Query 021108
Match_columns 317
No_of_seqs 193 out of 1252
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 3.3E-76 7.2E-81 563.9 28.4 314 4-317 95-408 (408)
2 KOG2287 Galactosyltransferases 100.0 2.4E-58 5.2E-63 442.5 20.9 238 48-315 95-336 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 4.7E-57 1E-61 454.4 21.8 238 41-315 378-623 (636)
4 KOG2288 Galactosyltransferases 100.0 2.4E-55 5.1E-60 392.9 18.3 265 45-317 8-273 (274)
5 PF01762 Galactosyl_T: Galacto 100.0 6.3E-51 1.4E-55 361.2 17.4 191 62-260 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.5E-34 5.4E-39 272.1 16.6 194 42-254 74-308 (382)
7 PF02434 Fringe: Fringe-like; 99.8 9.4E-21 2E-25 174.7 12.2 192 48-267 6-210 (252)
8 KOG2246 Galactosyltransferases 99.8 1.1E-17 2.4E-22 161.2 15.2 172 41-259 84-268 (364)
9 PLN03153 hypothetical protein; 99.3 2.4E-11 5.3E-16 120.1 15.8 185 47-266 121-319 (537)
10 KOG3708 Uncharacterized conser 98.2 6.1E-06 1.3E-10 81.4 9.6 195 49-313 27-240 (681)
11 PF01755 Glyco_transf_25: Glyc 96.5 0.052 1.1E-06 47.7 12.2 93 52-161 4-101 (200)
12 PF13641 Glyco_tranf_2_3: Glyc 96.4 0.15 3.2E-06 45.0 14.3 186 49-256 2-199 (228)
13 TIGR03469 HonB hopene-associat 95.8 0.52 1.1E-05 46.0 16.4 192 46-253 38-248 (384)
14 cd02520 Glucosylceramide_synth 95.5 0.87 1.9E-05 39.4 15.1 135 86-256 30-166 (196)
15 TIGR03472 HpnI hopanoid biosyn 95.3 0.54 1.2E-05 45.6 14.5 193 47-256 40-242 (373)
16 cd04192 GT_2_like_e Subfamily 94.4 1.4 3E-05 38.4 13.6 156 87-250 29-191 (229)
17 cd02510 pp-GalNAc-T pp-GalNAc- 94.2 3.7 7.9E-05 38.2 16.6 117 137-253 75-211 (299)
18 cd06439 CESA_like_1 CESA_like_ 93.2 4.9 0.00011 35.8 15.0 190 44-256 25-218 (251)
19 cd04186 GT_2_like_c Subfamily 92.9 4.3 9.4E-05 33.0 14.0 84 143-257 72-155 (166)
20 PF04646 DUF604: Protein of un 92.6 0.18 3.9E-06 46.5 4.6 53 214-266 12-68 (255)
21 cd04196 GT_2_like_d Subfamily 92.3 6.6 0.00014 33.6 15.2 171 65-253 11-190 (214)
22 PF00535 Glycos_transf_2: Glyc 92.2 4.3 9.4E-05 32.7 12.3 135 85-228 26-168 (169)
23 PF13506 Glyco_transf_21: Glyc 92.1 0.31 6.6E-06 42.4 5.3 122 131-258 17-145 (175)
24 cd02525 Succinoglycan_BP_ExoA 91.8 8.4 0.00018 33.8 16.7 161 85-257 30-198 (249)
25 PRK11204 N-glycosyltransferase 91.8 14 0.00029 36.2 18.1 187 46-255 52-248 (420)
26 cd06532 Glyco_transf_25 Glycos 91.2 2.7 5.9E-05 34.4 10.0 117 52-234 2-119 (128)
27 cd06421 CESA_CelA_like CESA_Ce 91.2 8.6 0.00019 33.5 13.8 118 138-261 77-207 (234)
28 cd06423 CESA_like CESA_like is 89.9 7.2 0.00016 31.3 11.5 152 65-229 10-170 (180)
29 cd04187 DPM1_like_bac Bacteria 89.8 8.3 0.00018 32.5 12.1 136 85-231 28-165 (181)
30 cd04195 GT2_AmsE_like GT2_AmsE 89.8 12 0.00025 32.0 13.9 109 137-254 72-188 (201)
31 cd04185 GT_2_like_b Subfamily 89.6 12 0.00027 31.9 14.2 93 134-255 69-162 (202)
32 cd04191 Glucan_BSP_ModH Glucan 89.3 8.5 0.00019 35.4 12.6 194 52-255 3-219 (254)
33 PRK14583 hmsR N-glycosyltransf 89.3 25 0.00053 35.0 17.9 187 47-255 74-269 (444)
34 cd06435 CESA_NdvC_like NdvC_li 88.1 17 0.00038 31.8 14.1 159 86-256 28-198 (236)
35 cd06433 GT_2_WfgS_like WfgS an 87.5 16 0.00034 30.6 15.8 115 135-256 65-183 (202)
36 cd06438 EpsO_like EpsO protein 86.7 15 0.00033 31.1 11.9 88 136-227 71-169 (183)
37 COG1215 Glycosyltransferases, 86.5 33 0.00071 33.3 15.9 190 47-255 53-253 (439)
38 cd06434 GT2_HAS Hyaluronan syn 86.3 18 0.0004 31.5 12.5 152 86-255 28-201 (235)
39 cd06427 CESA_like_2 CESA_like_ 86.1 24 0.00052 31.3 14.7 118 136-256 75-201 (241)
40 PF13632 Glyco_trans_2_3: Glyc 85.4 2.9 6.3E-05 35.8 6.7 116 148-266 1-125 (193)
41 cd04184 GT2_RfbC_Mx_like Myxoc 85.0 23 0.00049 30.1 16.8 156 86-257 31-191 (202)
42 TIGR03111 glyc2_xrt_Gpos1 puta 84.7 27 0.00058 34.7 14.0 199 48-264 49-266 (439)
43 cd06437 CESA_CaSu_A2 Cellulose 81.5 36 0.00079 29.8 14.5 112 137-255 79-201 (232)
44 PF10111 Glyco_tranf_2_2: Glyc 80.5 48 0.001 30.6 14.6 165 84-256 32-211 (281)
45 COG1216 Predicted glycosyltran 78.0 17 0.00037 34.0 9.5 138 114-254 55-207 (305)
46 cd06420 GT2_Chondriotin_Pol_N 77.7 39 0.00085 28.0 15.7 97 137-254 71-167 (182)
47 PRK10714 undecaprenyl phosphat 77.6 61 0.0013 30.8 13.2 134 85-230 37-174 (325)
48 PLN02726 dolichyl-phosphate be 77.2 53 0.0012 29.2 14.9 155 86-254 40-205 (243)
49 TIGR03030 CelA cellulose synth 76.1 76 0.0017 33.8 14.6 133 128-264 212-357 (713)
50 cd02526 GT2_RfbF_like RfbF is 71.1 70 0.0015 27.8 15.4 118 135-255 66-192 (237)
51 cd04179 DPM_DPG-synthase_like 66.1 75 0.0016 26.3 9.9 133 86-229 28-167 (185)
52 PRK14716 bacteriophage N4 adso 64.6 1.7E+02 0.0037 29.9 15.9 192 47-256 65-278 (504)
53 cd02514 GT13_GLCNAC-TI GT13_GL 60.7 35 0.00077 33.0 7.5 81 136-228 88-174 (334)
54 TIGR01556 rhamnosyltran L-rham 57.2 63 0.0014 29.4 8.4 113 136-253 65-187 (281)
55 cd04188 DPG_synthase DPG_synth 56.2 1.3E+02 0.0028 25.8 10.4 159 85-257 29-198 (211)
56 cd04190 Chitin_synth_C C-termi 56.0 18 0.00039 32.6 4.5 108 144-254 72-207 (244)
57 cd06913 beta3GnTL1_like Beta 1 54.1 1.4E+02 0.0031 25.7 10.7 43 138-180 77-119 (219)
58 PF03071 GNT-I: GNT-I family; 54.0 1.5E+02 0.0033 29.7 10.9 87 132-230 174-271 (434)
59 PRK05454 glucosyltransferase M 49.6 2.3E+02 0.005 30.2 12.0 120 43-170 119-245 (691)
60 PRK10018 putative glycosyl tra 44.1 2.7E+02 0.0058 25.9 12.2 105 47-170 4-110 (279)
61 PHA01631 hypothetical protein 41.2 83 0.0018 27.4 5.9 64 144-231 70-133 (176)
62 cd06442 DPM1_like DPM1_like re 39.6 2.4E+02 0.0052 24.0 15.6 85 144-229 77-167 (224)
63 COG4092 Predicted glycosyltran 38.8 1.6E+02 0.0034 28.0 7.6 80 84-168 36-117 (346)
64 PF13704 Glyco_tranf_2_4: Glyc 34.5 2E+02 0.0042 21.5 7.2 48 114-162 40-88 (97)
65 cd00761 Glyco_tranf_GTA_type G 31.9 2.3E+02 0.005 21.5 13.9 32 137-168 69-100 (156)
66 cd02522 GT_2_like_a GT_2_like_ 29.5 3.5E+02 0.0076 22.9 15.9 105 140-256 67-176 (221)
67 PF03452 Anp1: Anp1; InterPro 28.5 4.3E+02 0.0092 24.8 8.9 87 84-171 54-168 (269)
68 PRK11498 bcsA cellulose syntha 28.4 8.3E+02 0.018 26.9 15.5 121 131-255 326-457 (852)
69 PLN03181 glycosyltransferase; 27.8 4.4E+02 0.0095 26.5 9.1 92 65-159 109-212 (453)
70 PF09258 Glyco_transf_64: Glyc 24.8 1E+02 0.0023 28.2 4.2 102 144-252 74-182 (247)
71 PRK11234 nfrB bacteriophage N4 22.5 9.9E+02 0.021 25.7 16.3 193 46-256 61-275 (727)
72 KOG2547 Ceramide glucosyltrans 22.4 98 0.0021 30.6 3.5 80 86-171 114-196 (431)
73 PF05412 Peptidase_C33: Equine 21.6 66 0.0014 25.9 1.8 27 131-157 48-80 (108)
74 PF04666 Glyco_transf_54: N-Ac 21.3 6.4E+02 0.014 23.9 8.8 22 144-165 168-189 (297)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.3e-76 Score=563.87 Aligned_cols=314 Identities=76% Similarity=1.302 Sum_probs=287.3
Q ss_pred hhhhhhHHHHhhhhhHHHhhcccccCCCCCcCccCCCCCCCCCceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhc
Q 021108 4 RSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEE 83 (317)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~ 83 (317)
++|+|+|+.|+.+.++++..+...-.+.|+.+++...+...+++++|+|+|+|+|+|++||+|||+|||+......+++.
T Consensus 95 ~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~ 174 (408)
T PLN03193 95 QTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEE 174 (408)
T ss_pred HHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccccccccc
Confidence 68999999999999999998775555667766555557788899999999999999999999999999997654444445
Q ss_pred cCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHH
Q 021108 84 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 163 (317)
Q Consensus 84 ~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 163 (317)
..+++++||+|.+.+.++.++.+|++|+++|||||++||.|+|.|||+||+++|+|+.++++++|+||+|||+|||+++|
T Consensus 175 ~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L 254 (408)
T PLN03193 175 EKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATL 254 (408)
T ss_pred CCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHH
Confidence 67899999999987545688999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChH
Q 021108 164 GMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDV 243 (317)
Q Consensus 164 ~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv 243 (317)
+.+|.....++++|+|++..+|++.+++.|||+|++|.|+++++.|||||+|+|||||+++|+.|+.++..++.|++|||
T Consensus 255 ~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV 334 (408)
T PLN03193 255 GETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDV 334 (408)
T ss_pred HHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchh
Confidence 99998776666899999988888555677888998888888899999999999999999999999999889999999999
Q ss_pred HHHHHHhhCCCeEecCCCcccCCCCCcccccccCCcccccccccccccchhHHHHHHhhccCccchhhhccccC
Q 021108 244 SLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 317 (317)
Q Consensus 244 ~vG~~l~~l~v~~~~~~~F~~~~~~~~~~k~~~~~~C~~~~~~~~~~~~~~~~~l~~~H~~~p~~m~~~W~~~~ 317 (317)
+||+||.+|+|+++|+++||++.++.|+||+..+++|.++|+|+|+|+|++..+|..+|+.|+++..++|.++|
T Consensus 335 ~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 335 SLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred hhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-58 Score=442.47 Aligned_cols=238 Identities=24% Similarity=0.344 Sum_probs=218.0
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccccc
Q 021108 48 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYL 127 (317)
Q Consensus 48 ~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~ 127 (317)
+++|++|+|+++|++||+|||+|||++.. +.+..++++|++|.+.+.+ .+++.|.+|++.||||||+||.|+|.
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty~ 168 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTYF 168 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccchh
Confidence 89999999999999999999999999974 4578899999999998543 56899999999999999999999999
Q ss_pred chhHHHHHHHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhc-CCCCceeEEEee-ccceeccCCCcccccccccccC
Q 021108 128 ELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFGE 204 (317)
Q Consensus 128 NLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~-~~pv~r~~~~K~yvp~~~~~~~ 204 (317)
|||+||++++.|+.. |++++|++|+|||+|||+++|+.+|... .+.+.+|.|.+. ..+++|++.+|||||+..|
T Consensus 169 nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y--- 245 (349)
T KOG2287|consen 169 NLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY--- 245 (349)
T ss_pred chHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC---
Confidence 999999999999987 9999999999999999999999999998 788899999985 5688899999999999887
Q ss_pred CCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhC-CCeEecCCCcccCCCCCcccccccCCccccc
Q 021108 205 IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGL-DVEHVDDRRLCCGTPPDCEWKAQLGKTCVAT 283 (317)
Q Consensus 205 ~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l-~v~~~~~~~F~~~~~~~~~~k~~~~~~C~~~ 283 (317)
|.+.|||||+|+|||+|+++|++|++++..++.+++|||++|+||+.. ||.++++..|.... ...++|.
