Query 021109
Match_columns 317
No_of_seqs 177 out of 763
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00207 hypothetical protein; 100.0 3.6E-39 7.9E-44 327.4 16.8 268 2-303 147-450 (591)
2 PF06813 Nodulin-like: Nodulin 100.0 3.8E-29 8.3E-34 229.7 11.6 127 1-127 122-250 (250)
3 TIGR00890 2A0111 Oxalate/Forma 98.2 1.2E-05 2.7E-10 75.2 11.3 72 207-278 197-270 (377)
4 KOG2504 Monocarboxylate transp 97.9 9.6E-05 2.1E-09 75.0 11.3 85 209-297 292-380 (509)
5 TIGR00893 2A0114 d-galactonate 97.4 0.0018 3.9E-08 60.5 11.1 73 207-279 207-282 (399)
6 TIGR00886 2A0108 nitrite extru 97.3 0.0025 5.4E-08 60.1 11.1 72 207-278 217-291 (366)
7 TIGR00892 2A0113 monocarboxyla 97.2 0.002 4.4E-08 63.9 9.9 67 209-275 235-303 (455)
8 PLN00028 nitrate transmembrane 97.1 0.00084 1.8E-08 67.1 6.6 75 207-281 244-321 (476)
9 TIGR00894 2A0114euk Na(+)-depe 97.0 0.011 2.4E-07 58.3 12.6 78 207-284 253-333 (465)
10 PRK11663 regulatory protein Uh 96.9 0.015 3.3E-07 57.0 12.6 68 211-278 239-309 (434)
11 TIGR00881 2A0104 phosphoglycer 96.8 0.013 2.8E-07 54.8 11.1 73 207-279 208-283 (379)
12 PRK11273 glpT sn-glycerol-3-ph 96.8 0.015 3.3E-07 57.4 12.0 69 210-278 248-319 (452)
13 TIGR00712 glpT glycerol-3-phos 96.6 0.028 6E-07 55.2 12.4 70 210-279 246-318 (438)
14 TIGR00711 efflux_EmrB drug res 96.5 0.039 8.5E-07 54.2 12.6 87 209-299 249-338 (485)
15 TIGR00896 CynX cyanate transpo 96.3 0.0096 2.1E-07 56.4 6.6 71 208-278 190-262 (355)
16 PRK09705 cynX putative cyanate 96.1 0.0098 2.1E-07 57.6 5.9 70 209-278 199-270 (393)
17 TIGR00886 2A0108 nitrite extru 96.1 0.012 2.6E-07 55.5 6.0 83 216-302 2-87 (366)
18 TIGR00879 SP MFS transporter, 96.0 0.059 1.3E-06 51.9 10.4 64 215-278 284-349 (481)
19 PRK09528 lacY galactoside perm 95.9 0.013 2.8E-07 57.0 5.7 70 209-278 4-76 (420)
20 TIGR00900 2A0121 H+ Antiporter 95.8 0.034 7.4E-07 51.7 7.9 71 208-278 203-277 (365)
21 PRK14995 methyl viologen resis 95.7 0.33 7.1E-06 48.7 14.7 70 209-278 253-325 (495)
22 PRK09556 uhpT sugar phosphate 95.6 0.021 4.4E-07 56.7 5.9 69 210-278 253-324 (467)
23 COG2223 NarK Nitrate/nitrite t 95.6 0.025 5.4E-07 55.7 6.3 91 207-301 210-303 (417)
24 PRK10213 nepI ribonucleoside t 95.6 0.022 4.9E-07 55.3 6.0 83 216-302 18-105 (394)
25 PRK03633 putative MFS family t 95.6 0.026 5.7E-07 54.1 6.3 82 213-298 4-87 (381)
26 PF07690 MFS_1: Major Facilita 95.4 0.029 6.4E-07 52.0 5.6 71 208-278 199-273 (352)
27 PRK10504 putative transporter; 95.2 0.036 7.9E-07 54.6 5.9 80 214-297 9-90 (471)
28 COG2271 UhpC Sugar phosphate p 95.1 0.12 2.7E-06 51.1 9.2 72 210-282 247-322 (448)
29 TIGR00898 2A0119 cation transp 95.1 0.13 2.7E-06 51.2 9.6 72 206-278 314-385 (505)
30 TIGR00882 2A0105 oligosacchari 95.0 0.032 6.9E-07 53.8 4.9 66 214-279 1-69 (396)
31 PRK11652 emrD multidrug resist 95.0 0.066 1.4E-06 51.4 7.0 77 217-297 10-88 (394)
32 PRK15403 multidrug efflux syst 95.0 0.061 1.3E-06 52.6 6.8 68 230-301 31-100 (413)
33 TIGR00887 2A0109 phosphate:H+ 95.0 0.26 5.7E-06 49.3 11.5 25 254-278 341-365 (502)
34 PRK10091 MFS transport protein 95.0 0.072 1.6E-06 51.2 7.1 70 209-278 193-265 (382)
35 TIGR00710 efflux_Bcr_CflA drug 94.9 0.083 1.8E-06 49.9 7.2 81 216-300 5-88 (385)
