Query 021106
Match_columns 317
No_of_seqs 348 out of 2291
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.9 4.3E-24 1.5E-28 183.8 3.6 129 66-221 9-146 (155)
2 3lz8_A Putative chaperone DNAJ 99.8 1.1E-21 3.9E-26 187.9 3.0 124 66-203 27-167 (329)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 6.4E-20 2.2E-24 139.9 3.6 67 67-134 3-69 (77)
4 2ctp_A DNAJ homolog subfamily 99.8 6.7E-20 2.3E-24 140.1 3.0 69 65-134 5-73 (78)
5 2ctr_A DNAJ homolog subfamily 99.8 1.5E-19 5.2E-24 141.5 4.4 69 65-134 5-73 (88)
6 1wjz_A 1700030A21RIK protein; 99.8 1.1E-19 3.9E-24 143.3 3.5 69 65-134 14-89 (94)
7 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.5E-19 5.2E-24 141.5 3.5 69 65-134 15-83 (88)
8 2dn9_A DNAJ homolog subfamily 99.8 1.8E-19 6E-24 138.0 3.7 69 65-134 5-74 (79)
9 2ej7_A HCG3 gene; HCG3 protein 99.8 4E-19 1.4E-23 137.0 4.6 68 65-133 7-76 (82)
10 2yua_A Williams-beuren syndrom 99.8 2.1E-19 7.3E-24 143.7 3.0 68 66-134 16-84 (99)
11 2o37_A Protein SIS1; HSP40, J- 99.7 3E-19 1E-23 141.0 2.3 67 65-134 6-72 (92)
12 2dmx_A DNAJ homolog subfamily 99.7 8.5E-19 2.9E-23 138.1 4.3 68 66-134 8-77 (92)
13 2ctq_A DNAJ homolog subfamily 99.7 5.2E-19 1.8E-23 144.5 3.1 68 66-134 19-87 (112)
14 2och_A Hypothetical protein DN 99.7 7E-19 2.4E-23 132.9 3.6 66 65-133 6-71 (73)
15 2ys8_A RAB-related GTP-binding 99.7 2.8E-18 9.4E-23 135.1 5.8 64 64-128 24-87 (90)
16 2lgw_A DNAJ homolog subfamily 99.7 1.7E-18 5.9E-23 138.7 3.3 67 67-134 2-70 (99)
17 1bq0_A DNAJ, HSP40; chaperone, 99.7 7.7E-19 2.6E-23 141.3 1.2 67 67-134 3-70 (103)
18 2ctw_A DNAJ homolog subfamily 99.7 2.2E-18 7.7E-23 140.2 3.6 68 65-133 15-83 (109)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 4E-18 1.4E-22 138.4 2.1 70 65-134 13-86 (109)
20 3apq_A DNAJ homolog subfamily 99.6 5.2E-17 1.8E-21 143.7 2.5 67 67-134 2-69 (210)
21 1n4c_A Auxilin; four helix bun 99.6 1.8E-16 6.1E-21 140.0 5.0 63 66-129 116-182 (182)
22 1gh6_A Large T antigen; tumor 99.6 3.4E-17 1.2E-21 134.5 -0.4 63 67-133 8-72 (114)
23 3hho_A CO-chaperone protein HS 99.6 1E-16 3.4E-21 140.7 2.2 69 66-134 3-78 (174)
24 3ag7_A Putative uncharacterize 99.6 1.2E-16 4.2E-21 129.6 2.1 73 45-125 25-105 (106)
25 1iur_A KIAA0730 protein; DNAJ 99.6 1.9E-16 6.4E-21 124.4 3.0 61 67-128 16-78 (88)
26 2qwo_B Putative tyrosine-prote 99.6 6.6E-16 2.2E-20 122.3 4.5 55 67-122 33-91 (92)
27 3bvo_A CO-chaperone protein HS 99.6 5.1E-16 1.7E-20 139.8 2.1 69 66-134 42-117 (207)
28 1faf_A Large T antigen; J doma 99.6 4.5E-16 1.6E-20 119.7 1.5 60 67-130 11-72 (79)
29 1fpo_A HSC20, chaperone protei 99.6 5.4E-16 1.8E-20 135.7 1.8 67 68-134 2-75 (171)
30 2pf4_E Small T antigen; PP2A, 99.5 1.7E-16 5.9E-21 139.2 -2.2 65 67-134 11-76 (174)
31 3uo3_A J-type CO-chaperone JAC 99.5 1.3E-15 4.5E-20 134.5 -0.0 67 65-133 9-81 (181)
32 2guz_A Mitochondrial import in 99.5 4.4E-15 1.5E-19 111.8 2.2 57 67-127 14-71 (71)
33 2y4t_A DNAJ homolog subfamily 99.5 1.4E-13 4.8E-18 129.6 10.8 118 10-132 329-450 (450)
34 3apo_A DNAJ homolog subfamily 99.4 1.9E-14 6.6E-19 149.9 -2.3 69 65-134 19-88 (780)
35 2guz_B Mitochondrial import in 98.5 7.1E-08 2.4E-12 71.4 3.9 50 69-122 6-58 (65)
36 2pzi_A Probable serine/threoni 97.0 0.0013 4.5E-08 67.3 8.6 103 10-119 534-675 (681)
37 2ctt_A DNAJ homolog subfamily 95.2 0.011 3.6E-07 46.8 2.9 65 179-248 3-69 (104)
38 1nlt_A Protein YDJ1, mitochond 94.7 0.02 6.7E-07 52.2 3.8 56 176-236 10-66 (248)
39 3upv_A Heat shock protein STI1 92.5 0.14 4.8E-06 39.0 4.7 37 8-44 2-38 (126)
40 4gcn_A Protein STI-1; structur 90.8 0.36 1.2E-05 37.7 5.3 38 7-44 5-42 (127)
41 2l6j_A TPR repeat-containing p 90.6 0.72 2.5E-05 33.4 6.7 91 9-122 3-93 (111)
42 4gco_A Protein STI-1; structur 90.5 0.48 1.6E-05 37.1 5.9 40 6-45 9-48 (126)
43 3gyz_A Chaperone protein IPGC; 85.6 1.1 3.9E-05 36.6 5.3 41 6-46 32-72 (151)
44 3sz7_A HSC70 cochaperone (SGT) 85.5 2.1 7.2E-05 34.0 6.8 39 6-44 7-45 (164)
45 2hr2_A Hypothetical protein; a 85.4 3.8 0.00013 34.6 8.6 37 7-43 8-44 (159)
46 3vtx_A MAMA; tetratricopeptide 84.1 2 6.9E-05 34.4 6.1 37 9-45 4-40 (184)
47 3rkv_A Putative peptidylprolyl 83.6 1.7 5.7E-05 34.5 5.4 35 9-43 62-96 (162)
48 2xcb_A PCRH, regulatory protei 83.2 2.3 7.8E-05 33.1 5.9 40 6-45 14-53 (142)
49 2js4_A UPF0434 protein BB2007; 83.2 0.34 1.2E-05 35.8 0.9 27 190-218 10-36 (70)
50 2hf1_A Tetraacyldisaccharide-1 82.6 0.31 1E-05 35.9 0.5 27 190-218 10-36 (68)
51 2vyi_A SGTA protein; chaperone 81.5 5.2 0.00018 28.9 7.1 38 6-43 8-45 (131)
52 2jr6_A UPF0434 protein NMA0874 81.1 0.42 1.4E-05 35.1 0.8 27 190-218 10-36 (68)
53 2pk7_A Uncharacterized protein 80.9 0.36 1.2E-05 35.6 0.3 27 190-218 10-36 (69)
54 2jny_A Uncharacterized BCR; st 80.4 0.45 1.5E-05 34.9 0.7 27 190-218 12-38 (67)
55 1na3_A Designed protein CTPR2; 80.0 4.4 0.00015 28.0 6.0 36 8-43 7-42 (91)
56 2kat_A Uncharacterized protein 79.6 1.5 5E-05 32.7 3.5 36 9-44 18-53 (115)
57 2vgx_A Chaperone SYCD; alterna 79.3 7.4 0.00025 30.8 7.9 40 6-45 17-56 (148)
58 4ga2_A E3 SUMO-protein ligase 77.9 2.8 9.7E-05 33.3 4.9 41 6-46 27-67 (150)
59 2vgx_A Chaperone SYCD; alterna 77.0 2.9 9.8E-05 33.3 4.7 36 10-45 55-90 (148)
60 2kc7_A BFR218_protein; tetratr 76.4 6 0.00021 28.1 5.9 31 13-43 3-33 (99)
61 3bee_A Putative YFRE protein; 76.2 6.1 0.00021 29.6 6.1 43 8-50 4-49 (93)
62 3ma5_A Tetratricopeptide repea 76.2 6 0.0002 29.0 6.0 38 8-45 5-42 (100)
63 4gco_A Protein STI-1; structur 75.2 5.3 0.00018 30.8 5.7 79 9-92 46-124 (126)
64 1elw_A TPR1-domain of HOP; HOP 75.1 6.9 0.00023 27.7 6.0 35 9-43 3-37 (118)
65 2xcb_A PCRH, regulatory protei 75.1 3.2 0.00011 32.2 4.4 36 10-45 52-87 (142)
66 1na3_A Designed protein CTPR2; 74.6 9.2 0.00031 26.2 6.4 35 11-45 44-78 (91)
67 3agx_A DNAJ homolog subfamily 73.9 0.92 3.2E-05 39.0 0.9 34 178-218 3-37 (181)
68 3qky_A Outer membrane assembly 73.8 22 0.00076 30.0 9.9 36 11-46 149-184 (261)
69 3rkv_A Putative peptidylprolyl 73.8 7.1 0.00024 30.7 6.2 48 10-57 97-145 (162)
70 2l6j_A TPR repeat-containing p 73.0 17 0.00059 25.7 7.8 36 10-45 38-73 (111)
71 1elr_A TPR2A-domain of HOP; HO 69.9 27 0.00093 24.9 10.6 37 8-44 2-38 (131)
72 2kpi_A Uncharacterized protein 69.6 1.7 5.9E-05 30.5 1.4 25 190-218 12-38 (56)
73 3sz7_A HSC70 cochaperone (SGT) 69.6 17 0.00058 28.4 7.6 37 9-45 44-80 (164)
74 3q49_B STIP1 homology and U bo 68.6 12 0.00041 27.8 6.2 37 8-44 7-43 (137)
75 2xev_A YBGF; tetratricopeptide 67.9 13 0.00044 27.3 6.2 37 10-46 39-75 (129)
76 2dba_A Smooth muscle cell asso 67.9 13 0.00045 27.6 6.4 37 7-43 25-61 (148)
77 3k9i_A BH0479 protein; putativ 67.7 16 0.00054 27.0 6.8 38 7-44 24-61 (117)
78 2kck_A TPR repeat; tetratricop 67.6 2.6 8.9E-05 29.9 2.1 34 10-43 6-39 (112)
79 1a17_A Serine/threonine protei 67.5 14 0.00047 28.2 6.5 38 7-44 10-47 (166)
80 2kat_A Uncharacterized protein 67.3 8.3 0.00028 28.3 5.0 37 10-46 53-89 (115)
81 2e2e_A Formate-dependent nitri 67.0 17 0.00057 28.7 7.1 36 10-45 78-116 (177)
82 1hxi_A PEX5, peroxisome target 66.9 14 0.00048 28.0 6.4 36 11-46 18-53 (121)
83 1hxi_A PEX5, peroxisome target 66.2 9.1 0.00031 29.1 5.2 36 10-45 51-86 (121)
84 2xev_A YBGF; tetratricopeptide 65.9 16 0.00054 26.8 6.4 33 12-44 4-36 (129)
85 2dba_A Smooth muscle cell asso 65.8 12 0.00042 27.9 5.8 80 9-93 64-143 (148)
86 2v5f_A Prolyl 4-hydroxylase su 65.2 22 0.00075 26.4 7.1 44 14-57 50-93 (104)
87 3ax2_A Mitochondrial import re 64.8 14 0.00047 27.3 5.5 39 13-54 20-58 (73)
88 2lni_A Stress-induced-phosphop 64.1 17 0.00059 26.3 6.2 36 10-45 50-85 (133)
89 2kc7_A BFR218_protein; tetratr 63.9 22 0.00074 25.0 6.6 35 12-46 37-71 (99)
90 2ifu_A Gamma-SNAP; membrane fu 62.8 59 0.002 28.5 10.6 18 81-98 111-128 (307)
91 1elw_A TPR1-domain of HOP; HOP 62.6 18 0.00061 25.4 5.9 35 10-44 38-72 (118)
92 1wao_1 Serine/threonine protei 61.8 1.1E+02 0.0038 29.1 14.2 46 11-56 75-120 (477)
93 2fbn_A 70 kDa peptidylprolyl i 61.6 19 0.00066 29.1 6.7 35 10-44 88-122 (198)
94 3gyz_A Chaperone protein IPGC; 61.3 16 0.00055 29.4 6.0 36 10-45 70-105 (151)
95 4a1s_A PINS, partner of inscut 61.3 46 0.0016 29.6 9.7 37 7-43 45-81 (411)
96 4gyw_A UDP-N-acetylglucosamine 61.0 13 0.00045 38.3 6.6 37 8-44 7-43 (723)
97 2r5s_A Uncharacterized protein 60.0 2.6 8.8E-05 34.0 0.9 41 6-46 2-42 (176)
98 2vyi_A SGTA protein; chaperone 59.9 24 0.00083 25.1 6.4 35 10-44 46-80 (131)
99 1na0_A Designed protein CTPR3; 59.7 26 0.00088 24.7 6.4 35 10-44 43-77 (125)
100 2fbn_A 70 kDa peptidylprolyl i 59.5 20 0.00067 29.1 6.3 37 8-44 36-72 (198)
101 2kck_A TPR repeat; tetratricop 59.1 20 0.00069 24.9 5.6 32 11-42 41-72 (112)
102 3uq3_A Heat shock protein STI1 59.1 70 0.0024 25.8 12.2 34 7-40 2-35 (258)
103 1a17_A Serine/threonine protei 58.6 30 0.001 26.1 7.0 35 10-44 47-81 (166)
104 3upv_A Heat shock protein STI1 58.3 12 0.00041 27.8 4.4 39 9-47 37-75 (126)
105 2lni_A Stress-induced-phosphop 58.3 15 0.0005 26.7 4.9 36 8-43 14-49 (133)
106 1pc2_A Mitochondria fission pr 58.3 27 0.00092 29.2 7.0 48 10-57 71-118 (152)
107 3ro3_A PINS homolog, G-protein 58.2 17 0.00058 26.9 5.3 37 7-43 6-42 (164)
108 3uq3_A Heat shock protein STI1 58.2 8.3 0.00028 31.7 3.8 38 7-44 136-173 (258)
109 2if4_A ATFKBP42; FKBP-like, al 57.2 6.8 0.00023 35.8 3.3 33 12-44 232-264 (338)
110 3qou_A Protein YBBN; thioredox 57.0 19 0.00066 31.6 6.2 39 9-47 116-154 (287)
111 2hr2_A Hypothetical protein; a 56.8 13 0.00045 31.2 4.8 40 8-47 96-139 (159)
112 1elr_A TPR2A-domain of HOP; HO 56.8 21 0.00072 25.6 5.5 33 10-42 79-111 (131)
113 1om2_A Protein (mitochondrial 56.5 17 0.00057 28.3 4.9 37 13-52 23-59 (95)
114 2yhc_A BAMD, UPF0169 lipoprote 56.1 84 0.0029 25.9 11.7 29 16-44 47-75 (225)
115 3ma5_A Tetratricopeptide repea 56.0 13 0.00046 26.9 4.3 36 12-47 43-78 (100)
116 4gyw_A UDP-N-acetylglucosamine 55.7 20 0.00068 37.0 6.9 35 11-45 44-78 (723)
117 4a5x_A MITD1, MIT domain-conta 55.6 17 0.00057 27.4 4.7 37 1-39 9-45 (86)
118 1o3u_A Conserved hypothetical 55.4 55 0.0019 26.1 8.3 32 8-39 14-45 (135)
119 3bee_A Putative YFRE protein; 55.1 27 0.00094 25.8 6.0 33 14-46 47-79 (93)
120 1p5q_A FKBP52, FK506-binding p 54.5 25 0.00085 31.8 6.7 37 8-44 145-181 (336)
121 3q49_B STIP1 homology and U bo 54.4 31 0.001 25.4 6.2 34 10-43 43-76 (137)
122 2r5s_A Uncharacterized protein 54.4 39 0.0013 26.7 7.2 28 15-42 113-140 (176)
123 3u4t_A TPR repeat-containing p 54.1 44 0.0015 27.6 7.9 36 11-46 4-39 (272)
124 3mkr_A Coatomer subunit epsilo 54.1 64 0.0022 28.3 9.3 15 87-101 255-269 (291)
125 3ro3_A PINS homolog, G-protein 53.7 26 0.00089 25.9 5.7 40 9-48 48-87 (164)
126 1na0_A Designed protein CTPR3; 53.4 31 0.001 24.3 5.9 35 9-43 8-42 (125)
127 1qqe_A Vesicular transport pro 53.2 95 0.0033 26.8 10.2 39 9-47 76-114 (292)
128 1ihg_A Cyclophilin 40; ppiase 53.1 31 0.001 32.0 7.2 37 8-44 271-307 (370)
129 3ieg_A DNAJ homolog subfamily 52.7 31 0.001 29.6 6.7 34 11-44 273-306 (359)
130 1ihg_A Cyclophilin 40; ppiase 52.7 21 0.00073 33.1 6.0 17 6-22 238-254 (370)
131 3ieg_A DNAJ homolog subfamily 52.4 30 0.001 29.7 6.6 35 9-43 2-36 (359)
132 1kt0_A FKBP51, 51 kDa FK506-bi 52.4 22 0.00075 33.8 6.2 37 8-44 266-302 (457)
133 3k9i_A BH0479 protein; putativ 50.1 23 0.00078 26.1 4.8 35 12-46 63-97 (117)
134 2k5r_A Uncharacterized protein 49.6 3.9 0.00013 32.1 0.3 29 190-218 10-63 (97)
135 2bx9_A Anti-trap, AT, tryptoph 48.7 5.1 0.00017 27.8 0.7 38 209-248 10-47 (53)
136 1p5q_A FKBP52, FK506-binding p 48.7 32 0.0011 31.0 6.5 35 10-44 196-230 (336)
137 1kt0_A FKBP51, 51 kDa FK506-bi 48.3 33 0.0011 32.5 6.7 35 10-44 317-351 (457)
138 4ga2_A E3 SUMO-protein ligase 48.2 33 0.0011 26.8 5.7 35 10-44 65-99 (150)
139 3u4t_A TPR repeat-containing p 48.1 24 0.00084 29.3 5.2 42 11-52 222-263 (272)
140 3o10_A Sacsin; all-helical dom 46.9 31 0.0011 28.1 5.4 34 5-38 4-44 (141)
141 1exk_A DNAJ protein; extended 46.8 5.9 0.0002 28.8 0.9 36 209-244 12-48 (79)
142 2gw1_A Mitochondrial precursor 46.4 11 0.00039 34.6 3.0 28 16-43 378-405 (514)
143 1ufb_A TT1696 protein; structu 46.2 1E+02 0.0034 23.8 8.7 82 8-102 9-92 (127)
144 1nzn_A CGI-135 protein, fissio 46.2 48 0.0017 26.8 6.4 44 12-55 76-119 (126)