T Consensus 246 ~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~--------~~~~~~~-- 315 (349)
T KOG2287|consen 246 PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP--------LSFDPCC-- 315 (349)
T ss_pred CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc--------ccCCCCc--
Confidence 889999999999999999999999999999999999999999999887 99999888764321 2456676
Q ss_pred ccccccccchhHHHHHHhhccCccchhhhccc
Q 021108 284 FDWRCSGICKSVERIKEVHELCGEGEDTLWRA 315 (317)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~H~~~p~~m~~~W~~ 315 (317)
+++++++|..+|.||..+|+.
T Consensus 316 -----------~~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 316 -----------YRDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred -----------ccceEEEecCCHHHHHHHHHH
Confidence 899999999999999999974
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.7e-57 Score=454.37 Aligned_cols=238 Identities=21% Similarity=0.322 Sum_probs=205.9
Q ss_pred CCCCCCceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEE
Q 021108 41 GSMLKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRL 120 (317)
Q Consensus 41 ~~~~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~ 120 (317)
|..+..+++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++..|.+|+++||||||+
T Consensus 378 pL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~ 450 (636)
T PLN03133 378 PLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLM 450 (636)
T ss_pred CCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEE
Confidence 455567899999999999999999999999999752 2345689999999987 467899999999999999999
Q ss_pred eccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEee-ccceeccCCCccccccc
Q 021108 121 EHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEY 199 (317)
Q Consensus 121 df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-~~pv~r~~~~K~yvp~~ 199 (317)
||.|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|+.....+.+|+|++. +.+|+|++.+|||+|.+
T Consensus 451 dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ 530 (636)
T PLN03133 451 PFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPE 530 (636)
T ss_pred eeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHH
Confidence 99999999999999999999889999999999999999999999999877666789999985 45677999999999987
Q ss_pred ccccCCCCccCcCcCCCeeeecHHHHHHHHHhc--cccCCCCCChHHHHHHHhhC-----CCeEecCCCcccCCCCCccc
Q 021108 200 WKFGEIGNKYFRHATGQLYALSKDLATYISINQ--HLLHKYANEDVSLGSWFIGL-----DVEHVDDRRLCCGTPPDCEW 272 (317)
Q Consensus 200 ~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~--~~~~~~~~EDv~vG~~l~~l-----~v~~~~~~~F~~~~~~~~~~ 272 (317)
.| |...|||||+|+|||||+++|+.|+.++ ..++.|++||||+|+||+.+ .+.+.++.+|+
T Consensus 531 ey---p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~--------- 598 (636)
T PLN03133 531 EW---PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIY--------- 598 (636)
T ss_pred HC---CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCccc---------
Confidence 76 8999999999999999999999999875 57899999999999998633 34445554553
Q ss_pred ccccCCcccccccccccccchhHHHHHHhhccCccchhhhccc
Q 021108 273 KAQLGKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRA 315 (317)
Q Consensus 273 k~~~~~~C~~~~~~~~~~~~~~~~~l~~~H~~~p~~m~~~W~~ 315 (317)
.+.|. ..++.+|..+|+||..+|+.
T Consensus 599 ----~~~C~--------------~~~i~~H~~sP~eM~~lW~~ 623 (636)
T PLN03133 599 ----NEGCK--------------DGYVVAHYQSPREMLCLWQK 623 (636)
T ss_pred ----CCcCC--------------CCeEEEecCCHHHHHHHHHH
Confidence 23454 23577999999999999986
No 4
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-55 Score=392.87 Aligned_cols=265 Identities=67% Similarity=1.122 Sum_probs=248.1
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEe-cc
Q 021108 45 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 123 (317)
Q Consensus 45 ~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~d-f~ 123 (317)
+++++++|+|.|++++..||+++|+||......+++++...+|.++|++|+... ++....+|++|.++|+|++.+| .+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~-g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATL-GASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCc-cHHHHHHHHHHHHhcCCeEeechhH
Confidence 789999999999999999999999999999888888888999999999999443 5788999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCccccccccccc
Q 021108 124 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 203 (317)
Q Consensus 124 Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~ 203 (317)
|+|.+|+.||+.+|.+|...++++|++|+|||+|||++.|...|......+++|+||++++|++.+++.|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999988889999999999999999999999999 9999
Q ss_pred CCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEecCCCcccCCCCCcccccccCCccccc
Q 021108 204 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVAT 283 (317)
Q Consensus 204 ~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~~~~~~F~~~~~~~~~~k~~~~~~C~~~ 283 (317)
+.++ |.+|+.|+||+||+++|..|..++..+..+.+|||.+|.|+.+|+|+++|++++|... .++...+.|..+
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~-----~~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCST-----PKALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccc-----hhhhccceeeee
Confidence 7555 9999999999999999999999999999999999999999999999999999998753 266778899999
Q ss_pred ccccccccchhHHHHHHhhccCccchhhhccccC
Q 021108 284 FDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 317 (317)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~H~~~p~~m~~~W~~~~ 317 (317)
++|+|+|+|++..+|..+|..+-+.--..|..+|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999998888888887654
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=6.3e-51 Score=361.17 Aligned_cols=191 Identities=28% Similarity=0.359 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHH
Q 021108 62 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 141 (317)
Q Consensus 62 ~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~ 141 (317)
+||++||+|||+... ....+++++|++|.+.+.++.++..|.+|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999864 245889999999999855567888999999999999999999999999999999999998
Q ss_pred h-cCCceEEEEecCceeeeHHHHHHHHhhc--CCCCceeEEE-eeccceeccCCCcccccccccccCCCCccCcCcCCCe
Q 021108 142 S-MWDAEFYIKVDDDVHVNLATLGMTLAAH--RTKPRVYVGC-MKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQL 217 (317)
Q Consensus 142 ~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~ly~G~-~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~g 217 (317)
+ |++++|++|+|||+|||+++|.++|... ....+.+.|. ..+.++.|++.+|||+|+..| |.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 8889999999999999999999999987 3334445455 556778899999999998876 8999999999999
Q ss_pred eeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEecCC
Q 021108 218 YALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 260 (317)
Q Consensus 218 YvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~~~~~ 260 (317)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999864
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=272.14 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=159.0
Q ss_pred CCCCCceeEEEEEECCCCC--HHHHHHHHHHhhhcchh-hhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEE
Q 021108 42 SMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEK-RKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFL 118 (317)
Q Consensus 42 ~~~~~~~~lli~V~S~p~~--~~rR~aIR~TW~~~~~~-~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi 118 (317)
.=.++..+++++|+|..++ +.||++.|+||.+.... .+.+.-...+-++|+||.+++.+-+.+++|.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4456778899999999998 89999999999987642 12222245677899999998766689999999999999999
Q ss_pred EEec------------------cccccchhHHHHHHHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEE
Q 021108 119 RLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG 179 (317)
Q Consensus 119 ~~df------------------~Dsy~NLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G 179 (317)
++|| .|++.|||+||+++++|+.+ ||+++||+|+|||+|||+++++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788999999999999988 8999999999999999999999999765 45569999
Q ss_pred Eeecc-ceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccc--c---------------CCCCCC
Q 021108 180 CMKSG-PVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL--L---------------HKYANE 241 (317)
Q Consensus 180 ~~~~~-pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~--~---------------~~~~~E 241 (317)
.+... .+.| +.+||||+|+||+||+|+|+.|++.... + -.+..|
T Consensus 233 ~v~~~~~p~R------------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIWR------------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCcccc------------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 87531 1111 2369999999999999999999987433 1 224579
Q ss_pred hHHHHHHH-hhCCC
Q 021108 242 DVSLGSWF-IGLDV 254 (317)
Q Consensus 242 Dv~vG~~l-~~l~v 254 (317)
|+.+|.+| .+++-
T Consensus 295 DiMvG~vLr~~~k~ 308 (382)
T PTZ00210 295 DVMVGMILREKVVY 308 (382)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999999 55543
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.84 E-value=9.4e-21 Score=174.73 Aligned_cols=192 Identities=16% Similarity=0.179 Sum_probs=100.6
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHhhhcchhhhhhhccCcEEEEEE-eecCCCCCchhHHHHHHHHhhcCCEEEEecccc
Q 021108 48 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFV-IGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 125 (317)
Q Consensus 48 ~~lli~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~Fv-lG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Ds 125 (317)
-+++|+|+|++++. .|-.+|++||++.+.. ..|+ .... + ..|..+ .-.+++..+....
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~---d----~~l~~~--~~~~l~~~~~~~~ 65 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE---D----PSLPTV--TGVHLVNPNCDAG 65 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS---------HHHHHH--HGGGEEE------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc---c----cccccc--cccccccCCCcch
Confidence 36899999999855 5669999999999741 2343 3222 1 223222 2335666666555
Q ss_pred ccchhHHHHHHHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeec-cceeccCCCccccccccccc
Q 021108 126 YLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWKFG 203 (317)
Q Consensus 126 y~NLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~K~yvp~~~~~~ 203 (317)
+...+++.++.+.+... .++++|++++|||+||++++|+++|...++.+++|+|.... .+...-.......+
T Consensus 66 ~~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------ 139 (252)
T PF02434_consen 66 HCRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------ 139 (252)
T ss_dssp -------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc------
Confidence 55555555555555332 46889999999999999999999999999999999999753 33211000000000
Q ss_pred CCCCccCcC-cCCCeeeecHHHHHHHHHhcc--c-cCCC----CCChHHHHHHHhh-CCCeEecCCCcccCCC
Q 021108 204 EIGNKYFRH-ATGQLYALSKDLATYISINQH--L-LHKY----ANEDVSLGSWFIG-LDVEHVDDRRLCCGTP 267 (317)
Q Consensus 204 ~~~~~yP~Y-~~G~gYvlS~~l~~~l~~~~~--~-~~~~----~~EDv~vG~~l~~-l~v~~~~~~~F~~~~~ 267 (317)
+...| .| .+|+||+||+.++++|..... . .... ..||+.+|.|+.. |||..+|.+.|+.-.+
T Consensus 140 -~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp --------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11122 23 578999999999999965322 1 1112 2699999999988 9999999999987543
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.1e-17 Score=161.18 Aligned_cols=172 Identities=22% Similarity=0.287 Sum_probs=133.0
Q ss_pred CCCCCCceeEEEEEECCCCCHH-HHHHHHHHhhhcchhhhhhhccCcEEEEEEe---ecCCCCCchhHHHHHHHHhhcCC
Q 021108 41 GSMLKRKYFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGD 116 (317)
Q Consensus 41 ~~~~~~~~~lli~V~S~p~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~Fvl---G~~~~~~~~~~~~L~~E~~~~~D 116 (317)
..--..+..++++|+|++.+.. |-+++-+||++.++ +..|+. .+... .+.
T Consensus 84 ~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-----------~~~f~s~~~s~~~~--------------~f~- 137 (364)
T KOG2246|consen 84 ALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-----------KGIFFSPTLSKDDS--------------RFP- 137 (364)
T ss_pred hhccCCCceEEEEEEecCcCceeehhhhhcccccccC-----------cceecCccCCCCCC--------------cCc-
Confidence 4445577889999999888765 55799999999885 234554 33321 122
Q ss_pred EEEEeccccccchhHHHHHHHHHHHh--cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcc
Q 021108 117 FLRLEHIEGYLELSAKTKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKY 194 (317)
Q Consensus 117 Ii~~df~Dsy~NLt~Ktl~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~ 194 (317)
.|..+..|+|+++..||..+++++.+ -.+++|++|+|||||+.++||..+|...++++++|+|+... -
T Consensus 138 ~v~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~ 207 (364)
T KOG2246|consen 138 TVYYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------S 207 (364)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------c
Confidence 34678899999999999999999975 47999999999999999999999999999999999998631 1
Q ss_pred cccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccc----c-CCCC--CChHHHHHHHhhCCCeEecC
Q 021108 195 YEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL----L-HKYA--NEDVSLGSWFIGLDVEHVDD 259 (317)
Q Consensus 195 yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~----~-~~~~--~EDv~vG~~l~~l~v~~~~~ 259 (317)
+.... | --+|+||++|+++.+.+++.... + ..++ .||+-+|.||+.+||.+.+.
T Consensus 208 ~~~~~---------y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 208 YFQNG---------Y--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred ccccc---------c--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 12111 1 14899999999999998875322 2 2333 89999999999999987765
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.34 E-value=2.4e-11 Score=120.10 Aligned_cols=185 Identities=17% Similarity=0.113 Sum_probs=115.7
Q ss_pred ceeEEEEEECCCCCH-HHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEE-Ee---
Q 021108 47 KYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LE--- 121 (317)
Q Consensus 47 ~~~lli~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~-~d--- 121 (317)
--.++++|.++.+.. +|+..|+.+|....- . ..+|+.....+. .....| --|.. .|
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~~~~~~-------P~i~is~d~s~ 181 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--EGDDSL-------PPIMVSEDTSR 181 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--CCcCCC-------CCEEeCCCccc
Confidence 335888898877755 677999999997531 1 256665543210 000000 00111 01
Q ss_pred cc-ccccchhHH--HHHHHHHHHh--cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccc
Q 021108 122 HI-EGYLELSAK--TKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE 196 (317)
Q Consensus 122 f~-Dsy~NLt~K--tl~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yv 196 (317)
|. ++..+.... ...+...+.. .++++|++++|||||+.+++|+..|..++++++.|+|.....-
T Consensus 182 f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~----------- 250 (537)
T PLN03153 182 FRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH----------- 250 (537)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc-----------
Confidence 10 111222221 1112333322 5899999999999999999999999999999999999864210
Q ss_pred cccccccCCCCccCcCcCCCeeeecHHHHHHHHHhcccc----CCCCCChHHHHHHHhhCCCeEecCCCcccCC
Q 021108 197 PEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLL----HKYANEDVSLGSWFIGLDVEHVDDRRLCCGT 266 (317)
Q Consensus 197 p~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~----~~~~~EDv~vG~~l~~l~v~~~~~~~F~~~~ 266 (317)
....++ .|--.-+|+||+||+.+++.|....... +...-+|.-||.|+..+||..++.++|+...