36 PRK09874 drug efflux system pr 94.8 0.081 1.7E-06 50.6 7.1 82 214-299 13-101 (408)
37 TIGR01299 synapt_SV2 synaptic 94.7 0.058 1.2E-06 57.4 6.3 68 211-278 159-232 (742)
38 PRK10091 MFS transport protein 94.7 0.056 1.2E-06 51.9 5.7 83 215-301 3-87 (382)
39 TIGR00902 2A0127 phenyl propri 94.7 0.082 1.8E-06 50.8 6.8 94 207-304 197-292 (382)
40 PRK12382 putative transporter; 94.7 0.047 1E-06 52.3 5.1 69 210-278 10-81 (392)
41 PRK15402 multidrug efflux syst 94.7 0.085 1.8E-06 50.9 6.8 79 215-297 9-93 (406)
42 PRK09528 lacY galactoside perm 94.6 0.088 1.9E-06 51.2 6.9 70 209-278 217-292 (420)
43 PRK03545 putative arabinose tr 94.6 0.082 1.8E-06 50.8 6.5 72 207-278 197-271 (390)
44 TIGR00890 2A0111 Oxalate/Forma 94.5 0.1 2.2E-06 48.6 6.9 56 238-297 26-83 (377)
45 PRK10504 putative transporter; 94.5 1.1 2.3E-05 44.2 14.4 81 210-295 256-340 (471)
46 PRK10054 putative transporter; 94.5 0.08 1.7E-06 51.4 6.3 64 215-278 7-73 (395)
47 TIGR00897 2A0118 polyol permea 94.5 0.068 1.5E-06 51.8 5.7 71 209-279 216-288 (402)
48 KOG2533 Permease of the major 94.4 0.17 3.6E-06 51.4 8.5 95 206-302 264-364 (495)
49 PRK03699 putative transporter; 94.4 0.093 2E-06 50.6 6.4 81 215-299 7-89 (394)
50 TIGR00900 2A0121 H+ Antiporter 94.4 0.051 1.1E-06 50.5 4.5 62 217-278 1-64 (365)
51 TIGR00885 fucP L-fucose:H+ sym 94.2 0.078 1.7E-06 52.0 5.5 71 208-278 225-299 (410)
52 PRK03893 putative sialic acid 94.2 0.096 2.1E-06 51.8 6.2 80 216-299 21-102 (496)
53 TIGR00924 yjdL_sub1_fam amino 94.2 0.087 1.9E-06 52.8 5.8 84 216-303 11-100 (475)
54 PRK11663 regulatory protein Uh 94.1 0.14 3.1E-06 50.2 7.1 80 216-299 24-105 (434)
55 PRK11195 lysophospholipid tran 94.1 0.086 1.9E-06 51.2 5.5 77 214-294 2-80 (393)
56 PRK03699 putative transporter; 93.9 0.1 2.3E-06 50.3 5.6 64 215-278 205-271 (394)
57 TIGR01272 gluP glucose/galacto 93.8 0.13 2.9E-06 48.5 6.0 69 210-278 135-208 (310)
58 PF06609 TRI12: Fungal trichot 93.7 0.2 4.4E-06 51.9 7.6 93 213-309 38-135 (599)
59 cd06174 MFS The Major Facilita 93.6 0.15 3.2E-06 46.8 5.9 79 218-300 2-82 (352)
60 PRK10133 L-fucose transporter; 93.5 0.11 2.4E-06 51.4 5.2 70 209-278 252-325 (438)
61 TIGR00891 2A0112 putative sial 93.4 0.19 4.1E-06 47.6 6.4 58 238-299 35-94 (405)
62 PRK12307 putative sialic acid 93.4 0.13 2.7E-06 49.8 5.3 72 207-278 220-296 (426)
63 TIGR02332 HpaX 4-hydroxyphenyl 93.4 0.16 3.4E-06 49.7 5.9 69 210-278 237-309 (412)
64 PRK03545 putative arabinose tr 93.3 0.16 3.5E-06 48.7 5.9 58 238-299 32-91 (390)
65 KOG2532 Permease of the major 93.3 0.075 1.6E-06 53.5 3.6 95 204-299 247-350 (466)
66 PRK11551 putative 3-hydroxyphe 93.3 0.19 4.1E-06 48.3 6.2 62 217-278 222-285 (406)
67 PRK11128 putative 3-phenylprop 93.3 0.19 4.1E-06 48.3 6.2 91 207-301 197-289 (382)
68 TIGR00883 2A0106 metabolite-pr 93.3 0.19 4E-06 47.2 6.1 72 207-278 209-285 (394)
69 PRK03633 putative MFS family t 93.3 0.19 4.1E-06 48.2 6.2 71 207-278 192-265 (381)
70 TIGR00899 2A0120 sugar efflux 93.2 0.27 5.9E-06 46.2 7.2 69 210-278 194-265 (375)
71 TIGR00881 2A0104 phosphoglycer 93.2 0.17 3.6E-06 47.2 5.6 59 239-301 19-79 (379)
72 TIGR00710 efflux_Bcr_CflA drug 93.2 0.14 3.1E-06 48.2 5.1 71 208-278 199-272 (385)
