001135678888888 999999999999999
Q ss_pred cceecccccccCCCCCCeeecccCCCCCccCCCCee
Q 021106 201 PRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAY 236 (317)
Q Consensus 201 ~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~ 236 (317)
.| ...|..|.++......+...+.|.|+++.
T Consensus 161 ~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 191 (397)
T PRK14281 161 KK-----QVPCKECNGTGSKTGATETCPTCHGSGEV 191 (397)
T ss_pred Ee-----eecCCCCCCcccCCCCCccCCCCCCCcEE
Confidence 88 57899998877554334455678888753
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.87 E-value=1.6e-22 Score=196.63 Aligned_cols=153 Identities=30% Similarity=0.382 Sum_probs=110.7
Q ss_pred CceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc------cCC
Q 021106 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT------KID 140 (317)
Q Consensus 68 D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~------~~~ 140 (317)
|||+||||+++| +.++||+|||+|+++||||+|+.+.++++|++|++||++|+|+.+|..||+.... +. ..+
T Consensus 1 d~y~~Lgv~~~a-~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDA-SEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 899999999998 7899999999999999999998778999999999999999999999999985432 11 001
Q ss_pred C-----------CcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccc
Q 021106 141 L-----------TTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCC 208 (317)
Q Consensus 141 ~-----------~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~ 208 (317)
+ .++++.||+++... .+. + .....++.|+.+.+. ||.+++.||.+.+.|.| .
T Consensus 80 ~~~~~~~~~~~~~~~f~~~fg~~~g~-~~~-~---------~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r-----~ 143 (354)
T TIGR02349 80 FNGFDIGFFGDFGDIFGDFFGGGGGS-GRR-R---------RSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPR-----K 143 (354)
T ss_pred cCCccccCcCchhhhHHHHhccCccc-Ccc-c---------cCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeec-----C
Confidence 1 11223344321100 000 0 011235677888887 99999999999999988 5
Q ss_pred cccCCCCCCeeeccc-CCCCCccCCCCeeE
Q 021106 209 LRCENCKRGFHAALV-PNLPPLVSGKDAYY 237 (317)
Q Consensus 209 l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~ 237 (317)
..|..|.++...... +...+.|.|+++-.
T Consensus 144 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 173 (354)
T TIGR02349 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVR 173 (354)
T ss_pred CcCCCCCCCCCCCCCCCccCCCCCCeeEEE
Confidence 889999887744322 22456788877544
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.1e-22 Score=194.77 Aligned_cols=167 Identities=26% Similarity=0.278 Sum_probs=115.8
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc--cC--
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP--FADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT--KI-- 139 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~--~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~--~~-- 139 (317)
.|||+||||+++| +.+|||++||+|+++||||+|+.. .|++.|++|++||++|||+.+|..||+.... +. +.
T Consensus 3 ~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~ 81 (365)
T PRK14290 3 KDYYKILGVDRNA-SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF 81 (365)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence 5999999999998 789999999999999999999753 6899999999999999999999999986532 11 00
Q ss_pred ---------CCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceeccccc
Q 021106 140 ---------DLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCL 209 (317)
Q Consensus 140 ---------~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l 209 (317)
++.++++.+|++............. ......+.|+.+.+. ||.+++.||.+.+.+.| ..
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~------~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r-----~~ 150 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQ------QSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRR-----NA 150 (365)
T ss_pred cccccccccchhHHHHHHhcCccccccccccccc------cCCCCCCCCEEEEEEecHHHhcCCEEEEEEeee-----cc
Confidence 1112223344321000000000000 000113567777887 99999999999999987 68
Q ss_pred ccCCCCCCeeecccCCCCCccCCCCeeE--ecccceec
Q 021106 210 RCENCKRGFHAALVPNLPPLVSGKDAYY--CCWGFFPL 245 (317)
Q Consensus 210 ~C~~C~~~F~A~~vp~~Pp~v~G~~~~~--c~wgffp~ 245 (317)
.|+.|.++......+...+.|.|+++.. ..+|+|-+
T Consensus 151 ~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~ 188 (365)
T PRK14290 151 MCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRM 188 (365)
T ss_pred cCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEE
Confidence 9999998876544444567899988533 23455543
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.7e-22 Score=194.03 Aligned_cols=154 Identities=27% Similarity=0.337 Sum_probs=112.2
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCccc-----cCCC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFT-----KIDL 141 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~-----~~~~ 141 (317)
.|||+||||+++| +.++||++||+|++++|||+++...|+++|++|++||++|+|+.+|+.||+...... ...+
T Consensus 2 ~d~y~~Lgv~~~a-~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 2 MDYYELLGVSRTA-SADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 4999999999998 789999999999999999999888899999999999999999999999998653210 0001
Q ss_pred -------CcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCC
Q 021106 142 -------TTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCEN 213 (317)
Q Consensus 142 -------~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~ 213 (317)
.++++.+|++++++..+. . .....+.|+...+. ||.+++.||.+.+.+.+ ...|+.
T Consensus 81 ~~~~~d~~d~f~~~fg~~~~~~~~~--~---------~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r-----~~~C~~ 144 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGGAGFGGGRG--R---------RGPARGDDLETEARITLEQARAGEEVEVEVDR-----LTECEH 144 (371)
T ss_pred CccCCChHHHHHHhhCCCCcCCCCC--c---------ccccCCCCeEEEEeccHHHHcCCeEEEEEEEe-----eecCCC
Confidence 122333444321110000 0 01125667777877 99999999999999988 578999
Q ss_pred CCCCeeecc--cCCCCCccCCCCeeE
Q 021106 214 CKRGFHAAL--VPNLPPLVSGKDAYY 237 (317)
Q Consensus 214 C~~~F~A~~--vp~~Pp~v~G~~~~~ 237 (317)
|.++..... .+..++.|.|+++..
T Consensus 145 C~G~G~~~~~~~~~~C~~C~G~G~~~ 170 (371)
T PRK14292 145 CHGSRTEPGGKPPKTCPTCRGAGAVR 170 (371)
T ss_pred CcccccCCCCCCCccCCCCCCccEEE
Confidence 998775432 133456788887554
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=191.61 Aligned_cols=158 Identities=25% Similarity=0.327 Sum_probs=110.5
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-cccC-C----
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FTKI-D---- 140 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~~~-~---- 140 (317)
.|||+||||++++ +.+|||+|||+|+++||||+|+.+.++++|++|++||++|+|+.+|+.||..... +... +
T Consensus 3 ~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 3 ADYYEILGVSRDA-DKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CChhhhcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 5999999999988 7899999999999999999998888999999999999999999999999985532 1100 0
Q ss_pred -----CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCCC
Q 021106 141 -----LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENC 214 (317)
Q Consensus 141 -----~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C 214 (317)
+.+.+..+|++.+......+. . ......++.++...+. ||.+++.+|.+.+.|.| ...|..|
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~-~------~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r-----~~~C~~C 149 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGR-R------RRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPH-----LETCETC 149 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCcc-c------cccCccCCCCeEEEEEeeHHHHhCCceEEEEeec-----cccCCCC
Confidence 111223344320000000000 0 0001124567777777 99999999999999987 6889999
Q ss_pred CCCeeeccc-CCCCCccCCCCeeE
Q 021106 215 KRGFHAALV-PNLPPLVSGKDAYY 237 (317)
Q Consensus 215 ~~~F~A~~v-p~~Pp~v~G~~~~~ 237 (317)
.++...... +...+.|.|+++..
T Consensus 150 ~G~G~~~~~~~~~C~~C~G~G~~~ 173 (374)
T PRK14293 150 RGSGAKPGTGPTTCSTCGGAGQVR 173 (374)
T ss_pred CCcCCCCCCCCeeCCCCCCcceEE
Confidence 876643322 23456788887543
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.8e-21 Score=188.47 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=109.7
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc-cc----cC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-FT----KI 139 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-~~----~~ 139 (317)
..|||+||||+++| +.+|||++||+||++||||+|+. +.|+++|++|++||++|+|+.+|+.||+.... +. ..
T Consensus 4 ~~~~y~~Lgv~~~a-~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 4 KRDYYEVLGVSKTA-TVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred cCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 36999999999998 78999999999999999999974 57999999999999999999999999986432 11 00
Q ss_pred CC-------CcCC---CcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccc
Q 021106 140 DL-------TTHS---DSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCC 208 (317)
Q Consensus 140 ~~-------~~~~---~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~ 208 (317)
++ .+++ ..+|++..... ......... .......++.|+.+.+. ||.+++.||.+.+.|.+ .
T Consensus 83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~-~~~~~~~~~--~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r-----~ 154 (386)
T PRK14289 83 GFSGEGMSMEDIFSMFGDIFGGHGGGF-GGFGGFGGG--GSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKK-----Y 154 (386)
T ss_pred CCCCCCcChhhhhHHhhhhhcccccCc-ccccccccc--cccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEe-----e
Confidence 11 1111 11122100000 000000000 00011235678888887 99999999999999987 5
Q ss_pred cccCCCCCCeeecc-cCCCCCccCCCCeeE
Q 021106 209 LRCENCKRGFHAAL-VPNLPPLVSGKDAYY 237 (317)
Q Consensus 209 l~C~~C~~~F~A~~-vp~~Pp~v~G~~~~~ 237 (317)
..|..|.++..... .+...+.|.|+++..
T Consensus 155 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 184 (386)
T PRK14289 155 VPCSHCHGTGAEGNNGSETCPTCKGSGSVT 184 (386)
T ss_pred cccCCCCCCCCCCCCCCCcCCCCcCeEEEE
Confidence 88999988774432 223456788887554
No 31
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.1e-21 Score=180.33 Aligned_cols=70 Identities=40% Similarity=0.599 Sum_probs=64.8
Q ss_pred cCccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 64 NNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 64 ~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...+|||+||||+++| +..|||+|||+||++||||||++ |.|.+.|+.|+.||+|||||++|+.||+.+.
T Consensus 13 ~~~rDfYelLgV~k~A-sd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNA-SDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hcCCCHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 3568999999999999 55899999999999999999985 8999999999999999999999999999763
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=3.6e-20 Score=176.05 Aligned_cols=130 Identities=28% Similarity=0.327 Sum_probs=90.9
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCcc-----cc---
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLF-----TK--- 138 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~-----~~--- 138 (317)
.|||+||||+++| +.+|||+|||+|+++||||+|+.+.++++|++|++||++|||+.+|+.||+..... .+
T Consensus 4 ~d~y~vLgv~~~a-~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 4 KDYYAILGVPKNA-SQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 6999999999998 78999999999999999999988889999999999999999999999999865421 00
Q ss_pred -----CCCC--------cCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecc
Q 021106 139 -----IDLT--------THSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPR 202 (317)
Q Consensus 139 -----~~~~--------~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r 202 (317)
.++. ++++.+|++.+. .... .............+.|+.+.+. ||++++.+|.+.+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~-~~~~----g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~g 155 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGG-FGGF----GDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG 155 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCC-CCCc----ccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeCC
Confidence 0010 112223332110 0000 0000000001124678888888 99999999999987643
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-19 Score=170.83 Aligned_cols=143 Identities=26% Similarity=0.260 Sum_probs=104.1
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCccc---cCCCCc
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFT---KIDLTT 143 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~---~~~~~~ 143 (317)
.|||+||||+++| ++.|||+||++||+++|||.|....|++.|+.|.+||++|+|+++|..||..+..-. ..++.+
T Consensus 43 ~d~Y~vLgv~~~A-t~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~~~ 121 (288)
T KOG0715|consen 43 EDYYKVLGVSRNA-TLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNPFD 121 (288)
T ss_pred cchhhhhCcCCCC-CHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCccc
Confidence 3999999999998 789999999999999999999999999999999999999999999999999875320 001111
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecceecccccccCCCCCCeeecc
Q 021106 144 HSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGFHAAL 222 (317)
Q Consensus 144 ~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~ 222 (317)
.+..++++ .......+.+..+... .|.++..+|++.++|.. ...|.+|.+.. +.+
T Consensus 122 ~~~~~~~~------------------~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~-----~~~~~t~~~~~-~~~ 177 (288)
T KOG0715|consen 122 VFLEFFGG------------------KMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNV-----LSDCETCFGSG-AEE 177 (288)
T ss_pred hHHHhhcc------------------cccccccCcccccccccCHHHHhhccccceEEEe-----ecccccccCcC-ccc
Confidence 11112221 0111123334455555 99999999999998876 45899999988 322
Q ss_pred cCC--CCCccCCCC
Q 021106 223 VPN--LPPLVSGKD 234 (317)
Q Consensus 223 vp~--~Pp~v~G~~ 234 (317)
+-. ....|.|.+
T Consensus 178 ~~~~~~~~~~~~~~ 191 (288)
T KOG0715|consen 178 GAKRESCKTCSGRG 191 (288)
T ss_pred ccccccchhhhCcc
Confidence 221 334566665
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.76 E-value=4.5e-19 Score=169.55 Aligned_cols=122 Identities=27% Similarity=0.427 Sum_probs=89.7
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-----cccC-C
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-----FTKI-D 140 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-----~~~~-~ 140 (317)
.|||+||||++.+ +.+|||++||+|+++||||+++.+.++++|++|++||++|+|+.+|+.||..... +... .
T Consensus 4 ~d~y~~Lgv~~~a-~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 4 KDYYAIMGVKPTD-DLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred CChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 5999999999997 7899999999999999999998888999999999999999999999999985421 1100 0
Q ss_pred -----------CCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecc
Q 021106 141 -----------LTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPR 202 (317)
Q Consensus 141 -----------~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r 202 (317)
+.+.++.+|++++ +..++. ....+.|+.+.+. ||.+++.+|.+.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~----~~~~~~---------~~~kg~di~~~v~isLee~~~G~~k~i~~~~ 143 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHA----RQSRQR---------PAARGHDIEIEVAVFLEETLTEHKRTISYNL 143 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCC----CCCCCC---------CCCCCCceEEEEEEEHHHhcCCceEEEEEec
Confidence 0001111222110 000000 1124677888887 99999999999998866
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.71 E-value=5.2e-17 Score=155.56 Aligned_cols=123 Identities=26% Similarity=0.292 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKK 87 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkk 87 (317)
+.++-+.+.||.+|...+|+.|...+++|.+++++-..+.+=+.-+.-|. .....+|||+||||.++| +..||-|
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk----kqs~kRDYYKILGVkRnA-sKqEI~K 413 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK----KQSGKRDYYKILGVKRNA-SKQEITK 413 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH----HHhccchHHHHhhhcccc-cHHHHHH
Confidence 77899999999999999999999999999999998655443332222221 123567999999999998 7899999
Q ss_pred HHHHHHHHhCCCCCCcc----hHHHHHHHHHHHHHHhcCCCCcchhccccCc
Q 021106 88 QYRKLALLLHPDKNKYP----FADQAFTLVVDAWGVLSDTRKKTPYDHELSL 135 (317)
Q Consensus 88 aYr~La~~~HPDkn~~~----~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~ 135 (317)
+||+||.+||||...+. .|+.+|..|..|-+|||||++|..||+.-..
T Consensus 414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 99999999999988764 4889999999999999999999999987643
No 36
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=1.1e-17 Score=123.81 Aligned_cols=62 Identities=35% Similarity=0.597 Sum_probs=58.6
Q ss_pred CceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcch--HHHHHHHHHHHHHHhcCCCCcchhc
Q 021106 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPF--ADQAFTLVVDAWGVLSDTRKKTPYD 130 (317)
Q Consensus 68 D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~--A~~~f~~I~eAy~vLsDp~kR~~YD 130 (317)
|||+||||++++ +.++||++|+++++++|||++.... +++.|..|++||++|+|+.+|+.||
T Consensus 1 ~~y~iLgl~~~~-~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDA-SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTS-SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCC-CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999987 7899999999999999999987755 8999999999999999999999998
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.6e-17 Score=149.92 Aligned_cols=68 Identities=43% Similarity=0.628 Sum_probs=63.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCc
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL 135 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~ 135 (317)
.|+|+||||++++ +.++|||+||+|++++|||++++ |++.++|++||+||++|||+.+|..||..+..
