Query 021108
Match_columns 317
No_of_seqs 193 out of 1252
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 100.0 5.5E-28 1.9E-32 224.7 15.6 193 47-266 12-216 (280)
2 1xhb_A Polypeptide N-acetylgal 95.3 1.2 4E-05 42.8 18.6 194 47-254 28-245 (472)
3 2d7i_A Polypeptide N-acetylgal 94.3 2 6.8E-05 42.6 17.7 194 47-254 111-325 (570)
4 1qg8_A Protein (spore coat pol 94.0 2.6 9.1E-05 36.1 17.1 154 86-253 30-201 (255)
5 2ffu_A Ppgalnact-2, polypeptid 93.2 4.6 0.00016 39.0 17.7 190 46-253 64-276 (501)
6 4fix_A UDP-galactofuranosyl tr 93.1 4.1 0.00014 41.4 17.7 118 135-254 258-404 (657)
7 2z86_A Chondroitin synthase; G 87.1 24 0.00083 34.7 17.5 44 212-255 275-318 (625)
8 4hg6_A Cellulose synthase subu 83.2 37 0.0013 35.0 16.7 126 136-264 229-367 (802)
9 2z86_A Chondroitin synthase; G 82.2 21 0.00072 35.2 13.9 151 85-253 403-559 (625)
10 3bcv_A Putative glycosyltransf 80.3 22 0.00075 29.7 11.7 194 48-260 5-220 (240)
11 2c0n_A A197; thermophil protei 59.7 84 0.0029 27.0 10.5 134 105-250 15-159 (203)
12 2bo4_A Mannosylglycerate synth 31.4 3.3E+02 0.011 25.4 14.1 164 86-255 28-207 (397)
13 1fo8_A Alpha-1,3-mannosyl-glyc 23.7 1.7E+02 0.0059 26.9 7.0 85 135-229 89-178 (343)
14 2l82_A Designed protein OR32; 20.2 1.6E+02 0.0056 22.8 5.0 53 54-119 55-107 (162)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.95 E-value=5.5e-28 Score=224.70 Aligned_cols=193 Identities=17% Similarity=0.182 Sum_probs=132.2
Q ss_pred ceeEEEEEECCCC-CHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecc--
Q 021108 47 KYFMVIGINTAFS-SRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI-- 123 (317)
Q Consensus 47 ~~~lli~V~S~p~-~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~-- 123 (317)
.-.|+|+|+|+++ +.+|+++||+||++.... . +|+.+... ++.+ ... ..+++++.++.
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-------~----~fifsd~~--d~~l----~~~--~~~~~~~~~~~~~ 72 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-------Q----TFIFTDSP--DERL----QER--LGPHLVVTQCSAE 72 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-------G----EEEEESSC--CHHH----HHH--HGGGEEECCC---
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCCC-------c----eEEEcCCC--cccc----ccc--ccccceecccccc
Confidence 4568889999998 557889999999987631 1 23333322 1222 221 24678887764
Q ss_pred ccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEEeec-cceeccCCCcccccccccc
Q 021108 124 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWKF 202 (317)
Q Consensus 124 Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~K~yvp~~~~~ 202 (317)
+++.+++.|+...+++.. +++++|++|+|||+||++++|+++|...++.+++|+|.... .|. |. ++++|.+.+
T Consensus 73 ~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~-~~---~~~~~~~~~- 146 (280)
T 2j0a_A 73 HSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPI-HA---SELQSKQRT- 146 (280)
T ss_dssp ----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC--------------------
T ss_pred ccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccc-cc---cccCccccc-
Confidence 477899999999998764 36999999999999999999999999999999999999753 343 31 345554322
Q ss_pred cCCCCccCcCcCCCeeeecHHHHHHHHHhcccc-------CCCCCChHHHHHHHh-hCCCeEecCCCcccCC
Q 021108 203 GEIGNKYFRHATGQLYALSKDLATYISINQHLL-------HKYANEDVSLGSWFI-GLDVEHVDDRRLCCGT 266 (317)
Q Consensus 203 ~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~-------~~~~~EDv~vG~~l~-~l~v~~~~~~~F~~~~ 266 (317)
+...|+.+.+|+|||||++++++|+...... .....||+++|+||. .+||.+.+.++|+...