73 KOG0569 Permease of the major 93.1 1.2 2.6E-05 45.1 11.8 94 204-302 254-355 (485)
74 PRK10473 multidrug efflux syst 93.0 0.22 4.8E-06 47.7 6.2 70 209-278 197-269 (392)
75 TIGR02332 HpaX 4-hydroxyphenyl 92.8 0.21 4.7E-06 48.7 6.0 56 242-301 35-92 (412)
76 TIGR00889 2A0110 nucleoside tr 92.6 0.1 2.3E-06 51.2 3.5 85 208-296 201-295 (418)
77 TIGR00897 2A0118 polyol permea 92.6 0.19 4.1E-06 48.7 5.2 79 213-296 12-92 (402)
78 PRK09556 uhpT sugar phosphate 92.4 0.41 8.9E-06 47.4 7.5 66 215-280 25-96 (467)
79 PLN00028 nitrate transmembrane 92.3 0.27 5.9E-06 49.1 6.1 40 239-278 60-101 (476)
80 PRK15034 nitrate/nitrite trans 92.2 0.2 4.4E-06 50.4 4.9 70 208-278 245-316 (462)
81 PRK11273 glpT sn-glycerol-3-ph 92.2 0.35 7.5E-06 47.7 6.6 49 246-298 59-109 (452)
82 TIGR00892 2A0113 monocarboxyla 92.1 0.34 7.3E-06 48.1 6.4 57 238-298 42-100 (455)
83 PRK10473 multidrug efflux syst 92.1 0.31 6.7E-06 46.7 6.0 64 233-300 21-86 (392)
84 PRK15034 nitrate/nitrite trans 92.0 0.52 1.1E-05 47.5 7.6 84 212-299 31-117 (462)
85 PRK11043 putative transporter; 91.9 0.36 7.8E-06 46.4 6.2 61 233-297 24-86 (401)
86 PRK10489 enterobactin exporter 91.8 0.13 2.8E-06 49.9 3.0 70 211-281 13-85 (417)
87 PRK05122 major facilitator sup 91.8 0.36 7.7E-06 46.3 6.1 47 241-291 42-90 (399)
88 TIGR00712 glpT glycerol-3-phos 91.8 0.55 1.2E-05 46.0 7.4 39 241-279 52-92 (438)
89 cd06174 MFS The Major Facilita 91.7 0.44 9.5E-06 43.7 6.3 83 215-300 175-260 (352)
90 TIGR00711 efflux_EmrB drug res 91.6 0.32 7E-06 47.7 5.6 62 236-301 23-86 (485)
91 PRK12307 putative sialic acid 91.5 0.46 9.9E-06 45.9 6.5 58 239-300 42-101 (426)
92 PF13347 MFS_2: MFS/sugar tran 91.2 0.58 1.3E-05 45.7 6.9 89 207-299 217-307 (428)
93 TIGR00893 2A0114 d-galactonate 91.0 0.21 4.6E-06 46.5 3.5 41 239-279 18-60 (399)
94 PRK15402 multidrug efflux syst 90.8 0.39 8.5E-06 46.3 5.2 71 208-278 208-281 (406)
95 PRK09584 tppB putative tripept 90.8 0.42 9.1E-06 48.2 5.6 89 210-302 15-108 (500)
96 PRK11646 multidrug resistance 90.8 0.56 1.2E-05 45.6 6.3 54 241-298 37-92 (400)
97 PF07690 MFS_1: Major Facilita 90.7 0.29 6.3E-06 45.2 4.1 55 240-298 22-78 (352)
98 PRK05122 major facilitator sup 90.7 0.76 1.7E-05 44.0 7.1 38 241-278 242-279 (399)
99 TIGR00895 2A0115 benzoate tran 90.7 0.57 1.2E-05 44.0 6.1 58 238-299 40-99 (398)
100 PRK09705 cynX putative cyanate 90.3 0.79 1.7E-05 44.3 6.9 86 216-305 7-97 (393)
101 PRK11102 bicyclomycin/multidru 90.3 0.44 9.6E-06 45.0 5.0 61 234-298 10-72 (377)
102 TIGR00901 2A0125 AmpG-related 90.2 0.42 9.1E-06 45.0 4.8 71 208-278 199-275 (356)
103 TIGR00903 2A0129 major facilit 90.2 0.45 9.8E-06 46.0 5.0 68 208-278 185-253 (368)
104 PRK11102 bicyclomycin/multidru 90.1 0.55 1.2E-05 44.4 5.5 71 208-278 187-260 (377)
105 PRK08633 2-acyl-glycerophospho 90.1 0.51 1.1E-05 51.9 5.9 69 210-278 4-77 (1146)
106 COG2814 AraJ Arabinose efflux 89.9 1 2.2E-05 44.4 7.2 71 207-278 203-276 (394)
107 PRK14995 methyl viologen resis 89.9 0.61 1.3E-05 46.7 5.8 59 238-300 29-89 (495)
108 TIGR00895 2A0115 benzoate tran 89.8 0.77 1.7E-05 43.1 6.2 64 215-278 250-315 (398)
109 PRK10406 alpha-ketoglutarate t 89.7 0.68 1.5E-05 45.3 5.9 72 207-278 234-309 (432)