145 2gw1_A Mitochondrial precursor 45.8 35 0.0012 31.2 6.3 36 7-42 3-38 (514)
146 2c2l_A CHIP, carboxy terminus 45.7 32 0.0011 30.1 5.7 35 10-44 4-38 (281)
147 3urz_A Uncharacterized protein 45.2 58 0.002 26.7 7.1 29 16-44 60-88 (208)
148 2fo7_A Synthetic consensus TPR 44.8 42 0.0014 23.7 5.5 33 11-43 2-34 (136)
149 3ukw_C Bimax1 peptide; arm rep 44.5 7.5 0.00026 22.9 0.9 10 308-317 3-12 (28)
150 4gcn_A Protein STI-1; structur 44.4 33 0.0011 26.0 5.0 32 11-42 84-115 (127)
151 3o48_A Mitochondria fission 1 43.7 64 0.0022 26.5 6.8 47 12-58 80-126 (134)
152 2yhc_A BAMD, UPF0169 lipoprote 43.6 42 0.0014 27.8 6.0 36 10-45 4-39 (225)
153 3ro2_A PINS homolog, G-protein 43.5 32 0.0011 28.9 5.3 35 9-43 4-38 (338)
154 3lcz_A YCZA, inhibitor of trap 43.3 5.9 0.0002 27.4 0.4 37 209-247 10-46 (53)
155 3qou_A Protein YBBN; thioredox 43.2 59 0.002 28.3 7.2 31 13-43 222-252 (287)
156 1pft_A TFIIB, PFTFIIBN; N-term 42.9 15 0.00051 24.5 2.4 29 190-220 7-36 (50)
157 3gw4_A Uncharacterized protein 42.6 76 0.0026 24.8 7.2 31 9-39 65-95 (203)
158 2l3k_A Rhombotin-2, linker, LI 42.5 20 0.00069 28.1 3.5 54 187-245 5-68 (123)
159 4a1s_A PINS, partner of inscut 42.5 22 0.00075 31.8 4.2 35 8-42 221-255 (411)
160 3a43_A HYPD, hydrogenase nicke 42.2 22 0.00076 29.1 3.8 11 190-200 72-82 (139)
161 2cfu_A SDSA1; SDS-hydrolase, l 42.1 20 0.00067 36.6 4.2 49 10-58 449-497 (658)
162 2pl2_A Hypothetical conserved 42.0 54 0.0018 27.1 6.4 30 14-43 43-72 (217)
163 1zu2_A Mitochondrial import re 41.9 30 0.001 29.0 4.6 31 24-54 105-135 (158)
164 3sf4_A G-protein-signaling mod 41.7 67 0.0023 28.1 7.3 36 10-45 187-222 (406)
165 1hh8_A P67PHOX, NCF-2, neutrop 41.6 25 0.00086 28.2 4.1 37 10-46 37-73 (213)
166 2pl2_A Hypothetical conserved 41.6 40 0.0014 27.9 5.5 31 10-40 118-148 (217)
167 3vtx_A MAMA; tetratricopeptide 41.5 47 0.0016 25.9 5.7 34 11-44 74-107 (184)
168 3urz_A Uncharacterized protein 41.5 57 0.0019 26.7 6.4 37 10-46 88-124 (208)
169 2vq2_A PILW, putative fimbrial 41.2 41 0.0014 26.6 5.3 27 16-42 119-145 (225)
170 1orj_A Flagellar protein FLIS; 41.2 33 0.0011 27.9 4.6 32 8-39 27-62 (130)
171 2vq2_A PILW, putative fimbrial 41.1 45 0.0016 26.3 5.6 38 7-44 5-42 (225)
172 2v5f_A Prolyl 4-hydroxylase su 40.7 37 0.0013 25.1 4.7 32 10-41 5-36 (104)
173 2pzi_A Probable serine/threoni 40.6 1.4E+02 0.0047 29.8 10.3 36 10-45 433-468 (681)
174 3fp2_A TPR repeat-containing p 40.4 15 0.00052 34.1 2.9 37 8-44 23-59 (537)
175 3qky_A Outer membrane assembly 39.8 53 0.0018 27.6 6.1 35 9-43 14-48 (261)
176 2v6x_A Vacuolar protein sortin 39.7 53 0.0018 24.2 5.3 39 1-39 4-42 (85)
177 4b4t_Q 26S proteasome regulato 39.1 1.3E+02 0.0044 26.9 9.0 115 10-124 135-253 (434)
178 1y8m_A FIS1; mitochondria, unk 38.9 66 0.0022 26.7 6.2 46 12-57 79-124 (144)
179 2puy_A PHD finger protein 21A; 38.7 17 0.0006 25.1 2.3 44 189-241 6-49 (60)
180 3iqc_A FLIS, flagellar protein 38.6 43 0.0015 27.1 5.0 33 8-40 34-66 (131)
181 2e2e_A Formate-dependent nitri 38.4 43 0.0015 26.1 5.0 35 10-44 44-78 (177)
182 3hym_B Cell division cycle pro 38.3 1.2E+02 0.004 25.5 8.2 36 11-46 23-58 (330)
183 2ff4_A Probable regulatory pro 38.1 97 0.0033 29.0 8.2 70 15-94 176-256 (388)
184 4i17_A Hypothetical protein; T 37.2 77 0.0026 25.7 6.6 27 16-42 48-74 (228)
185 2ct7_A Ring finger protein 31; 37.1 14 0.00048 27.5 1.7 27 191-219 28-54 (86)
186 1qqe_A Vesicular transport pro 37.0 86 0.0029 27.1 7.2 38 7-44 33-71 (292)
187 2kdx_A HYPA, hydrogenase/ureas 36.8 36 0.0012 26.8 4.2 25 189-217 74-99 (119)
188 3sf4_A G-protein-signaling mod 36.6 82 0.0028 27.5 7.0 37 9-45 226-262 (406)
189 3cv0_A Peroxisome targeting si 35.8 1E+02 0.0035 25.9 7.3 34 11-44 173-206 (327)
190 3fp2_A TPR repeat-containing p 35.7 44 0.0015 30.9 5.2 33 12-44 346-378 (537)
191 1fch_A Peroxisomal targeting s 35.6 40 0.0014 29.4 4.7 35 10-44 217-251 (368)
192 1mm2_A MI2-beta; PHD, zinc fin 35.4 25 0.00086 24.5 2.7 44 189-241 10-53 (61)
193 1vh6_A Flagellar protein FLIS; 35.2 51 0.0017 27.2 5.0 32 8-39 31-62 (145)
194 2ho1_A Type 4 fimbrial biogene 34.4 68 0.0023 26.2 5.8 35 10-44 37-71 (252)
195 2iyb_E Testin, TESS, TES; LIM 34.3 20 0.00069 24.7 2.0 32 187-218 1-42 (65)
196 3ulq_A Response regulator aspa 34.3 1.2E+02 0.0042 26.8 8.0 38 8-45 141-178 (383)
197 2cpt_A SKD1 protein, vacuolar 34.0 39 0.0013 26.9 3.9 33 7-39 15-47 (117)
198 2yql_A PHD finger protein 21A; 34.0 21 0.00073 24.3 2.1 42 189-239 10-51 (56)
199 1xnf_A Lipoprotein NLPI; TPR, 33.9 76 0.0026 26.0 6.1 37 8-44 41-77 (275)
200 2pk2_A Cyclin-T1, protein TAT; 33.7 8.7 0.0003 36.4 0.0 34 27-60 60-93 (358)
201 3na7_A HP0958; flagellar bioge 33.5 8.9 0.00031 34.4 0.0 32 189-220 199-234 (256)
202 2vsy_A XCC0866; transferase, g 33.1 72 0.0025 30.6 6.5 35 10-44 23-57 (568)
203 1x4l_A Skeletal muscle LIM-pro 33.0 20 0.00068 25.1 1.8 34 186-219 3-46 (72)
204 3flo_B DNA polymerase alpha ca 32.2 22 0.00074 31.3 2.3 34 185-218 19-59 (206)
205 2ifu_A Gamma-SNAP; membrane fu 31.8 1.1E+02 0.0038 26.6 7.1 39 7-45 152-190 (307)
206 2qfc_A PLCR protein; TPR, HTH, 31.8 2.1E+02 0.007 24.4 8.8 37 8-44 73-109 (293)
207 3as5_A MAMA; tetratricopeptide 31.7 39 0.0013 25.6 3.6 35 8-42 6-40 (186)
208 2fo7_A Synthetic consensus TPR 31.5 95 0.0032 21.7 5.6 32 12-43 37-68 (136)
209 2dar_A PDZ and LIM domain prot 31.4 79 0.0027 23.0 5.1 53 185-243 22-80 (90)
210 2yhe_A SEC-alkyl sulfatase; hy 37.5 10 0.00035 39.1 0.0 61 10-70 461-521 (668)
211 4abn_A Tetratricopeptide repea 30.9 85 0.0029 29.7 6.6 33 10-42 137-169 (474)
212 1hh8_A P67PHOX, NCF-2, neutrop 30.8 2E+02 0.0067 22.6 11.1 30 8-37 4-33 (213)
213 4i17_A Hypothetical protein; T 30.4 1E+02 0.0035 25.0 6.2 32 10-41 7-38 (228)
214 4fx5_A VON willebrand factor t 30.3 47 0.0016 32.3 4.6 36 7-42 379-414 (464)
215 4abn_A Tetratricopeptide repea 30.0 86 0.003 29.6 6.4 36 9-44 257-292 (474)
216 2f9y_B Acetyl-coenzyme A carbo 30.0 16 0.00056 33.8 1.2 32 186-218 22-53 (304)
217 4b4t_Q 26S proteasome regulato 29.7 1.2E+02 0.0042 27.1 7.1 33 12-44 6-38 (434)
218 2v6y_A AAA family ATPase, P60 29.7 44 0.0015 24.7 3.4 33 7-39 8-40 (83)
219 1xwh_A Autoimmune regulator; P 29.6 29 0.001 24.5 2.3 34 207-241 19-52 (66)
220 2y4t_A DNAJ homolog subfamily 29.4 87 0.003 28.1 6.1 36 8-43 24-59 (450)
221 1wii_A Hypothetical UPF0222 pr 29.3 20 0.0007 27.2 1.4 35 190-225 25-63 (85)
222 1xnf_A Lipoprotein NLPI; TPR, 29.2 1E+02 0.0035 25.2 6.0 34 11-44 78-111 (275)
223 2d8z_A Four and A half LIM dom 28.9 27 0.00092 24.1 2.0 33 186-218 3-41 (70)
224 2k16_A Transcription initiatio 28.8 20 0.00067 25.9 1.2 47 189-241 19-65 (75)
225 2vsy_A XCC0866; transferase, g 28.7 2.3E+02 0.0077 27.0 9.2 28 15-42 96-123 (568)
226 2q2g_A HSP40 protein, heat sho 28.7 13 0.00044 31.6 0.2 27 177-203 3-30 (180)
227 1x4k_A Skeletal muscle LIM-pro 28.5 23 0.00078 24.6 1.5 34 186-219 3-44 (72)
228 3as5_A MAMA; tetratricopeptide 28.0 1.4E+02 0.0047 22.4 6.2 35 10-44 76-110 (186)
229 2q7f_A YRRB protein; TPR, prot 27.8 55 0.0019 26.4 4.0 35 10-44 159-193 (243)
230 4h7y_A Dual specificity protei 27.6 1.1E+02 0.0039 25.8 5.9 31 11-41 95-125 (161)
231 2cu8_A Cysteine-rich protein 2 27.4 25 0.00087 24.8 1.6 34 186-219 7-47 (76)
232 2fiy_A Protein FDHE homolog; F 27.0 25 0.00087 32.7 1.9 55 188-248 208-268 (309)
233 1wol_A ST0689, 122AA long cons 26.9 91 0.0031 24.0 5.0 32 8-39 9-40 (122)
234 2rkl_A Vacuolar protein sortin 26.7 1.2E+02 0.0041 21.0 4.8 32 8-39 18-49 (53)
235 4fm3_A Uncharacterized hypothe 26.3 90 0.0031 24.3 4.7 29 8-36 32-60 (98)
236 2ct0_A Non-SMC element 1 homol 26.2 27 0.00092 25.6 1.6 30 190-219 30-63 (74)
237 1f62_A Transcription factor WS 25.9 26 0.00089 23.2 1.3 34 206-240 13-46 (51)
238 3q15_A PSP28, response regulat 25.7 1.7E+02 0.0058 26.0 7.3 38 8-45 139-176 (378)
239 2q7f_A YRRB protein; TPR, prot 25.1 1.4E+02 0.0047 23.8 6.1 33 10-42 57-89 (243)
240 2w2u_A Hypothetical P60 katani 24.8 1.3E+02 0.0043 22.3 5.2 33 7-39 16-48 (83)
241 2e6r_A Jumonji/ARID domain-con 24.7 27 0.00092 26.5 1.4 48 190-243 18-65 (92)
242 2ond_A Cleavage stimulation fa 24.5 1.3E+02 0.0045 26.0 6.2 30 10-39 203-232 (308)
243 1w3b_A UDP-N-acetylglucosamine 24.4 54 0.0018 29.1 3.6 23 20-42 43-65 (388)
244 4eqf_A PEX5-related protein; a 24.3 1.1E+02 0.0037 26.7 5.6 30 13-42 68-97 (365)
245 3cv0_A Peroxisome targeting si 24.3 1.2E+02 0.0041 25.4 5.7 31 12-42 23-53 (327)
246 1x68_A FHL5 protein; four-and- 24.2 28 0.00096 24.6 1.3 34 186-219 3-46 (76)
247 1nyp_A Pinch protein; LIM doma 24.1 32 0.0011 23.4 1.6 34 186-219 3-42 (66)
248 3nm9_A HMG-D, high mobility gr 24.1 1E+02 0.0036 21.5 4.5 39 86-131 15-53 (73)
249 2yt5_A Metal-response element- 24.1 32 0.0011 23.9 1.6 50 189-241 7-58 (66)
250 2ehe_A Four and A half LIM dom 23.8 30 0.001 24.8 1.4 34 186-219 13-54 (82)
251 3ro2_A PINS homolog, G-protein 23.7 1.7E+02 0.0057 24.2 6.5 40 7-46 220-259 (338)
252 2ect_A Ring finger protein 126 23.7 43 0.0015 23.5 2.3 24 205-228 49-72 (78)
253 1we9_A PHD finger family prote 23.7 34 0.0012 23.7 1.7 48 189-240 7-54 (64)
254 3gw4_A Uncharacterized protein 23.5 2.5E+02 0.0085 21.6 7.2 37 9-45 25-61 (203)
255 1wfd_A Hypothetical protein 15 23.5 1.2E+02 0.0042 22.7 5.0 33 7-39 12-44 (93)
256 2l5u_A Chromodomain-helicase-D 23.1 33 0.0011 23.9 1.5 43 189-240 12-54 (61)
257 2c2l_A CHIP, carboxy terminus 23.0 1.2E+02 0.0042 26.1 5.7 35 10-44 38-72 (281)
258 2d8x_A Protein pinch; LIM doma 22.9 36 0.0012 23.5 1.7 34 186-219 3-42 (70)
259 3mkr_A Coatomer subunit epsilo 22.9 1.2E+02 0.0042 26.4 5.7 30 13-42 133-162 (291)
260 2ho1_A Type 4 fimbrial biogene 22.8 1.4E+02 0.0048 24.2 5.7 34 10-43 71-104 (252)
261 4f3v_A ESX-1 secretion system 22.8 99 0.0034 28.1 5.1 29 14-42 212-240 (282)
262 2lcq_A Putative toxin VAPC6; P 22.2 39 0.0013 27.9 2.0 29 186-218 130-158 (165)
263 2f9i_B Acetyl-coenzyme A carbo 22.2 30 0.001 31.7 1.5 32 186-218 28-59 (285)
264 1vq8_Z 50S ribosomal protein L 21.9 44 0.0015 25.1 2.0 30 189-220 28-57 (83)
265 2if4_A ATFKBP42; FKBP-like, al 21.8 50 0.0017 29.8 2.9 37 7-43 176-212 (338)
266 2egq_A FHL1 protein; LIM domai 21.8 35 0.0012 24.0 1.5 34 186-219 13-57 (77)
267 4a3n_A Transcription factor SO 21.7 43 0.0015 23.2 1.9 41 85-129 13-53 (71)
268 1ckt_A High mobility group 1 p 21.6 96 0.0033 21.4 3.8 40 88-129 15-54 (71)
269 3mv2_A Coatomer subunit alpha; 21.4 1.6E+02 0.0054 27.7 6.2 39 20-61 217-255 (325)
270 1wao_1 Serine/threonine protei 21.4 1.5E+02 0.0051 28.2 6.3 35 10-44 40-74 (477)
271 3ulq_A Response regulator aspa 21.3 91 0.0031 27.8 4.5 32 8-39 222-253 (383)
272 4eqf_A PEX5-related protein; a 21.3 1.8E+02 0.0061 25.2 6.4 35 10-44 213-247 (365)
273 1twf_L ABC10-alpha, DNA-direct 21.2 42 0.0015 24.4 1.8 29 186-217 26-54 (70)
274 1wig_A KIAA1808 protein; LIM d 21.0 36 0.0012 24.0 1.4 33 186-218 3-41 (73)
275 2riq_A Poly [ADP-ribose] polym 21.0 51 0.0017 27.9 2.5 32 208-252 78-109 (160)
276 1x63_A Skeletal muscle LIM-pro 20.9 42 0.0014 23.9 1.7 54 186-245 13-74 (82)
277 2cur_A Skeletal muscle LIM-pro 20.7 41 0.0014 23.1 1.6 34 186-219 3-42 (69)
278 2hsb_A Hypothetical UPF0332 pr 20.7 1.4E+02 0.0048 22.8 5.0 29 8-36 10-38 (126)
279 1wyh_A SLIM 2, skeletal muscle 20.7 36 0.0012 23.5 1.3 33 186-218 3-43 (72)
280 1fch_A Peroxisomal targeting s 20.7 1.2E+02 0.0041 26.1 5.1 30 13-42 67-96 (368)
281 3hym_B Cell division cycle pro 20.5 1.7E+02 0.0058 24.5 5.9 34 11-44 237-270 (330)
282 2gmg_A Hypothetical protein PF 20.4 54 0.0019 25.9 2.4 30 186-218 65-94 (105)
283 3q15_A PSP28, response regulat 20.4 2.2E+02 0.0074 25.2 6.9 29 10-38 222-250 (378)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=4.3e-24 Score=183.77 Aligned_cols=129 Identities=24% Similarity=0.406 Sum_probs=97.3
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc-------hHHHHHHHHHHHHHHhcCCCCcchhccccCcccc
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP-------FADQAFTLVVDAWGVLSDTRKKTPYDHELSLFTK 138 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~-------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 138 (317)
..|||+||||++++ +.++||++||+|++++|||++... .|.+.|++|++||++|+||.+|+.||..+.....