T Consensus 147 --~~~~~~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~ 216 (280)
T 2j0a_A 147 --KLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHL 216 (280)
T ss_dssp ------CCEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSS
T ss_pred --cccccCcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCC
Confidence 2234543346789999999999999854332 122368999999998 9999999999998654
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=95.33 E-value=1.2 Score=42.81 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=99.5
Q ss_pred ceeEEEEEECCCCC-HHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcC-CEEEEeccc
Q 021108 47 KYFMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIE 124 (317)
Q Consensus 47 ~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~-DIi~~df~D 124 (317)
.+.+-|+|++--.. ..-+++|..--.+.. ......++.|-..+. ++...+.|++-.+.+. .+..+...+
T Consensus 28 ~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~-------~~~~~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~ 98 (472)
T 1xhb_A 28 LPTTSVVIVFHNEAWSTLLRTVHSVINRSP-------RHMIEEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQ 98 (472)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSSC-------GGGEEEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSS
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHHHhcCc-------HhHceEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44566777776444 233333333222211 011245666665554 2234455655556666 455554433
Q ss_pred cccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCC-ceeEEEee--c-cceeccCC-------Cc
Q 021108 125 GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK--S-GPVLARKG-------VK 193 (317)
Q Consensus 125 sy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~-~ly~G~~~--~-~pv~r~~~-------~K 193 (317)
+. . ...+.....+....+|++..|+|+.+.++-|...+......+ .+..|.+. . ........ -.
T Consensus 99 n~---G--~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (472)
T 1xhb_A 99 RS---G--LIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFN 173 (472)
T ss_dssp CC---C--HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEEC
T ss_pred CC---C--hHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceee
Confidence 22 2 222334444445789999999999999887777776553222 23333321 1 10000000 00
Q ss_pred cccccccc-c---------cC-CCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 194 YYEPEYWK-F---------GE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 194 ~yvp~~~~-~---------~~-~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
|.....+. + .. .....-+++.|++++++++++..+---...+..+..||+-++.-+...|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~ 245 (472)
T 1xhb_A 174 WKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGG 245 (472)
T ss_dssp TTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTC
T ss_pred ccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCC
Confidence 11000000 0 00 01233457889999999999998764333444445799999877765553
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=94.29 E-value=2 Score=42.63 Aligned_cols=194 Identities=11% Similarity=-0.031 Sum_probs=99.6
Q ss_pred ceeEEEEEECCCCC-HHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccc
Q 021108 47 KYFMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 125 (317)
Q Consensus 47 ~~~lli~V~S~p~~-~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Ds 125 (317)
.+.+-|+|++--.. ..-+.+|..--.+.. ......++.|-..+. ++++.+.|++..+.+..|..+.....
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~-------~~~~~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n 181 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSP-------PELVAEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKR 181 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSC-------GGGEEEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCC-------ccCcEEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCC
Confidence 35677777776544 223334433322221 011235666665554 34435566666666766655543322
Q ss_pred ccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCceeEEE-ee---ccce-eccC--C-----Cc
Q 021108 126 YLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC-MK---SGPV-LARK--G-----VK 193 (317)
Q Consensus 126 y~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~-~~---~~pv-~r~~--~-----~K 193 (317)
.++.. +.....+....+||+..|+|+.+.++-|..++..........+|. +. .... .+.. . -.