T Consensus 31 ~~LYdVLgl~k~a-t~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 31 LDLYDVLGLPKTA-TKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hHHHHHhCCCccc-chHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 4899999999998 67999999999999999999987 88999999999999999999999999998643
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=1.3e-15 Score=110.81 Aligned_cols=58 Identities=48% Similarity=0.702 Sum_probs=53.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC--cchHHHHHHHHHHHHHHhcCCCC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK--YPFADQAFTLVVDAWGVLSDTRK 125 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~--~~~A~~~f~~I~eAy~vLsDp~k 125 (317)
.|||+||||++++ +.++||++|++|++++|||++. .+.+++.|++|++||++|+|+.+
T Consensus 1 ~~~y~vLgl~~~~-~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDA-SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 4899999999987 7899999999999999999998 57889999999999999999864
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.6e-16 Score=148.45 Aligned_cols=68 Identities=40% Similarity=0.606 Sum_probs=63.9
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||+.++ +..+|+++||..++++|||||++ |.|.+.|+.+.+||+||+|+.+|+.||..+.
T Consensus 4 ~~dyY~lLgi~~~a-t~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k 72 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA-TDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRK 72 (296)
T ss_pred cchHHHHhCCCCCC-CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 56999999999998 67999999999999999999984 8899999999999999999999999999774
No 40
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.1e-16 Score=151.53 Aligned_cols=67 Identities=45% Similarity=0.679 Sum_probs=62.0
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
.++||+||||.+++ +..+||++||+|||+||||||+. ..|.+.|++|+.||+|||||..|+-||...
T Consensus 7 ~~c~YE~L~v~~~a-~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVERDA-DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccccC-CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 35899999999998 67999999999999999999986 578899999999999999999999999865
No 41
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.57 E-value=3.3e-15 Score=106.67 Aligned_cols=54 Identities=48% Similarity=0.749 Sum_probs=50.9
Q ss_pred CceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcC
Q 021106 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 68 D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsD 122 (317)
|||+||||++.+ +.++||++||+|++++|||++.. ..+.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~-~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA-SDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999987 88999999999999999999987 6789999999999999987
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.56 E-value=2.2e-15 Score=159.13 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=64.3
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||+++| +..+||+|||+||+++|||+++...|.++|+.|++||+|||||.+|+.||..+.
T Consensus 571 ~d~dYYdILGVs~dA-S~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNA-DMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 357999999999998 789999999999999999999877888999999999999999999999998654
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.7e-15 Score=148.96 Aligned_cols=67 Identities=36% Similarity=0.631 Sum_probs=61.2
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP----FADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~----~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
+.|||.+|+|+++|+ .+|||+|||++++++||||..++ .|++.|++|.+||+|||||.+|+.||..+
T Consensus 8 e~e~Ya~LNlpkdAt-~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G 78 (546)
T KOG0718|consen 8 EIELYALLNLPKDAT-DEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYG 78 (546)
T ss_pred hhhHHHHhCCCcccC-HHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 359999999999995 59999999999999999999864 58999999999999999999999999743
No 44
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=141.36 Aligned_cols=116 Identities=34% Similarity=0.409 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRK 91 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~ 91 (317)
..+..|+.++..+++.+|.+.+.+|.++.-+ ..+.+++.-+.+-+. ..+.+|||.||||.+.+ +.+|||++||+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk----kSkRkd~ykilGi~~~a-s~~eikkayrk 396 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK----KSKRKDWYKILGISRNA-SDDEIKKAYRK 396 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH----HhhhhhHHHHhhhhhhc-ccchhhhHHHH
Confidence 3456678889999999999999999999877 344444433332221 11336999999999998 56899999999
Q ss_pred HHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 92 LALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 92 La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
+++.+|||++.. .+++.+|++|-+||.+|+|+.+|..||...
T Consensus 397 ~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 397 LALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 999999999964 478999999999999999999999999864
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.8e-15 Score=135.69 Aligned_cols=69 Identities=39% Similarity=0.616 Sum_probs=63.0
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHHHHHHhcCCCCcchhccccCc
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY---PFADQAFTLVVDAWGVLSDTRKKTPYDHELSL 135 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~---~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~ 135 (317)
..|.|+||||.++| +..+|+++|++|+++||||+++. ..|.+.|+.|+.||.||||.++|+.||...+.
T Consensus 13 ~~d~YevLGVer~a-~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDA-TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccC-CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 45999999999998 56899999999999999999963 47889999999999999999999999998753
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-14 Score=126.53 Aligned_cols=66 Identities=38% Similarity=0.614 Sum_probs=61.4
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcch--HHHHHHHHHHHHHHhcCCCCcchhccc
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPF--ADQAFTLVVDAWGVLSDTRKKTPYDHE 132 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~--A~~~f~~I~eAy~vLsDp~kR~~YD~~ 132 (317)
..|||+||||.+++ +..||+++||++++++|||+++... +++.|+.|++||++|+|+.+|..||..
T Consensus 5 ~~~~y~iLgv~~~a-s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNA-SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 35999999999988 7899999999999999999998653 899999999999999999999999985
No 47
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.4e-14 Score=140.89 Aligned_cols=71 Identities=42% Similarity=0.585 Sum_probs=66.4
Q ss_pred hhcCccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 62 RVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 62 ~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
+..+..|+|.||||+.++ +.++|||.||++|.+.|||||..+.|+|+|+.|+.||++|+|+++|..||.++
T Consensus 230 re~~~~daYsvlGl~~d~-sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 230 RELNILDAYSALGLPSDC-SDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hhhcCCCchhhcCCCCCC-CHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 344578999999999987 67999999999999999999999999999999999999999999999999876
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8e-14 Score=125.91 Aligned_cols=72 Identities=26% Similarity=0.422 Sum_probs=64.3
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccCccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFT 137 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~ 137 (317)
..-|+|+||||++.+ +..|||++||+|++++||||++. .+.++.|..|++||+.|+|+..|+.|....+..+
T Consensus 97 ~~fDPyEILGl~pga-s~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGA-SEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCC-CHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 345999999999998 67999999999999999999987 5677789999999999999999999999886433
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.46 E-value=4.2e-14 Score=146.69 Aligned_cols=67 Identities=43% Similarity=0.651 Sum_probs=63.1
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++++ +.++||++||+|++++|||++..+.+.++|++|++||++|+|+.+|+.||..+.
T Consensus 2 ~DYYeVLGVs~dA-S~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDA-DEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 5999999999998 789999999999999999999888888999999999999999999999998654
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=4.8e-13 Score=118.33 Aligned_cols=68 Identities=26% Similarity=0.431 Sum_probs=59.3
Q ss_pred cCceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++.. .|..+|+++||+|++++|||+.... .+.+.++.||+||++|+||.+|+.|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 3899999999963 4789999999999999999997542 255689999999999999999999998774
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=5.9e-13 Score=117.22 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=58.6
Q ss_pred cCceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcch----HHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYPF----ADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~~----A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++.. .|..+|+++||+|++++|||++.... +.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 4999999999962 47899999999999999999986432 23457899999999999999999998884
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.35 E-value=4.7e-13 Score=116.23 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=57.2
Q ss_pred CceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 68 DWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 68 D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.+|+||||+++| .+.++||++||++++++|||++. .+++|++|++||++|+|+.+|..||....
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 569999999986 15699999999999999999974 45799999999999999999999998763
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.5e-12 Score=115.38 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=60.7
Q ss_pred ccCceeeeecccC-CCCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRR-TDDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~-a~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||++|||++. ..|..+|+++||+|++++|||++... .+.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4699999999986 34789999999999999999998642 256679999999999999999999998884
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.31 E-value=2e-12 Score=114.87 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=59.2
Q ss_pred ccCceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCc-ch-----HHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKY-PF-----ADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~-~~-----A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||++.. .|..+|+++||+|++++|||++.. +. +.+.+..||+||.+|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 36999999999863 478999999999999999999864 32 33446899999999999999999998875
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-12 Score=120.57 Aligned_cols=68 Identities=32% Similarity=0.601 Sum_probs=64.0
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
+..|.|+||||.+.+ +..+|.++||+||+++|||+++.+.+++.|+.|..||++|.|.+.|..||-.+
T Consensus 31 G~enCYdVLgV~Rea-~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREA-NKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhc-cHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 345999999999998 88999999999999999999999999999999999999999999999999765
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.5e-12 Score=116.31 Aligned_cols=68 Identities=46% Similarity=0.711 Sum_probs=61.4
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP--FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~--~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||+|.+.++ .++|++||++|++++|||+|+.. .++.+|++|.+||++|+|+.+|..||+...
T Consensus 2 ~~d~~~~l~i~~~as-~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSAS-EEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCcccccc-HHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 369999999998884 46999999999999999999877 666689999999999999999999999763
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.13 E-value=4.1e-11 Score=99.45 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=46.3
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhc
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLS 121 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLs 121 (317)
.++|+||||++++ +.+|||++||+|++++|||+. +..+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~A-s~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTA-SKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCC-CHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 5999999999998 789999999999999999985 44578999999999995
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.10 E-value=7.1e-11 Score=111.34 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=49.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--------chHHHHHHHHHHHHHHhcC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--------PFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--------~~A~~~f~~I~eAy~vLsD 122 (317)
.|+|+||||++++ |.++||++||+|++++|||++.. ..++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~a-s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESD-DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCC-CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999998 78999999999999999999742 3488999999999999985
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=3e-10 Score=100.75 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=59.5
Q ss_pred cCceeeeecccC-CCCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRR-TDDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~-a~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||++|||++. ..|...++++|++|.+++|||+.... .+.+....||+||.+|+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 499999999986 55899999999999999999997543 245568999999999999999999988774
No 60
>PHA02624 large T antigen; Provisional
Probab=98.96 E-value=7.9e-10 Score=113.79 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=54.0
Q ss_pred cCceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchh
Q 021106 67 HDWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPY 129 (317)
Q Consensus 67 ~D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~Y 129 (317)
.++|+||||++++ -+.++||++||++++++|||++. ++++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4899999999986 14689999999999999999963 468999999999999999999998
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.8e-10 Score=100.49 Aligned_cols=63 Identities=37% Similarity=0.575 Sum_probs=56.5
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhc
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYD 130 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD 130 (317)
.|+|+||+|++.. +.++||+.||+|++++|||||++ +.|..+|..|..||..|-|+..|..-+
T Consensus 53 LNpfeVLqIdpev-~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 53 LNPFEVLQIDPEV-TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cChHHHHhcCCCC-CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4899999999987 67999999999999999999986 579999999999999999998665433
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.90 E-value=1.7e-09 Score=94.48 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 80 DDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 80 ~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|..+|+++||+|++++|||+.... .+.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3678999999999999999996432 266789999999999999999999999985
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.2e-09 Score=105.99 Aligned_cols=68 Identities=32% Similarity=0.531 Sum_probs=60.5
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc------chHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY------PFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~------~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
+.-|+|+||||+.++ +..+||++||+|+.++||||-+. ..-++..+.|++||..|+|...|+.|-..+
T Consensus 96 ~~fDPyEILGI~~~t-s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDT-SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCC-cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 345999999999987 56899999999999999999764 357789999999999999999999998765
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7e-08 Score=90.30 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=58.9
Q ss_pred ccCceeeeecccC--CCCHHHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 66 HHDWYSILQIDRR--TDDQDLIKKQYRKLALLLHPDKNK---YPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 66 ~~D~Y~VLgv~~~--a~~~~eIkkaYr~La~~~HPDkn~---~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
..|+|.+|||+.. -.+..+|.++.++...+||||+.. +.+.++.|++|+.||+||+|+.+|..||..-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 4699999999963 226689999999999999999973 3467899999999999999999999999754
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.3e-06 Score=93.56 Aligned_cols=54 Identities=37% Similarity=0.458 Sum_probs=46.4
Q ss_pred cCceeeeecccC---CCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcC
Q 021106 67 HDWYSILQIDRR---TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 67 ~D~Y~VLgv~~~---a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsD 122 (317)
.+-|+||.|+-+ ..+.+.||++|++||.+||||||+ +-.+.|..|++||+.|+.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 378999999864 225588999999999999999995 557899999999999983
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=7.3e-06 Score=75.48 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=50.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHH-HhcC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWG-VLSD 122 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~-vLsD 122 (317)
..||.||||...+ |.++++.+|..|++++|||........+.|..|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~-~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGA-DADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccC-chhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4899999999988 88999999999999999999887777788999999999 7764
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=9.3e-05 Score=60.46 Aligned_cols=50 Identities=30% Similarity=0.452 Sum_probs=43.3
Q ss_pred eeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCC
Q 021106 71 SILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTR 124 (317)
Q Consensus 71 ~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~ 124 (317)
.||||+++. +.+.||.++|++.+..|||+..+|. .-..||||+++|....
T Consensus 60 lIL~v~~s~-~k~KikeaHrriM~~NHPD~GGSPY---lAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 60 LILGVTPSL-DKDKIKEAHRRIMLANHPDRGGSPY---LASKINEAKDLLEGTS 109 (112)
T ss_pred HHhCCCccc-cHHHHHHHHHHHHHcCCCcCCCCHH---HHHHHHHHHHHHhccc
Confidence 399999886 8899999999999999999988774 4467999999997654
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=7.2e-05 Score=65.03 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=57.6
Q ss_pred CccCceeeeecccC-CCCHHHHHHHHHHHHHHhCCCCCCc------chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRR-TDDQDLIKKQYRKLALLLHPDKNKY------PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~-a~~~~eIkkaYr~La~~~HPDkn~~------~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...+||.++|.... .++++-++--|.-.++++|||+... ..|.+....||+||.+|.||-+|+.|=..+.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34599999988764 4566667779999999999999543 2477889999999999999999999988773
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0044 Score=54.93 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=45.9
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--------chHHHHHHHHHHHHHHh
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--------PFADQAFTLVVDAWGVL 120 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--------~~A~~~f~~I~eAy~vL 120 (317)
.|.|.+|++...+ +..+|+++|+++....|||+-.. ..++++++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~-~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA-DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh-hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6999999999987 78999999999999999998542 34778899999999754
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.14 E-value=0.023 Score=57.69 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=36.9
Q ss_pred eeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc--------hHHHHHHHHHHHHHHhc
Q 021106 72 ILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP--------FADQAFTLVVDAWGVLS 121 (317)
Q Consensus 72 VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~--------~A~~~f~~I~eAy~vLs 121 (317)
=+.|..- .+.++|||+||+..|.+||||.+.. -|++.|-++++||....
T Consensus 393 pVsltDL-Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 393 PVSLTDL-VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred cCchhhc-cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445443 3679999999999999999998653 26667888888887654
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.01 Score=52.55 Aligned_cols=67 Identities=30% Similarity=0.323 Sum_probs=51.9
Q ss_pred CceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcch------HHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 68 DWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYPF------ADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 68 D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~~------A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
||+..+++.+.. .+.+.++..|+.+.+.+|||+..... +-+.+..++.||.+|.|+.+|+.|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455566666542 25678999999999999999986432 23468899999999999999999976653
No 72
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=94.58 E-value=0.014 Score=30.48 Aligned_cols=11 Identities=73% Similarity=1.244 Sum_probs=4.3
Q ss_pred ccccCCCCCCC
Q 021106 306 AKKRGRPRKNP 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
.|+||||+|+.