T Consensus 9 ~~~~y~iLgv~~~a-~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~ 87 (155)
T 2l6l_A 9 KKDWYSILGADPSA-NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDL 87 (155)
T ss_dssp CSHHHHHHTCCTTC-CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHH
T ss_pred CCChhHhcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhc
Confidence 46999999999998 789999999999999999999754 3678999999999999999999999987743110
Q ss_pred CCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccceecccCceeEEeecceecc--cccccCCCCC
Q 021106 139 IDLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLSSFWTACPYCYILYEYPRVYEN--CCLRCENCKR 216 (317)
Q Consensus 139 ~~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~tFwtaC~gC~~~~ey~r~y~~--~~l~C~~C~~ 216 (317)
.........+. . ...+......+||+.|+ |...|+|.+..++ ..+.|++|..
T Consensus 88 ~~~~~~~~~~~-----------------------~--~~m~~~e~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl 141 (155)
T 2l6l_A 88 RNVGPVDAQVY-----------------------L--EEMSWNEGDHSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSL 141 (155)
T ss_dssp HTTCSSSEEEE-----------------------T--TTSEEETTTTEEEEECS-SSCEEEEETTHHHHCCEEECSSSSC
T ss_pred cccccccceee-----------------------H--HHhccccCCcEEEEcCC-CCCeEEecHHHhCCCCEEECCCCce
Confidence 00000000000 0 00001112348999998 9999999999887 8899999999
Q ss_pred Ceeec
Q 021106 217 GFHAA 221 (317)
Q Consensus 217 ~F~A~ 221 (317)
.|..+
T Consensus 142 ~~~v~ 146 (155)
T 2l6l_A 142 IIELL 146 (155)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99664
No 2
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.82 E-value=1.1e-21 Score=187.88 Aligned_cols=124 Identities=26% Similarity=0.373 Sum_probs=25.5
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccCc-----cc---
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELSL-----FT--- 137 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~~-----~~--- 137 (317)
..|||+||||+++| +.++||++||+|+++||||+|+.+.|+++|++|++||++|+|+.+|+.||+.+.. +.
T Consensus 27 ~~d~Y~vLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~ 105 (329)
T 3lz8_A 27 LKDYYAILGVQPTD-DLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQR 105 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccccc
Confidence 36999999999998 6799999999999999999998888999999999999999999999999986321 10
Q ss_pred --------cCCCCcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc-cceecccCceeEEeecce
Q 021106 138 --------KIDLTTHSDSMHQSNKLPVRRSQRPSSNTKRPSNARGVDGEDQRARLS-SFWTACPYCYILYEYPRV 203 (317)
Q Consensus 138 --------~~~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~~~~~~~~g~d~~~~~~-tFwtaC~gC~~~~ey~r~ 203 (317)
..++.++++.+|++++. .++.. ...++.|+.+.+. ||.+++.+|.+.+.+.+.
T Consensus 106 ~~~~~~f~~~~f~diF~~~Fg~~g~----~~~~~---------~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~ 167 (329)
T 3lz8_A 106 QTHEQSYSQQDFDDIFSSMFGQQAH----QRRRQ---------HAARGHDLEIEVAVFLEETLAEQTRTISYNLP 167 (329)
T ss_dssp --------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEE
T ss_pred ccccCCcCCCchhhhhHhhhcCcCC----CCCCC---------CcCCCCCEEEEEecchhhhhhccceEEEEEEE
Confidence 11233445555543211 00000 1235778888888 999999999999999874
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=6.4e-20 Score=139.93 Aligned_cols=67 Identities=40% Similarity=0.660 Sum_probs=63.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++++ +.++||++||+|++++|||++..+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 3 ~~~y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 3 KDYYQTLGLARGA-SDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCSHHHHTCCTTC-CHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 6999999999997 789999999999999999999988999999999999999999999999998763
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-20 Score=140.15 Aligned_cols=69 Identities=42% Similarity=0.660 Sum_probs=64.8
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||++..+.+.+.|+.|++||++|+|+.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGA-SDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTC-CHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 456999999999997 789999999999999999999988999999999999999999999999998773
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=141.50 Aligned_cols=69 Identities=35% Similarity=0.593 Sum_probs=64.7
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++.+ +.++||++||+|++++|||++..+.+++.|++|++||++|+|+.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 5 SSGSYYDILGVPKSA-SERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCSHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 346999999999987 789999999999999999999988899999999999999999999999998774
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.77 E-value=1.1e-19 Score=143.34 Aligned_cols=69 Identities=38% Similarity=0.622 Sum_probs=63.6
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-------chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-------PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-------~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||+++. ..+++.|+.|++||++|+|+.+|..||..+.
T Consensus 14 ~~~~~y~iLgv~~~a-s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSA-NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTC-CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 346999999999998 78999999999999999999863 5688999999999999999999999999985
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.5e-19 Score=141.51 Aligned_cols=69 Identities=43% Similarity=0.592 Sum_probs=64.7
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||++..+.+++.|++|++||++|+|+.+|..||..+.
T Consensus 15 ~~~d~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTA-SQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 356999999999987 789999999999999999999988999999999999999999999999998763
No 8
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=138.01 Aligned_cols=69 Identities=42% Similarity=0.604 Sum_probs=63.7
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||++. .+.+++.|+.|++||++|+|+.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNA-SQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 356999999999987 7899999999999999999997 47889999999999999999999999998763
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4e-19 Score=136.95 Aligned_cols=68 Identities=43% Similarity=0.659 Sum_probs=62.6
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP--FADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~--~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
...|||+||||++++ +.++||++||+|++++|||+++.. .+++.|+.|++||++|+|+.+|..||..+
T Consensus 7 ~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQA-SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSCCHHHHTTCCTTC-CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCcCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 346999999999997 789999999999999999999763 68889999999999999999999999876
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-19 Score=143.68 Aligned_cols=68 Identities=29% Similarity=0.471 Sum_probs=63.4
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||++++ +.++||++||+|++++|||++. .+.+.+.|++|++||++|+|+.+|..||..+.
T Consensus 16 ~~~~Y~vLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 16 RTALYDLLGVPSTA-TQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSHHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred ccCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 46999999999998 7899999999999999999996 57889999999999999999999999999774
No 11
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-19 Score=140.98 Aligned_cols=67 Identities=30% Similarity=0.501 Sum_probs=61.1
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||+++.. .+.|++|++||++|+|+.+|..||..+.
T Consensus 6 ~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 6 KETKLYDLLGVSPSA-NEQELKKGYRKAALKYHPDKPTGD--TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp SCCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCTTSTTCC--HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCh--HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 457999999999997 789999999999999999998643 5799999999999999999999998764
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-19 Score=138.12 Aligned_cols=68 Identities=41% Similarity=0.650 Sum_probs=62.6
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||++++ +.++||++||+|++++|||+++. ..+++.|++|++||++|+|+.+|..||..+.
T Consensus 8 ~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 8 MANYYEVLGVQASA-SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCHHHHHTCCTTC-CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CcCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 46999999999997 67999999999999999999975 3788999999999999999999999999764
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-19 Score=144.51 Aligned_cols=68 Identities=28% Similarity=0.455 Sum_probs=63.7
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||++++ +.++||++||+|++++|||+++ .+.+++.|++|++||++|+|+.+|..||+.+.
T Consensus 19 ~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 19 TEDYYTLLGCDELS-SVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCHHHHTTCCTTS-CHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 46999999999997 7899999999999999999997 57899999999999999999999999999764
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.74 E-value=7e-19 Score=132.91 Aligned_cols=66 Identities=35% Similarity=0.614 Sum_probs=60.6
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
...|||+||||++++ +.++||++||+|++++|||+++.. .+.|+.|++||++|+|+.+|..||..+
T Consensus 6 ~~~~~y~iLgl~~~a-~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 6 KETGYYDVLGVKPDA-SDNELKKAYRKMALKFHPDKNPDG--AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp CCCCHHHHHTCCTTC-CHHHHHHHHHHHHHHTCTTTCTTC--HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCcCH--HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 457999999999987 789999999999999999998643 679999999999999999999999865
No 15
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=135.09 Aligned_cols=64 Identities=39% Similarity=0.580 Sum_probs=59.6
Q ss_pred cCccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcch
Q 021106 64 NNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTP 128 (317)
Q Consensus 64 ~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~ 128 (317)
....|||+||||++++ +.++||++||+|++++|||+++.+.+.++|+.|++||++|+|+.+|..
T Consensus 24 ~~~~~~y~iLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGA-SRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTC-CHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 3468999999999988 789999999999999999999988999999999999999999998864
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-18 Score=138.73 Aligned_cols=67 Identities=43% Similarity=0.654 Sum_probs=61.9
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++++ +.++||++||+|++++|||+++. ..+++.|+.|++||++|+|+.+|..||..+.
T Consensus 2 ~d~Y~iLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSA-SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTS-CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 4899999999998 78999999999999999999975 3588999999999999999999999999763
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.71 E-value=7.7e-19 Score=141.31 Aligned_cols=67 Identities=33% Similarity=0.643 Sum_probs=63.0
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++++ +.++||++||+|++++|||+++. +.+++.|++|++||++|+|+.+|..||..+.
T Consensus 3 ~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 3 QDYYEILGVSKTA-EEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCSTTTTSSCSSC-CHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 5999999999997 78999999999999999999974 7889999999999999999999999999774
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-18 Score=140.18 Aligned_cols=68 Identities=40% Similarity=0.595 Sum_probs=63.0
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY-PFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~-~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
...|||+||||++++ +.++||++||+|++++|||+++. +.+.+.|++|++||++|+|+.+|..||..+
T Consensus 15 ~~~~~Y~vLgv~~~a-s~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g 83 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA-TSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYG 83 (109)
T ss_dssp CSCCHHHHHTCCTTC-CHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred CCCCHHHHcCcCCCC-CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 346999999999998 88999999999999999999974 778999999999999999999999999865
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.69 E-value=4e-18 Score=138.39 Aligned_cols=70 Identities=33% Similarity=0.550 Sum_probs=64.0
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY----PFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~----~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++.+.++||++||+|++++|||++.. +.+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 457999999999986478999999999999999999975 6788999999999999999999999999873
No 20
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.63 E-value=5.2e-17 Score=143.66 Aligned_cols=67 Identities=34% Similarity=0.576 Sum_probs=62.6
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||++++ +.++||++||+|++++|||+++ .+.+.++|+.|++||++|+|+.+|+.||+.+.
T Consensus 2 ~~~y~~l~~~~~a-~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTA-SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTC-CHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 4999999999998 7899999999999999999996 57899999999999999999999999999764
No 21
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=1.8e-16 Score=140.02 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=58.2
Q ss_pred ccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcch----HHHHHHHHHHHHHHhcCCCCcchh
Q 021106 66 HHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYPF----ADQAFTLVVDAWGVLSDTRKKTPY 129 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~----A~~~f~~I~eAy~vLsDp~kR~~Y 129 (317)
..|||+||||++.+ +.++||++||+|++++|||+++... |++.|++|++||++|+|+.+|+.|
T Consensus 116 ~~d~Y~vLgv~~~A-s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLV-TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGS-SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCC-CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 36999999999998 7899999999999999999997543 889999999999999999999987
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.61 E-value=3.4e-17 Score=134.54 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=57.7
Q ss_pred cCceeeeecccCCCCH--HHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 67 HDWYSILQIDRRTDDQ--DLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~--~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
.|||+||||++.+ +. ++||++||+|++++|||+++. +++|++|++||+||+|+.+|+.||...
T Consensus 8 ~~~Y~iLgv~~~a-s~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLERSA-WGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCTTS-CSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 4899999999987 55 899999999999999999875 478999999999999999999999754
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.61 E-value=1e-16 Score=140.70 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=61.8
Q ss_pred ccCceeeeecccCCC-CHHHHHHHHHHHHHHhCCCCCCcch------HHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRTD-DQDLIKKQYRKLALLLHPDKNKYPF------ADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a~-~~~eIkkaYr~La~~~HPDkn~~~~------A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||+++++ |.++||++||+|++++|||+++... |.+.|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 469999999999873 5899999999999999999987542 67899999999999999999999999884
No 24
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.61 E-value=1.2e-16 Score=129.63 Aligned_cols=73 Identities=22% Similarity=0.512 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc--------hHHHHHHHHHHH
Q 021106 45 GSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP--------FADQAFTLVVDA 116 (317)
Q Consensus 45 ~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~--------~A~~~f~~I~eA 116 (317)
.+.+||..++.. +....|||+||+++. + +.++||++||+|++++||||++.+ .|+++|+.|++|
T Consensus 25 ~ir~lL~~l~~~------l~~~~d~Y~vl~~~~-A-s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~A 96 (106)
T 3ag7_A 25 NIRSLLSTLQYI------LWSGSGWKPVPLMDM-I-EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEA 96 (106)
T ss_dssp CHHHHHTTGGGT------SCTTSCCCCCCGGGS-C-SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hcccCCHHHHcCCCC-C-CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHH
Confidence 466665554432 234579999999996 6 789999999999999999998642 368899999999
Q ss_pred HHHhcCCCC
Q 021106 117 WGVLSDTRK 125 (317)
Q Consensus 117 y~vLsDp~k 125 (317)
|++|||+..
T Consensus 97 YevLsd~~~ 105 (106)
T 3ag7_A 97 WDHFNTLGP 105 (106)
T ss_dssp HHHHTTTCC
T ss_pred HHHHcCccc
Confidence 999999863
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.60 E-value=1.9e-16 Score=124.44 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=55.1
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCc--chHHHHHHHHHHHHHHhcCCCCcch
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKY--PFADQAFTLVVDAWGVLSDTRKKTP 128 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~--~~A~~~f~~I~eAy~vLsDp~kR~~ 128 (317)
.|+|+||||++++ +.++||++||+|++++|||+++. ..+++.|+.|++||++|+|...|..