T Consensus 251 ~qn~~f-----~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D 319 (537)
T PLN03153 251 SANSYF-----SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWD 319 (537)
T ss_pred cccccc-----ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccc
Confidence 000011 0111248999999999999988753222 2223588889999999999999999997754
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=6.1e-06 Score=81.44 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=122.6
Q ss_pred eEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccc
Q 021108 49 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLE 128 (317)
Q Consensus 49 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~N 128 (317)
.|+++|+|. ..---+|-+|=+.+-. ++.|+.+.+... .|.-+...+-.|+-
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 456667762 1445567777766532 466777765431 12222222223332
Q ss_pred hhHHH-HHHHHHHHh--cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCC
Q 021108 129 LSAKT-KTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEI 205 (317)
Q Consensus 129 Lt~Kt-l~~l~w~~~--~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~ 205 (317)
-..|+ .+.++++.. .-+++|++-+-|++|||...|++.+....-+.++|+|.-- +. .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~-------------~~-------g 137 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA-------------ED-------G 137 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh-------------hC-------c
Confidence 23333 345666655 4689999999999999999999999988888899999321 00 1
Q ss_pred CCccCcCc-CCCeeeecHHHHHHHHHhccccCCCC---CChHHHHHHHh---hCCCeEecC--CCcccCC--CC----Cc
Q 021108 206 GNKYFRHA-TGQLYALSKDLATYISINQHLLHKYA---NEDVSLGSWFI---GLDVEHVDD--RRLCCGT--PP----DC 270 (317)
Q Consensus 206 ~~~yP~Y~-~G~gYvlS~~l~~~l~~~~~~~~~~~---~EDv~vG~~l~---~l~v~~~~~--~~F~~~~--~~----~~ 270 (317)
... | .|.||+||+.++.+|-.+-.-+.-+. -.|+.+|.|+. +++.++.|. +.|.... |. ..
T Consensus 138 s~r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~ 213 (681)
T KOG3708|consen 138 SGR----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIP 213 (681)
T ss_pred cCc----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccch
Confidence 111 5 57999999999999988754443332 37899999994 445555543 2333321 11 12
Q ss_pred ccccccCCcccccccccccccchhHHHHHHhhcc-Cccchhhhc
Q 021108 271 EWKAQLGKTCVATFDWRCSGICKSVERIKEVHEL-CGEGEDTLW 313 (317)
Q Consensus 271 ~~k~~~~~~C~~~~~~~~~~~~~~~~~l~~~H~~-~p~~m~~~W 313 (317)
+|+. ...+++..+||.+ +|.+|+.+=
T Consensus 214 e~~~-----------------s~aFr~A~tv~pv~~p~d~yrLH 240 (681)
T KOG3708|consen 214 EWEG-----------------SPAFRSALTVHPVLSPADMYRLH 240 (681)
T ss_pred hhcC-----------------ChHHhhhhccCccCCHHHHHHHH
Confidence 3321 1228889999998 888888763
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.51 E-value=0.052 Score=47.68 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=51.7
Q ss_pred EEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEE-----eccccc
Q 021108 52 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRL-----EHIEGY 126 (317)
Q Consensus 52 i~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~-----df~Dsy 126 (317)
|.|.|-+...+||+.+.+..... ++.+-|+-|..... +.. .+....+..-... ...-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 35668888899999998776654 34466777665431 111 0111112111100 011111
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEecCceeeeHH
Q 021108 127 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 161 (317)
Q Consensus 127 ~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 161 (317)
-.=++-.+..++-+.+ .+.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1114455566666664 367999999999999865
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.36 E-value=0.15 Score=45.01 Aligned_cols=186 Identities=11% Similarity=-0.039 Sum_probs=85.7
Q ss_pred eEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCE--EEEeccccc
Q 021108 49 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGY 126 (317)
Q Consensus 49 ~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DI--i~~df~Dsy 126 (317)
.+.|+|++.-....-++.|+.--.+. ...++++++...+. +...+.+.+-.+.+... ..+...
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~--- 66 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP--- 66 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---
Confidence 36667776544444445555444322 13466666665443 22333454445556542 222211
Q ss_pred cch--hHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhc-CCCCceeEEEeeccc---eec----cCCCcccc
Q 021108 127 LEL--SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMKSGP---VLA----RKGVKYYE 196 (317)
Q Consensus 127 ~NL--t~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~~~p---v~r----~~~~K~yv 196 (317)
.|. +.|.- ++.++.+..+.+|++..|||+.+.++-|...+... .+.-.+..|.....+ ... .....|+.
T Consensus 67 ~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (228)
T PF13641_consen 67 RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHL 145 (228)
T ss_dssp --HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETT
T ss_pred CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhh
Confidence 222 23433 34555554569999999999999998888877776 343344444432111 100 00001111
Q ss_pred cccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 197 PEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 197 p~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
... ........ .++.|++.++.++++..+..-.. ....||..++.-+...|...
T Consensus 146 ~~~-~~~~~~~~--~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~ 199 (228)
T PF13641_consen 146 RFR-SGRRALGV--AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRI 199 (228)
T ss_dssp TS--TT-B------S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--E
T ss_pred hhh-hhhcccce--eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcE
Confidence 100 00001111 34689999999999999863222 33459999999997777654
No 13
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.81 E-value=0.52 Score=45.98 Aligned_cols=192 Identities=14% Similarity=0.037 Sum_probs=95.5
Q ss_pred CceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcC---CEEEEec
Q 021108 46 RKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEH 122 (317)
Q Consensus 46 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~---DIi~~df 122 (317)
..+.+-|+|++.-+...-.+.|+.--.+.- ...+.++++...+.+ ++ .+.+++-.+.+. .+.....
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~y--------p~~~eIIVVDd~StD--~T-~~i~~~~~~~~~~~~~i~vi~~ 106 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDY--------PGKLHVILVDDHSTD--GT-ADIARAAARAYGRGDRLTVVSG 106 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCC--------CCceEEEEEeCCCCC--cH-HHHHHHHHHhcCCCCcEEEecC
Confidence 344566777765433223333332222211 124677877776653 22 222222223343 3444432
Q ss_pred cccccchhHHHH---HHHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhcCCC-CceeEEEeeccceeccCCCccccc
Q 021108 123 IEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTK-PRVYVGCMKSGPVLARKGVKYYEP 197 (317)
Q Consensus 123 ~Dsy~NLt~Ktl---~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~ly~G~~~~~pv~r~~~~K~yvp 197 (317)
.+.-.+-.-|.. .+++.+.+ .++.+|++.+|+|+.+.++.|.+.+...... ..+..|.+.... .....+...|
T Consensus 107 ~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~ 184 (384)
T TIGR03469 107 QPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIP 184 (384)
T ss_pred CCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHH
Confidence 222222234533 34455443 3448999999999999998888887665322 233333221100 0000000001
Q ss_pred -----------ccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 021108 198 -----------EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 198 -----------~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~ 253 (317)
..+. .++. ....++.|++.++++++.+++---.. ......||+.++.-+...|
T Consensus 185 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~G~~~lirr~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 185 AFVFFFQKLYPFRWV-NDPR-RRTAAAAGGCILIRREALERIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHHHHHhcchhhh-cCCC-ccceeecceEEEEEHHHHHHcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 0000 0011 12234679999999999998743211 1122479999999997665
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.50 E-value=0.87 Score=39.44 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=79.0
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcC--CEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 163 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~--DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 163 (317)
.+.+++|...+.+ . ..+.+++-.+.|. ++........ .....|.- .+..+.+....+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~d--~-t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD--P-AIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc--h-HHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 4678888777652 2 2344444445555 3322221111 11223432 2344444567899999999999988888
Q ss_pred HHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChH
Q 021108 164 GMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDV 243 (317)
Q Consensus 164 ~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv 243 (317)
...+..... +. +|.+.+ .++.|++.++.+++.+.+.--.. ...+..||.
T Consensus 105 ~~l~~~~~~-~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLMD-PG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhhC-CC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 877765321 11 122111 03678999999999998753321 122236999
Q ss_pred HHHHHHhhCCCeE
Q 021108 244 SLGSWFIGLDVEH 256 (317)
Q Consensus 244 ~vG~~l~~l~v~~ 256 (317)
.++.-+...|.+.
T Consensus 154 ~l~~rl~~~G~~i 166 (196)
T cd02520 154 FLGKLIWRLGYRV 166 (196)
T ss_pred HHHHHHHHcCCeE
Confidence 9999987776554
No 15
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=95.33 E-value=0.54 Score=45.63 Aligned_cols=193 Identities=12% Similarity=0.028 Sum_probs=99.7
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCC--EEEEeccc
Q 021108 47 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIE 124 (317)
Q Consensus 47 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D--Ii~~df~D 124 (317)
.+.+-|+|++.-+...-.+.|+ +..++. ...+.++++...+++ ++ .+.+++=.+.|.+ +..+. ..
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D--~t-~~iv~~~~~~~p~~~i~~v~-~~ 106 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD--PA-LAVVRRLRADFPDADIDLVI-DA 106 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC--cH-HHHHHHHHHhCCCCceEEEE-CC
Confidence 3456667776544433345554 233332 234777777665542 22 2333333455666 32221 11
Q ss_pred cccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcC-CCCceeEEEeeccce--eccC-----CCcccc
Q 021108 125 GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPV--LARK-----GVKYYE 196 (317)
Q Consensus 125 sy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv--~r~~-----~~K~yv 196 (317)
.-.....|.-...+ +.+..+.+|++.+|+|+.+.++-|...+.... ++-.+..|.....+. .... ..-++.
T Consensus 107 ~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (373)
T TIGR03472 107 RRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL 185 (373)
T ss_pred CCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhh
Confidence 11222346555443 34456899999999999999999888877653 222222232211110 0000 001122
Q ss_pred cccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 197 PEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 197 p~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
|.... ... ..-+.+|.|+++++.+++.+.+---... ...-.||+.+|.-+...|.+.
T Consensus 186 ~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~~-~~~~~ED~~l~~~i~~~G~~v 242 (373)
T TIGR03472 186 PSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAAL-AHHLADDYWLGELVRALGLRV 242 (373)
T ss_pred HHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHHh-cccchHHHHHHHHHHHcCCeE
Confidence 21000 000 0113458899999999999987533211 122259999999997776543
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.45 E-value=1.4 Score=38.38 Aligned_cols=156 Identities=15% Similarity=0.009 Sum_probs=79.6
Q ss_pred EEEEEEeecCCCCCchhHHHHHHHHhhc--CCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 87 IIIRFVIGHSATSGGILDKAIDAEEKMH--GDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 87 v~~~FvlG~~~~~~~~~~~~L~~E~~~~--~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
+.++.|.+.+.+ . ..+.+. +...+ ..+....... -.|.. |. .++.+..+....+|++.+|+|..+.++-|.
T Consensus 29 ~eiivvdd~s~d--~-t~~~~~-~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD--G-TVQILE-FAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc--C-hHHHHH-HHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 677777665542 2 233343 22223 3354444433 22322 22 234555555678999999999999988888
Q ss_pred HHHhhcC-CCCceeEEEeeccce---e-ccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCC
Q 021108 165 MTLAAHR-TKPRVYVGCMKSGPV---L-ARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYA 239 (317)
Q Consensus 165 ~~L~~~~-~~~~ly~G~~~~~pv---~-r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~ 239 (317)
+.+.... +....+.|.....+. . +...-.+..............+|..+.|+++++++++..++---... ....
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-cccc
Confidence 8887543 233445554321110 0 00000000000000000122345567899999999999987543222 2234
Q ss_pred CChHHHHHHHh
Q 021108 240 NEDVSLGSWFI 250 (317)
Q Consensus 240 ~EDv~vG~~l~ 250 (317)
.||..++.-+.
T Consensus 181 ~eD~~~~~~~~ 191 (229)
T cd04192 181 SGDDELLLAKV 191 (229)
T ss_pred cCCHHHHHHHH
Confidence 57777765543
No 17
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.23 E-value=3.7 Score=38.18 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=62.6
Q ss_pred HHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCc-eeEEEee--cc-ce-eccC------------CCccccccc
Q 021108 137 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR-VYVGCMK--SG-PV-LARK------------GVKYYEPEY 199 (317)
Q Consensus 137 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~-ly~G~~~--~~-pv-~r~~------------~~K~yvp~~ 199 (317)
...+.+....+|++..|+|+.+...-|..++......+. +..|.+. .. .. .... ...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 334434456899999999999998777777765432222 2222221 00 00 0000 011111100
Q ss_pred cc--ccC-CCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 021108 200 WK--FGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 200 ~~--~~~-~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~ 253 (317)
.. ... +....-+++.|+++++++++...+.--...+..+..||+-+..=+...|
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G 211 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCG 211 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcC
Confidence 00 000 1123345678999999999999886443444444579988876554443
No 18
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.17 E-value=4.9 Score=35.78 Aligned_cols=190 Identities=13% Similarity=0.032 Sum_probs=90.9
Q ss_pred CCCceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecc
Q 021108 44 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 123 (317)
Q Consensus 44 ~~~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~ 123 (317)
....+.+-|+|++.-....-...|+.-..+.. ....+.++++...+. +. ..+.+.+..+. .+......
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~--d~-t~~~~~~~~~~--~v~~i~~~ 92 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST--DG-TAEIAREYADK--GVKLLRFP 92 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC--cc-HHHHHHHHhhC--cEEEEEcC
Confidence 33445567777775444344556666555432 122356666655443 22 22333222222 23333222
Q ss_pred ccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcC-CCCceeEEEeec-cceeccCCCc--cccccc
Q 021108 124 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKS-GPVLARKGVK--YYEPEY 199 (317)
Q Consensus 124 Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~-~pv~r~~~~K--~yvp~~ 199 (317)
.|. -|. ..+....+....+|++..|+|+++..+-|.+.+.... +.-.+..|.... .+........ |.....
T Consensus 93 ---~~~-g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (251)
T cd06439 93 ---ERR-GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENW 167 (251)
T ss_pred ---CCC-ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHH
Confidence 222 132 2344444444569999999999999887887777664 222344444321 1100000000 100000
Q ss_pred ccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 200 WKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 200 ~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
...-......+..+.|+++.+.+++.. ........||..++.-+...|...