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 48999999974
No 73
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=94.48 E-value=0.019 Score=35.33 Aligned_cols=11 Identities=73% Similarity=1.340 Sum_probs=9.6
Q ss_pred ccccCCCCCCC
Q 021106 306 AKKRGRPRKNP 316 (317)
Q Consensus 306 ~~~~~~~~~~~ 316 (317)
.||||||+|.+
T Consensus 1 kRkRGRPrK~~ 11 (26)
T smart00384 1 KRKRGRPRKAP 11 (26)
T ss_pred CCCCCCCCCCC
Confidence 48999999985
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.61 E-value=0.21 Score=30.99 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
|+-+..++..++..+++..|++.+.++.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 566788899999999999999999999999995
No 75
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.46 E-value=0.05 Score=35.99 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=26.3
Q ss_pred ecccCceeEEeecceeccc---ccccCCCCCCeeec
Q 021106 189 TACPYCYILYEYPRVYENC---CLRCENCKRGFHAA 221 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~---~l~C~~C~~~F~A~ 221 (317)
..||.|...|.++..-+.. .++|++|+..|.++
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 4699999999998655432 48999999999763
No 76
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.74 E-value=0.34 Score=30.35 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
|+-|..++..++..+++..|...+.+|.+++|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 567888999999999999999999999999995
No 77
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.25 E-value=0.66 Score=31.18 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
+-++..|+-++..|+++.|.+.++++.+.+|....+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 3567789999999999999999999999999865443
No 78
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=90.14 E-value=0.19 Score=33.38 Aligned_cols=31 Identities=26% Similarity=0.641 Sum_probs=25.1
Q ss_pred ecccCceeEEeeccee---cccccccCCCCCCee
Q 021106 189 TACPYCYILYEYPRVY---ENCCLRCENCKRGFH 219 (317)
Q Consensus 189 taC~gC~~~~ey~r~y---~~~~l~C~~C~~~F~ 219 (317)
+.||.|...|+++..- ....++|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 5799999999987653 355789999999885
No 79
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=89.88 E-value=0.59 Score=39.66 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=32.7
Q ss_pred eeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhc
Q 021106 70 YSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLS 121 (317)
Q Consensus 70 Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLs 121 (317)
..||+|++.. +.++|.+.|.+|-...+|++..+. -.-..|..|.+.|.
T Consensus 61 ~~ILnv~~~~-~~eeI~k~y~~Lf~~Nd~~kGGSf---YLQSKV~rAKErl~ 108 (127)
T PF03656_consen 61 RQILNVKEEL-SREEIQKRYKHLFKANDPSKGGSF---YLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHT--G---SHHHHHHHHHHHHHHT-CCCTS-H---HHHHHHHHHHHHHH
T ss_pred HHHcCCCCcc-CHHHHHHHHHHHHhccCCCcCCCH---HHHHHHHHHHHHHH
Confidence 5699999965 899999999999999999987543 33445666666654
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=89.39 E-value=1.6 Score=43.39 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCC---
Q 021106 4 NSNRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTD--- 80 (317)
Q Consensus 4 ~~~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~--- 80 (317)
..+..++++-+++..++|..+.|..|+..+..|.+++|. ..--|..-..|.+|.-+.-..-.|+=.||.+.++-.
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 347899999999999999999999999999999999996 222233333444443221111225555555555310
Q ss_pred -----------CHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Q 021106 81 -----------DQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGV 119 (317)
Q Consensus 81 -----------~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~v 119 (317)
..++-..-|+. .++..|..+...++.++...|.+-|..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~-vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQ-VLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHH-HHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 11222222333 344455544445556666666655543
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.80 E-value=0.59 Score=33.68 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.|+.|..+|..++..+|+..|...+.+|.+++|...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 488999999999999999999999999999999743
No 82
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.08 E-value=0.9 Score=43.81 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++.+||+++....+++..+||..|...+.+|..++|.-.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 678999999999999999999999999999999999844
No 83
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=86.62 E-value=0.36 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=23.3
Q ss_pred ecccCceeEEeecceec---ccccccCCCCCCee
Q 021106 189 TACPYCYILYEYPRVYE---NCCLRCENCKRGFH 219 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~---~~~l~C~~C~~~F~ 219 (317)
..|+.|...|+++-.-+ ...++|++|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 46999999999876544 33479999998873
No 84
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.21 E-value=13 Score=34.46 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=24.5
Q ss_pred eecccCCCCHHHHHHHHHHHHHH--hCCCCCCcchHHHHHHHHH
Q 021106 73 LQIDRRTDDQDLIKKQYRKLALL--LHPDKNKYPFADQAFTLVV 114 (317)
Q Consensus 73 Lgv~~~a~~~~eIkkaYr~La~~--~HPDkn~~~~A~~~f~~I~ 114 (317)
+.++....|+...++++..+... .+||..-.+.|...+..|.
T Consensus 128 ~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 128 FGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 34444434677788777755444 4888765555555544443
No 85
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.99 E-value=1.9 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
|+-+..++.-+...+|++.|...+.++.+++|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45677889999999999999999999999987
No 86
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.39 E-value=1.7 Score=37.44 Aligned_cols=49 Identities=22% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLA 58 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~a 58 (317)
+++.++.|++++..+|+.-|..++..+...+|....+.++.+-+-..++
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3567777899999999999999999999999987776666554444333
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.46 E-value=11 Score=35.50 Aligned_cols=69 Identities=29% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQ 88 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkka 88 (317)
-|..-+++|..+|+.+|+..|+..+.||.+.||.....--+++ -+|.-+|....+ .+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A----------------~~Yq~~Ge~~~A------~e~ 91 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA----------------HYYQKLGENDLA------DES 91 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH----------------HHHHHcCChhhH------HHH
Confidence 4556688999999999999999999999999998654332222 235555544332 234
Q ss_pred HHHHHHHhCCCC
Q 021106 89 YRKLALLLHPDK 100 (317)
Q Consensus 89 Yr~La~~~HPDk 100 (317)
||+ |+.+||+.
T Consensus 92 Yrk-Alsl~p~~ 102 (250)
T COG3063 92 YRK-ALSLAPNN 102 (250)
T ss_pred HHH-HHhcCCCc
Confidence 444 67788875
No 88
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.50 E-value=4.7 Score=37.44 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
++++|.+++.-..++|..+||.+|..-+..|..++|.+..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 3567888888889999999999999999999999998654
No 89
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.34 E-value=5.8 Score=28.46 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHH
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVL 56 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl 56 (317)
--+|...+..+|+..|++++..+.+++|....+.++..+++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3467888999999999999999999999876665555554443
No 90
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=2.3 Score=41.11 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC-----cchHHHHHHHHHHHHHHhcCCCCcchhccc
Q 021106 81 DQDLIKKQYRKLALLLHPDKNK-----YPFADQAFTLVVDAWGVLSDTRKKTPYDHE 132 (317)
Q Consensus 81 ~~~eIkkaYr~La~~~HPDkn~-----~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~ 132 (317)
+..+|+.+|+..++.+||++-. ....++.++.|.+||++|++..+|..+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 5688999999999999999874 224567799999999999997766666653
No 91
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=78.21 E-value=1.8 Score=29.86 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=23.9
Q ss_pred cccCceeEEeecceecccccccCCCCCCeee
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
.|+.|-..+++..... .++|+.|+..++-
T Consensus 5 ~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~ 33 (46)
T PRK00398 5 KCARCGREVELDEYGT--GVRCPYCGYRILF 33 (46)
T ss_pred ECCCCCCEEEECCCCC--ceECCCCCCeEEE
Confidence 5999999999987654 6899999988754
No 92
>PRK11827 hypothetical protein; Provisional
Probab=76.67 E-value=1.5 Score=32.55 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.0
Q ss_pred ecccCceeEEeecceecccccccCCCCCCe
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
-+||.|+...+|.. ....|.|..|+..|
T Consensus 9 LaCP~ckg~L~~~~--~~~~Lic~~~~laY 36 (60)
T PRK11827 9 IACPVCNGKLWYNQ--EKQELICKLDNLAF 36 (60)
T ss_pred eECCCCCCcCeEcC--CCCeEECCccCeec
Confidence 47999999998865 24578999999888
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=76.65 E-value=6.4 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
..|..++..+|++.|...+.++.+.+|....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 32 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE 32 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 4677888888888888888888888886443
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=76.58 E-value=21 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.+......+..++..+++..|.+++.++..++|....
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 52 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR 52 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH
Confidence 44566777899999999999999999999999997543
No 95
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.24 E-value=5.9 Score=23.91 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
....+|..++..+|+..|+..+.+....+|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3566788889999999999999999999985
No 96
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=76.05 E-value=14 Score=30.51 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
+...++.++..+++..|...+.++..++|..+.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34456678889999999999999999999977653
No 97
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=74.91 E-value=21 Score=37.84 Aligned_cols=119 Identities=8% Similarity=0.092 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHH-----------HHHHHHHHHhhcCccCceeeee--cccC
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAV-----------VDVLLAAEKRVNNHHDWYSILQ--IDRR 78 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav-----------~dvl~aa~~~~~~~~D~Y~VLg--v~~~ 78 (317)
.+...+.-++..++++.|...+.++.+++|....+...+.. .+.+..+...-+...+++-.++ +...
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 33445666788899999999999999999986544322222 1111111111111112222112 1111
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 79 TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 79 a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
. +.++-.+.|++ ++..+|+..+... +++...+.++++.+..+.++..+-.++
T Consensus 366 G-~~deA~~~l~~-al~~~P~~~~~~~-~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 366 G-KTSEAESVFEH-YIQARASHLPQSF-EEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred C-CHHHHHHHHHH-HHHhChhhchhhH-HHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 2 45666677766 4678888765443 468889999999999888775554444
No 98
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.85 E-value=5.7 Score=28.64 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=19.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 18 EKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 18 ek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.-+++.+|+..|...+.++..++|....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 30 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE 30 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch
Confidence 4466777777777777777777776443
No 99
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=73.64 E-value=5.2 Score=28.56 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhCC
Q 021106 8 AEAERLLGVAEKLLNQR-DLNGSKEFAILAQETEP 41 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~-D~~gA~~~a~kA~~l~P 41 (317)
+.+.-+..++..++..+ ++..|+.++.+|.+++|
T Consensus 35 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 35 NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777888899998 79999999999999988
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=73.43 E-value=6 Score=38.70 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
..++..|.+++..+++..|..++.+|.+++|....+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a 38 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAEL 38 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 357788999999999999999999999999985443
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=73.04 E-value=4.8 Score=28.53 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.++-+..++.-++..+++..|...+.++..++|..
T Consensus 29 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 29 DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 356667777899999999999999999999999963
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=73.04 E-value=34 Score=30.54 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.++.|..++.-++..++++.|...+.+|.+++|....
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE 108 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 44677888899999999999999999999999997544
No 103
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=72.80 E-value=1.7 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.722 Sum_probs=27.4
Q ss_pred ccceecccCceeEEeecceecccccccCCCCCCe
Q 021106 185 SSFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 185 ~tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+..|+-||.|...+ |.+....+.-.|++|+..|
T Consensus 25 e~lw~KCp~c~~~~-y~~eL~~n~~vcp~c~~h~ 57 (294)
T COG0777 25 EGLWTKCPSCGEML-YRKELESNLKVCPKCGHHM 57 (294)
T ss_pred CCceeECCCcccee-eHHHHHhhhhcccccCccc
Confidence 58999999998775 7777777777999999665
No 104
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=71.97 E-value=2.9 Score=25.63 Aligned_cols=23 Identities=39% Similarity=0.852 Sum_probs=19.5
Q ss_pred ccCceeEEeecceecccccccCCCC
Q 021106 191 CPYCYILYEYPRVYENCCLRCENCK 215 (317)
Q Consensus 191 C~gC~~~~ey~r~y~~~~l~C~~C~ 215 (317)
|.+|..++.|++. ...++|..|+
T Consensus 1 C~~Cr~~L~yp~G--A~sVrCa~C~ 23 (25)
T PF06943_consen 1 CGGCRTLLMYPRG--APSVRCACCH 23 (25)
T ss_pred CCCCCceEEcCCC--CCCeECCccC
Confidence 7899999999985 5678999986
No 105
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=71.58 E-value=2.7 Score=36.85 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=22.3
Q ss_pred cccCceeEE---eecc----e-ecccccccCCCCCCeeecccCC
Q 021106 190 ACPYCYILY---EYPR----V-YENCCLRCENCKRGFHAALVPN 225 (317)
Q Consensus 190 aC~gC~~~~---ey~r----~-y~~~~l~C~~C~~~F~A~~vp~ 225 (317)
.||+|-... --.+ . .+...-.|++|+++|.++|.-.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence 499997422 1111 1 2222357999999999986554
No 106
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=71.23 E-value=4.1 Score=29.63 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=26.0
Q ss_pred cceecccCce----eEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCY----ILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~----~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+-|-.||-|. ..+.-+....|.-|.|+.|++..
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Et 38 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQET 38 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceE
Confidence 4599999997 45556677778888999999865
No 107
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.50 E-value=8.5 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
-+..++.-++..+++..|...+.++..++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3556788899999999999999999888774
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=69.39 E-value=5.4 Score=28.32 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=17.1
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 20 LLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 20 ~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++..+|+..|...+.++...+|...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH
Confidence 4566777777777777777777633
No 109
>PRK05685 fliS flagellar protein FliS; Validated
Probab=68.73 E-value=23 Score=29.92 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|.+.+..|+.++..+|+..+...+.||+.+
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~I 64 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINI 64 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998765
No 110
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=68.09 E-value=50 Score=31.41 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=50.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHHHHH
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLAL 94 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~ 94 (317)
...+.+|..+||.+|...+...+.+--.+.++. .+.+..... .++++. ..+.+...+.+++.
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~---c~~~L~~~L-------~e~~~~--------i~~~ld~~l~~~~~ 193 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQLLEELKGYS---CVRHLSSQL-------QETLEL--------IEEQLDSDLSKVCQ 193 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch---HHHHHhHHH-------HHHHHH--------HHHHHHHHHHHHHH
Confidence 344778889999999999988877643332221 111111110 133321 23567777788877
Q ss_pred HhCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 021106 95 LLHPDKNKYPFADQAFTLVVDAWGVLSDT 123 (317)
Q Consensus 95 ~~HPDkn~~~~A~~~f~~I~eAy~vLsDp 123 (317)
.+.|+ .+..|.+||..|.+.
T Consensus 194 ~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 194 DFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred hCCHH---------HHHHHHHHHHHHhhh
Confidence 66665 688899999999854
No 111
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.91 E-value=2.3 Score=26.21 Aligned_cols=25 Identities=28% Similarity=0.572 Sum_probs=18.5
Q ss_pred cccCceeEEeecceecccccccCCCCCCeee
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
.||.|.+++.-. ...|+.|+-.|.|
T Consensus 2 ~CP~C~~~V~~~------~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 2 TCPECGAEVPES------AKFCPHCGYDFEA 26 (26)
T ss_pred cCCCCcCCchhh------cCcCCCCCCCCcC
Confidence 488888877432 4689999988854
No 112
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.97 E-value=28 Score=34.39 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccC
Q 021106 5 SNRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRR 78 (317)
Q Consensus 5 ~~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~ 78 (317)
.+..||.-++..|.+....|.++.|.+++..|..++|+.+.+ ++..-.....-..-+..+.=|.+-|-+++.