T Consensus 16 ~~~y~vLgv~~~a-s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 16 KEVTSVVEQAWKL-PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHTTSS-CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4899999999998 67999999999999999999986 3588999999999999999887743
No 26
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.59 E-value=6.6e-16 Score=122.34 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=50.3
Q ss_pred cCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHHHHHHhcC
Q 021106 67 HDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNKYP----FADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~~~----~A~~~f~~I~eAy~vLsD 122 (317)
.++|+||||++.+ +.++||++||+|++++|||||+.. .|+++|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~a-s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV-TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS-SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999998 779999999999999999999753 388999999999999975
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.56 E-value=5.1e-16 Score=139.80 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=61.0
Q ss_pred ccCceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 66 HHDWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 66 ~~D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
..|||+||||++.+ .|.++||++||+|++++|||+++.. .|.+.|+.|++||+||+||.+|+.||..+.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 46999999999863 3789999999999999999998742 256789999999999999999999998774
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.56 E-value=4.5e-16 Score=119.71 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=54.2
Q ss_pred cCceeeeecccC--CCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhc
Q 021106 67 HDWYSILQIDRR--TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYD 130 (317)
Q Consensus 67 ~D~Y~VLgv~~~--a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD 130 (317)
.++|+||||+++ + +.++||++||+|++++|||++.+ .+.|++|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a-~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWG-DFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTT-CHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCC-CHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 389999999998 7 78999999999999999999854 579999999999999999888744
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.56 E-value=5.4e-16 Score=135.72 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=60.2
Q ss_pred CceeeeecccCC-CCHHHHHHHHHHHHHHhCCCCCCcc------hHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 68 DWYSILQIDRRT-DDQDLIKKQYRKLALLLHPDKNKYP------FADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 68 D~Y~VLgv~~~a-~~~~eIkkaYr~La~~~HPDkn~~~------~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
|||+||||++++ .|.++||++||+|++++|||+++.. .|.+.|+.|++||+||+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 899999999975 2689999999999999999998753 255789999999999999999999999884
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.55 E-value=1.7e-16 Score=139.22 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred cCceeeeecccCCC-CHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 67 HDWYSILQIDRRTD-DQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 67 ~D~Y~VLgv~~~a~-~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
.|||+||||+++++ +.++||++||+|++++|||++++ +++|++|++||++|+|+.+|+.||+...
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 49999999999874 26999999999999999999876 3789999999999999999999999764
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.51 E-value=1.3e-15 Score=134.45 Aligned_cols=67 Identities=24% Similarity=0.418 Sum_probs=59.3
Q ss_pred CccCceeee------ecccCCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcccc
Q 021106 65 NHHDWYSIL------QIDRRTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDHEL 133 (317)
Q Consensus 65 ~~~D~Y~VL------gv~~~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~ 133 (317)
...|||+|| |+++...|.++||++||+|++++|||+++. +.+.|+.|++||++|+||.+|+.||..+
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 346999999 466533388999999999999999999976 6788999999999999999999999987
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.4e-15 Score=111.83 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=50.7
Q ss_pred cCceeeeeccc-CCCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcc
Q 021106 67 HDWYSILQIDR-RTDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKT 127 (317)
Q Consensus 67 ~D~Y~VLgv~~-~a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~ 127 (317)
.|+|+||||++ ++ +.++||++||+|++++|||++.+ .+.|+.|++||++|+|+..|.
T Consensus 14 ~~~y~iLgl~~~~a-~~~eIk~ayr~l~~~~HPDk~g~---~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 14 KEALQILNLTENTL-TKKKLKEVHRKIMLANHPDKGGS---PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHTTCCTTTC-CHHHHHHHHHHHHHHHCGGGTCC---HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHhhhhhcC
Confidence 48999999998 56 78999999999999999999743 469999999999999987763
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=1.4e-13 Score=129.63 Aligned_cols=118 Identities=29% Similarity=0.326 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQY 89 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkkaY 89 (317)
+.-+..++..++..+++..|...+.++.+++|....+...+..+.....- ....|+|.+||+.+.+ +.++|+++|
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~~~~y~~lg~~~~~-~~~~~~~~y 403 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ----SQKRDYYKILGVKRNA-KKQEIIKAY 403 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH----HHSCCSGGGSCSSTTC-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc----ccchhHHHHhCCCccC-CHHHHHHHH
Confidence 34455566677788888888888888888888765544444433322221 1345999999999987 568999999
Q ss_pred HHHHHHhCCCCCCcch----HHHHHHHHHHHHHHhcCCCCcchhccc
Q 021106 90 RKLALLLHPDKNKYPF----ADQAFTLVVDAWGVLSDTRKKTPYDHE 132 (317)
Q Consensus 90 r~La~~~HPDkn~~~~----A~~~f~~I~eAy~vLsDp~kR~~YD~~ 132 (317)
+++++++|||+.+.+. +++.|+.|++||++|+|+++|..||+.
T Consensus 404 ~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp HHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred HHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 9999999999998644 889999999999999999999999973
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.38 E-value=1.9e-14 Score=149.91 Aligned_cols=69 Identities=33% Similarity=0.567 Sum_probs=39.9
Q ss_pred CccCceeeeecccCCCCHHHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHHHHHHhcCCCCcchhccccC
Q 021106 65 NHHDWYSILQIDRRTDDQDLIKKQYRKLALLLHPDKNK-YPFADQAFTLVVDAWGVLSDTRKKTPYDHELS 134 (317)
Q Consensus 65 ~~~D~Y~VLgv~~~a~~~~eIkkaYr~La~~~HPDkn~-~~~A~~~f~~I~eAy~vLsDp~kR~~YD~~~~ 134 (317)
...|||+||||++++ +.++||++||+|++++|||+++ .+.++++|++|++||++|+||.+|+.||+.+.
T Consensus 19 ~~~~~y~~lg~~~~a-~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 19 HDQNFYSLLGVSKTA-SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp ----CHHHHTCCTTC-CHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCHHHHcCCCCCC-CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 456999999999998 7899999999999999999995 57789999999999999999999999999764
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=7.1e-08 Score=71.36 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=43.1
Q ss_pred ceeeeecccC---CCCHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcC
Q 021106 69 WYSILQIDRR---TDDQDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 69 ~Y~VLgv~~~---a~~~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsD 122 (317)
-|.||||++. + +.++|+++||+|....|||+..+ .-....|++|+++|..
T Consensus 6 A~~ILgv~~~~~~a-~~~~Ik~~yr~Lm~~nhPDkGGS---~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 6 SCKILNIEESKGDL-NMDKINNRFNYLFEVNDKEKGGS---FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHTTCCGGGTCC-SHHHHHHHHHHHHHHTCGGGTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcC-CHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHH
Confidence 3789999988 6 78999999999999999999744 4578889999999853
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.04 E-value=0.0013 Score=67.25 Aligned_cols=103 Identities=20% Similarity=0.095 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH-------------------HHHHHH-----------------
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD-------------------QILAVV----------------- 53 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~-------------------~ilav~----------------- 53 (317)
+..+..+|.-++..+++++|...+.+|.+++|....+. .+..+.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~ 613 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIR 613 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 45677788889999999999999999999999632211 111111
Q ss_pred -HHHHHHHH-hhcCccCceeeeecccCCCC-HHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Q 021106 54 -DVLLAAEK-RVNNHHDWYSILQIDRRTDD-QDLIKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGV 119 (317)
Q Consensus 54 -dvl~aa~~-~~~~~~D~Y~VLgv~~~a~~-~~eIkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~v 119 (317)
+++.++.. ......|||.|||++.+... ..+|+++||+|+++-+++ ++.+.+|..|..|
T Consensus 614 ~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 614 ALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 11111111 22345689999999765311 156999999999966555 4689999999876
No 37
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.18 E-value=0.011 Score=46.75 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=48.1
Q ss_pred ccccccc-cceecccCceeEEeecceecccccccCCCCCCeeeccc-CCCCCccCCCCeeEecccceecccc
Q 021106 179 DQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGFHAALV-PNLPPLVSGKDAYYCCWGFFPLGFV 248 (317)
Q Consensus 179 d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~v-p~~Pp~v~G~~~~~c~wgffp~gf~ 248 (317)
++.+.+. ||+++..++.+.++|.+ ...|+.|+++...-.. +...|.|.|+++....-|+|-+..+
T Consensus 3 ~~~~~l~vslee~~~G~~~~i~~~~-----~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~ 69 (104)
T 2ctt_A 3 SGSSGMELTFNQAAKGVNKEFTVNI-----MDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRST 69 (104)
T ss_dssp CCCCCCCCCCSSCCSSSCTTCCSSC-----CEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEE
T ss_pred ceEEEEEEEHHHHcCCCEEEEEeee-----eeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEE
Confidence 4455666 99999999999999988 5899999998743211 1234779999977666677655543
No 38
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=94.73 E-value=0.02 Score=52.20 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCcccccccc-cceecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCee
Q 021106 176 DGEDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAY 236 (317)
Q Consensus 176 ~g~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~ 236 (317)
++.|+.+.+. ||.++..+|.+.+.|.+ ...|+.|+++.-.-......|.|.|++..
T Consensus 10 ~g~d~~~~l~vslee~~~G~~k~i~~~r-----~~~C~~C~G~G~~~g~~~~C~~C~G~G~~ 66 (248)
T 1nlt_A 10 RGKDIKHEISASLEELYKGRTAKLALNK-----QILCKECEGRGGKKGAVKKCTSCNGQGIK 66 (248)
T ss_dssp BCCCEEEEEEECTTHHHHCEEEEEEEEE-----EEECTTTTTCSBSTTTCCCCTTSSSSSCE
T ss_pred CCCCEEEEEEecHHHhcCCceEEEEeeE-----EEeCCCCcCccCCCCCCccCCCCCCCcEE
Confidence 4678888888 99999999999999988 58999999988544333456789999854
No 39
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.14 Score=39.02 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+|+.+..++..++..+++..|...+.+|.+++|...
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 38 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 38 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 4688999999999999999999999999999999754
No 40
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=90.76 E-value=0.36 Score=37.69 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.|..+.+++..++..+|++.|..++.+|.+++|...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~ 42 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI 42 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 56788889999999999999999999999999999743
No 41
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.59 E-value=0.72 Score=33.45 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQ 88 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkka 88 (317)
+++.+..++..++..+++..|...+.+|.+++|....+ ......++.. + . +.++-.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~--------------~-----g-~~~~A~~~ 60 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG--YSNKAMALIK--------------L-----G-EYTQAIQM 60 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHH--------------T-----T-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHH--------------h-----c-CHHHHHHH
Confidence 47788899999999999999999999999999975321 1111111111 0 1 23445555
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcC
Q 021106 89 YRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSD 122 (317)
Q Consensus 89 Yr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsD 122 (317)
|++ ++.+.|+.............+..++..|.+
T Consensus 61 ~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 61 CQQ-GLRYTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHH-HHTSCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHhCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 555 466777753222223455666777777763
No 42
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.52 E-value=0.48 Score=37.05 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
|-+.|+.+.+++..++..+|+..|...+.+|.+++|....
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~ 48 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI 48 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 5588999999999999999999999999999999997543
No 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.61 E-value=1.1 Score=36.59 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.+.++.+..++..++..+++..|...+.++..++|....+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 72 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY 72 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45778889999999999999999999999999999975543
No 44
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=85.53 E-value=2.1 Score=33.99 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+...++.+..++..++..+++..|..++.++.+++|...
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 45 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP 45 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH
Confidence 457899999999999999999999999999999999754
No 45
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=85.38 E-value=3.8 Score=34.62 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
..+|..++.++..++..+++..|...+.+|.+++|..
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 5689999999999999999999999999999999984
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=84.10 E-value=2 Score=34.38 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.+.-+..++..++..||++.|...+.+|.+++|....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~ 40 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE 40 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4667788999999999999999999999999997543
No 47
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=83.59 E-value=1.7 Score=34.51 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+.-+..+|..++..+++..|...+.+|.+++|..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 34566778888999999999999999999999975
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=83.16 E-value=2.3 Score=33.14 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.+.++.+..+|..++..+++..|..++.++..++|....
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 53 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR 53 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH
Confidence 4567888999999999999999999999999999997543
No 49
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=83.16 E-value=0.34 Score=35.83 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=23.2
Q ss_pred cccCceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+||-|+...+|... ...|.|++|+..|
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (70)
T 2js4_A 10 VCPVCKGRLEFQRA--QAELVCNADRLAF 36 (70)
T ss_dssp BCTTTCCBEEEETT--TTEEEETTTTEEE
T ss_pred ECCCCCCcCEEeCC--CCEEEcCCCCcee
Confidence 79999999988763 5678999999988
No 50
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=82.63 E-value=0.31 Score=35.88 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.1
Q ss_pred cccCceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+||-|+...+|.+. ...|.|++|+..|
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 10 VCPLCKGPLVFDKS--KDELICKGDRLAF 36 (68)
T ss_dssp BCTTTCCBCEEETT--TTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCC--CCEEEcCCCCcEe
Confidence 79999999888653 5678999999988
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=81.46 E-value=5.2 Score=28.93 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+...+..+..++..++..+++..|..++.++...+|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 45 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN 45 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC
Confidence 45678889999999999999999999999999999864
No 52
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.15 E-value=0.42 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.9
Q ss_pred cccCceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+||-|+...+|.+ ....|.|++|+..|
T Consensus 10 ~CP~ck~~L~~~~--~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 10 VCPVTKGRLEYHQ--DKQELWSRQAKLAY 36 (68)
T ss_dssp BCSSSCCBCEEET--TTTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeC--CCCEEEcCCCCcEe
Confidence 7999999888865 35678999999988
No 53
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=80.86 E-value=0.36 Score=35.58 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.0
Q ss_pred cccCceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+||-|+...+|.+. ...|.|++|+..|
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 10 ACPICKGPLKLSAD--KTELISKGAGLAY 36 (69)
T ss_dssp CCTTTCCCCEECTT--SSEEEETTTTEEE
T ss_pred eCCCCCCcCeEeCC--CCEEEcCCCCcEe
Confidence 79999999888763 5678999999988
No 54
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=80.45 E-value=0.45 Score=34.91 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.9
Q ss_pred cccCceeEEeecceecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
+||-|+...+|.. ....|.|++|+..|
T Consensus 12 ~CP~ck~~L~~~~--~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 12 ACPKDKGPLRYLE--SEQLLVNERLNLAY 38 (67)
T ss_dssp BCTTTCCBCEEET--TTTEEEETTTTEEE
T ss_pred CCCCCCCcCeEeC--CCCEEEcCCCCccc
Confidence 7999999888865 35678999999998
No 55
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=80.04 E-value=4.4 Score=27.95 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
..+.-+..++..++..+++..|..++.++..++|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 457778889999999999999999999999999864
No 56
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=79.59 E-value=1.5 Score=32.67 Aligned_cols=36 Identities=6% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.-+..++..++..+++..|...+.++.+++|...
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 53 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS 53 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence 356677889999999999999999999999999753
No 57
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.32 E-value=7.4 Score=30.80 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.+.+..+..++..++..+++..|...+.++..++|....
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 56 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH
Confidence 4567888899999999999999999999999999997543
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=77.87 E-value=2.8 Score=33.28 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.+.+..+..+|.-++..++++.|..++.+|.+++|....+
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34567777888999999999999999999999999985443
No 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=76.96 E-value=2.9 Score=33.31 Aligned_cols=36 Identities=6% Similarity=-0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-|..++..++..++++.|...+.+|..++|....
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 445566778889999999999999999999997543
No 60
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.36 E-value=6 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+..|..++..+++..|...+.++.+++|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3567888999999999999999999999974
No 61
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.25 E-value=6.1 Score=29.59 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhCCCCcChHHHH
Q 021106 8 AEAERLLGVAEKLLNQRD---LNGSKEFAILAQETEPLLEGSDQIL 50 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D---~~gA~~~a~kA~~l~P~l~~~~~il 50 (317)
+.++.+...|+.++...+ ...|..++.+|..++|......-++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~l 49 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLI 49 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 447788888998877666 7999999999999999876554443
No 62
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=76.17 E-value=6 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.+.-+..+|..++..+++..|...+.++.+++|....
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 42 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34667888899999999999999999999999998544
No 63
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=75.24 E-value=5.3 Score=30.80 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQ 88 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkka 88 (317)
.+.-+..++.-++..+++..|...+.+|.+++|....+- .....++......-....+|-++|.++|+ + .+++..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~--~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~-~~a~~~ 120 (126)
T 4gco_A 46 NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY--IRKAACLVAMREWSKAQRAYEDALQVDPS--N-EEAREG 120 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-HHHHHH
T ss_pred CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHCcC--C-HHHHHH
Confidence 466778889999999999999999999999999854332 22222332111110111256667888875 3 457766
Q ss_pred HHHH
Q 021106 89 YRKL 92 (317)
Q Consensus 89 Yr~L 92 (317)
..++
T Consensus 121 l~~~ 124 (126)
T 4gco_A 121 VRNC 124 (126)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 64
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=75.10 E-value=6.9 Score=27.74 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
++..+..++..++..+++..|..++.++...+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 37 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN 37 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 57788899999999999999999999999999974
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=75.07 E-value=3.2 Score=32.23 Aligned_cols=36 Identities=8% Similarity=-0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-+..++.-++..+++..|...+.+|..++|....