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~ 218 (251)
T cd06439 168 LKRAESRLGSTVGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRV 218 (251)
T ss_pred HHHHHHhcCCeeeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeE
Confidence 000000011233466777777777665 111122369999998887776543
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.91 E-value=4.3 Score=32.99 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=54.8
Q ss_pred cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccCcCcCCCeeeecH
Q 021108 143 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSK 222 (317)
Q Consensus 143 ~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~ 222 (317)
..+.+|++..|||..+..+.|...+......+..- -+. +. +.|++.++++
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~--~~~----------------------~~------~~~~~~~~~~ 121 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVG--IVG----------------------PK------VSGAFLLVRR 121 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCce--EEE----------------------cc------CceeeEeeeH
Confidence 34789999999999999988888776432222111 010 00 5788999999
Q ss_pred HHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEe
Q 021108 223 DLATYISINQHLLHKYANEDVSLGSWFIGLDVEHV 257 (317)
Q Consensus 223 ~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~~ 257 (317)
++++.+..-...... ..||..+..-+...|.+..
T Consensus 122 ~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~ 155 (166)
T cd04186 122 EVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVL 155 (166)
T ss_pred HHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEE
Confidence 988876432222211 5699998887766665543
No 20
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=92.55 E-value=0.18 Score=46.49 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCCeeeecHHHHHHHHHhccc----cCCCCCChHHHHHHHhhCCCeEecCCCcccCC
Q 021108 214 TGQLYALSKDLATYISINQHL----LHKYANEDVSLGSWFIGLDVEHVDDRRLCCGT 266 (317)
Q Consensus 214 ~G~gYvlS~~l~~~l~~~~~~----~~~~~~EDv~vG~~l~~l~v~~~~~~~F~~~~ 266 (317)
+|+|++||..+|+.|.+.... .+.+.--|--+..|++.+|+.....++|+...
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 899999999999999986322 23344578899999999998888778887643
No 21
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.27 E-value=6.6 Score=33.58 Aligned_cols=171 Identities=13% Similarity=0.034 Sum_probs=87.8
Q ss_pred HHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcC-CEEEEeccccccchhHHHHHHHHHHHhc
Q 021108 65 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSM 143 (317)
Q Consensus 65 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~-DIi~~df~Dsy~NLt~Ktl~~l~w~~~~ 143 (317)
+.|.++..+... .....+.++++-..+.+ + ..+.+++-...++ .+.......+ .... ..+......
T Consensus 11 ~~l~~~l~sl~~-----q~~~~~eiiVvddgS~d--~-t~~~~~~~~~~~~~~~~~~~~~~~-~G~~----~~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILA-----QTYKNDELIISDDGSTD--G-TVEIIKEYIDKDPFIIILIRNGKN-LGVA----RNFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHh-----CcCCCeEEEEEeCCCCC--C-cHHHHHHHHhcCCceEEEEeCCCC-ccHH----HHHHHHHHh
Confidence 556666666532 01235677777665542 2 2333444344443 2333332222 1222 222333445
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhh-cC-CCCceeEEEee----ccceeccC-C-CcccccccccccCCCCccCcCcCC
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAA-HR-TKPRVYVGCMK----SGPVLARK-G-VKYYEPEYWKFGEIGNKYFRHATG 215 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~-~~-~~~~ly~G~~~----~~pv~r~~-~-~K~yvp~~~~~~~~~~~yP~Y~~G 215 (317)
.+.+|++..|+|..+.++.|...+.. .. +...++.|... ........ . ...+.+.... .......++.|
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTG 154 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCC
Confidence 68999999999999998888888876 22 33334444332 11111100 0 0000000000 01122345679
Q ss_pred CeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 021108 216 QLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 216 ~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~ 253 (317)
++.++.++++.++..-.... ...||.++...+...+
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFG 190 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcC
Confidence 99999999999876532222 3578988877775543
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.18 E-value=4.3 Score=32.71 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
..+.++++-..+. +...+.+++-.+....+......+.. ++..-.-.+++. ...+|++.+|||.++..+.|.
T Consensus 26 ~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~~~~~l~ 97 (169)
T PF00535_consen 26 PDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKH----AKGEYILFLDDDDIISPDWLE 97 (169)
T ss_dssp CEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH------SSEEEEEETTEEE-TTHHH
T ss_pred CCEEEEEeccccc---cccccccccccccccccccccccccc-cccccccccccc----cceeEEEEeCCCceEcHHHHH
Confidence 3456666666553 23344444443324445555544332 222222223333 345599999999999988776
Q ss_pred HHHhhcCC-CCceeEEEee--cc---ceeccCCC-ccccc-ccccccCCCCccCcCcCCCeeeecHHHHHHH
Q 021108 165 MTLAAHRT-KPRVYVGCMK--SG---PVLARKGV-KYYEP-EYWKFGEIGNKYFRHATGQLYALSKDLATYI 228 (317)
Q Consensus 165 ~~L~~~~~-~~~ly~G~~~--~~---pv~r~~~~-K~yvp-~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l 228 (317)
.+++.... ...+.+|... .. ...+.... .+... ..... .....--+++.|++.++++++.+++
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 98 ELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFN-NIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHH-TTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHH-hhhcCCcccccccEEEEEHHHHHhh
Confidence 66665543 3345556542 11 11110000 01111 00000 0112333467899999999998865
No 23
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=92.07 E-value=0.31 Score=42.43 Aligned_cols=122 Identities=16% Similarity=0.077 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCC-CCceeEEEeeccceeccCCC---ccc---cccccccc
Q 021108 131 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKSGPVLARKGV---KYY---EPEYWKFG 203 (317)
Q Consensus 131 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~ly~G~~~~~pv~r~~~~---K~y---vp~~~~~~ 203 (317)
.|.-.....+....+.++++..|+|+.|+++-|.+.+..... .-.+..|.....|. +.-++ .-+ .+.-+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~-~~~~~~l~~~~~~~~~~~~~-- 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPA-RGFWSRLEAAFFNFLPGVLQ-- 93 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCC-cCHHHHHHHHHHhHHHHHHH--
Confidence 566555554433368899999999999999999888876642 33333332221111 00000 001 111110
Q ss_pred CCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEec
Q 021108 204 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVD 258 (317)
Q Consensus 204 ~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~~~ 258 (317)
.-.-.+++.|+.+++.+++++.+--- ..+...--||..+|..+...|.+..-
T Consensus 94 --a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~ 145 (175)
T PF13506_consen 94 --ALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVL 145 (175)
T ss_pred --HhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEE
Confidence 01235779999999999999887311 11222347999999999888877653
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=91.85 E-value=8.4 Score=33.82 Aligned_cols=161 Identities=12% Similarity=-0.058 Sum_probs=82.0
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
..+.++.+.+.+.+ .....++...+.+..+....-.. .+.. .++..+.+..+.+|++..|+|..+.+.-|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~~--~~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNPK--RIQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCCC--CCch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 45667777666542 23344444444443343333221 1111 345555554578999999999999988888
Q ss_pred HHHhhcCC-CCceeEEEeec---cceec----cCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccC
Q 021108 165 MTLAAHRT-KPRVYVGCMKS---GPVLA----RKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 236 (317)
Q Consensus 165 ~~L~~~~~-~~~ly~G~~~~---~pv~r----~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~ 236 (317)
..+..... ...+..|.... .+..+ ...+.+....... .......-.++.|++.++++++..++.-....
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAY-RGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccc-cccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 87765432 22334344321 11100 0000000000000 00001101145778889999998877432222
Q ss_pred CCCCChHHHHHHHhhCCCeEe
Q 021108 237 KYANEDVSLGSWFIGLDVEHV 257 (317)
Q Consensus 237 ~~~~EDv~vG~~l~~l~v~~~ 257 (317)
....||..++.-+...|.+..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred cCccchhHHHHHHHHcCcEEE
Confidence 234699999887776665544
No 25
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.80 E-value=14 Score=36.15 Aligned_cols=187 Identities=11% Similarity=0.038 Sum_probs=96.9
Q ss_pred CceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccc
Q 021108 46 RKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 125 (317)
Q Consensus 46 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Ds 125 (317)
+.+.+-|+|++.-+. +.|++|-.+-.. . ......++.+...+. +...+.+++..+++..+...+..
T Consensus 52 ~~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~-- 117 (420)
T PRK11204 52 EYPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLA-- 117 (420)
T ss_pred CCCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcC--
Confidence 345677777775443 345555544321 0 112345554444333 23344555555666666555432
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCccccccc--cc--
Q 021108 126 YLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEY--WK-- 201 (317)
Q Consensus 126 y~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~--~~-- 201 (317)
.|.. |. .+++.+.+..+.+|++..|+|+.+..+.|.+.++.....+.+ |.+.+.+..++.. .+..... .+
T Consensus 118 -~n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~ 191 (420)
T PRK11204 118 -ENQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSS 191 (420)
T ss_pred -CCCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHH
Confidence 3332 43 344555555688999999999999999888887765322221 2222222111111 0100000 00
Q ss_pred ------ccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 202 ------FGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 202 ------~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
........+...+|++.++.++++..+.--.. ..-.||+.++.-+...|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~---~~~~ED~~l~~rl~~~G~~ 248 (420)
T PRK11204 192 IIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWST---DMITEDIDISWKLQLRGWD 248 (420)
T ss_pred hhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCCC---CcccchHHHHHHHHHcCCe
Confidence 00000011223578889999999887643211 2236999999988766544
No 26
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=91.23 E-value=2.7 Score=34.35 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=66.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCC-EEEEeccccccchh
Q 021108 52 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELS 130 (317)
Q Consensus 52 i~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D-Ii~~df~Dsy~NLt 130 (317)
+.|.+-+...+||+.+++..... ++.+.|+-|-.... .....+......+.. ....+..-+.-.-.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 34668888899999999855443 34566777665421 111112111110000 00001111112223
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccC
Q 021108 131 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYF 210 (317)
Q Consensus 131 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP 210 (317)
+-.+..|+-+.+ .+.++.+-..||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 344445555554 366888889999887766
Q ss_pred cCcCCCeeeecHHHHHHHHHhccc
Q 021108 211 RHATGQLYALSKDLATYISINQHL 234 (317)
Q Consensus 211 ~Y~~G~gYvlS~~l~~~l~~~~~~ 234 (317)
+.+||++|+..|++|......
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 347899999999999987554
No 27
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.16 E-value=8.6 Score=33.53 Aligned_cols=118 Identities=12% Similarity=-0.006 Sum_probs=65.7
Q ss_pred HHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCc--eeEEEee--c-cce---eccC--CCcccccc-cccccCCC
Q 021108 138 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMK--S-GPV---LARK--GVKYYEPE-YWKFGEIG 206 (317)
Q Consensus 138 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~--~-~pv---~r~~--~~K~yvp~-~~~~~~~~ 206 (317)
..+.+..+.+|++..|+|+++.++.|...+......+. +..|... . ... .+.. ....+... ... ..
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 153 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---RD 153 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---Hh
Confidence 34434347899999999999999888888876543222 2222211 1 110 0000 00001000 000 00
Q ss_pred CccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe--EecCCC
Q 021108 207 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE--HVDDRR 261 (317)
Q Consensus 207 ~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~--~~~~~~ 261 (317)
.....++.|++.++++++++.+.--. ..+..||..++.-+...|.+ .++...
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~ 207 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPL 207 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcc
Confidence 11245678999999999998875322 22347999999888766544 444443
No 28
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.93 E-value=7.2 Score=31.34 Aligned_cols=152 Identities=9% Similarity=0.042 Sum_probs=73.7
Q ss_pred HHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCC-EEEEeccccccchhHHHHHHHHHHHhc
Q 021108 65 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSM 143 (317)
Q Consensus 65 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D-Ii~~df~Dsy~NLt~Ktl~~l~w~~~~ 143 (317)
+.|++|-.+.... ....+.++.+-..+.+ . ....+.++...+.- ++..... .|.. ....+.++.+.
T Consensus 10 ~~l~~~l~sl~~q-----~~~~~~iivvdd~s~d--~-t~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~n~~~~~ 76 (180)
T cd06423 10 AVIERTIESLLAL-----DYPKLEVIVVDDGSTD--D-TLEILEELAALYIRRVLVVRDK---ENGG--KAGALNAGLRH 76 (180)
T ss_pred HHHHHHHHHHHhC-----CCCceEEEEEeCCCcc--c-hHHHHHHHhccccceEEEEEec---ccCC--chHHHHHHHHh
Confidence 5666666554320 1134566666555542 2 23344444333322 2222221 2221 22445555555
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhhcCCCC--ceeEEEeec---c-ceecc-CCCcccccccccc-cCCCCccCcCcCC
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKP--RVYVGCMKS---G-PVLAR-KGVKYYEPEYWKF-GEIGNKYFRHATG 215 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~--~ly~G~~~~---~-pv~r~-~~~K~yvp~~~~~-~~~~~~yP~Y~~G 215 (317)
.+.+|++..|+|..+....|..++....... .+..|.... . ..... ...++........ .......+..+.|
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSG 156 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCc
Confidence 5899999999999999887777745443222 233343321 1 11100 0001111100000 0001234456789
Q ss_pred CeeeecHHHHHHHH
Q 021108 216 QLYALSKDLATYIS 229 (317)
Q Consensus 216 ~gYvlS~~l~~~l~ 229 (317)
.+++++++++..+.
T Consensus 157 ~~~~~~~~~~~~~g 170 (180)
T cd06423 157 AFGAFRREALREVG 170 (180)
T ss_pred hHHHHHHHHHHHhC
Confidence 99999999988765
No 29
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.83 E-value=8.3 Score=32.46 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=72.2
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
..+.++.+-+.+.+ ++ ...+.....++..+..+.... |.. | -.+++.+.+....+|++.+|+|.......|.