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~--L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI--LIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH--HHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 367899999999999999999999999999999999986543 122111111111112223356677777774
No 113
>PF14369 zf-RING_3: zinc-finger
Probab=66.85 E-value=5.2 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.734 Sum_probs=19.9
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~ 219 (317)
+|| |-.|...+..... .+..+.|+.|++.|+
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEe
Confidence 455 7778877776432 222345999998885
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=66.32 E-value=95 Score=27.53 Aligned_cols=37 Identities=22% Similarity=0.067 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.++.+-+.|..+|..+|+..|...+.+....+|..+-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~ 40 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY 40 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH
Confidence 3455555666666666666666666666666665443
No 115
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.85 E-value=29 Score=37.71 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=35.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCccccCCC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTKIDL 141 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~~ 141 (317)
.||-++| ++.+| |.-||+----++ ......++|..+ |+++.|+|.++.+.-|-..+.|+...+
T Consensus 1048 ~DYEd~l-------pP~ei---ySllALaaca~r-aFGtCSKAfmkL-e~~e~l~~a~kq~ye~La~~iFsk~~p 1110 (1189)
T KOG2041|consen 1048 SDYEDFL-------PPAEI---YSLLALAACAVR-AFGTCSKAFMKL-EAFEELDDAEKQEYENLAFRIFSKNPP 1110 (1189)
T ss_pred ccHhhcC-------CHHHH---HHHHHHHHhhhh-hhhhhHHHHHHH-HhhhhCCHHHHHHHHHHHHHHhccCCC
Confidence 4776666 34555 444444333332 233455566665 578888877765555555555655443
No 116
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=64.69 E-value=52 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+..+...|+.+|..+++..|.+.+.....-+|.-+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ 44 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE 44 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Confidence 34555666667777777777777777666666533
No 117
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=63.81 E-value=2.4 Score=40.91 Aligned_cols=32 Identities=28% Similarity=0.737 Sum_probs=24.9
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..|+.|+.|...+ |.+.++...-.|+.|+..|
T Consensus 36 ~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~ 67 (296)
T CHL00174 36 HLWVQCENCYGLN-YKKFLKSKMNICEQCGYHL 67 (296)
T ss_pred CCeeECCCccchh-hHHHHHHcCCCCCCCCCCc
Confidence 5799999999876 4555556667999999655
No 118
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=63.81 E-value=39 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-....+..++..+++..|...+.++...+|...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 36 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST 36 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 45567889999999999999999999999888643
No 119
>PF13446 RPT: A repeated domain in UCH-protein
Probab=62.22 E-value=11 Score=27.32 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=21.4
Q ss_pred CceeeeecccCCCCHHHHHHHHHHHHH
Q 021106 68 DWYSILQIDRRTDDQDLIKKQYRKLAL 94 (317)
Q Consensus 68 D~Y~VLgv~~~a~~~~eIkkaYr~La~ 94 (317)
+-|++|||+++. +.+.|..+|+....
T Consensus 6 ~Ay~~Lgi~~~~-~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDT-DDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCC-CHHHHHHHHHHHHH
Confidence 348999999886 55899999998766
No 120
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=61.68 E-value=1.1e+02 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
-|.++..++..+++..|..-+.+-.+|+|.-+.++
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 35568888888999999988888888888877764
No 121
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=61.20 E-value=3 Score=40.17 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=24.7
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..|+.|+.|...+ |.+.+....-.|+.|+..|
T Consensus 25 ~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~ 56 (292)
T PRK05654 25 GLWTKCPSCGQVL-YRKELEANLNVCPKCGHHM 56 (292)
T ss_pred CCeeECCCccchh-hHHHHHhcCCCCCCCCCCe
Confidence 6799999999876 4444555556999999777
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=60.95 E-value=17 Score=30.58 Aligned_cols=89 Identities=8% Similarity=-0.013 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHH-----------HHHHHHHHHHhhcCccCceeeeecccC-C
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILA-----------VVDVLLAAEKRVNNHHDWYSILQIDRR-T 79 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ila-----------v~dvl~aa~~~~~~~~D~Y~VLgv~~~-a 79 (317)
.+...+..++..++++.|...+.++..++|.....-..+. +.+.+..+...-+...+++--||+--. .
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3556788899999999999999999999997543322111 122222222222233344555554321 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC
Q 021106 80 DDQDLIKKQYRKLALLLHPDKN 101 (317)
Q Consensus 80 ~~~~eIkkaYr~La~~~HPDkn 101 (317)
-..++-...|++. +.+.||..
T Consensus 106 g~~~eAi~~~~~A-l~~~p~~~ 126 (144)
T PRK15359 106 GEPGLAREAFQTA-IKMSYADA 126 (144)
T ss_pred CCHHHHHHHHHHH-HHhCCCCh
Confidence 1456677777764 66777753
No 123
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=60.70 E-value=2.5 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.6
Q ss_pred eecccccccCCCCCCe
Q 021106 203 VYENCCLRCENCKRGF 218 (317)
Q Consensus 203 ~y~~~~l~C~~C~~~F 218 (317)
..++-.|.|++|++.|
T Consensus 48 ~i~eg~L~Cp~c~r~Y 63 (68)
T PF03966_consen 48 EIVEGELICPECGREY 63 (68)
T ss_dssp ETTTTEEEETTTTEEE
T ss_pred cccCCEEEcCCCCCEE
Confidence 5567788999999998
No 124
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=60.28 E-value=20 Score=32.45 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=30.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhc
Q 021106 76 DRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLS 121 (317)
Q Consensus 76 ~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLs 121 (317)
+++| +.|||++|+.++..+|--| ++.-..|..||+.|-
T Consensus 1 S~~A-SfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDA-SFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCC-CHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 3566 7899999999999988554 356778999998764
No 125
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.90 E-value=27 Score=36.36 Aligned_cols=48 Identities=15% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDV 55 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dv 55 (317)
..|..++....+.+.++.|+.|.+++..|..++|+-+-.=+-.+++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~ 160 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE 160 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH
Confidence 468888888899999999999999999999999985433333444443
No 126
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=59.67 E-value=3.2 Score=39.84 Aligned_cols=32 Identities=28% Similarity=0.732 Sum_probs=24.6
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..|+.|+.|...+ |.+..+...-.|+.|+..|
T Consensus 24 ~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~ 55 (285)
T TIGR00515 24 GVWTKCPKCGQVL-YTKELERNLEVCPKCDHHM 55 (285)
T ss_pred CCeeECCCCcchh-hHHHHHhhCCCCCCCCCcC
Confidence 5799999998876 4444555556999999776
No 127
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=58.78 E-value=21 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
+..+|.-+...+|++.|..++.++..+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999765543
No 128
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=5.5 Score=29.55 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.8
Q ss_pred ecccCceeEEeecceecccccccCCCCCCe
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
-+||-|+....|.+. ...|.|+.|+.+|
T Consensus 9 LaCP~~kg~L~~~~~--~~~L~c~~~~~aY 36 (60)
T COG2835 9 LACPVCKGPLVYDEE--KQELICPRCKLAY 36 (60)
T ss_pred eeccCcCCcceEecc--CCEEEecccCcee
Confidence 379999999888763 5688999999999
No 129
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=25 Score=35.34 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh----HHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHH
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS----DQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQY 89 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~----~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaY 89 (317)
+.+|.-+|..+++..|.....++.+++|.-..+ -+.+.....+..|. .||-++|.|.|. + .+|+.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~------~df~ka~k~~P~--N-ka~~~el 331 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLAR------DDFQKALKLEPS--N-KAARAEL 331 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHH------HHHHHHHHhCCC--c-HHHHHHH
Confidence 566777888888888888888888888863221 12222222222222 377778888875 3 5566666
Q ss_pred HHHHHHhCCCCC
Q 021106 90 RKLALLLHPDKN 101 (317)
Q Consensus 90 r~La~~~HPDkn 101 (317)
.+|..+++--..
T Consensus 332 ~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 332 IKLKQKIREYEE 343 (397)
T ss_pred HHHHHHHHHHHH
Confidence 666665544433
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=57.35 E-value=12 Score=26.97 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQI 49 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~i 49 (317)
+...-+...|.-++..+++.+|...+.++.+..|.-+.+..+
T Consensus 27 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 27 DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 355666777888999999999999999999999975554443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=57.28 E-value=39 Score=28.34 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
..+.-+...|.-+...+++..|..++.+|..++|....+
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 346677888999999999999999999999999976544
No 132
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=57.10 E-value=7.9 Score=24.85 Aligned_cols=25 Identities=36% Similarity=0.821 Sum_probs=20.7
Q ss_pred cccCceeEEeecceecccccccCCCCC
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKR 216 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~ 216 (317)
.|.+|...+.|++. ...++|..|+-
T Consensus 3 ~C~~C~t~L~yP~g--A~~vrCs~C~~ 27 (31)
T TIGR01053 3 VCGGCRTLLMYPRG--ASSVRCALCQT 27 (31)
T ss_pred CcCCCCcEeecCCC--CCeEECCCCCe
Confidence 58999999999985 56789999963
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=55.70 E-value=18 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQI 49 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~i 49 (317)
.+-++.+|+-++..++++.|+..+.++...+|..+.+..+
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4556678899999999999999999999999975444433
No 134
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.62 E-value=36 Score=26.78 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+..+....+|+.++..+++.+|...+....+.++...
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 4456677889999999999999999999999999874
No 135
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.36 E-value=45 Score=30.84 Aligned_cols=62 Identities=26% Similarity=0.239 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHH-HHHHHHHHHHHhhcCccC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQIL-AVVDVLLAAEKRVNNHHD 68 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~il-av~dvl~aa~~~~~~~~D 68 (317)
.|-...-..++|++++..+|++.|.+++..+...+-. ++...|+ .+...++.....+++..+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-EGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3445566678999999999999999999999666553 3333333 333444444444444333
No 136
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.71 E-value=23 Score=24.44 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQE 38 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~ 38 (317)
+++|+.++..||.++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.26 E-value=38 Score=36.52 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHH----HH----HHHHHHHHHHHhhcCccCceeeeeccc----
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQ----IL----AVVDVLLAAEKRVNNHHDWYSILQIDR---- 77 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~----il----av~dvl~aa~~~~~~~~D~Y~VLgv~~---- 77 (317)
++..+-+|+-.++.+.+++|.+.+..+.+++|....+.- +| .+.+-+..+++.+....|.+..+.+--
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 344444588899999999999999999999998554321 11 112222233333444444444333221
Q ss_pred -CCCCHHHHHHHHHHHHHHhCCCCCCc-----------chHHHHHHHHHHHHHHhcCCCCc
Q 021106 78 -RTDDQDLIKKQYRKLALLLHPDKNKY-----------PFADQAFTLVVDAWGVLSDTRKK 126 (317)
Q Consensus 78 -~a~~~~eIkkaYr~La~~~HPDkn~~-----------~~A~~~f~~I~eAy~vLsDp~kR 126 (317)
.. ..++--..|+++.. .|||.-.. ...+++...+.+|.+..++-.|+
T Consensus 166 ~~g-~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 166 EIG-QSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred Hhc-chHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 11 35678889999877 89984321 23455666667777777776644
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=52.93 E-value=29 Score=26.61 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.....++..++..+++..|...+.++...+|..+.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 34455678889999999999999999999987543
No 139
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=52.43 E-value=40 Score=28.35 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=30.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVD 54 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~d 54 (317)
-+++.|.++..|++.+|..++-+|...+|. ..++|.+++
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q---P~~LL~i~q 104 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ---PAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS---HHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 467789999999999999999999999994 445555544
No 140
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.39 E-value=26 Score=35.21 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=21.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
-..++.++..++|+.|+.++++|++++|.-..+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 344566777777777777777777777764333
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=50.19 E-value=38 Score=33.09 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
.+..+..+|..++..+++..|...+.+|..++|....+
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 35567788999999999999999999999999975543
No 142
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=50.05 E-value=45 Score=20.79 Aligned_cols=31 Identities=19% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
.-+-.+|.-+...+++..|..++.++..+.-
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3456678889999999999999999876643
No 143
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=49.79 E-value=39 Score=31.11 Aligned_cols=38 Identities=21% Similarity=0.011 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
..+.-|...|+-+...|+.+.|.+.+.+|.+++|..+.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34566777888889999999999999999999997544
No 144
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=49.36 E-value=43 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC-cch----HHHHHHHHHHHHHHhcCCCC
Q 021106 81 DQDLIKKQYRKLALLLHPDKNK-YPF----ADQAFTLVVDAWGVLSDTRK 125 (317)
Q Consensus 81 ~~~eIkkaYr~La~~~HPDkn~-~~~----A~~~f~~I~eAy~vLsDp~k 125 (317)
...+++.+.|.+-++.|||... .|. -++.++.++.-.+.|..+..
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~~ 56 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRKS 56 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 3468999999999999999754 332 34568888888888876553
No 145
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=49.16 E-value=37 Score=26.96 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+|...|..|+..+..+|+..|+.++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999999998765
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=49.08 E-value=62 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
...-+..++.-++..+++..|...+.++..++|.....-
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 345667778888999999999999999999998754443
No 147
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=48.75 E-value=13 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=27.8
Q ss_pred ccceecccCceeEEeecceecccccccCCCCCCeeec
Q 021106 185 SSFWTACPYCYILYEYPRVYENCCLRCENCKRGFHAA 221 (317)
Q Consensus 185 ~tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~ 221 (317)
..++-.|..|...+...+..-....+|..|++.|+-+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 4789999999988876665422344899999988643
No 148
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=48.70 E-value=7.5 Score=34.96 Aligned_cols=13 Identities=54% Similarity=0.992 Sum_probs=10.5
Q ss_pred ccccccCCCCCCC
Q 021106 304 TGAKKRGRPRKNP 316 (317)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (317)
--++|||||||+.
T Consensus 66 dAKRKRGRPRKKs 78 (219)
T PF14621_consen 66 DAKRKRGRPRKKS 78 (219)
T ss_pred hhhhhcCCCccCC
Confidence 4578999999974
No 149
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=48.69 E-value=2.5e+02 Score=26.74 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHH--HH--------HHHH-HHHH---hhcCcc--Cc--e
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILA--VV--------DVLL-AAEK---RVNNHH--DW--Y 70 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ila--v~--------dvl~-aa~~---~~~~~~--D~--Y 70 (317)
.+..|-+.+...|..+|+.+|.+.+.+....+|.-+-.+|.+- +. +..+ .+++ .-+.+. || |
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 5889999999999999999999999999999998665543221 11 1111 1111 111222 22 1
Q ss_pred -----eeeecccCCCCHHHHHHHHHHHHHHh--CCCCCCcchHHHHHHHHHHHH
Q 021106 71 -----SILQIDRRTDDQDLIKKQYRKLALLL--HPDKNKYPFADQAFTLVVDAW 117 (317)
Q Consensus 71 -----~VLgv~~~a~~~~eIkkaYr~La~~~--HPDkn~~~~A~~~f~~I~eAy 117 (317)
.+.+++....|+..++.+|..+...+ -|+.-=.+.|..++..++++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence 12344443347888999999886665 354432345666655555543
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=48.27 E-value=41 Score=29.89 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHH-HHHHHHHhhcCccCceeeeecccCCCCHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVD-VLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQ 88 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~d-vl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkka 88 (317)
....+.+|...+..+|+..|...+.+-.+.+|..+.++..+-..- .+.... ..++-.. .|...++++
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~---------~~~~~~~---~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI---------PGILRSD---RDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH---------HHHH-TT------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC---------ccchhcc---cChHHHHHH
Confidence 344577899999999999999999999999999887765432211 111110 1111112 245667777
Q ss_pred HHHHHH--HhCCCCCCcchHHHHHHHH
Q 021106 89 YRKLAL--LLHPDKNKYPFADQAFTLV 113 (317)
Q Consensus 89 Yr~La~--~~HPDkn~~~~A~~~f~~I 113 (317)
+..+.. ..+|+..-...|...+..|
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAEL 136 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHH
Confidence 665544 4478865434444444333
No 151
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=48.12 E-value=17 Score=26.33 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=30.4
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccC
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVP 224 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp 224 (317)
..||-|-..++++...++-.+.|+.|+-.+.-+..-
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~ 38 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAELEVVSLD 38 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCC
Confidence 379999999999998888888999999988665443
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.63 E-value=38 Score=32.88 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=18.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+|-.+.+.+.+..|.+.+.+|.++||..