110 TIGR00882 2A0105 oligosacchari 89.0 0.65 1.4E-05 44.7 5.1 87 207-298 207-300 (396)
111 PRK12382 putative transporter; 88.8 1.3 2.8E-05 42.3 7.0 38 241-278 242-279 (392)
112 COG2814 AraJ Arabinose efflux 88.7 1.1 2.3E-05 44.3 6.4 85 215-303 13-99 (394)
113 PRK10133 L-fucose transporter; 88.3 0.9 1.9E-05 44.9 5.7 80 216-299 27-108 (438)
114 PRK15075 citrate-proton sympor 87.6 1.1 2.4E-05 43.8 5.9 67 212-278 234-304 (434)
115 PRK08633 2-acyl-glycerophospho 87.5 1.1 2.4E-05 49.3 6.3 71 208-278 225-299 (1146)
116 TIGR00792 gph sugar (Glycoside 87.3 0.56 1.2E-05 45.4 3.5 84 208-296 215-301 (437)
117 TIGR00899 2A0120 sugar efflux 87.3 0.96 2.1E-05 42.5 5.0 38 241-278 24-63 (375)
118 PRK11551 putative 3-hydroxyphe 87.3 1.6 3.5E-05 41.8 6.6 40 239-278 39-80 (406)
119 PRK15462 dipeptide/tripeptide 86.9 0.88 1.9E-05 46.2 4.7 54 243-300 38-94 (493)
120 TIGR00879 SP MFS transporter, 86.7 1.1 2.3E-05 43.1 5.1 45 251-299 74-118 (481)
121 TIGR02718 sider_RhtX_FptX side 86.2 1.1 2.3E-05 43.0 4.8 72 207-278 200-274 (390)
122 PTZ00207 hypothetical protein; 86.1 1.1 2.3E-05 46.7 4.9 81 217-302 27-111 (591)
123 PRK10207 dipeptide/tripeptide 85.4 1.4 3E-05 44.4 5.3 57 242-302 42-101 (489)
124 KOG0254 Predicted transporter 85.3 0.88 1.9E-05 45.9 3.8 56 251-310 92-147 (513)
125 TIGR00885 fucP L-fucose:H+ sym 85.2 1.7 3.6E-05 42.6 5.7 81 216-301 4-87 (410)
126 PRK10077 xylE D-xylose transpo 85.2 1.7 3.7E-05 42.7 5.7 45 251-299 58-102 (479)
127 PRK09874 drug efflux system pr 84.9 2.1 4.5E-05 40.8 6.0 27 252-278 262-288 (408)
128 PRK03893 putative sialic acid 84.8 1.5 3.2E-05 43.3 5.1 43 236-278 296-341 (496)
129 PRK10213 nepI ribonucleoside t 84.8 2.8 6.2E-05 40.5 7.0 68 208-275 209-279 (394)
130 PRK10489 enterobactin exporter 84.7 2.8 6E-05 40.5 6.9 85 209-298 218-305 (417)
131 PRK11043 putative transporter; 84.5 1.5 3.2E-05 42.1 4.9 72 207-278 195-268 (401)
132 TIGR00896 CynX cyanate transpo 84.0 1.7 3.7E-05 40.9 5.0 56 238-297 23-80 (355)
133 TIGR00792 gph sugar (Glycoside 83.7 1.6 3.6E-05 42.1 4.8 56 244-299 29-87 (437)
134 PRK11902 ampG muropeptide tran 83.5 1.7 3.8E-05 41.9 4.9 72 207-278 201-276 (402)
135 PRK06814 acylglycerophosphoeth 82.9 15 0.00034 40.6 12.6 72 207-278 217-291 (1140)
136 KOG4686 Predicted sugar transp 82.4 2.5 5.4E-05 40.5 5.1 83 214-300 263-349 (459)
137 TIGR01301 GPH_sucrose GPH fami 81.7 2.7 5.9E-05 42.5 5.6 64 234-301 23-93 (477)
138 TIGR00898 2A0119 cation transp 81.6 1.6 3.4E-05 43.4 3.8 46 251-300 130-175 (505)
139 PRK09952 shikimate transporter 81.0 3 6.6E-05 41.0 5.6 68 211-278 245-316 (438)
140 PRK11010 ampG muropeptide tran 80.1 2.8 6E-05 42.1 5.1 70 208-278 215-289 (491)
141 TIGR00903 2A0129 major facilit 79.9 2.7 5.9E-05 40.6 4.8 41 238-278 14-56 (368)
142 TIGR00805 oat sodium-independe 79.7 1.6 3.5E-05 45.6 3.3 72 207-278 322-397 (633)
143 PRK10642 proline/glycine betai 79.4 4.9 0.00011 40.1 6.6 41 238-278 273-316 (490)
144 PF00083 Sugar_tr: Sugar (and 79.0 0.072 1.6E-06 52.0 -6.6 73 206-278 239-316 (451)
145 PRK15011 sugar efflux transpor 79.0 4 8.6E-05 39.3 5.6 42 237-278 238-282 (393)