T Consensus 28 ~~~eiivvdd~s~d--~t-~~~~~~~~~~~~~i~~i~~~~---n~G-~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGSTD--RT-LEILRELAARDPRVKVIRLSR---NFG-Q-QAALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCCc--cH-HHHHHHHHhhCCCEEEEEecC---CCC-c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 34667777665542 22 233444444555555544432 321 2 2333444444466999999999999988787
Q ss_pred HHHhhcCCCCceeEEEeec--cceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHh
Q 021108 165 MTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISIN 231 (317)
Q Consensus 165 ~~L~~~~~~~~ly~G~~~~--~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~ 231 (317)
..++...+...+..|.... .+..+.-.++.+...... .....-+...|+.+++++++++.+..-
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINK---LSGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHH---HcCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 7777654445566565421 110000000111000000 011223456788899999999988753
No 30
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.81 E-value=12 Score=31.95 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=57.8
Q ss_pred HHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcC--CCCceeEEEeec--cceeccCCCcccccc---cc-cccCCCCc
Q 021108 137 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMKS--GPVLARKGVKYYEPE---YW-KFGEIGNK 208 (317)
Q Consensus 137 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~~--~pv~r~~~~K~yvp~---~~-~~~~~~~~ 208 (317)
+..+....+.+|++..|+|.++.++.|...+.... +.-.++.|.+.. ... +....+. .|. .+ .+ ....
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~--~~~~ 147 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDG-NDIGKRR-LPTSHDDILKF--ARRR 147 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCC-Ceecccc-CCCCHHHHHHH--hccC
Confidence 44444445789999999999999988888777653 223344444321 100 0000000 110 00 00 0001
Q ss_pred cCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 209 YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 209 yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
- + ..|++.++.+.++..+..-. .....||..+...+...|.
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~ 188 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGA 188 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCC
Confidence 1 1 24566777777766543211 1245799999888865544
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.56 E-value=12 Score=31.92 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcC-CCCceeEEEeeccceeccCCCcccccccccccCCCCccCcC
Q 021108 134 KTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRH 212 (317)
Q Consensus 134 l~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y 212 (317)
-.+++++. ..+.+|++..|+|..+..+.|...+.... +.-.+..|... . ...
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~---------------~~~----- 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------D---------------PDG----- 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------c---------------CCC-----
Confidence 34556665 45789999999999999888777776553 21122222110 0 000
Q ss_pred cCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 213 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 213 ~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
.++|.++.++++..+.-..... ....||+.++.-+...|..
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~~ 162 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGPG 162 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCCc
Confidence 3456889999988774221111 2346999998888666543
No 32
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=89.35 E-value=8.5 Score=35.44 Aligned_cols=194 Identities=12% Similarity=0.015 Sum_probs=96.5
Q ss_pred EEEECCCCCHH-HHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHH----HhhcCCEEEEeccccc
Q 021108 52 IGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAE----EKMHGDFLRLEHIEGY 126 (317)
Q Consensus 52 i~V~S~p~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E----~~~~~DIi~~df~Dsy 126 (317)
|+|++.-...+ -.+.++.+...... ..-...+.+ |++..+.+ +........+ .+++..-+.+-+..--
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI-~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~ 75 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDF-FILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYRRRR 75 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEE-EEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEEEcC
Confidence 56777666655 56677776653210 000124566 88865542 2222111111 1223332333333333
Q ss_pred cchhHHHHHHHHHHHhc-CCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCC---cccc-ccccc
Q 021108 127 LELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KYYE-PEYWK 201 (317)
Q Consensus 127 ~NLt~Ktl~~l~w~~~~-~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~yv-p~~~~ 201 (317)
.|.-.|+-..-...... .+.+|++-.|.|+.+.++.|.+.+......+. +|-+.......+..+ ++.- ....+
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~ 153 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLY 153 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHH
Confidence 34445655544444432 57899999999999999999998876532222 233221100011111 1100 00000
Q ss_pred c---cCCC----CccCcCcCCCeeeecHHHHHHHHHhc-----ccc-CCCCCChHHHHHHHhhCCCe
Q 021108 202 F---GEIG----NKYFRHATGQLYALSKDLATYISINQ-----HLL-HKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 202 ~---~~~~----~~yP~Y~~G~gYvlS~~l~~~l~~~~-----~~~-~~~~~EDv~vG~~l~~l~v~ 255 (317)
. . .+ ...-.+|.|...++.++++..+.... .-. ...-.||..+|+.+...|-+
T Consensus 154 ~~~~~-~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 154 GPVFG-RGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHH-HHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 0 0 00 00113467999999999987753211 011 11236999999999776654
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=89.25 E-value=25 Score=34.95 Aligned_cols=187 Identities=12% Similarity=0.085 Sum_probs=97.2
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccc
Q 021108 47 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 126 (317)
Q Consensus 47 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy 126 (317)
.+.+-|+|++.-+... |++|-.+... . ...+..++.+...+. ++ ..+.+.+..+++..+......
T Consensus 74 ~p~vsViIP~yNE~~~----i~~~l~sll~----q-~yp~~eIivVdDgs~--D~-t~~~~~~~~~~~~~v~vv~~~--- 138 (444)
T PRK14583 74 HPLVSILVPCFNEGLN----ARETIHAALA----Q-TYTNIEVIAINDGSS--DD-TAQVLDALLAEDPRLRVIHLA--- 138 (444)
T ss_pred CCcEEEEEEeCCCHHH----HHHHHHHHHc----C-CCCCeEEEEEECCCC--cc-HHHHHHHHHHhCCCEEEEEeC---
Confidence 3556777777644433 4444433221 0 123466666655543 22 334455555566655444322
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCC---Cccccccccc-c
Q 021108 127 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKG---VKYYEPEYWK-F 202 (317)
Q Consensus 127 ~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~---~K~yvp~~~~-~ 202 (317)
.|.. |. .+++.+....+.+|++..|.|+.+..+.|...+......++ .|.+.+.|..++.. .+....+... +
T Consensus 139 ~n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~ 214 (444)
T PRK14583 139 HNQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSII 214 (444)
T ss_pred CCCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHH
Confidence 2222 43 34555555568899999999999999988887765422222 13333222222211 1111000000 0
Q ss_pred c--C-CCCc--cCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 203 G--E-IGNK--YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 203 ~--~-~~~~--yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
+ . .... -+..++|++.++.+++++.+.-.... .-.||.-+|.-+...|-+
T Consensus 215 ~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~---~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 215 GLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSPD---MITEDIDISWKLQLKHWS 269 (444)
T ss_pred HHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCCC---cccccHHHHHHHHHcCCe
Confidence 0 0 0000 11235788899999998877432222 236999999999766654
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=88.13 E-value=17 Score=31.83 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=80.7
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcC-CEEEEeccccccchhHHHHHHHHHHHhc--CCceEEEEecCceeeeHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSM--WDAEFYIKVDDDVHVNLAT 162 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~-DIi~~df~Dsy~NLt~Ktl~~l~w~~~~--~~~~fvlK~DDD~fVn~~~ 162 (317)
.+.++++-+.+. +++..+.+++=.++++ ++...... .|...| ..++.++.+. .+.+|++..|+|+.+.++.
T Consensus 28 ~~eiiVvdd~s~--D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~-~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~ 101 (236)
T cd06435 28 NFEVIVIDNNTK--DEALWKPVEAHCAQLGERFRFFHVE---PLPGAK-AGALNYALERTAPDAEIIAVIDADYQVEPDW 101 (236)
T ss_pred CcEEEEEeCCCC--chhHHHHHHHHHHHhCCcEEEEEcC---CCCCCc-hHHHHHHHHhcCCCCCEEEEEcCCCCcCHHH
Confidence 466777766554 2333222322122333 34333322 233333 2345666553 3479999999999999999
Q ss_pred HHHHHhhcCCCCceeEEEeeccceeccCCCccccc------cccc-cc--CCCCccCcCcCCCeeeecHHHHHHHHHhcc
Q 021108 163 LGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP------EYWK-FG--EIGNKYFRHATGQLYALSKDLATYISINQH 233 (317)
Q Consensus 163 L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp------~~~~-~~--~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~ 233 (317)
|...+..... +. +|.+.+....++....++.. ..++ .. .....--.++.|++.+++++++..+.--..
T Consensus 102 l~~l~~~~~~-~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~ 178 (236)
T cd06435 102 LKRLVPIFDD-PR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDE 178 (236)
T ss_pred HHHHHHHhcC-CC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCC
Confidence 9988876532 22 12221100001110111100 0000 00 000000124678889999999998753222
Q ss_pred ccCCCCCChHHHHHHHhhCCCeE
Q 021108 234 LLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 234 ~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
.+..||+-++.=+...|.+.
T Consensus 179 ---~~~~eD~dl~~r~~~~G~~~ 198 (236)
T cd06435 179 ---WCITEDSELGLRMHEAGYIG 198 (236)
T ss_pred ---ccccchHHHHHHHHHCCcEE
Confidence 23479999998887766554
No 35
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.53 E-value=16 Score=30.62 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhc--CCCCceeEEEee--ccceeccCCCcccccccccccCCCCccC
Q 021108 135 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH--RTKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYF 210 (317)
Q Consensus 135 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~ly~G~~~--~~pv~r~~~~K~yvp~~~~~~~~~~~yP 210 (317)
.++..+.+..+.+|++..|+|.++..+.+...+... .+...+..|... ...... ...+. ...... ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~-~~~~~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRR-PPPFLD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCC-Ccchhh---hHHhhc
Confidence 344555555578999999999999999998887433 233445556542 111000 00010 000000 112334
Q ss_pred cCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 211 RHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 211 ~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
.+..|++.++++++.+.+..-.... ...||..+..-+...|...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCce
Confidence 4567888999999998875322222 2358888877776665544
No 36
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=86.72 E-value=15 Score=31.05 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=50.8
Q ss_pred HHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCccccc----cc----c--cccC
Q 021108 136 YFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EY----W--KFGE 204 (317)
Q Consensus 136 ~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp----~~----~--~~~~ 204 (317)
+++++.. ..+.+|++.+|.|+.+.++.|..++........+..|..... ++...|.-. .. + ..+.
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRPLGR 146 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 246899999999999999888888777654445666654311 111111100 00 0 0000
Q ss_pred CCCccCcCcCCCeeeecHHHHHH
Q 021108 205 IGNKYFRHATGQLYALSKDLATY 227 (317)
Q Consensus 205 ~~~~yP~Y~~G~gYvlS~~l~~~ 227 (317)
..-.-+.++.|+++++++++++.
T Consensus 147 ~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 147 SNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHcCCCeeecCchhhhHHHHHHh
Confidence 00122345789999999999988
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.51 E-value=33 Score=33.28 Aligned_cols=190 Identities=11% Similarity=0.032 Sum_probs=105.0
Q ss_pred ceeEEEEEECCCCCH-HHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccc
Q 021108 47 KYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 125 (317)
Q Consensus 47 ~~~lli~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Ds 125 (317)
.+.+-|+|++--++. --.+.++..=... -....++.+...+. +..-+.+++-..+++..+.....
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~-- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP-- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--
Confidence 466777788865555 3334444333332 12356777776443 23445555555666534443311
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCce-eEEEee--ccc-----eeccCCCccccc
Q 021108 126 YLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK--SGP-----VLARKGVKYYEP 197 (317)
Q Consensus 126 y~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~--~~p-----v~r~~~~K~yvp 197 (317)
-.+ ...-..++.++....+.++|+..|.|+.+..+.|.+.+......+.. ..|... .++ ..+-..-.+..-
T Consensus 119 ~~~-~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (439)
T COG1215 119 EKK-NGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSA 197 (439)
T ss_pred ccc-CccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhh
Confidence 011 12224456676665569999999999999999999999876533322 333321 110 000000000000
Q ss_pred cc--ccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 198 EY--WKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 198 ~~--~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
.. .... .....+..+.|++.++.+++++.+... .+..--||.-+|..+...|.+
T Consensus 198 ~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~~---~~~~i~ED~~lt~~l~~~G~~ 253 (439)
T COG1215 198 FYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGGW---LEDTITEDADLTLRLHLRGYR 253 (439)
T ss_pred HHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCCC---CCCceeccHHHHHHHHHCCCe
Confidence 00 0000 112346779999999999999988722 122225999999999765544
No 38
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.26 E-value=18 Score=31.54 Aligned_cols=152 Identities=12% Similarity=0.089 Sum_probs=77.4
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 165 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 165 (317)
...+++|...+. +.....+ .+...+..+.... .+. . -|.- ++....+..+.+|++.+|+|+.+..+.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~-~---g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH-P---GKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC-C---ChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 345666665544 2223333 3345566655543 221 1 2332 223333345889999999999999999888
Q ss_pred HHhhcC-CCCceeEEEeeccceeccC-CCcc------cccc-------cccccCCCCccCcCcCCCeeeecHHHHHHHHH
Q 021108 166 TLAAHR-TKPRVYVGCMKSGPVLARK-GVKY------YEPE-------YWKFGEIGNKYFRHATGQLYALSKDLATYISI 230 (317)
Q Consensus 166 ~L~~~~-~~~~ly~G~~~~~pv~r~~-~~K~------yvp~-------~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~ 230 (317)
.+.... +.-....|.... .+. ...| +... ... .... -+.++|++.++.++++..+.-
T Consensus 98 l~~~~~~~~v~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~G~~~~~rr~~l~~~~~ 169 (235)
T cd06434 98 MLKPFEDPKVGGVGTNQRI----LRPRDSKWSFLAAEYLERRNEEIRAAMS---YDGG-VPCLSGRTAAYRTEILKDFLF 169 (235)
T ss_pred HHHhccCCCEeEEcCceEe----ecCcccHHHHHHHHHHHHHHHHHHHHHh---hCCC-EEEccCcHHHHHHHHHhhhhh
Confidence 887764 211222222211 000 0001 0000 000 0000 123567778888888876532
Q ss_pred hccc-------cCCCCCChHHHHHHHhhCCCe
Q 021108 231 NQHL-------LHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 231 ~~~~-------~~~~~~EDv~vG~~l~~l~v~ 255 (317)
.... .+....||.+++.-+...|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 170 LEEFTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred HHHhhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 2111 123456999999888766654
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=86.09 E-value=24 Score=31.35 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=64.9
Q ss_pred HHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCC-Cce-eEEE-eeccceeccCCCcccccc--ccc---cc-CCC
Q 021108 136 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK-PRV-YVGC-MKSGPVLARKGVKYYEPE--YWK---FG-EIG 206 (317)
Q Consensus 136 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~K~yvp~--~~~---~~-~~~ 206 (317)
++....+..+.+|++..|+|+.+.++.|.+.+...... ..+ ++|. +...........+.+... .+. .. ...