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~iDp~y 148 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSIDPHY 148 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence 34555666666666666666666666653
No 153
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.40 E-value=57 Score=26.28 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
++.+.+++..+-..+.+||+..|.+.+.++.+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999776
No 154
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=47.22 E-value=22 Score=23.21 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=19.8
Q ss_pred ceecccCceeEEeecceec-ccccccCCCCC
Q 021106 187 FWTACPYCYILYEYPRVYE-NCCLRCENCKR 216 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~-~~~l~C~~C~~ 216 (317)
|.-.|+.|.+.++...... ...+.|+.|+.
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EEEEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 3446788888777655443 44557888876
No 155
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=47.00 E-value=12 Score=31.69 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=24.0
Q ss_pred ccceecccCceeEE--eecceec-ccccccCCCCCCeeec
Q 021106 185 SSFWTACPYCYILY--EYPRVYE-NCCLRCENCKRGFHAA 221 (317)
Q Consensus 185 ~tFwtaC~gC~~~~--ey~r~y~-~~~l~C~~C~~~F~A~ 221 (317)
......||.|...+ .+-...- .+.=+|++|+++|.-.
T Consensus 27 ~~~~~~cP~C~s~~~~k~g~~~~~~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 27 QITKVNCPRCKSSNVVKIGGIRRGHQRYKCKSCGSTFTVE 66 (129)
T ss_pred hcccCcCCCCCccceeeECCccccccccccCCcCcceeee
Confidence 46778999998666 2211111 2334899999999553
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=46.83 E-value=49 Score=30.64 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
.++.+...|++.+..+|+..|...+.+....+|..+-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a 68 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS 68 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 35567788999999999999999999999999976543
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=46.36 E-value=2.1e+02 Score=25.20 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.=+..-..|-.++..|++++|.++++-+..++|...
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~ 69 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF 69 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 46677888899999999999999999999999999743
No 158
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=45.97 E-value=10 Score=22.91 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=10.2
Q ss_pred cccCCCCCCeee
Q 021106 209 LRCENCKRGFHA 220 (317)
Q Consensus 209 l~C~~C~~~F~A 220 (317)
+.|+.|+|.|..
T Consensus 3 ~~C~~CgR~F~~ 14 (25)
T PF13913_consen 3 VPCPICGRKFNP 14 (25)
T ss_pred CcCCCCCCEECH
Confidence 679999999944
No 159
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=45.43 E-value=11 Score=25.23 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=16.1
Q ss_pred ccCceeEEeecceecccc-cccCCCCCCee
Q 021106 191 CPYCYILYEYPRVYENCC-LRCENCKRGFH 219 (317)
Q Consensus 191 C~gC~~~~ey~r~y~~~~-l~C~~C~~~F~ 219 (317)
||.|....+-.+. -+-. -.|++|++-++
T Consensus 2 CP~C~~~l~~~~~-~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 2 CPRCGTELEPVRL-GDVEIDVCPSCGGIWF 30 (41)
T ss_pred cCCCCcccceEEE-CCEEEEECCCCCeEEc
Confidence 7788765442221 1112 27999998774
No 160
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=45.41 E-value=39 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|.+.+..|..++..+|+..+...+.||+.+
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~I 58 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDI 58 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998754
No 161
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=44.69 E-value=49 Score=31.43 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQ 48 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ 48 (317)
-+...+..+++.+||..|...+++|+++.|.......
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3333677788899999999999999999887554433
No 162
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=44.01 E-value=69 Score=27.03 Aligned_cols=84 Identities=20% Similarity=0.093 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccC-CCCHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRR-TDDQDLIK 86 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~-a~~~~eIk 86 (317)
.+|++-+..|+..|..|++.-|-.++++|.++.= -.+|...-...+..+|..++|+.-.. ..-.++|.
T Consensus 11 ~rA~~~l~~A~~~le~G~y~~a~f~aqQAvel~l-----------KalL~~~~~~~p~tH~l~~Ll~~l~~~~~~~e~~~ 79 (132)
T COG2250 11 RRAERDLKLAKRDLELGDYDLACFHAQQAVELAL-----------KALLIRLGGEPPKTHSLRELLRELSRELEVPEEIL 79 (132)
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-----------HHHHHHhcCCCCCcCCHHHHHHHHHHhccCcHHHH
Confidence 4566666677778889999999999999876621 11111111112233455555553321 11235566
Q ss_pred HHHHHHHHHhCCCCCC
Q 021106 87 KQYRKLALLLHPDKNK 102 (317)
Q Consensus 87 kaYr~La~~~HPDkn~ 102 (317)
+..+.|-+.+-+++.+
T Consensus 80 ~~~~~Le~~yi~srY~ 95 (132)
T COG2250 80 ECARELEKRYILSRYP 95 (132)
T ss_pred HHHHHHHHHHhHhcCc
Confidence 6666666666555443
No 163
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=42.84 E-value=79 Score=26.35 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.+.+.+..|...+..+|+..+...+.||+.+
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~I 60 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNI 60 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888999999999999999999999988765
No 164
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=42.40 E-value=21 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=20.3
Q ss_pred eeccc--CceeEEeecceecccccccCCCCCCe
Q 021106 188 WTACP--YCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 188 wtaC~--gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+.-|| .|...+..........+.|+.|+..|
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~f 50 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSF 50 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeE
Confidence 34577 88777776533345567788777666
No 165
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=42.03 E-value=18 Score=38.48 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=36.5
Q ss_pred cceecccCceeEEeecce-ecccccccCCCCCCeeecccCCCC-CccCCCCeeEecccc
Q 021106 186 SFWTACPYCYILYEYPRV-YENCCLRCENCKRGFHAALVPNLP-PLVSGKDAYYCCWGF 242 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~-y~~~~l~C~~C~~~F~A~~vp~~P-p~v~G~~~~~c~wgf 242 (317)
.=|-.|+.|.+-+.+.+. -..+-+.|..|..+||-+.+-++- -++.|. |.|.|.+
T Consensus 60 ~~gWrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~--~~ckk~~ 116 (694)
T KOG4443|consen 60 SGGWRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGP--WLCKKCT 116 (694)
T ss_pred cCCcccCCceeeeeccccCCcccccccccccccccccccCCccccccCcc--cccHHHH
Confidence 456689999988877621 223456999999999988775421 133443 6666654
No 166
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=75 Score=24.72 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.9
Q ss_pred CceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 021106 68 DWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVV 114 (317)
Q Consensus 68 D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~ 114 (317)
+--+++++++.+ +.+||+.+-++..+++.=...++....++|....
T Consensus 4 NIk~LfnfdPPA-T~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV 49 (88)
T COG5552 4 NIKELFNFDPPA-TPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAV 49 (88)
T ss_pred chHHHhCCCCCC-CcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHH
Confidence 445678999988 5689999988888888544444444444554433
No 167
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=41.43 E-value=83 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.++.+..++..++..+++++|...+.+|.+++|....
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 56888999999999999999999999999999998643
No 168
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=41.22 E-value=1.2e+02 Score=23.22 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
|+.|-.|+..-||++|..+++++-..-+.|.+.++--
T Consensus 12 N~rEI~RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 48 (70)
T PF10849_consen 12 NRREIKRLKKHAEEALIENNKEGYVYAIKKLRDIYKQ 48 (70)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 7889999999999999999999999988888877654
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.07 E-value=1.9e+02 Score=27.16 Aligned_cols=36 Identities=11% Similarity=-0.074 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHH-HhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKL-LNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~-l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++..+.+.|..+ +..+++..|...+.+....+|...
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~ 177 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST 177 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc
Confidence 356667778876 567899999999999999999854
No 170
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.55 E-value=39 Score=29.97 Aligned_cols=33 Identities=18% Similarity=0.007 Sum_probs=27.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.+|+-++..+++..|...+.++...+|..+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 366788889999999999999999999976543
No 171
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=40.54 E-value=2e+02 Score=29.98 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.|..+++.+..++..++|..|...+.+|..+.|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5778889999999999999999999999999995
No 172
>PRK12496 hypothetical protein; Provisional
Probab=40.52 E-value=13 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.467 Sum_probs=18.3
Q ss_pred eec-ccCceeEEeecceecccccccCCCCCCe
Q 021106 188 WTA-CPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 188 wta-C~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
|.. |+||.+.|..... .-.|+.|+...
T Consensus 126 w~~~C~gC~~~~~~~~~----~~~C~~CG~~~ 153 (164)
T PRK12496 126 WRKVCKGCKKKYPEDYP----DDVCEICGSPV 153 (164)
T ss_pred eeEECCCCCccccCCCC----CCcCCCCCChh
Confidence 655 9999988863221 14799998653
No 173
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.24 E-value=35 Score=32.65 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
++|.|.++||-++..+||..|..-+....-+.|..+-
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence 4788999999999999999999999999999998553
No 174
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.12 E-value=26 Score=37.25 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.-.+-|..++.-.=..+|.+.|.+++.+|.++||..
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f 454 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF 454 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc
Confidence 3456677766665555899999999999999999963
No 175
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=5.5 Score=36.31 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.+..+++.++...... |+..|.+.+.++...++....
T Consensus 3 ~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~ 39 (306)
T KOG0714|consen 3 KDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP 39 (306)
T ss_pred ccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc
Confidence 4577888899778888 999999999999888885544
No 176
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=39.37 E-value=39 Score=19.98 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAI 34 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~ 34 (317)
-.+.+|.-++..||++.|++.+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567899999999999998865
No 177
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=39.34 E-value=36 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceecccCceeEEeecceecc-cccccCCCCC
Q 021106 187 FWTACPYCYILYEYPRVYEN-CCLRCENCKR 216 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~~-~~l~C~~C~~ 216 (317)
|.=.|..|-..++..+.+-+ ..+.|+.|+.
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 44468888888887654432 3457999987
No 178
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.22 E-value=30 Score=37.52 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=30.6
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeE
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYY 237 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~ 237 (317)
-|+.|..-+.|.+. ...++|+-|+.. ..+|..+|-|.++.--|
T Consensus 446 ~Cp~Cd~~lt~H~~--~~~L~CH~Cg~~---~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 446 ECPNCDSPLTLHKA--TGQLRCHYCGYQ---EPIPQSCPECGSEHLRA 488 (730)
T ss_pred cCCCCCcceEEecC--CCeeEeCCCCCC---CCCCCCCCCCCCCeeEE
Confidence 47888777777653 467899999987 34677778787774444
No 179
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.18 E-value=59 Score=28.44 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=46.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhhCCCCc----ChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHHHH
Q 021106 18 EKLLNQRDLNGSKEFAILAQETEPLLE----GSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLA 93 (317)
Q Consensus 18 ek~l~~~D~~gA~~~a~kA~~l~P~l~----~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La 93 (317)
++++..+||+.+.+.+.+|+.++-... -+..++.-++.....-. ...|+.|.-.+. +.++..+..+.|
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r-----~~l~~~L~~~~~--s~~~~~~~i~~L- 165 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFR-----EKLWEKLLSPPS--SQEEFLKLIRKL- 165 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHhCCCC--CHHHHHHHHHHH-
Confidence 667889999999999999999877652 22233332222221111 144555544442 567888888666
Q ss_pred HHhCCCCCC
Q 021106 94 LLLHPDKNK 102 (317)
Q Consensus 94 ~~~HPDkn~ 102 (317)
+.++++-+|
T Consensus 166 l~L~~~~dP 174 (182)
T PF15469_consen 166 LELNVEEDP 174 (182)
T ss_pred HhCCCCCCH
Confidence 556776553
No 180
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=38.97 E-value=35 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhh
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.++++.+.||+++|++..++|+..
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHH
Confidence 357899999999999999999766
No 181
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=38.73 E-value=50 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhccCHHH--HHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNG--SKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~g--A~~~a~kA~~l~P~l~~ 45 (317)
-|+|..+.-..-++.+.|.| -+++++-++++.+.+.+
T Consensus 12 lAeK~Ve~~~r~~es~~~~G~~rk~~ie~lksi~s~lQ~ 50 (219)
T COG2517 12 LAEKAVELFIRTIESGGFRGWDRKRAIEALKSIESELQA 50 (219)
T ss_pred hhHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHh
Confidence 68888888888888888888 77777777777665443
No 182
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=38.57 E-value=14 Score=31.78 Aligned_cols=34 Identities=18% Similarity=0.585 Sum_probs=23.0
Q ss_pred ceecccCceeEEeecceec----ccccccCCCCCCeee
Q 021106 187 FWTACPYCYILYEYPRVYE----NCCLRCENCKRGFHA 220 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~----~~~l~C~~C~~~F~A 220 (317)
..=.||.|...|++.-... .....|++|+....-
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 3446999999998754321 122789999987744
No 183
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=38.19 E-value=1.2e+02 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.576 Sum_probs=30.8
Q ss_pred eecccCceeEEeecceecccccccCCCCCCeeecccCCCCC
Q 021106 188 WTACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPP 228 (317)
Q Consensus 188 wtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp 228 (317)
+-.|.-|...+.....-..+.+.|.+|..+ +-|...||
T Consensus 80 mvtCRVCq~~i~~egk~~QHVVKC~~CnEA---TPIrnAPp 117 (275)
T KOG4684|consen 80 MVTCRVCQVAISLEGKNQQHVVKCHSCNEA---TPIRNAPP 117 (275)
T ss_pred eEeehhhhHHhccccccceeeEeecccCcc---ccCCCCCC
Confidence 567999999999988888899999999864 44555665
No 184
>PF14353 CpXC: CpXC protein
Probab=37.89 E-value=20 Score=29.76 Aligned_cols=10 Identities=30% Similarity=0.972 Sum_probs=8.4
Q ss_pred ccCCCCCCee
Q 021106 210 RCENCKRGFH 219 (317)
Q Consensus 210 ~C~~C~~~F~ 219 (317)
.|++|+..|.
T Consensus 40 ~CP~Cg~~~~ 49 (128)
T PF14353_consen 40 TCPSCGHKFR 49 (128)
T ss_pred ECCCCCCcee
Confidence 7999999883
No 185
>PRK12370 invasion protein regulator; Provisional
Probab=37.86 E-value=1.6e+02 Score=30.36 Aligned_cols=30 Identities=7% Similarity=-0.157 Sum_probs=23.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 17 AEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 17 Aek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.-++..++++.|...+.+|.+++|....+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 445567889999999999999999975543
No 186
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.31 E-value=99 Score=32.35 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.|+..++.....|..+||..|.+++-+|...+|....
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 44566666688899999999999999999999887543
No 188
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=36.28 E-value=1.1e+02 Score=20.59 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+..+|..++..+++..|...+.++.+..|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 56678888999999999999999999988643
No 189
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=35.30 E-value=30 Score=31.30 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=18.5
Q ss_pred ccccCCCCCCeeecccCCCCCccCCCCe
Q 021106 208 CLRCENCKRGFHAALVPNLPPLVSGKDA 235 (317)
Q Consensus 208 ~l~C~~C~~~F~A~~vp~~Pp~v~G~~~ 235 (317)
...|+.|+++...+....+.+.|+|+|-
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~ 126 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGR 126 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence 4678888887766543345667777753
No 190
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=35.21 E-value=21 Score=27.77 Aligned_cols=35 Identities=20% Similarity=0.569 Sum_probs=21.0
Q ss_pred cccCce----eEEeecceecccccccCCCCCCeeecccCC
Q 021106 190 ACPYCY----ILYEYPRVYENCCLRCENCKRGFHAALVPN 225 (317)
Q Consensus 190 aC~gC~----~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~ 225 (317)
.||+|. ..+...+..-.-.+.|..|+..|... |+.