146 COG2271 UhpC Sugar phosphate p 78.9 7.1 0.00015 39.0 7.3 64 241-308 55-120 (448)
147 COG3104 PTR2 Dipeptide/tripept 78.8 2.4 5.2E-05 43.0 4.1 88 209-303 23-113 (498)
148 KOG0255 Synaptic vesicle trans 78.5 2.3 5E-05 42.6 3.9 51 251-305 121-171 (521)
149 PRK09952 shikimate transporter 78.1 4.8 0.00011 39.5 6.0 42 259-304 75-116 (438)
150 PRK10077 xylE D-xylose transpo 77.3 2.7 5.9E-05 41.2 4.0 55 239-297 295-351 (479)
151 TIGR00891 2A0112 putative sial 76.4 7.2 0.00016 36.7 6.5 36 243-278 267-304 (405)
152 PRK09848 glucuronide transport 75.2 4.3 9.2E-05 39.8 4.7 35 251-285 47-81 (448)
153 PRK15011 sugar efflux transpor 72.5 9.9 0.00021 36.5 6.4 37 241-278 42-81 (393)
154 TIGR00880 2_A_01_02 Multidrug 71.9 2.3 5.1E-05 33.1 1.6 24 255-278 5-28 (141)
155 PRK10642 proline/glycine betai 71.8 6.3 0.00014 39.3 5.1 46 255-304 64-109 (490)
156 KOG0252 Inorganic phosphate tr 69.7 2.3 4.9E-05 43.0 1.3 30 256-285 92-121 (538)
157 KOG0254 Predicted transporter 68.7 15 0.00032 37.0 7.0 90 211-305 291-382 (513)
158 TIGR00805 oat sodium-independe 68.4 2 4.3E-05 44.9 0.6 60 239-302 57-118 (633)
159 PRK10054 putative transporter; 67.7 17 0.00037 35.0 7.0 70 209-278 200-274 (395)
160 PRK10429 melibiose:sodium symp 67.3 4.1 8.9E-05 40.5 2.6 70 209-278 225-296 (473)
161 PRK06814 acylglycerophosphoeth 67.2 7.8 0.00017 42.9 5.0 71 209-279 5-83 (1140)
162 PF00083 Sugar_tr: Sugar (and 67.0 1.5 3.3E-05 42.7 -0.6 49 251-303 49-97 (451)
163 PRK09669 putative symporter Ya 67.0 5 0.00011 39.4 3.1 71 207-278 221-294 (444)
164 PRK11010 ampG muropeptide tran 66.1 10 0.00022 38.1 5.2 65 227-296 23-95 (491)
165 TIGR00887 2A0109 phosphate:H+ 65.9 5.9 0.00013 39.6 3.4 28 251-278 59-86 (502)
166 TIGR01299 synapt_SV2 synaptic 65.7 5.7 0.00012 42.5 3.4 25 254-278 601-625 (742)
167 PF12832 MFS_1_like: MFS_1 lik 65.3 8.4 0.00018 28.8 3.4 55 221-278 9-65 (77)
168 PRK11128 putative 3-phenylprop 64.7 9 0.0002 36.6 4.4 48 238-285 27-76 (382)
169 KOG2615 Permease of the major 64.3 8.8 0.00019 38.1 4.1 55 252-310 72-126 (451)
170 PF11700 ATG22: Vacuole efflux 64.1 9.7 0.00021 38.5 4.6 71 207-278 273-347 (477)
171 PRK09848 glucuronide transport 63.9 6.3 0.00014 38.6 3.1 88 208-299 221-311 (448)
172 PRK10406 alpha-ketoglutarate t 63.9 5 0.00011 39.2 2.4 38 259-300 74-111 (432)
173 TIGR00889 2A0110 nucleoside tr 63.2 16 0.00034 35.8 5.8 36 243-278 31-68 (418)
174 PRK15075 citrate-proton sympor 63.1 9.1 0.0002 37.3 4.1 39 262-304 70-108 (434)
175 TIGR00902 2A0127 phenyl propri 60.0 12 0.00026 35.7 4.3 43 236-278 25-69 (382)
176 KOG0569 Permease of the major 59.3 10 0.00022 38.6 3.7 27 252-278 64-90 (485)
177 TIGR00883 2A0106 metabolite-pr 58.9 8.8 0.00019 35.7 3.0 39 261-303 48-86 (394)
178 COG2223 NarK Nitrate/nitrite t 58.9 16 0.00034 36.4 4.8 56 243-303 42-100 (417)
179 PRK11652 emrD multidrug resist 58.6 16 0.00035 34.8 4.9 69 208-279 200-270 (394)
180 PRK09669 putative symporter Ya 58.6 17 0.00037 35.5 5.2 46 251-296 48-94 (444)
181 PF05977 MFS_3: Transmembrane 57.6 14 0.0003 37.8 4.4 70 208-290 3-83 (524)
182 PRK11902 ampG muropeptide tran 55.9 16 0.00036 35.0 4.5 65 228-298 11-84 (402)
183 PRK10429 melibiose:sodium symp 54.7 24 0.00051 35.0 5.5 46 251-296 45-91 (473)