T Consensus 182 -~G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~ 256 (570)
T 2d7i_A 182 -EGLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFD 256 (570)
T ss_dssp -CCHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEEC
T ss_pred -CCHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCccccccc
Confidence 22222 233333334679999999999999877666665543223333332 21 1100 0000 0 00
Q ss_pred cc-----cc--ccccccC-CCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 194 YY-----EP--EYWKFGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 194 ~y-----vp--~~~~~~~-~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
|. .+ ....+.. ....--+++.|+++++++++...+---...+..+..||+-+..-+...|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~ 325 (570)
T 2d7i_A 257 WEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGG 325 (570)
T ss_dssp TTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTC
T ss_pred ccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCC
Confidence 10 00 0000000 01122346789999999999998854333444444799999877766653
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=93.99 E-value=2.6 Score=36.07 Aligned_cols=154 Identities=8% Similarity=-0.128 Sum_probs=83.0
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccc-----cchhHHHHHHHHHHHhcCCceEEEEecCceeeeH
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-----LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 160 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy-----~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~ 160 (317)
.+.++.+-..+. ++ .. .+.++......|..+.....- .|.. .-.++..+.+..+.+|++..|+|.++.+
T Consensus 30 ~~eiivvDd~S~--d~-t~-~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN--EE-TL-NVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC--HH-HH-HHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC--ch-HH-HHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 567777766554 22 22 233333334455444332100 2332 3334555555458899999999999998
Q ss_pred HHHHHHHhhcC--CCCceeEEEee----c--cceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHH-Hh
Q 021108 161 ATLGMTLAAHR--TKPRVYVGCMK----S--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS-IN 231 (317)
Q Consensus 161 ~~L~~~L~~~~--~~~~ly~G~~~----~--~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~-~~ 231 (317)
+.|...+.... +.-.+..|.+. . +... ..+..|.... ......++.|++.++.++++..+. .-
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~rr~~~~~~g~~f 175 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQV----TWNAPCAIDHCSVMHRYSVLEKVKEKF 175 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCSC----BSCCTTTSCGGGEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHHH----HHhhcCCCccceEEEEHHHHHhhcccc
Confidence 88777776553 33345545432 1 1111 0111221110 113344578999999999999976 22
Q ss_pred c----cccCCCCCChHHHHHHHhhCC
Q 021108 232 Q----HLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 232 ~----~~~~~~~~EDv~vG~~l~~l~ 253 (317)
. ........||..+..-+...+
T Consensus 176 ~~~~~~~~~~~~~eD~~~~~r~~~~g 201 (255)
T 1qg8_A 176 GSYWDESPAFYRIGDARFFWRVNHFY 201 (255)
T ss_dssp SSSSCCCGGGSTTHHHHHHHHHTTTC
T ss_pred cccccCCcccchHHHHHHHHHHHHhC
Confidence 0 011223579999887775444
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.17 E-value=4.6 Score=38.97 Aligned_cols=190 Identities=10% Similarity=-0.060 Sum_probs=97.3
Q ss_pred CceeEEEEEECCCCCH-HHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccc
Q 021108 46 RKYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE 124 (317)
Q Consensus 46 ~~~~lli~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~D 124 (317)
..+.+-|+|++--... .-++.|..--.+.. ......+++|-..+. +++.... .+.+..+..+....
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~-------~~~~~EIIvVDDgS~--D~t~~~~----~~~~~~v~vi~~~~ 130 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSP-------PHLIKEIILVDDYSN--DPEDGAL----LGKIEKVRVLRNDR 130 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSC-------GGGEEEEEEEECSCS--CTHHHHG----GGGBTTEEEEECSS
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCc-------hhhceeEEEEECCCC--chHHHHH----HhcCCCEEEEECCC
Confidence 3456777777764443 33344433322221 112246777766554 2333222 34556665554332
Q ss_pred cccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCCCCc-eeEEEee--c-cce--------ecc---
Q 021108 125 GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR-VYVGCMK--S-GPV--------LAR--- 189 (317)
Q Consensus 125 sy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~~~~-ly~G~~~--~-~pv--------~r~--- 189 (317)
|.. ...++....+....+||+..|+|..+.++-|..++........ +..+.+. . ... .+.