T Consensus 24 ~CPfC~~~~sV~v~idkk~~~~~~~C~~Cg~~~~~~-i~~ 62 (81)
T PF05129_consen 24 DCPFCNHEKSVSVKIDKKEGIGILSCRVCGESFQTK-INP 62 (81)
T ss_dssp --TTT--SS-EEEEEETTTTEEEEEESSS--EEEEE---S
T ss_pred cCCcCCCCCeEEEEEEccCCEEEEEecCCCCeEEEc-cCc
Confidence 499998 56677776666678999999999554 543
No 191
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=34.46 E-value=10 Score=37.38 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=24.2
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
=..|+|.-|+..|+..-. +.-.-+|++|++.+
T Consensus 244 Y~~TAC~rC~t~y~le~A-~~~~wrCpkCGg~i 275 (403)
T COG1379 244 YHLTACSRCYTRYSLEEA-KSLRWRCPKCGGKI 275 (403)
T ss_pred hhHHHHHHhhhccCcchh-hhhcccCcccccch
Confidence 567999999999876542 22345899999976
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=1.3e+02 Score=29.00 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKK 87 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkk 87 (317)
..++.|.=+++.+|..+++..|..-+.+|.++.|. +.+.++...++|..... ..+..+++.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~-----------------~~~ta~a~~ 214 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAG-----------------QQMTAKARA 214 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcC-----------------CcccHHHHH
Confidence 46889999999999999999999999999999997 45555566666543211 112255677
Q ss_pred HHHHHHHHhCCCCCCc------chHHHHHHHHHHHHHHhcC
Q 021106 88 QYRKLALLLHPDKNKY------PFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 88 aYr~La~~~HPDkn~~------~~A~~~f~~I~eAy~vLsD 122 (317)
.+++...+=|-|.-.. -.-+..++.--.+|+.|-|
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 7776544333332110 1223345666666776654
No 193
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=34.27 E-value=29 Score=29.53 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=7.8
Q ss_pred ccccCCCCCCeee
Q 021106 208 CLRCENCKRGFHA 220 (317)
Q Consensus 208 ~l~C~~C~~~F~A 220 (317)
.-.|++|+.-|.-
T Consensus 9 Kr~Cp~cg~kFYD 21 (129)
T TIGR02300 9 KRICPNTGSKFYD 21 (129)
T ss_pred cccCCCcCccccc
Confidence 4466666666633
No 194
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=34.22 E-value=1.1e+02 Score=30.83 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh--H--------HHHHHHHHHH------------------HHHHhh
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS--D--------QILAVVDVLL------------------AAEKRV 63 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~--~--------~ilav~dvl~------------------aa~~~~ 63 (317)
.+++...++|..+.|++|...+.++..++|.-+-. - .-.+++++-| +|+..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35677788999999999999999999999953311 0 1112222211 111122
Q ss_pred c----CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCC
Q 021106 64 N----NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPD 99 (317)
Q Consensus 64 ~----~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPD 99 (317)
. ...||-.||.|.+.. .|+|+.|..+.-+..-|
T Consensus 179 g~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN---IELKKSLARINSLRERK 215 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc---HHHHHHHHHhcchHhhh
Confidence 2 245999999999973 58999999886654433
No 195
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=33.82 E-value=25 Score=30.85 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=16.1
Q ss_pred cccCCCCCCeeecccCC-CCCcc
Q 021106 209 LRCENCKRGFHAALVPN-LPPLV 230 (317)
Q Consensus 209 l~C~~C~~~F~A~~vp~-~Pp~v 230 (317)
-.|.+|++-|..+|.-. .||+|
T Consensus 29 ReC~~C~~RFTTfE~~El~~~~V 51 (156)
T COG1327 29 RECLECGERFTTFERAELRPLIV 51 (156)
T ss_pred hcccccccccchhheeeeccceE
Confidence 36999999998876655 44555
No 196
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=33.45 E-value=1e+02 Score=27.23 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.++..+..++.++..+++..|...+.++...+|..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~ 67 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP 67 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 566778888888888899998888888888888644
No 197
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=33.32 E-value=35 Score=29.71 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=16.9
Q ss_pred ccccCCCCCCeeecccCC-CCCcc
Q 021106 208 CLRCENCKRGFHAALVPN-LPPLV 230 (317)
Q Consensus 208 ~l~C~~C~~~F~A~~vp~-~Pp~v 230 (317)
.-.|.+|++-|..+|.-. .|+.|
T Consensus 28 RReC~~C~~RFTTyErve~~~l~V 51 (147)
T TIGR00244 28 RRECLECHERFTTFERAELLPPTV 51 (147)
T ss_pred cccCCccCCccceeeeccccccEE
Confidence 346999999999887665 34544
No 198
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.10 E-value=38 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=14.2
Q ss_pred ecccCceeEEeecceecc-cccccCCCCC
Q 021106 189 TACPYCYILYEYPRVYEN-CCLRCENCKR 216 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~-~~l~C~~C~~ 216 (317)
=.|.-|-+.++....+-+ ..+.|+.|+.
T Consensus 6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 345555555554444333 3345666655
No 199
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=33.04 E-value=23 Score=31.74 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=21.1
Q ss_pred cceecccCceeEEeecceecccccccCCCCCC
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
.|.-.|.+|++.|.++. -.|+.|++.
T Consensus 137 ~w~~rC~GC~~~f~~~~------~~Cp~CG~~ 162 (177)
T COG1439 137 KWRLRCHGCKRIFPEPK------DFCPICGSP 162 (177)
T ss_pred eeeEEEecCceecCCCC------CcCCCCCCc
Confidence 77788999999988655 579999876
No 200
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=33.03 E-value=18 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=19.2
Q ss_pred ecccCceeEEeec---ceec-ccccccCCCCC
Q 021106 189 TACPYCYILYEYP---RVYE-NCCLRCENCKR 216 (317)
Q Consensus 189 taC~gC~~~~ey~---r~y~-~~~l~C~~C~~ 216 (317)
.+|.+|.+.+.-. +... +.-+.|++|++
T Consensus 23 ~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgR 54 (56)
T PF02591_consen 23 GTCSGCHMELPPQELNEIRKGDEIVFCPNCGR 54 (56)
T ss_pred CccCCCCEEcCHHHHHHHHcCCCeEECcCCCc
Confidence 4899999988632 2111 34569999987
No 201
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.92 E-value=30 Score=28.52 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=5.2
Q ss_pred ccCCCCCCee
Q 021106 210 RCENCKRGFH 219 (317)
Q Consensus 210 ~C~~C~~~F~ 219 (317)
.|+.|+-.|.
T Consensus 28 vCP~CG~~~~ 37 (108)
T PF09538_consen 28 VCPKCGTEFP 37 (108)
T ss_pred cCCCCCCccC
Confidence 4555555553
No 202
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=32.41 E-value=37 Score=17.69 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhc
Q 021106 109 AFTLVVDAWGVLS 121 (317)
Q Consensus 109 ~f~~I~eAy~vLs 121 (317)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 203
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=32.11 E-value=22 Score=31.74 Aligned_cols=35 Identities=31% Similarity=0.774 Sum_probs=19.7
Q ss_pred ccceecccCceeEEeecceec-------ccccccCCCCCCee
Q 021106 185 SSFWTACPYCYILYEYPRVYE-------NCCLRCENCKRGFH 219 (317)
Q Consensus 185 ~tFwtaC~gC~~~~ey~r~y~-------~~~l~C~~C~~~F~ 219 (317)
..|+-.|+.|.+.+.|+..+. ..-+.|++|+..+.
T Consensus 15 ~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~ 56 (188)
T PF08996_consen 15 EPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLS 56 (188)
T ss_dssp --EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--
T ss_pred CceEeECCCCCCCccccccccCCccccccCcCcCCCCCCcCC
Confidence 489999999999999987655 33568999998664
No 204
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=32.08 E-value=21 Score=23.83 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=8.1
Q ss_pred cccCCCCCCeee
Q 021106 209 LRCENCKRGFHA 220 (317)
Q Consensus 209 l~C~~C~~~F~A 220 (317)
-+|+.|++.||=
T Consensus 3 ~~CprC~kg~Hw 14 (36)
T PF14787_consen 3 GLCPRCGKGFHW 14 (36)
T ss_dssp -C-TTTSSSCS-
T ss_pred ccCcccCCCcch
Confidence 479999999975
No 205
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=31.91 E-value=1.7e+02 Score=25.99 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHH-HhccC--HHHHHHHHHHHHhhCCCCcChHHHHH
Q 021106 9 EAERLLGVAEKL-LNQRD--LNGSKEFAILAQETEPLLEGSDQILA 51 (317)
Q Consensus 9 eA~r~~~iAek~-l~~~D--~~gA~~~a~kA~~l~P~l~~~~~ila 51 (317)
.++-+...|..+ +..++ ...|+..+.+|.+++|....+--+++
T Consensus 106 ~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 106 NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 455666677764 56666 48888888888888887554443333
No 206
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.84 E-value=1.2e+02 Score=22.02 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|...+..|.+.=..+++..|..++.+|...
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56888899999999999999999999887544
No 207
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=31.73 E-value=2.9e+02 Score=26.08 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhc
Q 021106 82 QDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLS 121 (317)
Q Consensus 82 ~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLs 121 (317)
...++|.|++||+-+--.... .-.+.+..+-|-|++|.
T Consensus 95 ~~l~~ksykqla~d~gmqi~~--~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 95 ETLPKKSYKQLARDMGMQIVN--EPSEHMLGLLELYEYLK 132 (268)
T ss_pred hhcchHHHHHHHHHhCceecC--CchHHHHHHHHHHHhcC
Confidence 467899999999876543322 22356777788888885
No 208
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.39 E-value=45 Score=34.43 Aligned_cols=43 Identities=28% Similarity=0.601 Sum_probs=29.8
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeE
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYY 237 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~ 237 (317)
.|+.|..-..|.+. ...+.|+.|+... .+|...|.|.+..+.+
T Consensus 224 ~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~---~~~~~Cp~C~s~~l~~ 266 (505)
T TIGR00595 224 CCPNCDVSLTYHKK--EGKLRCHYCGYQE---PIPKTCPQCGSEDLVY 266 (505)
T ss_pred CCCCCCCceEEecC--CCeEEcCCCcCcC---CCCCCCCCCCCCeeEe
Confidence 48888877777653 5578999999655 4566667777654433
No 209
>PRK11189 lipoprotein NlpI; Provisional
Probab=31.02 E-value=1.7e+02 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=18.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+..++.-++..++++.|...+.+|.+++|...
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34444555666666666666666666666543
No 210
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.87 E-value=42 Score=33.54 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=18.5
Q ss_pred ccccccCCCCCCeeecccCCCCCccCCCCeeEecccceecccc
Q 021106 206 NCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPLGFV 248 (317)
Q Consensus 206 ~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~gf~ 248 (317)
.....|+.|+++..-+ ..|.+.|.|++. .-.|-.+-+--|
T Consensus 181 ~~~~~C~~C~G~G~~i--~~pC~~C~G~G~-v~~~~~i~V~IP 220 (371)
T COG0484 181 SFQQTCPTCNGTGKII--KDPCGKCKGKGR-VKKKKSISVNIP 220 (371)
T ss_pred EEEEECCCCccceeEC--CCCCCCCCCCCe-EeeeeEEEEECC
Confidence 3344566666555433 333445555543 334444444443
No 211
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.76 E-value=35 Score=33.40 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=26.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
.|..++.++.+.+|..+.++++.++|..+..
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~ 315 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQD 315 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHH
Confidence 3567899999999999999999999986653
No 212
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=30.59 E-value=28 Score=30.03 Aligned_cols=30 Identities=30% Similarity=0.646 Sum_probs=22.0
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
=|+.+|+.|.+...... +..-.|..|++.+
T Consensus 32 ~~Y~aC~~C~kkv~~~~---~~~~~C~~C~~~~ 61 (166)
T cd04476 32 WWYPACPGCNKKVVEEG---NGTYRCEKCNKSV 61 (166)
T ss_pred eEEccccccCcccEeCC---CCcEECCCCCCcC
Confidence 56689999988775432 1356999999876
No 213
>PRK10220 hypothetical protein; Provisional
Probab=30.48 E-value=30 Score=28.67 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=24.4
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAAL 222 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~ 222 (317)
-.||.|...|.|.- +..+.|+.|..-+.+.+
T Consensus 4 P~CP~C~seytY~d---~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 4 PHCPKCNSEYTYED---NGMYICPECAHEWNDAE 34 (111)
T ss_pred CcCCCCCCcceEcC---CCeEECCcccCcCCccc
Confidence 36999999998865 34569999999886554
No 214
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=30.37 E-value=17 Score=35.33 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.5
Q ss_pred ccccceecccCceeEEeecceec
Q 021106 183 RLSSFWTACPYCYILYEYPRVYE 205 (317)
Q Consensus 183 ~~~tFwtaC~gC~~~~ey~r~y~ 205 (317)
..+-|.|+|..|.-+|.|.+.+.
T Consensus 143 HGNmfiEvC~sC~~~yvr~~~v~ 165 (353)
T KOG1905|consen 143 HGNMFIEVCKSCRPEYVRDRVVD 165 (353)
T ss_pred hcchHHHHhhhhcccceehhhee
Confidence 34589999999999999987665
No 215
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=1.6e+02 Score=31.33 Aligned_cols=75 Identities=23% Similarity=0.185 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCC--------CCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCH
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEP--------LLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQ 82 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P--------~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~ 82 (317)
+.+-..|-.++..++|..|.+.+++|.+++- .-+++..-+.++.|.++ | ||++--. +
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-----------y-VlQ~~Gq--t- 240 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-----------Y-VLQLQGQ--T- 240 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-----------H-HHHHhcc--h-
Confidence 4556677789999999999999999943322 23456666677777776 4 4444422 3
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 021106 83 DLIKKQYRKLALLLHPDK 100 (317)
Q Consensus 83 ~eIkkaYr~La~~~HPDk 100 (317)
+|-.+-|..+....|+|-
T Consensus 241 ~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 577888999999999995
No 216
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=1.3e+02 Score=28.85 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
+-|+++.+...+++..+.|..|...+.+|..+.|+-....
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~ 47 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYY 47 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhh
Confidence 3588999999999999999999999999999999865443
No 217
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=29.71 E-value=15 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.747 Sum_probs=23.4
Q ss_pred eecccCceeEEeecceec-----ccccccCCCCCC
Q 021106 188 WTACPYCYILYEYPRVYE-----NCCLRCENCKRG 217 (317)
Q Consensus 188 wtaC~gC~~~~ey~r~y~-----~~~l~C~~C~~~ 217 (317)
..+|..|..+.+.+..+. .+.++|..|..-
T Consensus 6 Fv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 6 FVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred EeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 468999999999887655 346799999864
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=29.14 E-value=2e+02 Score=20.61 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.|.-+..+|.-+...++++.|..++.+|..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999877
No 219
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=28.82 E-value=28 Score=33.02 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=0.0
Q ss_pred ccCceeEEe---ecceecccccccCCCCCCeeec---ccCCCCCccCCCCeeEeccccee
Q 021106 191 CPYCYILYE---YPRVYENCCLRCENCKRGFHAA---LVPNLPPLVSGKDAYYCCWGFFP 244 (317)
Q Consensus 191 C~gC~~~~e---y~r~y~~~~l~C~~C~~~F~A~---~vp~~Pp~v~G~~~~~c~wgffp 244 (317)
|..|++.|+ ..+-+=--.-.|++|++.|-+. ++++|. |-|..-.+|
T Consensus 135 Cr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~~qm~v~sPC--------y~C~~~v~P 186 (278)
T PF15135_consen 135 CRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGFAQMGVPSPC--------YGCGNPVYP 186 (278)
T ss_pred ccccccccCCCccccccceeeeecccccccchhhhhcCCCCCc--------cCCCCccCc
No 220
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=28.65 E-value=32 Score=21.92 Aligned_cols=24 Identities=33% Similarity=0.793 Sum_probs=12.1
Q ss_pred cccCceeEEeecceecccccccCCCCC
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKR 216 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~ 216 (317)
.|+.|...+.|.- +..+.|+.|..