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 445666788889999999999999999999997543
No 66
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=74.65 E-value=9.2 Score=26.18 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.-+..++.-++..+++..|...+.++.+++|....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 34556677888999999999999999999997543
No 67
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=73.89 E-value=0.92 Score=39.05 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=26.2
Q ss_pred cccccccc-cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 178 EDQRARLS-SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 178 ~d~~~~~~-tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
.|+.+.+. ||.+++.||.+.+.+.+ .|.+|++..
T Consensus 3 ~d~~~~l~islee~~~G~~k~i~i~~-------~c~~c~G~g 37 (181)
T 3agx_A 3 PPVTHDLRVSLEEIYSGCTKKMKISH-------KRLNPDGKS 37 (181)
T ss_dssp ---CEEEEECHHHHHHCEEEEEEEEE-------EEECTTSSC
T ss_pred CCEEEEEEEEHHHhcCCcEEEEEEec-------ccCCCCCce
Confidence 35566777 99999999999998865 599998854
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=73.82 E-value=22 Score=30.00 Aligned_cols=36 Identities=6% Similarity=-0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.+..+|.-++..+++..|...+.++...+|..+..
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 184 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA 184 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH
Confidence 344778889999999999999999999999986543
No 69
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=73.79 E-value=7.1 Score=30.69 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc-ChHHHHHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE-GSDQILAVVDVLL 57 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~-~~~~ilav~dvl~ 57 (317)
+..+..++..++..++++.|...+.+|..++|... .+...+..+...+
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999865 4444444444433
No 70
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=72.99 E-value=17 Score=25.69 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-+..++.-++..+++..|...+.++.+++|....
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence 445666788899999999999999999999998644
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=69.91 E-value=27 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.++.+..++..++..+++..|..++.++..++|...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 38 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM 38 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence 4678889999999999999999999999999998743
No 72
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=69.59 E-value=1.7 Score=30.54 Aligned_cols=25 Identities=32% Similarity=0.689 Sum_probs=21.9
Q ss_pred cccCceeEEeecceecccccccC--CCCCCe
Q 021106 190 ACPYCYILYEYPRVYENCCLRCE--NCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~--~C~~~F 218 (317)
+||-|+...+|.. ..|.|. .|+..|
T Consensus 12 ~CP~c~~~L~~~~----~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 12 ACPACHAPLEERD----AELICTGQDCGLAY 38 (56)
T ss_dssp CCSSSCSCEEEET----TEEEECSSSCCCEE
T ss_pred eCCCCCCcceecC----CEEEcCCcCCCcEE
Confidence 8999999888765 678999 899988
No 73
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=69.59 E-value=17 Score=28.44 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.+.-+..++..++..+++..|..++.+|.+++|....
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 3566788899999999999999999999999998543
No 74
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=68.62 E-value=12 Score=27.83 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
..+..+..++..++..+++..|...+.++..++|...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 43 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA 43 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH
Confidence 4578889999999999999999999999999999753
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=67.89 E-value=13 Score=27.33 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.-+..++..++..+++..|...+.++...+|..+..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 3556677999999999999999999999999986443
No 76
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.86 E-value=13 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
...+..+..+|..++..+++..|...+.++.+++|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 61 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP 61 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence 3567888999999999999999999999999999863
No 77
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=67.71 E-value=16 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.+.-+..++.-++..+++..|...+.++.+++|...
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 45677788889999999999999999999999999753
No 78
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=67.61 E-value=2.6 Score=29.90 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.-+..++..++..+++..|...+.++..++|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 39 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 4456677888999999999999999999999874
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=67.54 E-value=14 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.++.+..+|..++..+++..|...+.++..++|...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 47 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Confidence 46788999999999999999999999999999999743
No 80
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=67.32 E-value=8.3 Score=28.33 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+..+..++.-++..+++..|+..+.++..++|.....
T Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccH
Confidence 3445667788889999999999999999998865443
No 81
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=67.02 E-value=17 Score=28.65 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=25.0
Q ss_pred HHHHHHHHHH-HHhccCH--HHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEK-LLNQRDL--NGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek-~l~~~D~--~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-+..++.- ++..+++ ..|...+.++.+++|....
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~ 116 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHH
Confidence 3445566666 5677777 8888888888888876443
No 82
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=66.85 E-value=14 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
..+..++..++..+++..|...+.+|.+++|....+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a 53 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA 53 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 456778888999999999999999999999975443
No 83
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=66.17 E-value=9.1 Score=29.11 Aligned_cols=36 Identities=8% Similarity=-0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
++.+..++.-++..+++..|...+.+|.+++|....
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 445666778888999999999999999999997543
No 84
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=65.87 E-value=16 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+..+|..++..+++..|...+.++...+|...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 456789999999999999999999999999866
No 85
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.84 E-value=12 Score=27.86 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccCCCCHHHHHHH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRRTDDQDLIKKQ 88 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~eIkka 88 (317)
.+.-+..+|..++..+++..|...+.++.+++|....+ ......++......-.....|-++|.+.+. + .++...
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~~~ 138 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA--LYRRSQALEKLGRLDQAVLDLQRCVSLEPK--N-KVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS--C-HHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c-HHHHHH
Confidence 36778888999999999999999999999999975322 222333332211100011234456666654 2 456666
Q ss_pred HHHHH
Q 021106 89 YRKLA 93 (317)
Q Consensus 89 Yr~La 93 (317)
+.++.
T Consensus 139 l~~~~ 143 (148)
T 2dba_A 139 LRNIS 143 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 86
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=65.19 E-value=22 Score=26.36 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHH
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLL 57 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~ 57 (317)
..+|..++..+++..|..++.+|.+++|....+..-+..++.++
T Consensus 50 ~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 50 DYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHH
Confidence 34456667889999999999999999998765544444444433
No 87
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.78 E-value=14 Score=27.34 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVD 54 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~d 54 (317)
-+.+.|.+++.+++++|..++-+|...+|. ..+++.+++
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q---P~~LL~i~q 58 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ---PQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 467789999999999999999999999995 344444433
No 88
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=64.14 E-value=17 Score=26.32 Aligned_cols=36 Identities=11% Similarity=-0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-+..+|..++..++++.|..++.++..++|....
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 566777888899999999999999999999997443
No 89
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=63.86 E-value=22 Score=24.98 Aligned_cols=35 Identities=11% Similarity=-0.084 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
-+..+|.-++..+++..|...+.++.+++|....+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56667888899999999999999999999986543
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=62.81 E-value=59 Score=28.45 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 021106 81 DQDLIKKQYRKLALLLHP 98 (317)
Q Consensus 81 ~~~eIkkaYr~La~~~HP 98 (317)
+...+-.+|..++..+.-
T Consensus 111 ~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 344556667777776653
No 91
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=62.64 E-value=18 Score=25.42 Aligned_cols=35 Identities=9% Similarity=-0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|.-++..+++..|...+.++..++|...
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 45677788889999999999999999999999744
No 92
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=61.82 E-value=1.1e+02 Score=29.09 Aligned_cols=46 Identities=4% Similarity=-0.053 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHH
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVL 56 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl 56 (317)
.-+..+|..++..++++.|...+.+|.+++|....+...+..+..+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566777888888888888888888888766655555544333
No 93
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=61.64 E-value=19 Score=29.09 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|..++..+++..|..++.++.+++|...
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 122 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV 122 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence 45667788889999999999999999999998743
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=61.34 E-value=16 Score=29.44 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-|..++..++..++++.|...+.+|.+++|....
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 556777788899999999999999999999998554
No 95
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=61.28 E-value=46 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
...+..++.++..++..+++..|..++.++.+++|..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~ 81 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED 81 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC
Confidence 5678888899999999999999999999999998873
No 96
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=61.05 E-value=13 Score=38.30 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.|+.+..++.-++..|++++|...+++|.+++|...
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~ 43 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 43 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4455566667777777777777777777777777643
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=59.96 E-value=2.6 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 6 NRAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
|....+..+..|..++..+++..|...+.++.+++|....+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a 42 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV 42 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 44555667778888888888888888888888888875443
No 98
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=59.88 E-value=24 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|.-++..+++..|..++.++..++|...
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 55677788889999999999999999999998753
No 99
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=59.69 E-value=26 Score=24.73 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++..++..+++..|..++.++...+|...
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 45677788889999999999999999999988643
No 100
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=59.51 E-value=20 Score=29.05 Aligned_cols=37 Identities=11% Similarity=-0.035 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.++.++.++..++..+++..|...+.+|..+.|..+
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 4788899999999999999999999999999988754
No 101
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=59.09 E-value=20 Score=24.92 Aligned_cols=32 Identities=9% Similarity=-0.066 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.-+..+|.-++..++++.|...+.++.+++|.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 34556778888999999999999999999987
No 102
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=59.06 E-value=70 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETE 40 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~ 40 (317)
+.+|+.+..++..++..+++..|..++.++..++
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 35 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH 35 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999998
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=58.63 E-value=30 Score=26.10 Aligned_cols=35 Identities=14% Similarity=-0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|.-++..+++..|...+.++..++|...
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 55677788899999999999999999999999754
No 104
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.32 E-value=12 Score=27.76 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
.+.-+..+|..++..+++..|...+.++.+++|....+-
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 356678889999999999999999999999999977653
No 105
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=58.31 E-value=15 Score=26.73 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.....+..+|..++..+++..|...+.++...+|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 49 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 49 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 457778888999999999999999999999999864
No 106
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=58.29 E-value=27 Score=29.16 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLL 57 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~ 57 (317)
.+.+..+|.-.+..+||..|++++.++.+.+|....+..+...++...
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 455667788889999999999999999999998666655555555444
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=58.23 E-value=17 Score=26.94 Aligned_cols=37 Identities=3% Similarity=-0.137 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
...+.-+..++..++..+++..|..++.++..+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 42 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 42 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666666666666666666555443
No 108
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=58.20 E-value=8.3 Score=31.69 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
...+.-+..++.-++..+++..|..++.++..++|...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence 45566677888889999999999999999999999743
No 109
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=57.19 E-value=6.8 Score=35.78 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
-+..+|..++..+++..|...+.+|.+++|...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 456788889999999999999999999999643
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=56.96 E-value=19 Score=31.58 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
.++.++..|..++..+|+.+|...+.++.+++|....+.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 154 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG 154 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH
Confidence 345677889999999999999999999999999865443
No 111
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=56.85 E-value=13 Score=31.22 Aligned_cols=40 Identities=13% Similarity=-0.148 Sum_probs=34.1
Q ss_pred HHHHHH----HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 8 AEAERL----LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 8 ~eA~r~----~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
+.+..| ...+..+...+++++|...+.+|.+++|...++.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456667 7888999999999999999999999999866654
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=56.80 E-value=21 Score=25.57 Aligned_cols=33 Identities=6% Similarity=0.089 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+.-+..+|..++..+++..|..++.++..++|.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 556677788899999999999999999999884
No 113
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.46 E-value=17 Score=28.26 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHH
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAV 52 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav 52 (317)
-+.+.|.+++.++++.|..++-+|...+|. ..++|.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q---P~~LL~i 59 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ---PQQLLQV 59 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC---HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC---HHHHHHH
Confidence 467789999999999999999999999984 3444444
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=56.06 E-value=84 Score=25.86 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=14.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++..++..+|+..|...+.++.+.+|..+
T Consensus 47 lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 47 LIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34444445555555555555555555433
No 115
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=56.00 E-value=13 Score=26.95 Aligned_cols=36 Identities=3% Similarity=-0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
-+..++..++..+++..|...+.++.++.|......
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 455567778899999999999999999887655543
No 116
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=55.65 E-value=20 Score=36.96 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.+..++.-++..+++++|...+.+|.+++|....
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 34455567788899999999999999999997543
No 117
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.57 E-value=17 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 1 MEPNSNRAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 1 M~~~~~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
||| .-..|...+..|.+.-..+++..|...+..|.++
T Consensus 9 ~~~--~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDP--QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCh--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777 4557889999999999999999999999988654
No 118
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=55.42 E-value=55 Score=26.06 Aligned_cols=32 Identities=22% Similarity=-0.040 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
++|++-++.|+.++..+++..|-.++++|.+.
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 68999999999999999999999999988654
No 119
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.08 E-value=27 Score=25.83 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+-++..++..+|+..|.....++...+|..+..
T Consensus 47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 47 SLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 334677899999999999999999999984343
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=54.52 E-value=25 Score=31.82 Aligned_cols=37 Identities=0% Similarity=-0.218 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.+..+..++..++..+++..|...+.+|..++|...
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~ 181 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES 181 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc
Confidence 4678888899999999999999999999999999863
No 121
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=54.44 E-value=31 Score=25.44 Aligned_cols=34 Identities=15% Similarity=-0.122 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.-+..++.-++..+++..|...+.++.+++|..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 4456667788899999999999999999999974
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=54.37 E-value=39 Score=26.74 Aligned_cols=28 Identities=7% Similarity=-0.168 Sum_probs=13.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.++.-++..++++.|...+.++.+++|.
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3344444555555555555555555544
No 123
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=54.13 E-value=44 Score=27.65 Aligned_cols=36 Identities=8% Similarity=-0.078 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.++..|..++..+++..|...+.++.+.+|....+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 39 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 456778999999999999999999999999986543
No 124
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=54.12 E-value=64 Score=28.31 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCCCC
Q 021106 87 KQYRKLALLLHPDKN 101 (317)
Q Consensus 87 kaYr~La~~~HPDkn 101 (317)
..|.+.++.+||+..
T Consensus 255 ~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCh
Confidence 345555688999864
No 125
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=53.72 E-value=26 Score=25.86 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQ 48 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ 48 (317)
.+.-+..++.-++..+++..|..++.++..+.+.......
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3445666778888899999999999999888776655433
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=53.43 E-value=31 Score=24.30 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+..+..++..++..+++..|..++.++...+|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 42 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 46778888999999999999999999999998864
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.16 E-value=95 Score=26.83 Aligned_cols=39 Identities=3% Similarity=-0.195 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChH
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSD 47 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~ 47 (317)
.|..+..++.-+...+++..|...+.+|..+++......
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 355556666767778888888888888888877655443
No 128
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=53.14 E-value=31 Score=31.99 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
..+.-+..+|..++..+++..|..++.+|.+++|...
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 307 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT 307 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH
Confidence 4577888899999999999999999999999999743
No 129
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.73 E-value=31 Score=29.58 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.-+..++..++..+++..|..++.++.+++|...
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 3455678889999999999999999999998753
No 130
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=52.65 E-value=21 Score=33.09 Aligned_cols=17 Identities=12% Similarity=0.011 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHh
Q 021106 6 NRAEAERLLGVAEKLLN 22 (317)
Q Consensus 6 ~r~eA~r~~~iAek~l~ 22 (317)
+-++|.+..+.|.+++.
T Consensus 238 ~~~~Ai~~y~kAl~~~~ 254 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVE 254 (370)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 34677777777766543
No 131
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.42 E-value=30 Score=29.68 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+++.++.+|..++..+++..|..++.++...+|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 36 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 36 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 45667777777777777777777777777777764
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=52.38 E-value=22 Score=33.81 Aligned_cols=37 Identities=3% Similarity=-0.272 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.|..+..++..++..+++..|...+.+|.+++|...
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~ 302 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY 302 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence 5678888999999999999999999999999999864
No 133
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=50.09 E-value=23 Score=26.09 Aligned_cols=35 Identities=14% Similarity=-0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
-+..++..++..+++..|...+.++...+|..+.+
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455677899999999999999999999976544
No 134
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=49.59 E-value=3.9 Score=32.05 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=21.5
Q ss_pred cccCceeEEeecce-------------------------ecccccccCCCCCCe
Q 021106 190 ACPYCYILYEYPRV-------------------------YENCCLRCENCKRGF 218 (317)
Q Consensus 190 aC~gC~~~~ey~r~-------------------------y~~~~l~C~~C~~~F 218 (317)
+||.|+.-.+|... .+...|.|++|+..|
T Consensus 10 aCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 10 CSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred ECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 79999887776542 114568999999998
No 135
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=48.72 E-value=5.1 Score=27.76 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=25.1
Q ss_pred cccCCCCCCeeecccCCCCCccCCCCeeEecccceecccc
Q 021106 209 LRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPLGFV 248 (317)
Q Consensus 209 l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~gf~ 248 (317)
..|+.|+++..... .+.|.|.|++...-.-|-.+|||.
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGVILTAQGYTLLDFI 47 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSEEECHHHHHHHHHH
T ss_pred ccCCCCcceeccCC--CCCccCCCCccEEEEecccHHHHH
Confidence 47888888875543 345778888766655555666653
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=48.67 E-value=32 Score=31.05 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|..++..+++..|...+.+|.+++|...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 67788899999999999999999999999999754
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=48.26 E-value=33 Score=32.54 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|..++..+++..|..++.+|.+++|...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 351 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence 67778889999999999999999999999999753
No 138
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=48.18 E-value=33 Score=26.79 Aligned_cols=35 Identities=9% Similarity=-0.079 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++-+..++.-++..++++.|...+.+|.+++|...
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 45566677888999999999999999999999753
No 139
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.09 E-value=24 Score=29.31 Aligned_cols=42 Identities=14% Similarity=-0.105 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHH
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAV 52 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav 52 (317)
+-+..++.-++..+|+..|..++.++.+++|..+.+.+.+..