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555577999999999999999998888766422 232 2222 211000000000110000 000 00 001
Q ss_pred CccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 207 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 207 ~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
...+..++|++.++++++++.+.--.. ....||..++.-+...|.+.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~ 201 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRT 201 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceE
Confidence 123334688899999999988753222 12369999998886666543
No 40
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=85.38 E-value=2.9 Score=35.83 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=65.3
Q ss_pred EEEEecCceeeeHHHHHHHHhhcC-CCCceeEEEeeccceeccCCCccccccc-c-----cccCCCCccCcCcCCCeeee
Q 021108 148 FYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPVLARKGVKYYEPEY-W-----KFGEIGNKYFRHATGQLYAL 220 (317)
Q Consensus 148 fvlK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~K~yvp~~-~-----~~~~~~~~yP~Y~~G~gYvl 220 (317)
||+-+|+|+-+..+-|.+.+.... ++-.+..|.+...+. ...-.++..-+. . .........+.++.|++.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 688999999999998888877664 222233233221000 000001111100 0 00001234567789999999
Q ss_pred cHHHHHHHHHhccccCCCCCChHHHHHHHhhCC--CeEecCCCcccCC
Q 021108 221 SKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLCCGT 266 (317)
Q Consensus 221 S~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~--v~~~~~~~F~~~~ 266 (317)
++++++.+.--. -.....||..+|.-+...| +..+++...++..
T Consensus 80 r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~ 125 (193)
T PF13632_consen 80 RREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEA 125 (193)
T ss_pred eHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeC
Confidence 999999875322 1334469999998886555 4455555444443
No 41
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.98 E-value=23 Score=30.06 Aligned_cols=156 Identities=11% Similarity=0.062 Sum_probs=77.0
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 165 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 165 (317)
.+.++.+-+.+. ++.....+......+.-+.... .+.-.+. -.++..+.+....+|++..|+|..+..+.|..
T Consensus 31 ~~eiivvd~gs~--d~~~~~~~~~~~~~~~~~~~~~-~~~~~g~----~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~ 103 (202)
T cd04184 31 NWELCIADDAST--DPEVKRVLKKYAAQDPRIKVVF-REENGGI----SAATNSALELATGEFVALLDHDDELAPHALYE 103 (202)
T ss_pred CeEEEEEeCCCC--ChHHHHHHHHHHhcCCCEEEEE-cccCCCH----HHHHHHHHHhhcCCEEEEECCCCcCChHHHHH
Confidence 456666655554 2333333333333333333322 2221222 22344444445679999999999999988888
Q ss_pred HHhhcC--CCCceeEEEee--c-cceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCC
Q 021108 166 TLAAHR--TKPRVYVGCMK--S-GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYAN 240 (317)
Q Consensus 166 ~L~~~~--~~~~ly~G~~~--~-~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~ 240 (317)
.++... +...+..|... . ...... .++.+. +. ....+..-+.|++-+++++++..+.--.. .....
T Consensus 104 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~iggf~~--~~~~~ 174 (202)
T cd04184 104 VVKALNEHPDADLIYSDEDKIDEGGKRSE---PFFKPD-WS---PDLLLSQNYIGHLLVYRRSLVRQVGGFRE--GFEGA 174 (202)
T ss_pred HHHHHHhCCCCCEEEccHHhccCCCCEec---cccCCC-CC---HHHhhhcCCccceEeEEHHHHHHhCCCCc--Ccccc
Confidence 887652 22233333221 0 010000 111111 10 00011111345556788888877652211 12346
Q ss_pred ChHHHHHHHhhCCCeEe
Q 021108 241 EDVSLGSWFIGLDVEHV 257 (317)
Q Consensus 241 EDv~vG~~l~~l~v~~~ 257 (317)
||.-+++-+...|.+..
T Consensus 175 eD~~l~~rl~~~g~~~~ 191 (202)
T cd04184 175 QDYDLVLRVSEHTDRIA 191 (202)
T ss_pred hhHHHHHHHHhccceEE
Confidence 99988888876665544
No 42
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=84.69 E-value=27 Score=34.72 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=94.5
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccccc
Q 021108 48 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYL 127 (317)
Q Consensus 48 ~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~ 127 (317)
+.+-|+|++--+...-++.|+.--.+.- ....+.++.+-+.+. |++ .+.+++-.+.+..+... ..+.-.
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~y-------p~~~~eIiVVDd~St--D~T-~~il~~~~~~~~~v~v~-~~~~~~ 117 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQTY-------PIELIDIILANNQST--DDS-FQVFCRAQNEFPGLSLR-YMNSDQ 117 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCC-------CCCCeEEEEEECCCC--hhH-HHHHHHHHHhCCCeEEE-EeCCCC
Confidence 4456666665433334445544332221 123355555554443 222 23333333445544222 122211
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCc--eeEEEeeccceeccCCC---cccccccccc
Q 021108 128 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMKSGPVLARKGV---KYYEPEYWKF 202 (317)
Q Consensus 128 NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~~~pv~r~~~~---K~yvp~~~~~ 202 (317)
-| -.++.++.+..+.+|++..|+|..+..+.|.+.+......+. ...|.+...+....... .+......++
T Consensus 118 ---Gk-a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (439)
T TIGR03111 118 ---GK-AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYF 193 (439)
T ss_pred ---CH-HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHH
Confidence 23 234566666567899999999999999999888876532222 22344422110000000 0111110000
Q ss_pred cC-----------CCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhh-CC--CeEecCCCccc
Q 021108 203 GE-----------IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIG-LD--VEHVDDRRLCC 264 (317)
Q Consensus 203 ~~-----------~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~-l~--v~~~~~~~F~~ 264 (317)
.+ ....-+..++|++.++.++++.++.--.. ..-.||..++.-+.. .+ +....+..+.+
T Consensus 194 ~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~---~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 194 EYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS---ETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred HHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC---CCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 00 00012223678888899988876532111 123799999876532 23 33334444444
No 43
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=81.45 E-value=36 Score=29.82 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=57.3
Q ss_pred HHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccc-----cccccc-----c-CC
Q 021108 137 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE-----PEYWKF-----G-EI 205 (317)
Q Consensus 137 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yv-----p~~~~~-----~-~~ 205 (317)
+....+..+.+|++.+|.|+.+.++.|...+.... .+. +|.+.+.....+....|.. +....+ . +.
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 44555545889999999999999998888554332 222 1222111000111111110 000000 0 00
Q ss_pred CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 206 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 206 ~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
...+. .+.|++-++.++++..+.--.. ....||+.++.-+...|.+
T Consensus 156 ~~~~~-~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~ 201 (232)
T cd06437 156 TGLFF-NFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWK 201 (232)
T ss_pred cCCeE-EeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCe
Confidence 11111 2356666778888777632111 2247999999888766644
No 44
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=80.55 E-value=48 Score=30.63 Aligned_cols=165 Identities=11% Similarity=0.010 Sum_probs=90.8
Q ss_pred cCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCE-E-EEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHH
Q 021108 84 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-L-RLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 161 (317)
Q Consensus 84 ~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DI-i-~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 161 (317)
...+.++++-+.+. ......|.+-.+.++-+ + ..+......+.+. +..-+.+....+|++..|.|+++.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45677777776654 23445666666666655 2 2222222223322 22333344588999999999999999
Q ss_pred HHHHHHh---hcCC-CCceeEEEe-e-ccc----eeccCCCcc--cccccccccCCCCccC-cCcCCCeeeecHHHHHHH
Q 021108 162 TLGMTLA---AHRT-KPRVYVGCM-K-SGP----VLARKGVKY--YEPEYWKFGEIGNKYF-RHATGQLYALSKDLATYI 228 (317)
Q Consensus 162 ~L~~~L~---~~~~-~~~ly~G~~-~-~~p----v~r~~~~K~--yvp~~~~~~~~~~~yP-~Y~~G~gYvlS~~l~~~l 228 (317)
.|...+. .... ...++++.. . ..+ ........| ..-+... ....+.+. ....|++.+++++.-.++
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999888 4432 223333332 1 111 000000000 0000000 00011111 223569999999998888
Q ss_pred HHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 229 SINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 229 ~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
.---.....+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6555555566789999998888777654
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.96 E-value=17 Score=34.01 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=75.8
Q ss_pred cCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCC-ceeEEEe-e--ccc---e
Q 021108 114 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCM-K--SGP---V 186 (317)
Q Consensus 114 ~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~ly~G~~-~--~~p---v 186 (317)
+.++..+...++.-- ..=.-.+++.+.... .+|++-.++|+.+..+.|.+.++.....+ ....|.. . ..+ .
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 677776655443320 000113555655421 22999999999999999999988765433 3333432 1 111 1
Q ss_pred eccC-----CCccc-cccccccc--CCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 187 LARK-----GVKYY-EPEYWKFG--EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 187 ~r~~-----~~K~y-vp~~~~~~--~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
.+.. ...|. .+...... .+....-++++|++.++++++++++.--.. --.+..||+-++.=+..+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAGY 207 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcCC
Confidence 1110 01121 11110000 001112225789999999999999876322 22446899999998877774
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=77.75 E-value=39 Score=28.01 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=58.4
Q ss_pred HHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccCcCcCCC
Q 021108 137 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQ 216 (317)
Q Consensus 137 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~ 216 (317)
+..+.+....+|++..|+|..+..+.|...++...+. ....|.... .... .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~------------~~~~--------~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVL------------LNEK--------LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceee------------cccc--------cceeEeccc
Confidence 3444444578999999999999988888877765322 222232110 0000 000234677
Q ss_pred eeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 217 LYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 217 gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
++++.+..+..+.--......+..||+.++.-+...|.
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~ 167 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGI 167 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCC
Confidence 88888888775443333333334799999988877773
No 47
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=77.59 E-value=61 Score=30.83 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=69.5
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCC-EEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 163 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D-Ii~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 163 (317)
..+.++++-..+.+ .+. +.+.+-.+.+++ ++......++. |.- ++.-..+..+.+|++-.|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D--~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD--NSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC--cHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 35778888877663 222 333333344444 44433333322 111 2222333347899999999999999999
Q ss_pred HHHHhhcCCCCceeEEEeec--cceeccCCCcccccc-cccccCCCCccCcCcCCCeeeecHHHHHHHHH
Q 021108 164 GMTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPE-YWKFGEIGNKYFRHATGQLYALSKDLATYISI 230 (317)
Q Consensus 164 ~~~L~~~~~~~~ly~G~~~~--~pv~r~~~~K~yvp~-~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~ 230 (317)
.++++......++..|.... .+..|.-.++.+--- ... .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~---~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT---TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH---cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88888764333444343321 222222112211100 001 12234444333 34899999999864
No 48
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=77.20 E-value=53 Score=29.24 Aligned_cols=155 Identities=13% Similarity=0.070 Sum_probs=76.9
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCC-EEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D-Ii~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
.+.++++-..+.+ . ..+.+.+-.++|++ .+..-... .|... -.++..+....+.+|++..|+|..+.++.|.
T Consensus 40 ~~eiivvDdgS~D--~-t~~i~~~~~~~~~~~~v~~~~~~--~n~G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~ 112 (243)
T PLN02726 40 DFEIIVVDDGSPD--G-TQDVVKQLQKVYGEDRILLRPRP--GKLGL--GTAYIHGLKHASGDFVVIMDADLSHHPKYLP 112 (243)
T ss_pred CeEEEEEeCCCCC--C-HHHHHHHHHHhcCCCcEEEEecC--CCCCH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHH
Confidence 5678888776653 2 23334444445553 22221111 22221 1233444444468999999999999998888
Q ss_pred HHHhhcC-CCCceeEEEee--ccc-----eeccCCCcc--cccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccc
Q 021108 165 MTLAAHR-TKPRVYVGCMK--SGP-----VLARKGVKY--YEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL 234 (317)
Q Consensus 165 ~~L~~~~-~~~~ly~G~~~--~~p-----v~r~~~~K~--yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~ 234 (317)
.++.... ....+..|... .+- ..|.-.++. +.-. ..+ .... +...|+..++++++++.+......
T Consensus 113 ~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~---~~~~-~d~~g~~~~~rr~~~~~i~~~~~~ 187 (243)
T PLN02726 113 SFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ-TLL---WPGV-SDLTGSFRLYKRSALEDLVSSVVS 187 (243)
T ss_pred HHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH-HHh---CCCC-CcCCCcccceeHHHHHHHHhhccC
Confidence 8776553 23455556532 110 001000000 0000 010 1111 235778889999999999753222
Q ss_pred cCCCCCChHHHHHHHhhCCC
Q 021108 235 LHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 235 ~~~~~~EDv~vG~~l~~l~v 254 (317)
..+ ..|+-+..-+...|.
T Consensus 188 -~~~-~~~~el~~~~~~~g~ 205 (243)
T PLN02726 188 -KGY-VFQMEIIVRASRKGY 205 (243)
T ss_pred -CCc-EEehHHHHHHHHcCC
Confidence 122 235555544444443
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=76.07 E-value=76 Score=33.80 Aligned_cols=133 Identities=16% Similarity=0.087 Sum_probs=70.3
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCce-eEEEee----ccceeccCCCccccccc--c
Q 021108 128 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK----SGPVLARKGVKYYEPEY--W 200 (317)
Q Consensus 128 NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~----~~pv~r~~~~K~yvp~~--~ 200 (317)
|.-.|.- .++.+.+..+.+|++..|.|+.+..+-|.+.+......+++ +++... ..+..++-......+.+ .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334533 34555555678999999999999998888877654222222 111110 11111110000001100 0
Q ss_pred ccc--CC--CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe--EecCCCccc
Q 021108 201 KFG--EI--GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE--HVDDRRLCC 264 (317)
Q Consensus 201 ~~~--~~--~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~--~~~~~~F~~ 264 (317)
++. .+ ...-.+++.|++.++.++++..+---.. ..-.||..+|.-+...|-+ ..++....+
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~g 357 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIAG 357 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccccc
Confidence 000 00 0001245679999999999987742211 1226999999999777654 344444433
No 50
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=71.08 E-value=70 Score=27.81 Aligned_cols=118 Identities=12% Similarity=-0.070 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCceEEEEecCceeeeHHHHHHHH---hhcCCCCce-eEEEe-ec-cceecc---CCCcccccccccccCC
Q 021108 135 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL---AAHRTKPRV-YVGCM-KS-GPVLAR---KGVKYYEPEYWKFGEI 205 (317)
Q Consensus 135 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L---~~~~~~~~l-y~G~~-~~-~pv~r~---~~~K~yvp~~~~~~~~ 205 (317)
.+++++.. .+++|++..|+|+.+.++.|...+ ........+ .+|.. .. ...... ....+........ ..