T Consensus 4 ~Cp~C~se~~y~D---~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTYED---GELLVCPECGH 27 (30)
T ss_dssp --TTT-----EE----SSSEEETTTTE
T ss_pred CCCCCCCcceecc---CCEEeCCcccc
Confidence 5899999988833 45568999974
No 221
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=28.57 E-value=2.7e+02 Score=21.37 Aligned_cols=32 Identities=38% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|+..++.|+.++..+++..|..++..|.+.
T Consensus 6 ~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~ 37 (118)
T PF05168_consen 6 EKAEEDLKAAEILLEEGDYNWAVFHAYQAVEK 37 (118)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988877544
No 222
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=28.39 E-value=1.4e+02 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcc-CHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 021106 13 LLGVAEKLLNQR-DLNGSKEFAILAQETEPLLEGSDQILAVVD 54 (317)
Q Consensus 13 ~~~iAek~l~~~-D~~gA~~~a~kA~~l~P~l~~~~~ilav~d 54 (317)
-+.+.|.++..+ +..++..++-+|...+|. ..++|.+++
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q---P~~LL~iyq 132 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQ---PQQLLSIYQ 132 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 456779999999 899999999999999984 444554443
No 223
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=28.27 E-value=1.1e+02 Score=24.11 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILA 36 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA 36 (317)
--.||.+.+|..++.+||..-|..+++-|
T Consensus 37 ql~EKY~~LArDA~ssGDrV~aEny~QHA 65 (80)
T PF13763_consen 37 QLIEKYNQLARDAQSSGDRVLAENYLQHA 65 (80)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35789999999999999999999998877
No 224
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.16 E-value=31 Score=28.33 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=19.3
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..--.|..|...++.... ...||.|+...
T Consensus 68 p~~~~C~~Cg~~~~~~~~----~~~CP~Cgs~~ 96 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEF----DFSCPRCGSPD 96 (113)
T ss_dssp --EEEETTTS-EEECHHC----CHH-SSSSSS-
T ss_pred CCcEECCCCCCEEecCCC----CCCCcCCcCCC
Confidence 455669999999988764 36799999875
No 225
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.15 E-value=53 Score=35.29 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=28.6
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeE
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYY 237 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~ 237 (317)
-.|+.|..-..|.+. ...++|+-|+..- +|...|.|.++..-+
T Consensus 393 ~~C~~C~~~L~~h~~--~~~l~Ch~CG~~~----~p~~Cp~Cgs~~l~~ 435 (665)
T PRK14873 393 ARCRHCTGPLGLPSA--GGTPRCRWCGRAA----PDWRCPRCGSDRLRA 435 (665)
T ss_pred eECCCCCCceeEecC--CCeeECCCCcCCC----cCccCCCCcCCccee
Confidence 358888877777552 3468999999642 466677777764333
No 226
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.39 E-value=55 Score=35.07 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=28.2
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCC
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKD 234 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~ 234 (317)
.|+.|..-..|.+. ...+.|+.|+... .+|...|.|.+..
T Consensus 392 ~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~---~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 392 ECPHCDASLTLHRF--QRRLRCHHCGYQE---PIPKACPECGSTD 431 (679)
T ss_pred CCCCCCCceeEECC--CCeEECCCCcCCC---CCCCCCCCCcCCe
Confidence 58888877777653 4578999999664 4566667776654
No 227
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.33 E-value=34 Score=28.50 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=17.0
Q ss_pred ccCceeEEeecceecccccccCCCCCCe
Q 021106 191 CPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 191 C~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
||-|.......+ +.|++|+-..
T Consensus 1 CPvCg~~l~vt~------l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVTR------LKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEEEE------EEcCCCCCEE
Confidence 788888877766 8899998544
No 228
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.23 E-value=1.5e+02 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVD 54 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~d 54 (317)
+++.|.+|..++++....++..|..+++ ...++|.|+.
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcg---qpaqLL~vlq 122 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCG---QPAQLLQVLQ 122 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 6778999999999999999999999988 4556665543
No 229
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=27.20 E-value=1.4e+02 Score=31.14 Aligned_cols=36 Identities=14% Similarity=-0.147 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+..+..++.-++..++++.|+..+.++..++|...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 334444555566778999999999999999999754
No 230
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=27.08 E-value=34 Score=24.18 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=17.2
Q ss_pred CCeeecccCCCCC---ccCCCCeeEeccc
Q 021106 216 RGFHAALVPNLPP---LVSGKDAYYCCWG 241 (317)
Q Consensus 216 ~~F~A~~vp~~Pp---~v~G~~~~~c~wg 241 (317)
+.|.++.+|++|+ -|=|+|..-|.|-
T Consensus 1 ~~~~gv~~P~~P~~p~~CCgSGC~~CVwd 29 (48)
T PF09791_consen 1 QTIAGVPVPPKPPEPDECCGSGCAPCVWD 29 (48)
T ss_pred CccCCCCCCcCccCcccccccCCccchhH
Confidence 4577888998765 3446666666663
No 231
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=26.69 E-value=2.1e+02 Score=23.86 Aligned_cols=36 Identities=31% Similarity=0.136 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.....++..++..+++..|...+.++...+|...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 65 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY 65 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 467777888889999999999999999988888643
No 232
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=26.55 E-value=37 Score=28.10 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=23.3
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecc
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAAL 222 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~ 222 (317)
.||.|...|.|.- ...+.|+.|...+...+
T Consensus 4 ~CP~C~seytY~d---g~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 4 PCPKCNSEYTYHD---GTQLICPSCLYEWNENE 33 (109)
T ss_pred cCCcCCCcceEec---CCeeECccccccccccc
Confidence 6999999998865 34569999998885443
No 233
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=26.32 E-value=2.3e+02 Score=31.89 Aligned_cols=90 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC---------hHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG---------SDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQD 83 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~---------~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~ 83 (317)
++..|.-++..+||.+|..++.+|.+..|.... +.++-..-.++++.++ +|+|+|...+ .
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r----------alqLdp~~v~-a 235 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER----------ALQLDPTCVS-A 235 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH----------HHhcChhhHH-H
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Q 021106 84 LIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGV 119 (317)
Q Consensus 84 eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~v 119 (317)
-|--.+-.|...-| ..-...+.+++.||.+
T Consensus 236 lv~L~~~~l~~~d~------~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDS------DSYKKGVQLLQRAYKE 265 (1018)
T ss_pred HHHHHHHHHHccch------HHHHHHHHHHHHHHhh
No 234
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.21 E-value=63 Score=22.15 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHhccCHH
Q 021106 5 SNRAEAERLLGVAEKLLNQRDLN 27 (317)
Q Consensus 5 ~~r~eA~r~~~iAek~l~~~D~~ 27 (317)
++..||+.++..|.+++..-+++
T Consensus 19 ~~~~EA~~A~~kAq~Lm~ky~i~ 41 (43)
T PF10979_consen 19 SNEHEAEAALAKAQRLMAKYGID 41 (43)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCc
Confidence 45667777777777777665544
No 235
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=26.19 E-value=37 Score=30.74 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=21.2
Q ss_pred ceecccCceeEEeecceecccccccCCCCCC
Q 021106 187 FWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
-...|.-|.....+ .+..|+|++|+.+
T Consensus 148 I~A~CsrC~~~L~~----~~~~l~Cp~Cg~t 174 (188)
T COG1096 148 IYARCSRCRAPLVK----KGNMLKCPNCGNT 174 (188)
T ss_pred EEEEccCCCcceEE----cCcEEECCCCCCE
Confidence 34579999988887 3568999999864
No 236
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.55 E-value=42 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=19.7
Q ss_pred eecccCceeEEeecceecccccccCCCCCCe
Q 021106 188 WTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 188 wtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
.--|+.|...+..... ...||.|+...
T Consensus 70 ~~~C~~Cg~~~~~~~~----~~~CP~Cgs~~ 96 (115)
T TIGR00100 70 ECECEDCSEEVSPEID----LYRCPKCHGIM 96 (115)
T ss_pred EEEcccCCCEEecCCc----CccCcCCcCCC
Confidence 3459999988877542 46799999765
No 237
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.33 E-value=2e+02 Score=18.72 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHH--HHHHHhhCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEF--AILAQETEP 41 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~--a~kA~~l~P 41 (317)
+-|...|-...+.+++++|.++ +.-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4577889999999999999999 447777765
No 238
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=25.02 E-value=44 Score=27.53 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=24.4
Q ss_pred ceecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeE
Q 021106 187 FWTACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYY 237 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~ 237 (317)
-.--|+.|...++.... ...||+|+..-+ -++.|.+++.
T Consensus 69 ~~~~C~~Cg~~~~~~~~----~~~CP~Cgs~~~--------~i~~G~El~i 107 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQH----DAQCPHCHGERL--------RVDTGDSLIV 107 (113)
T ss_pred cEEEcccCCCEEecCCc----CccCcCCCCCCc--------EEccCCeEEE
Confidence 34459999877776532 356999996531 2356666553
No 239
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.01 E-value=38 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.801 Sum_probs=22.5
Q ss_pred cceecccCceeEEeecceecccccccCCCCCC
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
--+-.|..|...+.|.| +.|++|+.+
T Consensus 208 ~RyL~CslC~teW~~~R------~~C~~Cg~~ 233 (305)
T TIGR01562 208 LRYLSCSLCATEWHYVR------VKCSHCEES 233 (305)
T ss_pred ceEEEcCCCCCcccccC------ccCCCCCCC
Confidence 35678999999999998 899999865
No 240
>PRK10996 thioredoxin 2; Provisional
Probab=24.89 E-value=39 Score=28.28 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=25.9
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeee
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
|.|++|...++.+-.-..-...|+.|.-+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (139)
T PRK10996 3 TVCTSCQAINRLPDERIEDAAKCGRCGHDLFD 34 (139)
T ss_pred EECCCCCCcCCCCCccccCCCcCCCCCCccCC
Confidence 78999999998887666667789999877643
No 241
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=24.74 E-value=1.1e+02 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.-+..++.-++..+++..|...+.++....|.
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34566778788889999999999888877664
No 242
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.73 E-value=38 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.697 Sum_probs=23.6
Q ss_pred cccCceeEEeecceecccccccCCCCCCeee
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
.|+-|...|.|.-.. +..-.|+.|+...+-
T Consensus 119 ~Cp~C~~rytf~eA~-~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 119 FCPNCHIRFTFDEAM-EYGFRCPQCGEMLEE 148 (178)
T ss_pred ECCCCCcEEeHHHHh-hcCCcCCCCCCCCee
Confidence 689999999987653 346799999987754
No 243
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.63 E-value=2.2e+02 Score=22.25 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=32.4
Q ss_pred eeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchH----HHHHHHHHHHHHHhcC
Q 021106 70 YSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFA----DQAFTLVVDAWGVLSD 122 (317)
Q Consensus 70 Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A----~~~f~~I~eAy~vLsD 122 (317)
-.+.++.+.+ +.+||+.+-.+..+++.=-..++... +.+-..|..+-..|-|
T Consensus 6 ~~L~~fePpa-T~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 6 KTLRNFEPPA-TDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hhhcCCCCCC-CHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456778877 56999999888888885444443333 3344555555555543
No 244
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=24.58 E-value=35 Score=22.54 Aligned_cols=17 Identities=29% Similarity=0.678 Sum_probs=11.3
Q ss_pred cccCCCCCCeeecccCC
Q 021106 209 LRCENCKRGFHAALVPN 225 (317)
Q Consensus 209 l~C~~C~~~F~A~~vp~ 225 (317)
..|++|++.||-.-.|+
T Consensus 2 r~C~~Cg~~Yh~~~~pP 18 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP 18 (36)
T ss_dssp EEETTTTEEEETTTB--
T ss_pred cCcCCCCCccccccCCC
Confidence 46888888888665554
No 245
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=24.42 E-value=2.1e+02 Score=32.58 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
.+-+...++-++..+|+++|...+.++.++.|....+.
T Consensus 62 p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~ 99 (1157)
T PRK11447 62 PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYR 99 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHH
Confidence 34455567888999999999999999999999866543
No 246
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=24.39 E-value=2.3e+02 Score=31.60 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQIL 50 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~il 50 (317)
.|..+.+.+|.-++..||+..|.+++....+.+|....+=..|
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL 179 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTL 179 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence 3678899999999999999999999999999999866543333
No 247
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=24.35 E-value=37 Score=31.51 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRK 91 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~ 91 (317)
++++.-..+|...+.......+....-..+....+..|... ...+ .+...+|..|.-.+- +..++...+..
T Consensus 4 ~~l~~~~~~f~~~~~~~~~~~~l~gll~~~~rksv~~i~~~----~~~~---~~~~sl~~fls~~~w--d~~~l~~~l~~ 74 (273)
T PF13546_consen 4 QFLQRFRPLFTRLRQRRHFELYLDGLLSAGGRKSVTNIARA----LFGE---RDYQSLYRFLSRSPW--DWRRLRRRLAR 74 (273)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHHhccCCCCCcHHHHHHH----hcCC---CChhHHhhhhccccc--CHHHHHHHHHH
Confidence 44444555555554444444444444444433333333221 0000 012255666555443 44556666555
Q ss_pred HHHH
Q 021106 92 LALL 95 (317)
Q Consensus 92 La~~ 95 (317)
+...
T Consensus 75 ~~~~ 78 (273)
T PF13546_consen 75 LVLR 78 (273)
T ss_pred HHhh
Confidence 4443
No 248
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=24.29 E-value=2.6e+02 Score=23.46 Aligned_cols=36 Identities=11% Similarity=-0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
..+|.-+..++..++..+++.+|...+.+|..+.|.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 67 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID 67 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc
Confidence 347888888999999999999999999999888765
No 249
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=24.06 E-value=1.2e+02 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|++.++.|+.++..+++..|-.++++|.+.
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavEk 33 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAEL 33 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 46889999999999999999999988887544
No 250
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.03 E-value=39 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=12.5
Q ss_pred cccC--ceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPY--CYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~g--C~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
-||. |...+.....-....+.|+.|+..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~f 50 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEF 50 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEE
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcC
Confidence 6766 8877776554322236677666555
No 251
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.02 E-value=1.9e+02 Score=21.40 Aligned_cols=34 Identities=24% Similarity=0.107 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.-++|...+..|.+.=..+++..|..++..|.+.
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467888888888888899999999999888554
No 252
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=23.94 E-value=33 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=17.6
Q ss_pred ccccCCCCCCeeecc-cCCCCCccCCCCeeEeccc
Q 021106 208 CLRCENCKRGFHAAL-VPNLPPLVSGKDAYYCCWG 241 (317)
Q Consensus 208 ~l~C~~C~~~F~A~~-vp~~Pp~v~G~~~~~c~wg 241 (317)
.++|..|++.|.... + -+-...|+..+||++.
T Consensus 6 ~~~C~~C~~~~~~~~~~--~~~~~~g~~~~FCS~~ 38 (43)
T PF06467_consen 6 MKTCSYCKKYIPNKPTM--IEVQYDGKMKQFCSQS 38 (43)
T ss_dssp CEE-TTT--EEECCC------EE-TTTTSCCSSHH
T ss_pred CCcCcccCCcccCCCcc--ccccccCcccChhCHH
Confidence 568999999994443 2 1223467778898874
No 253
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=23.78 E-value=2.3e+02 Score=23.99 Aligned_cols=38 Identities=13% Similarity=-0.151 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
..+|.-....+..++..+|+..|...+.++..+.|...