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 445557778888999999999999999999987666555433
No 140
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=46.87 E-value=31 Score=28.06 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHH-------HHhccCHHHHHHHHHHHHh
Q 021106 5 SNRAEAERLLGVAEK-------LLNQRDLNGSKEFAILAQE 38 (317)
Q Consensus 5 ~~r~eA~r~~~iAek-------~l~~~D~~gA~~~a~kA~~ 38 (317)
.|++|+++|+..|+. ++..+++..|-.++++|.+
T Consensus 4 ~~~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 4 GNPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 489999999998864 4456778877777777643
No 141
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=46.84 E-value=5.9 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=15.2
Q ss_pred cccCCCCCCeeecc-cCCCCCccCCCCeeEeccccee
Q 021106 209 LRCENCKRGFHAAL-VPNLPPLVSGKDAYYCCWGFFP 244 (317)
Q Consensus 209 l~C~~C~~~F~A~~-vp~~Pp~v~G~~~~~c~wgffp 244 (317)
..|+.|+++..... .+...|.|.|++.....-|||-
T Consensus 12 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~ 48 (79)
T 1exk_A 12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFA 48 (79)
T ss_dssp EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEE
T ss_pred eECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCE
Confidence 45555555542211 1112345555554333224443
No 142
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=46.42 E-value=11 Score=34.62 Aligned_cols=28 Identities=32% Similarity=0.258 Sum_probs=16.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
++.-++..+++..|...+.++..++|..
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3444555666666666666666655544
No 143
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=46.25 E-value=1e+02 Score=23.83 Aligned_cols=82 Identities=18% Similarity=0.058 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCceeeeecccC--CCCHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWYSILQIDRR--TDDQDLI 85 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y~VLgv~~~--a~~~~eI 85 (317)
+.|++-++.|+.++..+++..|-.++++|.+.. +. -+|+.-... +..+|--.+|++-.. ..+ .++
T Consensus 9 ~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~---------lK--alL~~~g~~-p~tH~l~~L~~~~~~~~~~~-~~~ 75 (127)
T 1ufb_A 9 EQARHNLRHAQGSLGLGDYAWACFAAQQAAEAA---------LK--GLHLARGQV-AWGHSILDLLADLPEDVDVP-EDL 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------HH--HHHHHTTCC-CCSSCHHHHHHTSCTTSCCC-HHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---------HH--HHHHHcCCC-CCCcCHHHHHHHHHhccCCC-HHH
Confidence 467788888888899999999998888875541 11 111110001 223343334443221 113 467
Q ss_pred HHHHHHHHHHhCCCCCC
Q 021106 86 KKQYRKLALLLHPDKNK 102 (317)
Q Consensus 86 kkaYr~La~~~HPDkn~ 102 (317)
.+.+..|...+.+-+.+
T Consensus 76 ~~~~~~L~~~yi~~RYp 92 (127)
T 1ufb_A 76 VEAAKVLDKYYIPTRYP 92 (127)
T ss_dssp HHHHHHHHTTSSTTTCG
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 77788887766655543
No 144
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=46.24 E-value=48 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDV 55 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dv 55 (317)
....+|.-.+..+||..|++++....+..|....+..+...++.
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556888999999999999999999999986655554444433
No 145
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=45.77 E-value=35 Score=31.19 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++.|+.++.+|..++..+++..|...+.++...+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 38 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED 38 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc
Confidence 568899999999999999999999999999999985
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.67 E-value=32 Score=30.10 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
|+.+..+|..++..+++..|...+.+|..++|...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 38 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA 38 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 56777888889999999999999999999988743
No 147
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=45.20 E-value=58 Score=26.67 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++..++..++++.|...+.++.+++|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 88 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNV 88 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 77788888999999999999998888743
No 148
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=44.83 E-value=42 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.+..++..++..+++..|..++.++...+|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 34 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 34 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc
Confidence 345667888888889999999988888887753
No 149
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=44.54 E-value=7.5 Score=22.89 Aligned_cols=10 Identities=70% Similarity=1.281 Sum_probs=5.4
Q ss_pred ccCCCCCCCC
Q 021106 308 KRGRPRKNPL 317 (317)
Q Consensus 308 ~~~~~~~~~~ 317 (317)
+|-||||.||
T Consensus 3 rrrrprkrpl 12 (28)
T 3ukw_C 3 RRRRPRKRPL 12 (28)
T ss_dssp ----CCCCCC
T ss_pred cccccccCCc
Confidence 5779999987
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=44.40 E-value=33 Score=26.00 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.-+..++..+...+++..|..++.+|...+|+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 33444556677889999999999999999886
No 151
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.73 E-value=64 Score=26.46 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLA 58 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~a 58 (317)
-+.-+|...+..+||..|++++....+..|....+..+...++..++
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~ 126 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 35556788899999999999999999999987666555555544433
No 152
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=43.61 E-value=42 Score=27.82 Aligned_cols=36 Identities=8% Similarity=0.034 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
++.+...|..++..+++..|...+.++...+|..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 39 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY 39 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 566788899999999999999999999999997553
No 153
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=43.51 E-value=32 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+..+...+..++..+++..|..++.++..++|..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~ 38 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED 38 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc
Confidence 45677778999999999999999999999998863
No 154
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=43.28 E-value=5.9 Score=27.42 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=25.5
Q ss_pred cccCCCCCCeeecccCCCCCccCCCCeeEecccceeccc
Q 021106 209 LRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPLGF 247 (317)
Q Consensus 209 l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~gf 247 (317)
..|+.|+++..-+. .+.+.|.|++...-.-|||=+-|
T Consensus 10 ~~C~~C~GsG~~i~--~~C~~C~G~G~v~~~~G~~~~~~ 46 (53)
T 3lcz_A 10 TTCPNCNGSGREEP--EPCPKCLGKGVILTAQGSTLLHF 46 (53)
T ss_dssp EECTTTTTSCEETT--EECTTTTTSSEEECHHHHHHHHH
T ss_pred ccCcCCcccccCCC--CcCCCCCCcEEEEEEeCchHHHH
Confidence 47888888876543 45577888887666666665544
No 155
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=43.23 E-value=59 Score=28.32 Aligned_cols=31 Identities=10% Similarity=-0.117 Sum_probs=16.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+..+|.-++..++++.|...+.++.+.+|..
T Consensus 222 ~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 222 ATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3344455555555555555555555555544
No 156
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.88 E-value=15 Score=24.49 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=21.7
Q ss_pred cccCcee-EEeecceecccccccCCCCCCeee
Q 021106 190 ACPYCYI-LYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 190 aC~gC~~-~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
+||.|.. .+.|.. ....+.|..|+-.|.-
T Consensus 7 ~CP~C~~~~l~~d~--~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 7 VCPACESAELIYDP--ERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCTTTSCCCEEEET--TTTEEEESSSCCBCCC
T ss_pred eCcCCCCcceEEcC--CCCeEECcccCCcccc
Confidence 6999977 666643 4567899999887743
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=42.60 E-value=76 Score=24.75 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+.-+..++.-++..+++..|..++.++..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666
No 158
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=42.49 E-value=20 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.475 Sum_probs=31.8
Q ss_pred cee--cccCceeEEee--------cceecccccccCCCCCCeeecccCCCCCccCCCCeeEecccceec
Q 021106 187 FWT--ACPYCYILYEY--------PRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPL 245 (317)
Q Consensus 187 Fwt--aC~gC~~~~ey--------~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~ 245 (317)
|-. .|..|.+.|.- .+.|...+..|..|++.+..- . ....-.+..||.--|-.+
T Consensus 5 fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g---~--~f~~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 5 FGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVG---D--RYLLINSDIVCEQDIYEW 68 (123)
T ss_dssp SSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTT---C--EEEECSSSEEEGGGHHHH
T ss_pred hCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCC---C--cEEeeCCEEEcHHHhHHH
Confidence 555 78888776641 244556678999999988211 0 112222357887665444
No 159
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=42.46 E-value=22 Score=31.79 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
..+.-+..++.-++..++++.|..++.++..+.+.
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555543
No 160
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=42.23 E-value=22 Score=29.08 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=5.7
Q ss_pred cccCceeEEee
Q 021106 190 ACPYCYILYEY 200 (317)
Q Consensus 190 aC~gC~~~~ey 200 (317)
.|..|-..++.
T Consensus 72 ~C~~CG~~~~~ 82 (139)
T 3a43_A 72 KCRNCNYEWKL 82 (139)
T ss_dssp EETTTCCEEEG
T ss_pred ECCCCCCEEec
Confidence 35555555544
No 161
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=42.13 E-value=20 Score=36.64 Aligned_cols=49 Identities=22% Similarity=0.080 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLA 58 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~a 58 (317)
+++.++.|++++..+|+.=|.+.+..+...+|.-..+.++++-+-..+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999987776666554443333
No 162
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=41.97 E-value=54 Score=27.07 Aligned_cols=30 Identities=17% Similarity=0.006 Sum_probs=18.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
..++..++..+++..|...+.++.+++|..
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 334455566666666666666666666653
No 163
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=41.89 E-value=30 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHHhhCCCCcChHHHHHHHH
Q 021106 24 RDLNGSKEFAILAQETEPLLEGSDQILAVVD 54 (317)
Q Consensus 24 ~D~~gA~~~a~kA~~l~P~l~~~~~ilav~d 54 (317)
++++.|..++.+|.+++|..+.....+.+.+
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5899999999999999998765555444433
No 164
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=41.74 E-value=67 Score=28.07 Aligned_cols=36 Identities=0% Similarity=-0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
+.-+..++.-++..+++..|..++.++..+.+....
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 444556677778889999999999999888776554
No 165
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=41.64 E-value=25 Score=28.21 Aligned_cols=37 Identities=3% Similarity=-0.007 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.-+..++..++..+++..|...+.+|.+++|....+
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 4567778888899999999999999999999886543
No 166
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=41.57 E-value=40 Score=27.90 Aligned_cols=31 Identities=13% Similarity=-0.133 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETE 40 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~ 40 (317)
+.-+..++.-++..++++.|...+.+|.+++
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 5566777888888888888888888888887
No 167
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=41.48 E-value=47 Score=25.94 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
..+...+...+..+++..|...+.++..++|...
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 107 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVYA 107 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 3344456666667777777777777777777643
No 168
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=41.45 E-value=57 Score=26.72 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
+.-+..++.-++..+++..|...+.++.+++|....+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4455667788899999999999999999999985543
No 169
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=41.17 E-value=41 Score=26.61 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=12.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++..++..+++..|...+.++.+.+|.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444444444444444444444443
No 170
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=41.15 E-value=33 Score=27.87 Aligned_cols=32 Identities=16% Similarity=-0.010 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhccCH-HHH---HHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDL-NGS---KEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~-~gA---~~~a~kA~~l 39 (317)
+.|.+.+..|...+..+|+ ... -..+.||+.+
T Consensus 27 dgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~I 62 (130)
T 1orj_A 27 DKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDI 62 (130)
T ss_dssp HHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999 777 6667776543
No 171
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=41.11 E-value=45 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
...+.-+..++..++..+++..|...+.++.+.+|...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 42 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE 42 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch
Confidence 45677788888889999999999999999999888643
No 172
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=40.72 E-value=37 Score=25.07 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
|+-|.+++.-++..+||..|..++.+|.+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~ 36 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLD 36 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhh
Confidence 56789999999999999999999999988753
No 173
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=40.61 E-value=1.4e+02 Score=29.84 Aligned_cols=36 Identities=17% Similarity=-0.088 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
++.++.+|..++..+++..|...+.+|.+++|....
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 445666778889999999999999999999997543
No 174
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=40.36 E-value=15 Score=34.12 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.|+.+..+|..++..+++..|...+.++.+++|...
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 59 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP 59 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc
Confidence 4678888888888888888888888888888888643
No 175
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=39.77 E-value=53 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.++.+...|..++..+++..|...+.++...+|..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 48 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH 48 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 35556666777777777777777777777776654
No 176
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.69 E-value=53 Score=24.16 Aligned_cols=39 Identities=10% Similarity=-0.040 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 1 MEPNSNRAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 1 M~~~~~r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
|......+.|...+..|.+.-..+++.+|..++..|.++
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443334678899999999999999999999999988654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.10 E-value=1.3e+02 Score=26.86 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcC---ccCce-eeeecccCCCCHHHH
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNN---HHDWY-SILQIDRRTDDQDLI 85 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~---~~D~Y-~VLgv~~~a~~~~eI 85 (317)
|.-...+|.-++..+++..|..++.++.......+.-...+.+.-.+...-..+++ -..+| +.|.+.....+...+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 33445667888899999999999999887765544333322222222111111100 00111 122222221122456
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCC
Q 021106 86 KKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTR 124 (317)
Q Consensus 86 kkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~ 124 (317)
+..++...-.+|-.......|...|...-+.+..+.+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 666666666666655544555555555555555554433
No 178
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.94 E-value=66 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHH
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLL 57 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~ 57 (317)
-+.-+|...+..+||..|++++....+..|....+..+...++...
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999998766555555544443
No 179
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=38.70 E-value=17 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.430 Sum_probs=28.1
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEeccc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWG 241 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wg 241 (317)
..|.-|... +..|.|..|.+.||-.=+.++-..+| .+.+||..-
T Consensus 6 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C 49 (60)
T 2puy_A 6 DFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRC 49 (60)
T ss_dssp SSCTTTCCC--------SSCEECSSSSCEECGGGSSSCCSSCC-CSCCCCHHH
T ss_pred CCCcCCCCC--------CcEEEcCCCCcCEECCcCCCCcCCCC-CCceEChhc
Confidence 346666542 34689999999999975554323344 346888653
No 180
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=38.58 E-value=43 Score=27.08 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETE 40 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~ 40 (317)
+.|.+.+..|+..+..+|+...-..+.||+.+.
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii 66 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIF 66 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987653
No 181
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=38.43 E-value=43 Score=26.12 Aligned_cols=35 Identities=20% Similarity=-0.034 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++..++..+++..|...+.++..++|...
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 78 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 45677788889999999999999999999999743
No 182
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=38.30 E-value=1.2e+02 Score=25.50 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
.-++..|+.++..+++..|..++.++...+|....+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 58 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC 58 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh
Confidence 346778899999999999999999999999975543
No 183
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=38.08 E-value=97 Score=28.97 Aligned_cols=70 Identities=11% Similarity=-0.036 Sum_probs=47.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHH-----------HHHHHHHHHhhcCccCceeeeecccCCCCHH
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAV-----------VDVLLAAEKRVNNHHDWYSILQIDRRTDDQD 83 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav-----------~dvl~aa~~~~~~~~D~Y~VLgv~~~a~~~~ 83 (317)
..++.++..+++..|...+.++...+|..|.+-..+-. .+++..... -+.+=|||+|. .
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~------~L~~eLG~~P~----~ 245 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT------TLADDLGIDPG----P 245 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HHHHHHSCCCC----H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHhCCCCC----H
Confidence 34577889999999999999999999998765432211 111111111 23456899984 4
Q ss_pred HHHHHHHHHHH
Q 021106 84 LIKKQYRKLAL 94 (317)
Q Consensus 84 eIkkaYr~La~ 94 (317)
+++.-|+++..
T Consensus 246 ~l~~l~~~il~ 256 (388)
T 2ff4_A 246 TLRALNERILR 256 (388)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 78899988643
No 184
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=37.24 E-value=77 Score=25.72 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=15.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 16 VAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 16 iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++..++..+++..|..++.+|..++|.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 455555555555555555555555554
No 185
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.08 E-value=14 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.661 Sum_probs=17.9
Q ss_pred ccCceeEEeecceecccccccCCCCCCee
Q 021106 191 CPYCYILYEYPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 191 C~gC~~~~ey~r~y~~~~l~C~~C~~~F~ 219 (317)
||.|...+..... ...+.|+.|+..|-
T Consensus 28 CP~C~~~~~~~~~--~~~v~C~~C~~~FC 54 (86)
T 2ct7_A 28 CAQCSFGFIYERE--QLEATCPQCHQTFC 54 (86)
T ss_dssp CSSSCCCEECCCS--CSCEECTTTCCEEC
T ss_pred CcCCCchheecCC--CCceEeCCCCCccc
Confidence 7788876654432 34568888888773
No 186
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.98 E-value=86 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-HHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 7 RAEAERLLGVAEK-LLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 7 r~eA~r~~~iAek-~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
-++|..+...|-. +...+++..|...+.+|..+++.+.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG 71 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567777766654 4568999999999999988876543
No 187
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.81 E-value=36 Score=26.81 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=11.5
Q ss_pred ecccCceeEEeecceeccccc-ccCCCCCC
Q 021106 189 TACPYCYILYEYPRVYENCCL-RCENCKRG 217 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l-~C~~C~~~ 217 (317)
-.|..|-..++... ... .||.|+..
T Consensus 74 ~~C~~CG~~~e~~~----~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPNA----LDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSCC----STTCCCSSSSSC
T ss_pred EEcCCCCCEEeCCC----CCCCcCccccCC
Confidence 34555555554422 123 45555544
No 188
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=36.55 E-value=82 Score=27.49 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.+.-+..++.-++..+++..|..++.++..+.+....
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 3445566677788899999999999999888776544
No 189
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=35.78 E-value=1e+02 Score=25.88 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.-+..++.-++..++++.|...+.++...+|...