T Consensus 66 ~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 143 (237)
T cd02526 66 IGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEG-EE 143 (237)
T ss_pred HHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccc-cC
Confidence 35555443 268999999999999988888885 222222222 22332 11 100000 0000000000000 00
Q ss_pred CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 206 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 206 ~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
...-..++.|+|.+++++++..+.--.... .+..||+.+++-+...|.+
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCc
Confidence 011123456788899999988875322222 2346899999888766644
No 51
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=66.12 E-value=75 Score=26.28 Aligned_cols=133 Identities=9% Similarity=0.017 Sum_probs=69.8
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 165 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~ 165 (317)
...++.+...+.+ .....+.....++..+..+....... .-.++....++...+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 4556666555442 23444554455566654444443322 113334444444559999999999999998888
Q ss_pred HHhh-cCCCCceeEEEee--cc----ceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHH
Q 021108 166 TLAA-HRTKPRVYVGCMK--SG----PVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 229 (317)
Q Consensus 166 ~L~~-~~~~~~ly~G~~~--~~----pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~ 229 (317)
++.. ......+..|... .. +..+. ...+........ -...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRL--LLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHH--HcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 3444556666632 11 11110 000000000000 0011122356777899999999986
No 52
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=64.58 E-value=1.7e+02 Score=29.90 Aligned_cols=192 Identities=8% Similarity=-0.083 Sum_probs=91.8
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccc
Q 021108 47 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 126 (317)
Q Consensus 47 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy 126 (317)
.+.+-|+|+..-+..--.+.|+..=.+.. -.+.+++++...+. +...+.+++=.++|..+...-. + .
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ld--------Y~~~eIiVv~d~nd---d~T~~~v~~l~~~~p~v~~vv~-~-~ 131 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLD--------YENYRIFVGTYPND---PATLREVDRLAARYPRVHLVIV-P-H 131 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCC--------CCCeEEEEEECCCC---hhHHHHHHHHHHHCCCeEEEEe-C-C
Confidence 44566667665443333344444321111 13344444443222 2222333332455766533222 1 2
Q ss_pred cchhHHHHHHHHHHHh-------c--CCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcc---
Q 021108 127 LELSAKTKTYFATAVS-------M--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKY--- 194 (317)
Q Consensus 127 ~NLt~Ktl~~l~w~~~-------~--~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~--- 194 (317)
.+.+.|.- .++|+.+ + .++++++-.|-|..+.++.|..+- ..-+...+.-..+...+ + ..+.|
T Consensus 132 ~gp~~Ka~-aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~-~~~~~~~~VQ~pv~~~~--~-~~~~~~ag 206 (504)
T PRK14716 132 DGPTSKAD-CLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYN-YLLPRHDFVQLPVFSLP--R-DWGEWVAG 206 (504)
T ss_pred CCCCCHHH-HHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHH-hhcCCCCEEecceeccC--C-chhHHHHH
Confidence 23345654 3444322 1 256999999999999999987643 22222222111111100 0 01111
Q ss_pred -ccccccc-cc--CC---CCccCcCcCCCeeeecHHHHHHHHHhcc--ccC-CCCCChHHHHHHHhhCCCeE
Q 021108 195 -YEPEYWK-FG--EI---GNKYFRHATGQLYALSKDLATYISINQH--LLH-KYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 195 -yvp~~~~-~~--~~---~~~yP~Y~~G~gYvlS~~l~~~l~~~~~--~~~-~~~~EDv~vG~~l~~l~v~~ 256 (317)
|.-+... +. .+ .-.-+..+.|.|+++++++++.+..... ... ..--||.-+|.-+...|.+.
T Consensus 207 ~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv 278 (504)
T PRK14716 207 TYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQ 278 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEE
Confidence 1100000 00 00 0011233789999999999999865322 122 22359999999997777654
No 53
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=60.73 E-value=35 Score=32.96 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHHHHHhcCCceEEEEecCceeeeHH---HHHHHHhhcCCCCceeEEEeeccceeccCCCcccc---cccccccCCCCcc
Q 021108 136 YFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE---PEYWKFGEIGNKY 209 (317)
Q Consensus 136 ~l~w~~~~~~~~fvlK~DDD~fVn~~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yv---p~~~~~~~~~~~y 209 (317)
++.|+....++++++.+|||..+.++ -+...|..+...+.+++=.-.+. .+.+..+ |..+| .
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd-----nG~~~~~~~~~~~ly-------r 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND-----NGKEHFVDDTPSLLY-------R 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc-----CCcccccCCCcceEE-------E
Confidence 56666553479999999999999998 44555544444455543221110 1111111 32222 2
Q ss_pred CcCcCCCeeeecHHHHHHH
Q 021108 210 FRHATGQLYALSKDLATYI 228 (317)
Q Consensus 210 P~Y~~G~gYvlS~~l~~~l 228 (317)
-.|+.|.|+++.+++-..+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 2468899999999999887
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=57.18 E-value=63 Score=29.43 Aligned_cols=113 Identities=8% Similarity=0.025 Sum_probs=58.7
Q ss_pred HHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCC--CceeEEEe-ec-c-----ceeccCCCcccccccccccCC-
Q 021108 136 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK--PRVYVGCM-KS-G-----PVLARKGVKYYEPEYWKFGEI- 205 (317)
Q Consensus 136 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~--~~ly~G~~-~~-~-----pv~r~~~~K~yvp~~~~~~~~- 205 (317)
++++|.+ .+++|++..|||+.+..+.|...++..... .-..+|.. .. . +..+.. .+..+. .....+
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~ 140 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD--GLLLRQ-ISLDGLT 140 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec--ccceee-ecccccC
Confidence 5666654 378999999999999988877777654322 22233321 11 0 000000 010010 000000
Q ss_pred CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 021108 206 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 206 ~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~ 253 (317)
...-..++.++|.++++++++.+.--...+ .+..||+-+..=+...|
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G 187 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYG 187 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCC
Confidence 001123455667789999998875322222 23468887766665544
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=56.24 E-value=1.3e+02 Score=25.78 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=81.2
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEE-EeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 163 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~-~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L 163 (317)
..+.++.+-+.+.+ .....+++..+.++..++ .... .|.. |. .++....+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~---~n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLP---KNRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcc---cCCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 45677777776653 233445555556665422 2222 2221 21 23333333345699999999999999999
Q ss_pred HHHHhh-cCCCCceeEEEee--ccc--eeccCCCccccccc-----ccccCCCCccCcCcCCCeeeecHHHHHHHHHhcc
Q 021108 164 GMTLAA-HRTKPRVYVGCMK--SGP--VLARKGVKYYEPEY-----WKFGEIGNKYFRHATGQLYALSKDLATYISINQH 233 (317)
Q Consensus 164 ~~~L~~-~~~~~~ly~G~~~--~~p--v~r~~~~K~yvp~~-----~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~ 233 (317)
..+++. ......+.+|... ... ..+ .....+.+.. ..+ -...+. -...+..++++.++..+.....
T Consensus 101 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~-d~~~g~~~~~r~~~~~~~~~~~ 176 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSRAHLASAAVVKR-SWLRNLLGRGFNFLVRLL--LGLGIK-DTQCGFKLFTRDAARRLFPRLH 176 (211)
T ss_pred HHHHHHHhccCCcEEEEEeeccCCcccccc-cHHHHHHHHHHHHHHHHH--cCCCCc-ccccCceeEcHHHHHHHHhhhh
Confidence 888886 3344456667532 110 100 0000001000 000 011111 1234668999999999874321
Q ss_pred ccCCCCCChHHHHHHHhhCCCeEe
Q 021108 234 LLHKYANEDVSLGSWFIGLDVEHV 257 (317)
Q Consensus 234 ~~~~~~~EDv~vG~~l~~l~v~~~ 257 (317)
...| .+|.-+-.-+...|....
T Consensus 177 -~~~~-~~d~el~~r~~~~g~~~~ 198 (211)
T cd04188 177 -LERW-AFDVELLVLARRLGYPIE 198 (211)
T ss_pred -ccce-EeeHHHHHHHHHcCCeEE
Confidence 1222 357777666666665433
No 56
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=56.00 E-value=18 Score=32.55 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhhcCCCCc--eeEEEeec-c----ceeccCCCccccc----ccccccCCCCccCcC
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMKS-G----PVLARKGVKYYEP----EYWKFGEIGNKYFRH 212 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~~-~----pv~r~~~~K~yvp----~~~~~~~~~~~yP~Y 212 (317)
.+.+|++.+|.|+.+..+.|...+......+. ...|.+.. . +..+...--|... ..+. ....+...
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~---s~~g~~~~ 148 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFE---SVFGFVTC 148 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHH---HcCCceEE
Confidence 48899999999999999998887766532222 23344321 1 1100000001000 0000 11234566
Q ss_pred cCCCeeeecHHHHHHHHHhcc----------ccC-------CCCCChHHHHHHHhhCCC
Q 021108 213 ATGQLYALSKDLATYISINQH----------LLH-------KYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 213 ~~G~gYvlS~~l~~~l~~~~~----------~~~-------~~~~EDv~vG~~l~~l~v 254 (317)
+.|+++++.+++++.+..... .+. ....||..++..+...|-
T Consensus 149 ~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~ 207 (244)
T cd04190 149 LPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGP 207 (244)
T ss_pred CCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCC
Confidence 889999999998877632211 000 123599999888865553
No 57
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=54.11 E-value=1.4e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEE
Q 021108 138 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 180 (317)
Q Consensus 138 ~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~ 180 (317)
....+....+|++..|+|..+.+..|...+......+...+|.
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444445789999999999999988877665543333334454
No 58
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=53.98 E-value=1.5e+02 Score=29.73 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHHHh----cCCceEEEEecCceeeeHHHHHHHHhhc---CCCCceeEEEeeccceeccCCCcccc----cccc
Q 021108 132 KTKTYFATAVS----MWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYVGCMKSGPVLARKGVKYYE----PEYW 200 (317)
Q Consensus 132 Ktl~~l~w~~~----~~~~~fvlK~DDD~fVn~~~L~~~L~~~---~~~~~ly~G~~~~~pv~r~~~~K~yv----p~~~ 200 (317)
|.-.-++|+.. ..+++.++-+.||.-+-++-+.-+.... ...+.+|+=.-.+.+. ...++ |..+
T Consensus 174 ~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG-----~~~~~~~~~~~~l 248 (434)
T PF03071_consen 174 KIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNG-----KEHFVDDSRPSLL 248 (434)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT------BGGGS-TT-TT-E
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCC-----ccccccCCCccce
Confidence 44556667644 2468899999999999887655444332 2345666433221111 11121 2223
Q ss_pred cccCCCCccCcCcCCCeeeecHHHHHHHHH
Q 021108 201 KFGEIGNKYFRHATGQLYALSKDLATYISI 230 (317)
Q Consensus 201 ~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~ 230 (317)
|. -.|..|-|++|++++-..|..
T Consensus 249 yR-------sdffpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 249 YR-------SDFFPGLGWMLTRELWDELEP 271 (434)
T ss_dssp EE-------ESS---SSEEEEHHHHHHHGG
T ss_pred Ee-------cccCCchHHHhhHHHHHhhcc
Confidence 31 225679999999999876653
No 59
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=49.56 E-value=2.3e+02 Score=30.24 Aligned_cols=120 Identities=9% Similarity=-0.033 Sum_probs=69.9
Q ss_pred CCCCceeEEEEEECCCCCHH-HHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchh--HHHHHHHHhhcC---C
Q 021108 43 MLKRKYFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHG---D 116 (317)
Q Consensus 43 ~~~~~~~lli~V~S~p~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~--~~~L~~E~~~~~---D 116 (317)
.....+.+.|+|++.-+..+ -+..|+.+..+-.. ......+.+ |++..+.+++-.. ...+.+=.++|+ .
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~ 193 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGR 193 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCc
Confidence 34455677788888766554 34678888765431 001224454 8887665321100 111222234443 2
Q ss_pred EEEEeccccccchhHHHHHHHHHHHh-cCCceEEEEecCceeeeHHHHHHHHhhc
Q 021108 117 FLRLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH 170 (317)
Q Consensus 117 Ii~~df~Dsy~NLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~L~~~L~~~ 170 (317)
|.. ..--.|.-.|.-..-.|... -.+.+|++-.|-|+.+..+.|.+.+...
T Consensus 194 i~y---r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m 245 (691)
T PRK05454 194 IFY---RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLM 245 (691)
T ss_pred EEE---EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 333 22223444576665556554 3578999999999999999999988765
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=44.12 E-value=2.7e+02 Score=25.89 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=56.3
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCC--EEEEeccc
Q 021108 47 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIE 124 (317)
Q Consensus 47 ~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~D--Ii~~df~D 124 (317)
.+.+-|+|++--....-.++|..-..+. ...+.++.+-+.+.+ . ..+.+-.+.++| |.....
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt---------~~~~EiIVVDDgS~~--~---~~~~~~~~~~~~~ri~~i~~-- 67 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQD---------YSNWEMIIVDDCSTS--W---EQLQQYVTALNDPRITYIHN-- 67 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCC---------CCCeEEEEEECCCCC--H---HHHHHHHHHcCCCCEEEEEC--
Confidence 3456666666433222345555444432 234677777665541 1 223333344454 322222
Q ss_pred cccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhc
Q 021108 125 GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 170 (317)
Q Consensus 125 sy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~ 170 (317)
-.|.. .-.+...+.+....+|++..|+|..+.++.|...+...