T Consensus 131 ---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (501)
T 2ffu_A 131 ---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFD 205 (501)
T ss_dssp ---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEEC
T ss_pred ---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEee
Confidence 222 2334444444457899999999999998877777765532222 3333221 0 000 000
Q ss_pred --CCCccc-ccccc---cc-cCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 021108 190 --KGVKYY-EPEYW---KF-GEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 253 (317)
Q Consensus 190 --~~~K~y-vp~~~---~~-~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~ 253 (317)
...+|. .+... .. ........+++.|++.+++++++..+..-...+..+..||+-+..-+...|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G 276 (501)
T 2ffu_A 206 WNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCG 276 (501)
T ss_dssp TTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTT
T ss_pred ecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcC
Confidence 000110 11000 00 000122345688999999999999886433344444589999987775555
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=93.09 E-value=4.1 Score=41.39 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcC--CCCceeEEEee--ccc-eec------cC-CCccc-cccccc
Q 021108 135 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--SGP-VLA------RK-GVKYY-EPEYWK 201 (317)
Q Consensus 135 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~--~~p-v~r------~~-~~K~y-vp~~~~ 201 (317)
.+++.+....+++||+..|||+.+.++.|...+.... +...+..|.+. ..+ .+. +. .-.|. .+...+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 3566665434789999999999999988877776542 22233433432 111 000 00 00000 000000
Q ss_pred ---c-----c--------CCCCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 021108 202 ---F-----G--------EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 254 (317)
Q Consensus 202 ---~-----~--------~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v 254 (317)
| . ........|++|++.++.+++++.+---.. -.+..||+-++.=+...|.
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G~ 404 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHGY 404 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcCC
Confidence 0 0 011233458899999999999998753221 2234699999988866653
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=87.12 E-value=24 Score=34.68 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=31.7
Q ss_pred CcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 021108 212 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 255 (317)
Q Consensus 212 Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v~ 255 (317)
++.|++.+++++++..+.--...+..+..||.-++.-+...|..
T Consensus 275 ~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~ 318 (625)
T 2z86_A 275 FFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCY 318 (625)
T ss_dssp GCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCE
T ss_pred EEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCce
Confidence 47899999999999988533233333347999998888666543
No 8
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=83.23 E-value=37 Score=34.99 Aligned_cols=126 Identities=10% Similarity=-0.040 Sum_probs=67.9
Q ss_pred HHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhc--CCCCceeEEEee---ccceeccCC--CcccccccccccC--C-
Q 021108 136 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH--RTKPRVYVGCMK---SGPVLARKG--VKYYEPEYWKFGE--I- 205 (317)
Q Consensus 136 ~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~--~~~~~ly~G~~~---~~pv~r~~~--~K~yvp~~~~~~~--~- 205 (317)
.+..+.+..+.+|++..|+|+.+.++.|.+.+... ++.-.+..|... ..+..+... .........++.. .
T Consensus 229 alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (802)
T 4hg6_A 229 NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRG 308 (802)
T ss_dssp HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhh
Confidence 35555555588999999999999998888877665 233333333321 111111100 0000000000000 0
Q ss_pred -CCccCcCcCCCeeeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC--eEecCCCccc
Q 021108 206 -GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV--EHVDDRRLCC 264 (317)
Q Consensus 206 -~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~~~EDv~vG~~l~~l~v--~~~~~~~F~~ 264 (317)
...-.+++.|++.++.+++++.+.--.. ..-.||..++.-+...|- ...++....+
T Consensus 309 ~~~~~~~~~~G~~~~~Rr~al~~vGgf~~---~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~ 367 (802)
T 4hg6_A 309 LDRWGGAFFCGSAAVLRRRALDEAGGFAG---ETITEDAETALEIHSRGWKSLYIDRAMIAG 367 (802)
T ss_dssp HHHTTCCCCCSSSEEEEHHHHHHHTTCCC---SSSSHHHHHHHHHHTTTCCEEECCCCCEEE
T ss_pred HhhcCCceecccchhhhHHHHHHcCCcCC---CCcchHHHHHHHHHHcCCeEEEecCCEEEe
Confidence 0001134679999999999998742211 122599999998876654 3444444444
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=82.18 E-value=21 Score=35.16 Aligned_cols=151 Identities=9% Similarity=-0.001 Sum_probs=78.6
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHH
Q 021108 85 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 164 (317)
Q Consensus 85 ~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~ 164 (317)
..+.++.+-..+.+ . ..+.+.+-.+.+..|.... . .|.. .-.++..+.+..+.+|++..|+|.++.++.|.