184 TIGR00901 2A0125 AmpG-related 52.8 19 0.00042 33.6 4.3 58 239-297 12-72 (356)
185 PRK11462 putative transporter; 52.5 23 0.00051 35.1 5.0 71 208-278 221-293 (460)
186 PF01306 LacY_symp: LacY proto 51.3 19 0.00041 35.8 4.1 82 212-299 4-92 (412)
187 KOG0253 Synaptic vesicle trans 50.2 31 0.00068 34.4 5.2 39 254-296 387-425 (528)
188 TIGR00880 2_A_01_02 Multidrug 48.4 49 0.0011 25.3 5.4 33 3-35 79-112 (141)
189 COG0738 FucP Fucose permease [ 47.0 70 0.0015 31.9 7.1 75 207-285 228-305 (422)
190 PRK15403 multidrug efflux syst 45.6 49 0.0011 32.1 6.0 41 208-248 211-252 (413)
191 PF03825 Nuc_H_symport: Nucleo 45.5 54 0.0012 32.2 6.3 60 216-278 6-67 (400)
192 TIGR00894 2A0114euk Na(+)-depe 45.0 22 0.00048 34.9 3.5 28 252-279 80-107 (465)
193 PF03825 Nuc_H_symport: Nucleo 43.8 40 0.00086 33.1 5.0 93 207-302 199-293 (400)
194 KOG4050 Glutamate transporter 43.4 25 0.00054 30.4 3.0 67 249-315 74-140 (188)
195 COG2270 Permeases of the major 43.3 37 0.00081 34.0 4.7 35 244-278 282-318 (438)
196 KOG3764 Vesicular amine transp 40.8 38 0.00082 33.9 4.2 61 2-64 186-251 (464)
197 PF06609 TRI12: Fungal trichot 36.8 5.2E+02 0.011 27.1 13.9 24 253-276 354-377 (599)
198 PF06813 Nodulin-like: Nodulin 36.5 70 0.0015 29.5 5.1 68 224-297 9-81 (250)
199 PF13347 MFS_2: MFS/sugar tran 35.3 27 0.00058 34.0 2.3 50 251-300 40-90 (428)
200 TIGR00806 rfc RFC reduced fola 33.4 1.1E+02 0.0023 31.5 6.2 61 218-278 25-92 (511)
201 PRK11646 multidrug resistance 33.3 94 0.002 30.0 5.8 18 208-225 201-218 (400)
202 PRK11462 putative transporter; 31.8 52 0.0011 32.7 3.8 46 252-297 49-95 (460)
203 KOG2563 Permease of the major 28.7 26 0.00056 35.4 1.0 72 207-278 258-331 (480)
204 KOG2325 Predicted transporter/ 27.7 28 0.0006 35.5 1.0 83 204-286 374-458 (488)
205 COG2807 CynX Cyanate permease 26.0 1.7E+02 0.0038 28.9 6.0 84 210-297 203-289 (395)
206 COG2211 MelB Na+/melibiose sym 25.5 99 0.0021 31.4 4.4 30 264-297 288-317 (467)
207 TIGR00788 fbt folate/biopterin 23.6 1.4E+02 0.0031 29.7 5.2 59 6-65 383-447 (468)
208 KOG2504 Monocarboxylate transp 23.1 1.2E+02 0.0026 30.9 4.7 71 215-285 132-203 (509)
209 PF11460 DUF3007: Protein of u 22.3 1.2E+02 0.0027 24.2 3.5 55 7-65 2-60 (104)
210 PF09490 CbtA: Probable cobalt 22.1 6E+02 0.013 23.1 9.9 57 9-68 73-133 (227)
211 KOG0252 Inorganic phosphate tr 20.9 2.7E+02 0.0058 28.7 6.3 82 210-301 305-397 (538)
212 PRK11195 lysophospholipid tran 20.3 3.2E+02 0.0069 26.2 6.8 67 210-276 200-269 (393)
213 PF05631 DUF791: Protein of un 20.1 2.9E+02 0.0063 27.0 6.3 59 216-278 38-99 (354)
214 COG0477 ProP Permeases of the 20.1 2.7E+02 0.0059 23.6 5.8 28 251-278 42-69 (338)
No 1
>PTZ00207 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=327.39 Aligned_cols=268 Identities=19% Similarity=0.278 Sum_probs=205.8
Q ss_pred ccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeeeccCCCCC------CCCCCCc
Q 021109 2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG------EDSSEHG 75 (317)
Q Consensus 2 ~nFP~~RG~vvgi~k~~~GLSaaifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~------~~~~~~~ 75 (317)
+|||++||+++|+.|++.|+|++++++++.+++.+|.+.+++++++++.+++++++.++|.+|++.. .+++|+.