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 206 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 3345556777889999999999999999988643
No 190
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=35.74 E-value=44 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
-+..++.-++..+++..|...+.++...+|...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 345556666666777777777777766666543
No 191
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=35.65 E-value=40 Score=29.37 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++.-++..+++..|...+.++..++|...
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 44556667778888999999999999988888643
No 192
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=35.40 E-value=25 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=28.1
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEeccc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWG 241 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wg 241 (317)
..|.-|... +..|.|.+|.+.||-.=+.++-+.++ .+.+||..-
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C 53 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIHCLNPPLPEIP-NGEWLCPRC 53 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSSSSSSCCSSCC-SSCCCCTTT
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHcccccCCCcCcCC-CCccCChhh
Confidence 346666531 34689999999999975544223344 246888764
No 193
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=35.24 E-value=51 Score=27.17 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|.+.+..|...+..+|+..+-..+.||+.+
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~I 62 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNI 62 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999988765
No 194
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=34.37 E-value=68 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
++.+..+|..++..+++..|...+.++..++|...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 71 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH
Confidence 77788888888888899999998888888888643
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.34 E-value=20 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=22.5
Q ss_pred ceecccCceeEEee--------cceec--ccccccCCCCCCe
Q 021106 187 FWTACPYCYILYEY--------PRVYE--NCCLRCENCKRGF 218 (317)
Q Consensus 187 FwtaC~gC~~~~ey--------~r~y~--~~~l~C~~C~~~F 218 (317)
|...|..|.+.|.- .+.|. ..+.+|..|++++
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L 42 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL 42 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC
Confidence 45678888776652 24555 6678999999988
No 196
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=34.34 E-value=1.2e+02 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
..|.-+..+|.-++..+++..|..++.+|..+++....
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 46677777888888999999999999999999887654
No 197
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.01 E-value=39 Score=26.89 Aligned_cols=33 Identities=12% Similarity=-0.037 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+.|..++..|.+.-..+++.+|..++..|.++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 578888888888888899999999999987544
No 198
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.98 E-value=21 Score=24.31 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=26.7
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEec
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCC 239 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~ 239 (317)
..|.-|... +..|.|..|.+.||..=+.++-..+| .+.+||.
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~ppl~~~p-~g~W~C~ 51 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICP 51 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSSSSSSCCCSCC-CSSCCCH
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECccCCCCcCCCC-CCceECh
Confidence 446667652 34689999999999975543222333 2457775
No 199
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=33.90 E-value=76 Score=26.04 Aligned_cols=37 Identities=11% Similarity=-0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
..+.-+..++..++..+++..|...+.++..++|...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 77 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP 77 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH
Confidence 4567777788888999999999999999999998743
No 200
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=33.72 E-value=8.7 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHH
Q 021106 27 NGSKEFAILAQETEPLLEGSDQILAVVDVLLAAE 60 (317)
Q Consensus 27 ~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~ 60 (317)
.-|..++.+..........--+++++.-+++|+.
T Consensus 60 ~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K 93 (358)
T 2pk2_A 60 NTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAK 93 (358)
T ss_dssp HHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 3444445555444333333447777777777764
No 201
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.50 E-value=8.9 Score=34.43 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=21.6
Q ss_pred ecccCceeEEeecce---e-cccccccCCCCCCeee
Q 021106 189 TACPYCYILYEYPRV---Y-ENCCLRCENCKRGFHA 220 (317)
Q Consensus 189 taC~gC~~~~ey~r~---y-~~~~l~C~~C~~~F~A 220 (317)
.+|-||.+.+.-... . -+.-+.|++|+|-.+-
T Consensus 199 ~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred CccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 489999998853221 1 1345799999996643
No 202
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=33.13 E-value=72 Score=30.55 Aligned_cols=35 Identities=14% Similarity=-0.020 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|..++..+++..|...+.+|.+++|...
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 57 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45566778888889999999999999999998754
No 203
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.02 E-value=20 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=24.7
Q ss_pred cceecccCceeEEee----------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY----------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey----------~r~y~~~~l~C~~C~~~F~ 219 (317)
+|...|..|.+.|.- .+.|-..+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV 46 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC
Confidence 466778888776652 3456667889999999883
No 204
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=32.25 E-value=22 Score=31.31 Aligned_cols=34 Identities=21% Similarity=0.588 Sum_probs=26.7
Q ss_pred ccceecccCceeEEeecceec-------ccccccCCCCCCe
Q 021106 185 SSFWTACPYCYILYEYPRVYE-------NCCLRCENCKRGF 218 (317)
Q Consensus 185 ~tFwtaC~gC~~~~ey~r~y~-------~~~l~C~~C~~~F 218 (317)
..|+-.|+.|...+.|+..+. -.-+.|++|+..+
T Consensus 19 ~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 19 VTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred ceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 489999999999999986543 2345799999876
No 205
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=31.79 E-value=1.1e+02 Score=26.58 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
...+.-+..++.-++..+++..|..++.++..+++....
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 466778888999999999999999999999999876543
No 206
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=31.76 E-value=2.1e+02 Score=24.44 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+....++..++.++..+++..|..++.++....+...
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~ 109 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh
Confidence 4556777889999999999999999999998887644
No 207
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=31.66 E-value=39 Score=25.60 Aligned_cols=35 Identities=0% Similarity=-0.126 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
..+.-+..++..++..+++..|...+.++...+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 40 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF 40 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 34555556666666677777777776666666664
No 208
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=31.52 E-value=95 Score=21.68 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
-+..++..++..+++..|..++.++...+|..
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 34556677888999999999999999998864
No 209
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.40 E-value=79 Score=22.99 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=34.2
Q ss_pred ccceecccCceeEEe------ecceecccccccCCCCCCeeecccCCCCCccCCCCeeEecccce
Q 021106 185 SSFWTACPYCYILYE------YPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFF 243 (317)
Q Consensus 185 ~tFwtaC~gC~~~~e------y~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgff 243 (317)
..+...|..|.+.|. ..+.|-..+.+|..|++.+... ..+.-.+..||.--|.
T Consensus 22 ~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~------~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYI------GFVEEKGALYCELCYE 80 (90)
T ss_dssp TTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSS------CBEESSSCEECHHHHH
T ss_pred CCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCC------EeEeECCEEECHHHHH
Confidence 378889999988763 2345666778999999988432 1222223578865544
No 210
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=37.51 E-value=10 Score=39.06 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHHhhcCccCce
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEKRVNNHHDWY 70 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~~~~~~~D~Y 70 (317)
+++.++.|++++..+|+.=|.+++..+...+|....+.++++-.-..+.-+..-..-++||
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~~~rn~y 521 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENALWRNMY 521 (668)
Confidence 5677788899999999999999999999999988777766655444444443333445666
No 211
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=30.93 E-value=85 Score=29.67 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++.+..++.-++..+++..|...+.+|.+++|.
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344556667777888888888888888888876
No 212
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=30.76 E-value=2e+02 Score=22.64 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQ 37 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~ 37 (317)
.++.+...+|..++..+++..|...+.++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 33 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ 33 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 678889999999999999999999999984
No 213
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=30.42 E-value=1e+02 Score=24.95 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
++.+..++..++..+++..|..++.++..++|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 38 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN 38 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence 47788899999999999999999999999998
No 214
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=30.29 E-value=47 Score=32.33 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+.++.+++..|..++..||+.+|.+.+..|.++--.
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~~ 414 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMDLAVE 414 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999887443
No 215
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=30.04 E-value=86 Score=29.64 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.+.-+..+|.-++..+++..|...+.+|.+++|...
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 345556666777778888888888888888888754
No 216
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=29.99 E-value=16 Score=33.83 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=24.8
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..|+-|+.|...+ |......+.-.|+.|+..+
T Consensus 22 ~l~~kc~~~~~~~-~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 22 GVWTKCDSCGQVL-YRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp -CEECCTTTCCCE-ETTHHHHTTTBCTTTCCBC
T ss_pred HHHHhhhhccchh-hHHHHHHHhCCCCCCCCCC
Confidence 7899999999854 5555666677999999766
No 217
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.71 E-value=1.2e+02 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
-.++.|++++..+|+..|.+.+.++...++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~ 38 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQS 38 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc
Confidence 457789999999999999999999999888743
No 218
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.67 E-value=44 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+.|...+..|.+.-..+++..|..++..|.+.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 568888999999999999999999998887544
No 219
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=29.57 E-value=29 Score=24.47 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=22.7
Q ss_pred cccccCCCCCCeeecccCCCCCccCCCCeeEeccc
Q 021106 207 CCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWG 241 (317)
Q Consensus 207 ~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wg 241 (317)
..|.|..|.+.||..=+.++-..+|. +.+||...
T Consensus 19 ~ll~CD~C~~~fH~~Cl~ppl~~~P~-g~W~C~~C 52 (66)
T 1xwh_A 19 ELICCDGCPRAFHLACLSPPLREIPS-GTWRCSSC 52 (66)
T ss_dssp SCEECSSCCCEECTTTSSSCCSSCCS-SCCCCHHH
T ss_pred CEEEcCCCChhhcccccCCCcCcCCC-CCeECccc
Confidence 46899999999999755432223332 46887654
No 220
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=29.41 E-value=87 Score=28.08 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
..++.+..++..++..+++..|...+.++...+|..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 59 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN 59 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc
Confidence 567777778888888888888888888888887763
No 221
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.28 E-value=20 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.578 Sum_probs=24.0
Q ss_pred cccCceeE----EeecceecccccccCCCCCCeeecccCC
Q 021106 190 ACPYCYIL----YEYPRVYENCCLRCENCKRGFHAALVPN 225 (317)
Q Consensus 190 aC~gC~~~----~ey~r~y~~~~l~C~~C~~~F~A~~vp~ 225 (317)
.||+|.+. ....+..---.+.|..|+..|.. .|+.
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~-~i~~ 63 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT-PITY 63 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE-ECCS
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe-ccCc
Confidence 49999765 34444444456799999999955 4554
No 222
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=29.16 E-value=1e+02 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.-+..+|.-++..+++..|..++.++..++|...
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 3455566777888999999999999999888643
No 223
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.89 E-value=27 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=23.6
Q ss_pred cceecccCceeEEee------cceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEY------PRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey------~r~y~~~~l~C~~C~~~F 218 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L 41 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQL 41 (70)
T ss_dssp CCCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBC
T ss_pred CCCCCCcccCCeeccceEEECccccCCCCCccCCCCCcC
Confidence 466778888776641 245556678999999987
No 224
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.80 E-value=20 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=28.6
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEeccc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWG 241 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wg 241 (317)
+.|..|..... ...-|.|..|.+.||..=|..+...++ .+.|||...
T Consensus 19 ~~C~~C~~~~~-----~~~mi~CD~C~~wfH~~Cv~~~~~~~~-~~~w~C~~C 65 (75)
T 2k16_A 19 WICPGCNKPDD-----GSPMIGCDDCDDWYHWPCVGIMAAPPE-EMQWFCPKC 65 (75)
T ss_dssp ECBTTTTBCCS-----SCCEEECSSSSSEEEHHHHTCSSCCCS-SSCCCCTTT
T ss_pred cCCCCCCCCCC-----CCCEEEcCCCCcccccccCCCCccCCC-CCCEEChhc
Confidence 45888876642 224689999999999963332111122 246888654
No 225
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=28.73 E-value=2.3e+02 Score=26.98 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=14.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 15 GVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 15 ~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.+|.-++..++++.|...+.++.+++|.
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3344445555555555555555555554
No 226
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=28.71 E-value=13 Score=31.61 Aligned_cols=27 Identities=7% Similarity=-0.160 Sum_probs=22.9
Q ss_pred Ccccccccc-cceecccCceeEEeecce
Q 021106 177 GEDQRARLS-SFWTACPYCYILYEYPRV 203 (317)
Q Consensus 177 g~d~~~~~~-tFwtaC~gC~~~~ey~r~ 203 (317)
+.|+.+.+. ||.+++.||.+.+++.+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~ 30 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRK 30 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEE
Confidence 457777887 999999999999999884
No 227
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=23 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=24.0
Q ss_pred cceecccCceeEEee--------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY--------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey--------~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG 44 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC
Confidence 466778888766542 2456667789999998873
No 228
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=27.98 E-value=1.4e+02 Score=22.36 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++.-++..+++..|...+.++...+|...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 45567778889999999999999999999988744
No 229
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=27.80 E-value=55 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++.-++..+++..|...+.++...+|...
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 45567788889999999999999999999998643
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=27.65 E-value=1.1e+02 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCC
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEP 41 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P 41 (317)
.-|+.-|+=-++.+++..|++.+.+|..+.|
T Consensus 95 Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 95 FVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3455555555666666666666666666655
No 231
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.40 E-value=25 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.679 Sum_probs=24.6
Q ss_pred cceecccCceeEEe-------ecceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYE-------YPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~e-------y~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|. ..+.|...+.+|..|++.+.
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~ 47 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT 47 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC
Confidence 45677888877664 23456667889999999884
No 232
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.99 E-value=25 Score=32.72 Aligned_cols=55 Identities=20% Similarity=0.524 Sum_probs=33.6
Q ss_pred eecccCceeEEeecceecccccccCCCCCCe----eecccCCCCCccCCCCeeEe--cccceecccc
Q 021106 188 WTACPYCYILYEYPRVYENCCLRCENCKRGF----HAALVPNLPPLVSGKDAYYC--CWGFFPLGFV 248 (317)
Q Consensus 188 wtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F----~A~~vp~~Pp~v~G~~~~~c--~wgffp~gf~ 248 (317)
+-.|..|...+.|.| +.|++|+.+- +.++--..||.-++.-++.| |-+++-+-+-
T Consensus 208 ~l~Cs~C~t~W~~~R------~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 208 YLSCSLCACEWHYVR------IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp EEEETTTCCEEECCT------TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred EEEeCCCCCEEeecC------cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhh
Confidence 678999999999988 8999999752 21221112232233334455 5556665553
No 233
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=26.89 E-value=91 Score=24.04 Aligned_cols=32 Identities=19% Similarity=-0.025 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.|++-++.|+.++..+++..|-.++++|.+.
T Consensus 9 ~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek 40 (122)
T 1wol_A 9 KQAERDLEEARYAKSGGYYELACFLSQQCAEK 40 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46788888888899999999999998887554
No 234
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=26.70 E-value=1.2e+02 Score=20.95 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+|.|...-|...|.-.|..-|.+.+++|.++
T Consensus 18 ~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 18 EQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 47888888899999999999999999998765
No 235
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=26.31 E-value=90 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILA 36 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA 36 (317)
..|+.-+..|+..|..++|..|++++.+|
T Consensus 32 ~~A~dKl~~A~~Am~~~~y~~Ar~lAEqA 60 (98)
T 4fm3_A 32 KLAQDKYAAAQIAMTAESYKKARLLAEQA 60 (98)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 35777788999999999999999999998
No 236
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.19 E-value=27 Score=25.58 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=14.4
Q ss_pred cccCceeEEeec--ceecccc--cccCCCCCCee
Q 021106 190 ACPYCYILYEYP--RVYENCC--LRCENCKRGFH 219 (317)
Q Consensus 190 aC~gC~~~~ey~--r~y~~~~--l~C~~C~~~F~ 219 (317)
.|..|.+.+... ..|+... ..|+.|+..+.
T Consensus 30 ~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 30 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 455555544321 1223333 46777766654
No 237
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=25.90 E-value=26 Score=23.21 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=21.4
Q ss_pred ccccccCCCCCCeeecccCCCCCccCCCCeeEecc
Q 021106 206 NCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCW 240 (317)
Q Consensus 206 ~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~w 240 (317)
+..|.|..|.+.||-.=+.++-..+| .+.+||..
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l~~~P-~g~W~C~~ 46 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPALYEVP-DGEWQCPA 46 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTCCSCC-SSCCSCTT
T ss_pred CCEEECCCCChhhCcccCCCCcCCCC-CCcEECcC
Confidence 34689999999999874432212233 24577754
No 238
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=25.66 E-value=1.7e+02 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
..|.-...+|.-++..+++..|..++.+|..+++....
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 45566666777788899999999999999998876554
No 239
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=25.09 E-value=1.4e+02 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+.-+..+|.-++..+++..|...+.++..++|.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 89 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS 89 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344455566666666666666666666666664
No 240
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.82 E-value=1.3e+02 Score=22.28 Aligned_cols=33 Identities=15% Similarity=-0.092 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+.|...+..|.+.-..+++.+|..++..|.+.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 568889999999999999999999998887544
No 241
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.69 E-value=27 Score=26.51 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=30.9
Q ss_pred cccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEecccce
Q 021106 190 ACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFF 243 (317)
Q Consensus 190 aC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgff 243 (317)
.|.-|..... .+..|.|..|.+.||..=+.+|-..+| .+.+||.....
T Consensus 18 ~C~vC~~~~~-----~~~ll~CD~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~ 65 (92)
T 2e6r_A 18 ICQVCSRGDE-----DDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKCIL 65 (92)
T ss_dssp CCSSSCCSGG-----GGGCEECTTTCCEECSSSSSSCCSSCC-SSCCCCHHHHH
T ss_pred CCccCCCcCC-----CCCEEEcCCCCchhccccCCCCcccCC-CCCcCCccCcC
Confidence 3666765432 244789999999999975543222333 34688887654
No 242
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=24.53 E-value=1.3e+02 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
+.-|+..+.-++..++++.|+..+.+|...