T Consensus 403 ~~~eiivvdd~S~d--~-t~~~~~~~~~~~~~i~~~~-~---~n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 403 TDLEVCICDDGSTD--D-TLRILQEHYANHPRVRFIS-Q---KNKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp CSEEEEEEEESCSS--S-HHHHHHHHHTTCTTEEEEE-E---CCCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CCeEEEEEECcCCh--h-HHHHHHHHHhhCCcEEEEe-C---CCCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 35677777766652 2 2334444344555565553 2 2222 22334444444578999999999999998887
Q ss_pred HHHhhcC--CCCceeEEEee----ccceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhccccCCC
Q 021108 165 MTLAAHR--TKPRVYVGCMK----SGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKY 238 (317)
Q Consensus 165 ~~L~~~~--~~~~ly~G~~~----~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~~~~~~ 238 (317)
..+.... +.-.+..|... .+..+... +..+. +. +....-.++.|++.++.+++...+.--... ..
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~--~~ 544 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNES--IS 544 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSS--CS
T ss_pred HHHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCCc--cC
Confidence 7776542 22233333221 11111110 01110 00 001122346778889998876654321111 22
Q ss_pred CCChHHHHHHHhhCC
Q 021108 239 ANEDVSLGSWFIGLD 253 (317)
Q Consensus 239 ~~EDv~vG~~l~~l~ 253 (317)
..||.-+..-+...|
T Consensus 545 ~~eD~dl~~r~~~~g 559 (625)
T 2z86_A 545 NAVDYDMYLKLSEVG 559 (625)
T ss_dssp SCHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHhC
Confidence 469998877776555
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=80.25 E-value=22 Score=29.67 Aligned_cols=194 Identities=10% Similarity=-0.006 Sum_probs=92.4
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEEEecccccc
Q 021108 48 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYL 127 (317)
Q Consensus 48 ~~lli~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~~df~Dsy~ 127 (317)
+.+-|+|++--....-+++|+.--.+. ...+.++.|-..+.+ . ..+.+++-.+.+..|.... .+
T Consensus 5 p~vsViIp~yn~~~~l~~~l~Sl~~q~---------~~~~eiIvvDd~S~d--~-t~~~~~~~~~~~~~i~~i~-~~--- 68 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLDQCVQALLAQT---------LSDIEIILIDDESPD--N-CPKICDDYAAQYPNIKVIH-KK--- 68 (240)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHTCS---------SSSEEEEEEECCCSS--S-HHHHHHHHHHHCSSEEEEE-CC---
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHhCc---------CCCeEEEEEECCCCc--C-HHHHHHHHHhhCCCEEEEE-CC---
Confidence 345566666433222334444332222 235677777665542 2 3344555455666665554 22
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhhcCC-CCceeEEEe-e---cc----ceeccC-CCccccc
Q 021108 128 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCM-K---SG----PVLARK-GVKYYEP 197 (317)
Q Consensus 128 NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~~~~-~~~ly~G~~-~---~~----pv~r~~-~~K~yvp 197 (317)
|.. .-.+...+.+..+.+|++..|+|.++.++.|...+..... ...+..|.. . .+ .+.+.. ...++..