T Consensus 147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999997642 1344444
Q ss_pred -----------------chhhHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH-HHHhhc-cccccccccccccc
Q 021109 76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK 136 (317)
Q Consensus 76 -----------------~f~~~~~~~~~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~-~ll~~p-~~i~~~~~~~~~~~ 136 (317)
+|..++.+++++++|+++++++++|++++++.+..++++++ ++++.| +++|++. ++...
T Consensus 227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~ 304 (591)
T PTZ00207 227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKR 304 (591)
T ss_pred HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCC
Confidence 89999999999999999999999999999999999999888 666667 6666644 33211
Q ss_pred cccccCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCcchhHHHHHhccCccccccCCCCCCCCCHHhhhhhhH
Q 021109 137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~ll~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~~~d~t~~~~l~t~~ 216 (317)
.+ ++ +++ +..+. . + .+.+. ++++ .++. +.+.++ +.|++++ |++|++++.|
T Consensus 305 ~~----~~-------~~~-~~~~~--~-~--~~~~~-----~~~~-~~~~----~~~~~~-~~P~~~~--t~~q~l~~~d 354 (591)
T PTZ00207 305 PH----DD-------SDG-KAKEH--V-E--AGEEV-----SAAE-DKVV----ETDVDY-IAPQFQE--TFIEGLKTAR 354 (591)
T ss_pred cC----CC-------ccc-ccccc--c-c--ccccc-----cccc-cccc----cccccC-CCCCCcc--hHHHHHhchh
Confidence 10 00 000 00000 0 0 00000 0000 0000 011222 2388887 9999999999
Q ss_pred HHHHHHHHHHhhhhhheeecchhHHHHHh-CC-Cch--hh-HHHHHhhhhcccccccccchhhhhccCC----CcchH--
Q 021109 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVSSQW----YPLCC-- 285 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~-~~~--~~-~vsl~si~n~~GRl~~G~lsD~~~~~~~----~~R~~-- 285 (317)
||++|+.++|+.|+|++++||++||++|+ |+ .+. +. +|+++|+||++||+++|++| .+.+|++ +|||.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l 433 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIAL 433 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHH
Confidence 99999999999999999999999999999 77 343 33 89999999999999999998 7777666 99999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 021109 286 DCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~ 303 (317)
.++++ ++++|++++...
T Consensus 434 ~~~~~-~~~~~lll~~~~ 450 (591)
T PTZ00207 434 FIPSV-CIITMLTLFLTL 450 (591)
T ss_pred HHHHH-HHHHHHHHHHHC
Confidence 45555 889888776553
No 2
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.96 E-value=3.8e-29 Score=229.73 Aligned_cols=127 Identities=44% Similarity=0.791 Sum_probs=120.6
Q ss_pred CccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeeeccCCC--CCCCCCCCcchh
Q 021109 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA--SGEDSSEHGHFV 78 (317)
Q Consensus 1 v~nFP~~RG~vvgi~k~~~GLSaaifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~--~~~~~~~~~~f~ 78 (317)
+||||+|||+|+|++|+|+||||+||+|+|++||++|+++|++|+|++|.++++++++++|++|++ .+++++|+++|.