T Consensus 203 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456777788788889999999999999885
No 243
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=24.44 E-value=54 Score=29.11 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=11.4
Q ss_pred HHhccCHHHHHHHHHHHHhhCCC
Q 021106 20 LLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 20 ~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++..++++.|..++.++...+|.
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~ 65 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPL 65 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445555555555555555443
No 244
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=24.35 E-value=1.1e+02 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++.++..++..+++..|..++.++..++|.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 97 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG 97 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 444455555555555555555555555553
No 245
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=24.25 E-value=1.2e+02 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 12 RLLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 12 r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
.++.+|..++..+++..|..++.++...+|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 53 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE 53 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 3444455555555555555555555555553
No 246
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=28 Score=24.61 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=23.4
Q ss_pred cceecccCceeEEee----------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY----------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey----------~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|.- .+.|-..+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~ 46 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV 46 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC
Confidence 456677777765541 2455566789999998873
No 247
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.15 E-value=32 Score=23.44 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred cceecccCceeEEee------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey------~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFL 42 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCS
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCC
Confidence 466788888877751 2345556678999999883
No 248
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=24.13 E-value=1e+02 Score=21.51 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchhcc
Q 021106 86 KKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPYDH 131 (317)
Q Consensus 86 kkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~YD~ 131 (317)
.+.+|...+.-||+.. ..+..+.|.+.|..|+| |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK----VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC----HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4455666667788864 36789999999999997 666654
No 249
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.07 E-value=32 Score=23.95 Aligned_cols=50 Identities=18% Similarity=0.439 Sum_probs=28.6
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCc--cCCCCeeEeccc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPL--VSGKDAYYCCWG 241 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~--v~G~~~~~c~wg 241 (317)
..|.-|.....-. .+..|.|..|.++||..=+.++-.. ++-.+.+||..-
T Consensus 7 ~~C~vC~~~~~~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C 58 (66)
T 2yt5_A 7 GVCTICQEEYSEA---PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58 (66)
T ss_dssp CCBSSSCCCCCBT---TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHH
T ss_pred CCCCCCCCCCCCC---CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCC
Confidence 3566666542211 1456899999999998644332111 223456887643
No 250
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.77 E-value=30 Score=24.77 Aligned_cols=34 Identities=29% Similarity=0.745 Sum_probs=24.3
Q ss_pred cceecccCceeEEee--------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY--------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey--------~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 54 (82)
T 2ehe_A 13 TFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA 54 (82)
T ss_dssp CCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS
T ss_pred ccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC
Confidence 566778888877761 3445556778999998873
No 251
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=23.74 E-value=1.7e+02 Score=24.23 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcCh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEGS 46 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~~ 46 (317)
...+.-+..++.-++..+++..|..++.++..+.+.....
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 4567777888999999999999999999998887776543
No 252
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.67 E-value=43 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=17.2
Q ss_pred cccccccCCCCCCeeecccCCCCC
Q 021106 205 ENCCLRCENCKRGFHAALVPNLPP 228 (317)
Q Consensus 205 ~~~~l~C~~C~~~F~A~~vp~~Pp 228 (317)
+.....|+.|+..+....+.+.||
T Consensus 49 ~~~~~~CP~Cr~~~~~~~~~~~~~ 72 (78)
T 2ect_A 49 LEQHDSCPVCRKSLTGQNTATNPP 72 (78)
T ss_dssp HTTTCSCTTTCCCCCCSCSCCCCS
T ss_pred HHcCCcCcCcCCccCCcccCCCCC
Confidence 334568999999997766665554
No 253
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.66 E-value=34 Score=23.72 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=28.2
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEecc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCW 240 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~w 240 (317)
+.|+.|.+.+.-. ..-+-|..|...||..=|.-......-.+.|+|.-
T Consensus 7 ~~C~~C~~~~~~~----~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 7 GQCGACGESYAAD----EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp CCCSSSCCCCCSS----SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCCCCCccCCC----CCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 3477787765311 22467999999999964443322222224688753
No 254
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.53 E-value=2.5e+02 Score=21.59 Aligned_cols=37 Identities=3% Similarity=-0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCcC
Q 021106 9 EAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLEG 45 (317)
Q Consensus 9 eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~~ 45 (317)
.+.-+..++.-++..+++..|..++.+|..+......
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 61 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC
Confidence 4556667788899999999999999999987665443
No 255
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.52 E-value=1.2e+02 Score=22.70 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
.+.|...+..|.+.-..+++.+|..++..|.++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888888999999999999999999888654
No 256
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.11 E-value=33 Score=23.86 Aligned_cols=43 Identities=16% Similarity=0.391 Sum_probs=26.5
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeeecccCCCCCccCCCCeeEecc
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCW 240 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~w 240 (317)
..|.-|..- +..|.|..|.+.||-.=+.++...++ .+.+||..
T Consensus 12 ~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~p~l~~~p-~g~W~C~~ 54 (61)
T 2l5u_A 12 DYCEVCQQG--------GEIILCDTCPRAYHMVCLDPDMEKAP-EGKWSCPH 54 (61)
T ss_dssp SSCTTTSCC--------SSEEECSSSSCEEEHHHHCTTCCSCC-CSSCCCTT
T ss_pred CCCccCCCC--------CcEEECCCCChhhhhhccCCCCCCCC-CCceECcc
Confidence 456666542 34689999999999965543222233 23577764
No 257
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=23.04 E-value=1.2e+02 Score=26.12 Aligned_cols=35 Identities=14% Similarity=-0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|.-++..+++..|...+.+|.+++|...
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 34455567778888999999999999998888643
No 258
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.92 E-value=36 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=23.6
Q ss_pred cceecccCceeEEe------ecceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYE------YPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~e------y~r~y~~~~l~C~~C~~~F~ 219 (317)
++...|..|...|. ..+.|...+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLA 42 (70)
T ss_dssp CCSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCS
T ss_pred CCCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCC
Confidence 56677888876653 12455566789999998873
No 259
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.91 E-value=1.2e+02 Score=26.43 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+..++.-++..++++.|...+.++.+.+|.
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 445567788889999999999999988886
No 260
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.82 E-value=1.4e+02 Score=24.15 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
+.-+..+|.-++..+++..|...+.++..++|..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 3445566778889999999999999999998864
No 261
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=22.81 E-value=99 Score=28.10 Aligned_cols=29 Identities=17% Similarity=0.026 Sum_probs=16.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 14 LGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 14 ~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
+.++..+...|+.++|+..++++...+|.
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 33444455566666666666666666664
No 262
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.22 E-value=39 Score=27.89 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
++.-.|.+|.+.|+-. .....|+.|+...
T Consensus 130 ~~~y~C~~Cg~~~~~~----~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTL----PPGGVCPDCGSKV 158 (165)
T ss_dssp CCCEEESSSCCEESSC----CGGGBCTTTCCBE
T ss_pred cEEEECCCCCCcccCC----CCCCcCCCCCCcc
Confidence 6777899999998732 2235899999874
No 263
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=22.18 E-value=30 Score=31.71 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=24.1
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..|+-|+.|...+ |........-.|+.|+..+
T Consensus 28 ~l~~kc~~~~~~~-y~~~l~~~~~v~p~~~~~~ 59 (285)
T 2f9i_B 28 GIMTKCPKCKKIM-YTKELAENLNVCFNCDHHI 59 (285)
T ss_dssp SSEEECTTTCCEE-EHHHHHHTTTBCTTTCCBC
T ss_pred HHHHhhHhhCCcc-chhhhHHhcCcCCCCCCCC
Confidence 7899999998854 4444455566999998754
No 264
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.92 E-value=44 Score=25.13 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=22.3
Q ss_pred ecccCceeEEeecceecccccccCCCCCCeee
Q 021106 189 TACPYCYILYEYPRVYENCCLRCENCKRGFHA 220 (317)
Q Consensus 189 taC~gC~~~~ey~r~y~~~~l~C~~C~~~F~A 220 (317)
-.|++|-+...|... ...+.|+.|+..|..
T Consensus 28 y~Cp~CG~~~v~r~a--tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQG--TGIWQCSYCDYKFTG 57 (83)
T ss_dssp EECSSSCCEEEEEEE--TTEEEETTTCCEEEC
T ss_pred CcCCCCCCcceeccC--CCeEECCCCCCEecC
Confidence 369999887766543 445689999998855
No 265
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=21.81 E-value=50 Score=29.79 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCC
Q 021106 7 RAEAERLLGVAEKLLNQRDLNGSKEFAILAQETEPLL 43 (317)
Q Consensus 7 r~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l 43 (317)
.+.|..+...+..++..+++..|...+.+|..++|..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~ 212 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD 212 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 3578889999999999999999999999999999863
No 266
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.78 E-value=35 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.438 Sum_probs=23.9
Q ss_pred cceecccCceeEEee-----------cceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYEY-----------PRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~ey-----------~r~y~~~~l~C~~C~~~F~ 219 (317)
.|...|..|.+.|.= .+.|...+.+|..|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC
Confidence 466778888776651 2445566789999999883
No 267
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=21.68 E-value=43 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchh
Q 021106 85 IKKQYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPY 129 (317)
Q Consensus 85 IkkaYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~Y 129 (317)
-.+.+|...+.-||+.. ..+..+.|.+.|..|++.++..-.
T Consensus 13 f~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 13 WAKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566777777788864 457889999999999987754433
No 268
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=21.58 E-value=96 Score=21.39 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHhcCCCCcchh
Q 021106 88 QYRKLALLLHPDKNKYPFADQAFTLVVDAWGVLSDTRKKTPY 129 (317)
Q Consensus 88 aYr~La~~~HPDkn~~~~A~~~f~~I~eAy~vLsDp~kR~~Y 129 (317)
..|...+.-||+... ...+..+.|.+.|..|++.++..-.
T Consensus 15 ~~r~~~~~~~p~~~~--~~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 15 TCREEHKKKHPDASV--NFSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp HHHHHHHHHCTTCCC--CHHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred HHHHHHHHHCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 344444566888642 2356899999999999988765433
No 269
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.39 E-value=1.6e+02 Score=27.66 Aligned_cols=39 Identities=8% Similarity=-0.065 Sum_probs=27.4
Q ss_pred HHhccCHHHHHHHHHHHHhhCCCCcChHHHHHHHHHHHHHHH
Q 021106 20 LLNQRDLNGSKEFAILAQETEPLLEGSDQILAVVDVLLAAEK 61 (317)
Q Consensus 20 ~l~~~D~~gA~~~a~kA~~l~P~l~~~~~ilav~dvl~aa~~ 61 (317)
.+..++|.-|..|+.+..++.|.-+ .+..+..|+.++++
T Consensus 217 a~K~KNy~tAa~fArrLLel~p~~~---~a~qArkil~~ce~ 255 (325)
T 3mv2_A 217 HFKHKNFLQASYFAGEFLKIISSGP---RAEQARKIKNKADS 255 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSH---HHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHhc
Confidence 6778999999999999988888533 33335555555554
No 270
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=21.37 E-value=1.5e+02 Score=28.22 Aligned_cols=35 Identities=14% Similarity=-0.177 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..+|..++..+++..|...+.+|.+++|...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 34455566778889999999999999999998743
No 271
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=21.27 E-value=91 Score=27.77 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILAQET 39 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA~~l 39 (317)
..+.-+..++.-++..++++.|..++.+|..+
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777774
No 272
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=21.26 E-value=1.8e+02 Score=25.22 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
+.-+..++.-++..+++..|...+.++.+++|...
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 55667778888888999999999999999888743
No 273
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.22 E-value=42 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=22.7
Q ss_pred cceecccCceeEEeecceecccccccCCCCCC
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRG 217 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~ 217 (317)
...-.|..|-..++... ...++|+.|+.-
T Consensus 26 ~v~Y~C~~CG~~~e~~~---~d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSLSR---TDAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECCCT---TSTTCCSSSCCC
T ss_pred eEEEECCCCCCcceeCC---CCCccCCCCCce
Confidence 45668999999988763 456899999973
No 274
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.01 E-value=36 Score=24.01 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=22.4
Q ss_pred cceecccCceeEEee------cceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEY------PRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey------~r~y~~~~l~C~~C~~~F 218 (317)
.|...|..|.+.|.- .+.|-..+.+|..|++.+
T Consensus 3 ~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L 41 (73)
T 1wig_A 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMF 41 (73)
T ss_dssp CSCCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCC
T ss_pred cCcCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCC
Confidence 466778888766542 234445667899999888
No 275
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=20.98 E-value=51 Score=27.85 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=18.6
Q ss_pred ccccCCCCCCeeecccCCCCCccCCCCeeEecccceecccccCCC
Q 021106 208 CLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPLGFVAGNS 252 (317)
Q Consensus 208 ~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~gf~~~~~ 252 (317)
-..|+.|++.++ .+| +.|+|. |++. +|+.++.
T Consensus 78 l~~CP~C~G~l~----------y~~-~~Y~C~-G~is-ewtkC~~ 109 (160)
T 2riq_A 78 LLPCEECSGQLV----------FKS-DAYYCT-GDVT-AWTKCMV 109 (160)
T ss_dssp ECCCTTTCCCEE----------EET-TEEEEC-CEEE-TTEECCC
T ss_pred CCCCCCCCCEEE----------EeC-CeEEEC-CCCC-CcccCcc
Confidence 357888886442 123 456654 6665 5665544
No 276
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.88 E-value=42 Score=23.86 Aligned_cols=54 Identities=19% Similarity=0.431 Sum_probs=32.6
Q ss_pred cceecccCceeEEee--------cceecccccccCCCCCCeeecccCCCCCccCCCCeeEecccceec
Q 021106 186 SFWTACPYCYILYEY--------PRVYENCCLRCENCKRGFHAALVPNLPPLVSGKDAYYCCWGFFPL 245 (317)
Q Consensus 186 tFwtaC~gC~~~~ey--------~r~y~~~~l~C~~C~~~F~A~~vp~~Pp~v~G~~~~~c~wgffp~ 245 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+... ....-.+..||.--|.-+
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~------~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG------SFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS------CEEEETTEEEEHHHHHHH
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC------ccEeeCCEEECHHHHHHH
Confidence 566789999877652 234556678999999887321 111112347786555433
No 277
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.71 E-value=41 Score=23.11 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=23.1
Q ss_pred cceecccCceeEEe------ecceecccccccCCCCCCee
Q 021106 186 SFWTACPYCYILYE------YPRVYENCCLRCENCKRGFH 219 (317)
Q Consensus 186 tFwtaC~gC~~~~e------y~r~y~~~~l~C~~C~~~F~ 219 (317)
+|...|..|.+.|. -.+.|...+.+|..|++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~ 42 (69)
T 2cur_A 3 SGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA 42 (69)
T ss_dssp CCCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCT
T ss_pred CCcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCC
Confidence 45667777776553 12445566789999999873
No 278
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=20.70 E-value=1.4e+02 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 021106 8 AEAERLLGVAEKLLNQRDLNGSKEFAILA 36 (317)
Q Consensus 8 ~eA~r~~~iAek~l~~~D~~gA~~~a~kA 36 (317)
++|+.-++.|+.++..+++..|...+..|
T Consensus 10 ~~A~~~L~~A~~~~~~g~y~~a~~~ay~a 38 (126)
T 2hsb_A 10 RKAEKLVQDAKKEFEMGLYERCCSTAYYA 38 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 57888888899999999999665444433
No 279
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=36 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=23.4
Q ss_pred cceecccCceeEEee--------cceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEY--------PRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey--------~r~y~~~~l~C~~C~~~F 218 (317)
.|...|..|.+.|.- .+.|...+.+|..|++.+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 43 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL 43 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBT
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcC
Confidence 466788888876652 234555677999999887
No 280
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=20.67 E-value=1.2e+02 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=15.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhCCC
Q 021106 13 LLGVAEKLLNQRDLNGSKEFAILAQETEPL 42 (317)
Q Consensus 13 ~~~iAek~l~~~D~~gA~~~a~kA~~l~P~ 42 (317)
++.++..++..+++..|..++.++.+++|.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 96 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK 96 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 344455555555555555555555555554
No 281
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.54 E-value=1.7e+02 Score=24.46 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhCCCCc
Q 021106 11 ERLLGVAEKLLNQRDLNGSKEFAILAQETEPLLE 44 (317)
Q Consensus 11 ~r~~~iAek~l~~~D~~gA~~~a~kA~~l~P~l~ 44 (317)
.-+..++.-++..+++..|...+.++.+++|...
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 3445567777889999999999999999998743
No 282
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.42 E-value=54 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.477 Sum_probs=18.2
Q ss_pred cceecccCceeEEeecceecccccccCCCCCCe
Q 021106 186 SFWTACPYCYILYEYPRVYENCCLRCENCKRGF 218 (317)
Q Consensus 186 tFwtaC~gC~~~~ey~r~y~~~~l~C~~C~~~F 218 (317)
..--.|.-|-..+ +.=++.-.+|+.|+...
T Consensus 65 v~p~~C~~CG~~F---~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVF---KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBC---CCCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCee---cccCCCCCCCcCCCCCc
Confidence 3444677777665 22334456788887766
No 283
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=20.36 E-value=2.2e+02 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 021106 10 AERLLGVAEKLLNQRDLNGSKEFAILAQE 38 (317)
Q Consensus 10 A~r~~~iAek~l~~~D~~gA~~~a~kA~~ 38 (317)
+.-...++.-++..++++.|..++.+|..
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
Done!