T Consensus 69 n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (240)
T 3bcv_A 69 NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNK 146 (240)
T ss_dssp CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC--------------------CEEECSH
T ss_pred CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCH
Confidence 322 2233444444457799999999999998887777665432 233443332 1 11 110000 0011111
Q ss_pred ccc--cccCCCCccC-------cCcCCCeeeecHHHHHHHH-HhccccCCCCCChHHHHHHHhhCC--CeEecCC
Q 021108 198 EYW--KFGEIGNKYF-------RHATGQLYALSKDLATYIS-INQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 260 (317)
Q Consensus 198 ~~~--~~~~~~~~yP-------~Y~~G~gYvlS~~l~~~l~-~~~~~~~~~~~EDv~vG~~l~~l~--v~~~~~~ 260 (317)
... .+......-| ...+|++.++.++++..+- .-.... .+..||+.++.-+...| +..++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~-~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 147 NEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVSER-ILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCCTT-TCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHHHHHHHHHhhcchhhccccccccchhheeeeHHHHHHcCCccCCCC-CccCCCHHHHHHHHHhCCEEEEECCC
Confidence 000 0000000000 0145788999999998853 111111 12469999988775554 4444443
No 11
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=59.71 E-value=84 Score=26.97 Aligned_cols=134 Identities=11% Similarity=-0.021 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHHhcCCceEEEEecCc---eeeeHHHHHHHHhhcCCCCceeEEEe
Q 021108 105 KAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDD---VHVNLATLGMTLAAHRTKPRVYVGCM 181 (317)
Q Consensus 105 ~~L~~E~~~~~DIi~~df~Dsy~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD---~fVn~~~L~~~L~~~~~~~~ly~G~~ 181 (317)
-.|..+..+.|==+++.+.++.-+...=.+. =.|+. ..++++++.+|.| +-.+++.+.++|+. ..++.+|..
T Consensus 15 l~l~~~l~~~gi~~~l~~~~SlI~raRN~lv-~~Fl~-~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV~GsY 89 (203)
T 2c0n_A 15 LPLIDFLVKNDIEYVILSRRNHVAVQREIAL-DMFLE-MKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVVCGYY 89 (203)
T ss_dssp HHHHHHHHHTTCCEEEECCCSCHHHHHHHHH-HHHHH-CTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEEEEEC
T ss_pred hHHHHHHHhCCCeEEEEccccchHHHHHHHH-HHHHh-cCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEEEEEe
Confidence 3455666666644555555443222221222 22444 4689999999999 99999999999964 356777763
Q ss_pred --eccceeccCCCcccccccccccCCCCccCcCcCCCeeeecHHHHHHHHHhcc------ccCCCCCChHHHHHHHh
Q 021108 182 --KSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH------LLHKYANEDVSLGSWFI 250 (317)
Q Consensus 182 --~~~pv~r~~~~K~yvp~~~~~~~~~~~yP~Y~~G~gYvlS~~l~~~l~~~~~------~~~~~~~EDv~vG~~l~ 250 (317)
++..-. ....+.|.-.-. + .=-.||++|.-+++|.++..|....- ..+-.--|||++=.-+.
T Consensus 90 p~K~~~~~-s~~a~~y~~~i~----~--~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k 159 (203)
T 2c0n_A 90 YLKTLRGY-SVYRKDWEKEIF----D--GEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHK 159 (203)
T ss_dssp BCTTSSSB-SEESSSBCSSCC----C--EECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHC
T ss_pred eccCCCcc-chHHHHHHHhcc----C--ceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEeccc
Confidence 221100 000112221100 0 11236888889999999999865422 12222349988866554
No 12
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=31.37 E-value=3.3e+02 Score=25.42 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=83.2
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHh-hcCC-EEEEeccc-c--ccchhHHHHHHHHHHHhcCCceEEEEecCcee-ee
Q 021108 86 GIIIRFVIGHSATSGGILDKAIDAEEK-MHGD-FLRLEHIE-G--YLELSAKTKTYFATAVSMWDAEFYIKVDDDVH-VN 159 (317)
Q Consensus 86 ~v~~~FvlG~~~~~~~~~~~~L~~E~~-~~~D-Ii~~df~D-s--y~NLt~Ktl~~l~w~~~~~~~~fvlK~DDD~f-Vn 159 (317)
...+++|-+-|++...++-+.+..+.. .++. ++...... . -.....=...+++|+....+.++++..|-|.- .+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 456899998777321122222333433 3454 33332220 1 23445556778888863347899999999995 78
Q ss_pred HHHHHHHHhhcCCCCceeEEEee----ccceeccCCCcccccccccccCCC--CccCcCcCCCeeeecHHHHHHHHHhc-
Q 021108 160 LATLGMTLAAHRTKPRVYVGCMK----SGPVLARKGVKYYEPEYWKFGEIG--NKYFRHATGQLYALSKDLATYISINQ- 232 (317)
Q Consensus 160 ~~~L~~~L~~~~~~~~ly~G~~~----~~pv~r~~~~K~yvp~~~~~~~~~--~~yP~Y~~G~gYvlS~~l~~~l~~~~- 232 (317)
+.-+..++....+.-++..|... ++.+. ....++.... .+ +. ........++.+++++++++.+....