T Consensus 68 -~~n~G--~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 68 -DINSG--ACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred -CCCCC--HHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 22221 11223334444578999999999999998888777654
No 61
>PHA01631 hypothetical protein
Probab=41.17 E-value=83 Score=27.40 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=40.7
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcccccccccccCCCCccCcCcCCCeeeecHH
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKD 223 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~ 223 (317)
-+-+.++.+|.|++|+.-. .. .++..++.=|.. . + .| |.+.+-+||.|.-|++.+.
T Consensus 70 i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A-~---~k-----------p~~~v~~FC~sTNf~~pr~ 125 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---L-Y---YD-----------WANEIRPFCSGTNYIFRKS 125 (176)
T ss_pred CCccEEEEeccceEecCcc--cc----ccCCCccceeee---e-e---ec-----------CCCcEEEEEccccEEeeHH
Confidence 4668888999999987543 11 122334433331 1 1 11 2334457899999999999
Q ss_pred HHHHHHHh
Q 021108 224 LATYISIN 231 (317)
Q Consensus 224 l~~~l~~~ 231 (317)
.+..|...
T Consensus 126 ~l~~l~~v 133 (176)
T PHA01631 126 LLPYLEYT 133 (176)
T ss_pred HhHHHHHH
Confidence 99988764
No 62
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=39.61 E-value=2.4e+02 Score=24.03 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=47.3
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhh-cCCCCceeEEEee-ccceeccCCCcc--cccc--cccccCCCCccCcCcCCCe
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCMK-SGPVLARKGVKY--YEPE--YWKFGEIGNKYFRHATGQL 217 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~~~~K~--yvp~--~~~~~~~~~~yP~Y~~G~g 217 (317)
...+|++.+|+|..+.++.|...++. ..+...+..|... ..... .....+ +.+. ..........-...+.|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 34589999999999999988888876 3444556656532 11110 000000 0000 0000000011123467888
Q ss_pred eeecHHHHHHHH
Q 021108 218 YALSKDLATYIS 229 (317)
Q Consensus 218 YvlS~~l~~~l~ 229 (317)
.+++++++..+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999987
No 63
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.75 E-value=1.6e+02 Score=27.95 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=56.4
Q ss_pred cCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecc--ccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHH
Q 021108 84 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 161 (317)
Q Consensus 84 ~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~--Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~ 161 (317)
..++.++|+-|.. .....|..=.....-++-+++. +++..-+.--..+..|+++.++.++++..|-|+|...+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4455666666543 3445555555566667777764 35555455556677888876799999999999999999
Q ss_pred HHHHHHh
Q 021108 162 TLGMTLA 168 (317)
Q Consensus 162 ~L~~~L~ 168 (317)
+..+.|.
T Consensus 111 nF~k~l~ 117 (346)
T COG4092 111 NFAKMLS 117 (346)
T ss_pred HHHHHHH
Confidence 9999883
No 64
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=34.51 E-value=2e+02 Score=21.51 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=30.1
Q ss_pred cCCEEEEeccccccchhHHHHHHHHHHHh-cCCceEEEEecCceeeeHHH
Q 021108 114 HGDFLRLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLAT 162 (317)
Q Consensus 114 ~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~-~~~~~fvlK~DDD~fVn~~~ 162 (317)
+.++-...+...+..-... ...++.+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4555555555666443333 333344433 35899999999999998765
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=31.86 E-value=2.3e+02 Score=21.52 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHhcCCceEEEEecCceeeeHHHHHHHHh
Q 021108 137 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLA 168 (317)
Q Consensus 137 l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~ 168 (317)
+..+.+..+.+|++-+|+|..+.++.+...+.
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHH
Confidence 34444434799999999999999988887644
No 66
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.54 E-value=3.5e+02 Score=22.90 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=58.2
Q ss_pred HHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEe--e--c-cceeccCCCcccccccccccCCCCccCcCcC
Q 021108 140 AVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCM--K--S-GPVLARKGVKYYEPEYWKFGEIGNKYFRHAT 214 (317)
Q Consensus 140 ~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~--~--~-~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~ 214 (317)
+......+|++..|+|..+....|...+....... ..+|.. . . ....+....++..... ....+ .+
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~ 137 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP-YG 137 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-cC
Confidence 33434579999999999999888877665543332 233332 1 1 1110100111111110 11112 24
Q ss_pred CCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 021108 215 GQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 215 G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
+.|.++++++...+-.-... +..||.-++.=+...|...
T Consensus 138 ~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 138 DQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred CceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCEE
Confidence 56889999988777533222 2679998888777776543
No 67
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=28.52 E-value=4.3e+02 Score=24.83 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=53.9
Q ss_pred cCcEEEEEEeecCCCCCchhHHHHHHHH----------hhcCCEE--EEeccccc------------cchhHHHHHHH-H
Q 021108 84 AKGIIIRFVIGHSATSGGILDKAIDAEE----------KMHGDFL--RLEHIEGY------------LELSAKTKTYF-A 138 (317)
Q Consensus 84 ~~~v~~~FvlG~~~~~~~~~~~~L~~E~----------~~~~DIi--~~df~Dsy------------~NLt~Ktl~~l-~ 138 (317)
...|.+-|+++.+... +...+.|+.+. ..|+.|. +-||.+.- +..-.+.++-. .
T Consensus 54 ~~lIsLgfLv~d~~e~-d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSEF-DNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCchh-HHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 4578899999988732 23334444333 3456644 34664321 12223333322 2
Q ss_pred HHHh---cCCceEEEEecCceeeeHHHHHHHHhhcC
Q 021108 139 TAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHR 171 (317)
Q Consensus 139 w~~~---~~~~~fvlK~DDD~fVn~~~L~~~L~~~~ 171 (317)
|+.. .+..+||+-.|-|+.-.++.|++.|-..+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 4322 36899999999999999999999997754
No 68
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=28.41 E-value=8.3e+02 Score=26.89 Aligned_cols=121 Identities=16% Similarity=0.023 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCce-eEEEe----eccceeccCCCccccc-cc-cccc
Q 021108 131 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCM----KSGPVLARKGVKYYEP-EY-WKFG 203 (317)
Q Consensus 131 ~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~----~~~pv~r~~~~K~yvp-~~-~~~~ 203 (317)
.|.- .++.+.+..+.+|++..|.|..+..+-|.+.+......+++ .++.. ...|..++-..--..+ +. .+++
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~ 404 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYG 404 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHH
Confidence 4443 45565555688999999999999988888766432111221 11211 1112111100000001 00 0000
Q ss_pred C--C--CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 204 E--I--GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 204 ~--~--~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
. + ...--.++.|++.++.++++..+.--... .--||..+++-+...|-+
T Consensus 405 ~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gyr 457 (852)
T PRK11498 405 LVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred HHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCCE
Confidence 0 0 00012457899999999999988532222 236999999999877754
No 69
>PLN03181 glycosyltransferase; Provisional
Probab=27.77 E-value=4.4e+02 Score=26.54 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=52.4
Q ss_pred HHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCC------CchhHHHH---HHHHhhcC-CEEEEe-ccc-cccchhHH
Q 021108 65 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS------GGILDKAI---DAEEKMHG-DFLRLE-HIE-GYLELSAK 132 (317)
Q Consensus 65 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~------~~~~~~~L---~~E~~~~~-DIi~~d-f~D-sy~NLt~K 132 (317)
++-|+.|.+.... ...+..-+++.|.|..+.. +.-+...+ .+=+++|| ++...+ ..+ .+..-..|
T Consensus 109 D~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 4556678875421 1224445677777765221 11222222 22346677 444333 223 45445566
Q ss_pred HHHHHHHHHhcCCceEEEEecCceeee
Q 021108 133 TKTYFATAVSMWDAEFYIKVDDDVHVN 159 (317)
Q Consensus 133 tl~~l~w~~~~~~~~fvlK~DDD~fVn 159 (317)
..++-.-+.+.|+++||.-.|.|+++-
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCceee
Confidence 666655566689999999999999873
No 70
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=24.75 E-value=1e+02 Score=28.24 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=53.7
Q ss_pred CCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceecc-CCCcccccccccccCCCCccCcCcCCCeeeecH
Q 021108 144 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLAR-KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSK 222 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~-~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~ 222 (317)
...+-|+-+|||+.++.+.|...++.....+.-++|..... ...+ ..++|--...+ ...| .-.-.++-++.+
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~-h~~~~~~~~~~Y~~~~-----~~~y-SmvLt~aaf~h~ 146 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRS-HSWDPSSGRWKYTSEW-----SNEY-SMVLTGAAFYHR 146 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEE-EEEE-ETTEEEEE-SS-----S--B-SEE-TTEEEEET
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccce-eecCCCccccccccCC-----CCcc-hhhhhhhHhhcc
Confidence 46789999999999999999888877765555677875211 1011 23344221111 1222 123455566666
Q ss_pred HHHHHHHHhcc-----cc-CCCCCChHHHHHHHhhC
Q 021108 223 DLATYISINQH-----LL-HKYANEDVSLGSWFIGL 252 (317)
Q Consensus 223 ~l~~~l~~~~~-----~~-~~~~~EDv~vG~~l~~l 252 (317)
........... .+ ....-||+.+-..++.+
T Consensus 147 ~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~~ 182 (247)
T PF09258_consen 147 YYLELYTHWLPASIREYVDEHFNCEDIAMNFLVSNL 182 (247)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 66554433111 11 12356999998777533
No 71
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=22.50 E-value=9.9e+02 Score=25.72 Aligned_cols=193 Identities=9% Similarity=-0.021 Sum_probs=96.7
Q ss_pred CceeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccc
Q 021108 46 RKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 125 (317)
Q Consensus 46 ~~~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Ds 125 (317)
..+.+-|+|+-.-+...-.+.|...=.... -.++.++++...+ |+.....+++-.++|+++..+....
T Consensus 61 ~~~~vsIlVPa~nE~~vi~~~i~~ll~~ld--------YP~~eI~vi~~~n---D~~T~~~~~~l~~~~p~~~~v~~~~- 128 (727)
T PRK11234 61 DEKPLAIMVPAWNETGVIGNMAELAATTLD--------YENYHIFVGTYPN---DPATQADVDAVCARFPNVHKVVCAR- 128 (727)
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHHhCC--------CCCeEEEEEecCC---ChhHHHHHHHHHHHCCCcEEEEeCC-
Confidence 345566677775544434444443211111 1235666665422 2333344555556788764333322
Q ss_pred ccchhHHHHHHHHHHHh-c------C--CceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeeccceeccCCCcc--
Q 021108 126 YLELSAKTKTYFATAVS-M------W--DAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKY-- 194 (317)
Q Consensus 126 y~NLt~Ktl~~l~w~~~-~------~--~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~-- 194 (317)
.+.+.|.-+ ++|+.. + . .++.++-.|-|+.|.++.|. .+....+...+.-+... |..++ ++.|
T Consensus 129 -~g~~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~~~ 202 (727)
T PRK11234 129 -PGPTSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHFTS 202 (727)
T ss_pred -CCCCCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHHHH
Confidence 222456544 444433 1 1 34557779999999999997 33333222222222111 21111 1111
Q ss_pred --cccccc-cccCC-----CCccCcCcCCCeeeecHHHHHHHHHhc---cccCCCCCChHHHHHHHhhCCCeE
Q 021108 195 --YEPEYW-KFGEI-----GNKYFRHATGQLYALSKDLATYISINQ---HLLHKYANEDVSLGSWFIGLDVEH 256 (317)
Q Consensus 195 --yvp~~~-~~~~~-----~~~yP~Y~~G~gYvlS~~l~~~l~~~~---~~~~~~~~EDv~vG~~l~~l~v~~ 256 (317)
|..+.. .++-+ .-.-+-.++|.|..+||.+++.+.+.. ......--||.-+|.-|...|.+.
T Consensus 203 ~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v 275 (727)
T PRK11234 203 GTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMRE 275 (727)
T ss_pred HHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEE
Confidence 111100 00000 001233489999999998877776654 222222359999999998777664
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=22.35 E-value=98 Score=30.57 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=43.8
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCCE---EEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDF---LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLAT 162 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DI---i~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~ 162 (317)
...++|.+-.+++ + .-+.++.=.++|..+ +..--++. .+.-|.-.++-= .+--+.+||+..|||+|+.++.
T Consensus 114 ~~ElLfcv~s~eD--p-Ai~vv~~Ll~kyp~VdAklf~gG~~v--g~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdt 187 (431)
T KOG2547|consen 114 KYELLFCVESSED--P-AIEVVERLLKKYPNVDAKLFFGGEKV--GLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDT 187 (431)
T ss_pred ceEEEEEEccCCC--c-HHHHHHHHHhhCCCcceEEEEccccc--ccChhhhccCHH-HHHhcCCEEEEecCCeeecCch
Confidence 4567777766653 2 223344445566532 11111111 122333322211 1112567999999999999999
Q ss_pred HHHHHhhcC
Q 021108 163 LGMTLAAHR 171 (317)
Q Consensus 163 L~~~L~~~~ 171 (317)
+.+.-.+..
T Consensus 188 ildm~t~M~ 196 (431)
T KOG2547|consen 188 ILDMATTMM 196 (431)
T ss_pred HHHHHHhhh
Confidence 999877653
No 73
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=21.60 E-value=66 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHH--HH---h-cCCceEEEEecCcee
Q 021108 131 AKTKTYFAT--AV---S-MWDAEFYIKVDDDVH 157 (317)
Q Consensus 131 ~Ktl~~l~w--~~---~-~~~~~fvlK~DDD~f 157 (317)
.++++.++. +. . |++++|++|.|++=+
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW 80 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHW 80 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceE
Confidence 355555554 22 2 899999999998755
No 74
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.27 E-value=6.4e+02 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCceEEEEecCceeeeHHHHHH
Q 021108 144 WDAEFYIKVDDDVHVNLATLGM 165 (317)
Q Consensus 144 ~~~~fvlK~DDD~fVn~~~L~~ 165 (317)
....|++-..||+.....-+..
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~ 189 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSR 189 (297)
T ss_pred hcCCeEEEecCCeEechhHHHH
Confidence 3678999999999887754433
Done!