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 35677778888888999999999999999988877543
No 254
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.43 E-value=39 Score=29.42 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=23.5
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeee
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
=.|+-|...|.|.-... ..-.|+.|+....-
T Consensus 110 Y~Cp~c~~r~tf~eA~~-~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 110 FICPNMCVRFTFNEAME-LNFTCPRCGAMLDY 140 (158)
T ss_pred EECCCCCcEeeHHHHHH-cCCcCCCCCCEeee
Confidence 36899999998877543 35689999987643
No 255
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=23.36 E-value=55 Score=26.81 Aligned_cols=37 Identities=27% Similarity=0.506 Sum_probs=23.6
Q ss_pred cceecccCceeEEee----cceecccccccCCCCCCeeecccCC
Q 021106 186 SFWTACPYCYILYEY----PRVYENCCLRCENCKRGFHAALVPN 225 (317)
Q Consensus 186 tFwtaC~gC~~~~ey----~r~y~~~~l~C~~C~~~F~A~~vp~ 225 (317)
+| .||.|.++--. .+..---.+.|.+|+.+| +.+||+
T Consensus 22 ~F--tCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~-e~ev~~ 62 (104)
T COG4888 22 TF--TCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSF-ECEVPE 62 (104)
T ss_pred eE--ecCccCCeeeeEEEEEecCceeEEEcccCcceE-EEeccc
Confidence 55 49999876544 222222345899999998 455654
No 256
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.27 E-value=1.7e+02 Score=22.23 Aligned_cols=34 Identities=18% Similarity=-0.008 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+-++|..++..|.+.-..+++..|..++..+.+.
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999988655
No 257
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=23.09 E-value=1.4e+02 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
|.-+..++.-+...+|++.|..++.+|..+
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566667777777888888888888888665
No 258
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=23.00 E-value=75 Score=26.80 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCc-cCceeeeecccCCC---CHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcC
Q 021106 51 AVVDVLLAAEKRVNNH-HDWYSILQIDRRTD---DQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 51 av~dvl~aa~~~~~~~-~D~Y~VLgv~~~a~---~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsD 122 (317)
.+...+...+.++..- .-||+||+-++... +.++....=|-+ ....|++..+..||-+|||
T Consensus 3 evl~el~~vq~RL~Pflery~~iL~~~~~~e~~~~~~~re~~QRi~-----------d~VsEalh~lsHA~hAlSD 67 (120)
T PF12057_consen 3 EVLQELRRVQERLQPFLERYHEILQEDPSFEYENNTQEREEDQRIF-----------DLVSEALHYLSHAYHALSD 67 (120)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCccchhhHhHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555332 26889998887531 111111111111 1234566667777777776
No 259
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=22.98 E-value=60 Score=27.77 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.8
Q ss_pred eecccCce-eEEeecceecccccccCCCCCCeeecccCC
Q 021106 188 WTACPYCY-ILYEYPRVYENCCLRCENCKRGFHAALVPN 225 (317)
Q Consensus 188 wtaC~gC~-~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~ 225 (317)
-+.||-|. -+|+++. .+.|+.|...+.-++.+.
T Consensus 28 ~~hCp~Cg~PLF~KdG-----~v~CPvC~~~~~~v~~e~ 61 (131)
T COG1645 28 AKHCPKCGTPLFRKDG-----EVFCPVCGYREVVVEEEE 61 (131)
T ss_pred HhhCcccCCcceeeCC-----eEECCCCCceEEEeeccc
Confidence 46799996 5777666 699999999887776654
No 260
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.83 E-value=1.8e+02 Score=22.23 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
...|...+..|.++=..+++..|..++..|...
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467888888899999999999999999988544
No 261
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=22.76 E-value=41 Score=27.29 Aligned_cols=44 Identities=25% Similarity=0.745 Sum_probs=18.7
Q ss_pred ceeEEeecceecc---cccccCCCCCCeee--cccCCCCCccCCCCeeEecccc
Q 021106 194 CYILYEYPRVYEN---CCLRCENCKRGFHA--ALVPNLPPLVSGKDAYYCCWGF 242 (317)
Q Consensus 194 C~~~~ey~r~y~~---~~l~C~~C~~~F~A--~~vp~~Pp~v~G~~~~~c~wgf 242 (317)
|...+ ++..|.. .++.|..|+.-|.- ..+.+- ...+-+.|.|||
T Consensus 12 c~G~f-~P~lY~~~~a~CI~C~~C~~~FsP~kFV~HsH----r~~e~~t~hwgf 60 (96)
T PF08782_consen 12 CRGSF-IPELYSSPNAKCIECLECRGMFSPQKFVFHSH----RPQEKRTCHWGF 60 (96)
T ss_dssp EEEEE--GGG--STT---EEETTT--EE-HHHHTT--S----S---TTEEEES-
T ss_pred cceEe-chhhcCCCCCCceEcccCCCEeCCcCEEEecC----CCCCCccCCCcc
Confidence 55554 3555665 68999999998821 011110 122346788987
No 262
>PF15616 TerY-C: TerY-C metal binding domain
Probab=22.73 E-value=50 Score=28.22 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=25.2
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEecccceeccc
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPLGF 247 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~gf 247 (317)
-||+|-.++-| .+| +|++-| . +.|.+...|+|.=--..|
T Consensus 79 gCP~CGn~~~f--------a~C-~CGkl~--------C--i~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 79 GCPHCGNQYAF--------AVC-GCGKLF--------C--IDGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCcChhcE--------EEe-cCCCEE--------E--eCCCCCEECCCCCCeeee
Confidence 47888777655 566 687766 1 366667788886544433
No 263
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=22.70 E-value=3.5e+02 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+..+..++..++..+++..|..++.++.+++|..
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4456667777888888888888888888888764
No 264
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.60 E-value=41 Score=22.60 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=14.1
Q ss_pred cccCceeEEeecceecccccccCCCC
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCK 215 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~ 215 (317)
.||.|.... +--.+..-.+.|.+|+
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 477776543 2222445567888884
No 265
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=22.59 E-value=1.7e+02 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++.-+...++++.|..++.+|.+++|...
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 34455666667778888888888888888887654
No 266
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=22.58 E-value=1.6e+02 Score=28.08 Aligned_cols=38 Identities=13% Similarity=-0.060 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
++-|-.++..+.+.|++++|+.-+.+|.++.|.-+.+-
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 33444445555556666666666666666655544433
No 267
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.53 E-value=49 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.609 Sum_probs=15.3
Q ss_pred ceecccCceeEEeecceecccccccCCCCCCe
Q 021106 187 FWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 187 FwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
-+-.|..|...+.|.| +.|++|+..-
T Consensus 196 R~L~Cs~C~t~W~~~R------~~Cp~Cg~~~ 221 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVR------IKCPYCGNTD 221 (290)
T ss_dssp EEEEETTT--EEE--T------TS-TTT---S
T ss_pred EEEEcCCCCCeeeecC------CCCcCCCCCC
Confidence 5678999999999988 7899999643
No 268
>PRK12366 replication factor A; Reviewed
Probab=22.42 E-value=53 Score=35.05 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=20.7
Q ss_pred cceecccCceeEEeecceecccccccCCCCCC
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
-++.+||.|.+..... +-.-+|+.|++.
T Consensus 530 ~~y~aCp~CnkKv~~~----~g~~~C~~c~~~ 557 (637)
T PRK12366 530 IILYLCPNCRKRVEEV----DGEYICEFCGEV 557 (637)
T ss_pred EEEecccccCeEeEcC----CCcEECCCCCCC
Confidence 6779999998877531 234589999976
No 269
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.38 E-value=1e+02 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=16.0
Q ss_pred eecccCceeEEeecceecccccccCCCCCCe
Q 021106 188 WTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 188 wtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
.--|+.|...+..... ....||.|+..-
T Consensus 70 ~~~C~~Cg~~~~~~~~---~~~~CP~Cgs~~ 97 (114)
T PRK03681 70 ECWCETCQQYVTLLTQ---RVRRCPQCHGDM 97 (114)
T ss_pred EEEcccCCCeeecCCc---cCCcCcCcCCCC
Confidence 3447777766654321 125688888543
No 270
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.19 E-value=1.5e+02 Score=31.06 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQI 49 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~i 49 (317)
|.|.+++|.+.+..|||.=+.+.+.++.-.+|.-..+..+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L 491 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAAREL 491 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHH
Confidence 6899999999999999999999999999999976544433
No 271
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.85 E-value=2.6e+02 Score=26.34 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHH-HHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHHH
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQIL-AVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKL 92 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~il-av~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~L 92 (317)
.-+++-++..+|+.+|...+.++...+|.-+.....+ .+..++ .-+ - +.++-++.|.++
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~--------------~~~-----g-~~~~A~~~~~~v 243 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM--------------QDK-----G-DTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH--------------HHc-----C-CHHHHHHHHHHH
Confidence 3448888999999999999999999999765543322 221111 111 1 456778888866
Q ss_pred HHHhCCCCC
Q 021106 93 ALLLHPDKN 101 (317)
Q Consensus 93 a~~~HPDkn 101 (317)
...+|+..
T Consensus 244 -i~~yP~s~ 251 (263)
T PRK10803 244 -IKKYPGTD 251 (263)
T ss_pred -HHHCcCCH
Confidence 55677765
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=21.67 E-value=1.3e+02 Score=28.92 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHH
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYR 90 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr 90 (317)
.-+.+.||.++..++++.+...+.+...++|..+.+- +.++..--..-++.....+|+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~----------------------~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAY----------------------LRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHH----------------------HHHHHHHHHcCCchHHHHHHH
Confidence 3455667888888889999999888888888765432 111111111113567888999
Q ss_pred HHHHHhCCCCCCcc
Q 021106 91 KLALLLHPDKNKYP 104 (317)
Q Consensus 91 ~La~~~HPDkn~~~ 104 (317)
++...+--|-...|
T Consensus 212 ~l~~~~~edlgi~P 225 (280)
T COG3629 212 QLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHhhhhcCCCc
Confidence 99887655554443
No 273
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=21.59 E-value=91 Score=23.00 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++....|...=..||...|++|.+-++.+++.
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~ 40 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAKQFDDA 40 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHH
Confidence 34556677788999999999999998877653
No 274
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=4.5e+02 Score=27.10 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
..-+.|...++.++..|.+..|...+-.|..++|.
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 45677888999999999999999999999999997
No 275
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.17 E-value=46 Score=31.30 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=20.1
Q ss_pred ecccCceeEEeec-----ceecccccccCCCCCCe
Q 021106 189 TACPYCYILYEYP-----RVYENCCLRCENCKRGF 218 (317)
Q Consensus 189 taC~gC~~~~ey~-----r~y~~~~l~C~~C~~~F 218 (317)
.+|-||.+.+--. +. -+.-+.||.|++-.
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~-~d~iv~CP~CgRIL 231 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRK-KDEIVFCPYCGRIL 231 (239)
T ss_pred CcccCCeeeecHHHHHHHhc-CCCCccCCccchHH
Confidence 6899999887421 11 35556899999743
No 276
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=21.14 E-value=34 Score=20.65 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=12.2
Q ss_pred cccCceeEEeecceecccccccCCCCCC
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
.|+.|-..++-. ...|++|+..
T Consensus 4 ~Cp~Cg~~~~~~------~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEIDPD------AKFCPNCGAK 25 (26)
T ss_pred CCcccCCcCCcc------cccChhhCCC
Confidence 466666644332 3567777653
No 277
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.11 E-value=5.6e+02 Score=24.32 Aligned_cols=91 Identities=16% Similarity=0.001 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh--------------HHHHHHHHHHHHHHHh-hcCccCceeeee
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS--------------DQILAVVDVLLAAEKR-VNNHHDWYSILQ 74 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~--------------~~ilav~dvl~aa~~~-~~~~~D~Y~VLg 74 (317)
...|+.+|.-+...++.+.|.+.+++|..++|.-..+ ++...-++..+ +.. ....-|-|+-||
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al--~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL--ADPAYGEPSDTLENLG 146 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHH--hCCCCCCcchhhhhhH
Confidence 3456667888889999999999999999999975433 12222222111 111 111224555566
Q ss_pred cccCCCCHHHHHHHHHHHHHHhCCCCCC
Q 021106 75 IDRRTDDQDLIKKQYRKLALLLHPDKNK 102 (317)
Q Consensus 75 v~~~a~~~~eIkkaYr~La~~~HPDkn~ 102 (317)
+=..-....+-.+.|-+.++.+.|+...
T Consensus 147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 147 LCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred HHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 5322112345677788888999888653
No 278
>PRK11189 lipoprotein NlpI; Provisional
Probab=20.93 E-value=3.5e+02 Score=25.37 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.++.+..++.-+...+|++.|...+.+|..++|.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3456777788899999999999999999999974
No 279
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=20.87 E-value=45 Score=21.72 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=11.0
Q ss_pred ccccCCCCCCeeecc
Q 021106 208 CLRCENCKRGFHAAL 222 (317)
Q Consensus 208 ~l~C~~C~~~F~A~~ 222 (317)
.+.|++|++.+.|..
T Consensus 4 ~~~C~nC~R~v~a~R 18 (33)
T PF08209_consen 4 YVECPNCGRPVAASR 18 (33)
T ss_dssp EEE-TTTSSEEEGGG
T ss_pred eEECCCCcCCcchhh
Confidence 368999999987754
No 280
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.87 E-value=1.9e+02 Score=24.73 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
+.|.+.+..|..++..+|+..+-+.+.||+.+.-
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~ 62 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIIT 62 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5678888889999999999988888888865543
No 281
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=20.80 E-value=48 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.671 Sum_probs=19.8
Q ss_pred cceeccc--CceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACP--YCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~--gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
=|..+|+ .|.+...... +-...|++|++..
T Consensus 16 ~~Y~aC~~~~C~kKv~~~~---~~~y~C~~C~~~~ 47 (146)
T PF08646_consen 16 WYYPACPNEKCNKKVTENG---DGSYRCEKCNKTV 47 (146)
T ss_dssp TEEEE-TSTTTS-B-EEET---TTEEEETTTTEEE
T ss_pred cEECCCCCccCCCEeecCC---CcEEECCCCCCcC
Confidence 4678999 9998766542 2346999999776
No 282
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=20.75 E-value=3.2e+02 Score=26.03 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+...|...|..+++.+|...+..|...+|..
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4456777888888888888888888777753
No 283
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=20.72 E-value=57 Score=27.71 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.5
Q ss_pred ccceecccCceeEEeecceecc-cccccCCCCCCee
Q 021106 185 SSFWTACPYCYILYEYPRVYEN-CCLRCENCKRGFH 219 (317)
Q Consensus 185 ~tFwtaC~gC~~~~ey~r~y~~-~~l~C~~C~~~F~ 219 (317)
.+|.=.|..|...+-..+...+ ...+|..|++.+.
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~ 144 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLI 144 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEE
Confidence 3678889999877765555545 6679999999885
No 284
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=20.63 E-value=3.8e+02 Score=30.29 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=18.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+|.-+...++++.|...+.+|..++|...
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 334445666666666666666666666543
No 285
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.49 E-value=2.8e+02 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+.++.+.|-+++..+||.+|..-+..-...+|.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~ 173 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN 173 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344555566666666666666665655555665
No 286
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=20.20 E-value=3.1e+02 Score=25.56 Aligned_cols=48 Identities=19% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAE 60 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~ 60 (317)
++....-+|..+|...|.+.+.+....+|.....++.-.+.+++.+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 355566788999999999999999999999888776665555555544
No 287
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.13 E-value=2.6e+02 Score=21.44 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETE 40 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~ 40 (317)
+.|...+..|.++-..+++..|..++..|.++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 468888889999999999999999999886553
No 288
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.09 E-value=54 Score=31.94 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=22.3
Q ss_pred cceecccCceeEEeecceecccccccCCCCCC
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
--+-.|..|...+.|.| +.|++|+.+
T Consensus 210 ~RyL~CslC~teW~~~R------~~C~~Cg~~ 235 (309)
T PRK03564 210 LRYLHCNLCESEWHVVR------VKCSNCEQS 235 (309)
T ss_pred ceEEEcCCCCCcccccC------ccCCCCCCC
Confidence 45678999999999988 899999864
Done!