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~-~~~~~~ll~~-~~---~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~ 182 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMIT-WMITRTGFAL-LW---PHTELSWIEQPLGGELLMRREVAAMLYEDER 182 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHH-HHTHHHHHHH-HC---TTSSGGGCSCTTCCCEEEEHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHH-HHHHHHHHHH-HH---HHhhccccccCCcccEEEeHHHHHHHhhhcc
Confidence 87777777654333355566531 11110 0000110000 00 10 01122235677899999999985421
Q ss_pred -cccCCCCCChHHHHHHHh--hCCCe
Q 021108 233 -HLLHKYANEDVSLGSWFI--GLDVE 255 (317)
Q Consensus 233 -~~~~~~~~EDv~vG~~l~--~l~v~ 255 (317)
.....|. .|+.+...+. ++.|.
T Consensus 183 ~~~~~~fg-~eiel~~~a~~~G~rI~ 207 (397)
T 2bo4_A 183 VRRRSDWG-IDTLYTFVTVQQGVSIY 207 (397)
T ss_dssp HHTCCSTT-HHHHHHHHHHHTTCCEE
T ss_pred cCcCCCcc-hHHHHHHHHHHcCCEEE
Confidence 1222232 4666655554 44444
No 13
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=23.71 E-value=1.7e+02 Score=26.86 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCceEEEEecCceeeeHHHHHHHHhh---cCCCCceeEEEeec--cceeccCCCcccccccccccCCCCcc
Q 021108 135 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA---HRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKY 209 (317)
Q Consensus 135 ~~l~w~~~~~~~~fvlK~DDD~fVn~~~L~~~L~~---~~~~~~ly~G~~~~--~pv~r~~~~K~yvp~~~~~~~~~~~y 209 (317)
.++.++....+.++++.+|||..+.++-+.-+... +...+.++ ++.+ .+....... -..+...+ .
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~--~ISa~n~~g~~~~~~-~~~~~~ly-------r 158 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLW--CVSAWNDNGKEQMVD-SSKPELLY-------R 158 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEE--EEESCCTTCBGGGSC-TTCTTCEE-------E
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEE--EEecccCcccccccc-ccCcceEE-------e
Confidence 34445444347999999999999999765433332 23344554 2321 111000000 00111111 2
Q ss_pred CcCcCCCeeeecHHHHHHHH
Q 021108 210 FRHATGQLYALSKDLATYIS 229 (317)
Q Consensus 210 P~Y~~G~gYvlS~~l~~~l~ 229 (317)
-.|..|.|+.+++++-+.+-
T Consensus 159 s~~f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 159 TDFFPGLGWLLLAELWAELE 178 (343)
T ss_dssp ESSCCCSSEEEEHHHHHHHG
T ss_pred ecCCCchhhhhcHHHHHHHh
Confidence 23567899999999988654
No 14
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.22 E-value=1.6e+02 Score=22.79 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=34.3
Q ss_pred EECCCCCHHHHHHHHHHhhhcchhhhhhhccCcEEEEEEeecCCCCCchhHHHHHHHHhhcCCEEE
Q 021108 54 INTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR 119 (317)
Q Consensus 54 V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~L~~E~~~~~DIi~ 119 (317)
|.|-....+-|+.||+.|-.... +.++.++... +.++-+...+|++..|--+.
T Consensus 55 vrtvedkedfrenireiwerypq----------ldvvvivttd---dkewikdfieeakergvevf 107 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYPQ----------LDVVVIVTTD---DKEWIKDFIEEAKERGVEVF 107 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCTT----------CCEEEEEECC---CHHHHHHHHHHHHHTTCEEE
T ss_pred eeeeccHHHHHHHHHHHHHhCCC----------CcEEEEEecC---cHHHHHHHHHHHHhcCcEEE
Confidence 44555556789999999998752 2344444433 34666677788888875443
Done!