T Consensus 122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~ 201 (250)
T PF06813_consen 122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL 201 (250)
T ss_pred HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999974 345677888999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhhcccccc
Q 021109 79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV 127 (317)
Q Consensus 79 ~~~~~~~~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~ 127 (317)
..+.+++++++|+++.+++++++++++..++..+++++++|++|++||+
T Consensus 202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV 250 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999999985
No 3
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.21 E-value=1.2e-05 Score=75.25 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=56.7
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.++++++|.+++.+++.......+.+...++.++++.++ .....++.++.+.+||+..|.++||++||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3467888899999988887776666555565666667777654 34678899999999999999999999986
No 4
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.89 E-value=9.6e-05 Score=74.99 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=64.6
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchH-
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC- 285 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~- 285 (317)
.+.++++.||.+.+...+....-.+-.--+...+++.+++ +++.++|++++.|.+||++.|++.|+-..+ +.+
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~----~~~~ 367 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR----ALVL 367 (509)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc----hHHH
Confidence 5889999999998877777666666666677777788876 467899999999999999999999988732 444
Q ss_pred -HHHHHHHHHHHH
Q 021109 286 -DCTAWSLLWRHI 297 (317)
Q Consensus 286 -~~~~~~~~~~~l 297 (317)
.++.+...++.+
T Consensus 368 ~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 368 FLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHH
Confidence 445554444443
No 5
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.36 E-value=0.0018 Score=60.54 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=58.2
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
+.++.++++++|.+++..++.......+........++ .+.+. .....++..+++.+|++..|.++||++||+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788999999999998888777776666666666654 55543 356778888999999999999999999874
No 6
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.29 E-value=0.0025 Score=60.09 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=55.5
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.++++++|.+.+.+++..+....+.+......++ ++.++ ...+.++..+.+.+||+++|.++||+++|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~ 291 (366)
T TIGR00886 217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA 291 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc
Confidence 34678899999999988887776655555556666654 45543 34577888899999999999999999987
No 7
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.20 E-value=0.002 Score=63.94 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=49.7
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhh
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY 275 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~ 275 (317)
.+.++++.||.+.+..++...+-.+.......+.++.+.+. .....++.++.+.++|+..|.++|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36889999998887665544443444455566667777653 45788899999999999999999973
No 8
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.15 E-value=0.00084 Score=67.08 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=57.9
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCC
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWY 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~ 281 (317)
.+++.++++.+|++++.+++..+....+.+.+....+ ..|.+ ++..+.++..+++.+||+++|+++||++||++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~ 321 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM 321 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc
Confidence 3567889999999999887777666655555555544 45665 345688899999999999999999999987543
No 9
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.96 E-value=0.011 Score=58.29 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=58.4
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPL 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R 283 (317)
.+++.++++.+|.+++..++.......+..-+..+.+ .++.+. .....++..+++.+|+++.|+++||+.+|+...|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~ 332 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 5789999999999998887766655555555555554 456653 3467778889999999999999999987655544
Q ss_pred h
Q 021109 284 C 284 (317)
Q Consensus 284 ~ 284 (317)
.
T Consensus 333 ~ 333 (465)
T TIGR00894 333 T 333 (465)
T ss_pred H
Confidence 4
No 10
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.87 E-value=0.015 Score=57.03 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++++.+|.+.+.+++....-..+..-...+. +..|.+. +....+++.+++.+||++.|.++||+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 309 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG 309 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence 56788999987765543332211222233333 3456553 45678889999999999999999999543
No 11
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.81 E-value=0.013 Score=54.80 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
...+.++++.+|.+.+..++.......+........ +.++.+. .....++..+.+.+|+++.|.++||..+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 346788999999988877665554433333344444 3456553 356778889999999999999999876543
No 12
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.79 E-value=0.015 Score=57.36 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+|++.+|.+++.+++....-..+..-.....++ .+.+ +.....++.++++.+|+++.|+++||++++
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~ 319 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 319 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 36788999998888776654433334445555554 4554 334566788899999999999999999654
No 13
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.63 E-value=0.028 Score=55.24 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
+.++++.+|.+.+..++....-.........+.++ .|.+. +....++.++.+.+|++..|.++||+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 46788999999776665543322333445555555 35543 456778899999999999999999997653
No 14
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.50 E-value=0.039 Score=54.22 Aligned_cols=87 Identities=9% Similarity=-0.133 Sum_probs=55.0
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
.+.+++++||...+..++................+. +|.+. ........++...+|+++.|.+.||++|| +..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----~~~ 324 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----KLV 324 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----HHH
Confidence 467788888887665554433322233334445554 45543 34567778889999999999999999876 334
Q ss_pred HHHHHHHHHHHHHH
Q 021109 286 DCTAWSLLWRHILF 299 (317)
Q Consensus 286 ~~~~~~~~~~~l~~ 299 (317)
.++..+++++.+++
T Consensus 325 ~~g~~~~~~~~~~~ 338 (485)
T TIGR00711 325 TIGLILYAVGFYWR 338 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 15
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.28 E-value=0.0096 Score=56.36 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++.+|++.+|.+.+.+++..+.-..+......+.++.+.+. .....++..+...+||+..|.++||++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~ 262 (355)
T TIGR00896 190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ 262 (355)
T ss_pred CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence 356788999998776665544443444455666677776653 35688899999999999999999999544
No 16
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.13 E-value=0.0098 Score=57.63 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=51.6
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.++++++|.+.+.+++....-..+.+-...+.++.|.+. .....++.++++.+||+..|.++||++||
T Consensus 199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~ 270 (393)
T PRK09705 199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR 270 (393)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 45677888998877665554433334445566666666653 45688999999999999999999999876
No 17
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.07 E-value=0.012 Score=55.45 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
.||..++.+++......++..-..+ +.++++.+. .....++..+...++.+.+|.++||++|| |...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~ 77 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR----YTTTLSLLLL 77 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHH
Confidence 5888888888776666665555554 677888764 35688899999999999999999999987 4555555555
Q ss_pred HHHHHHHHhh
Q 021109 293 LWRHILFDGS 302 (317)
Q Consensus 293 ~~~~l~~~~~ 302 (317)
+++.+++...
T Consensus 78 ~i~~~~~~~~ 87 (366)
T TIGR00886 78 AIPCLWAGLA 87 (366)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 18
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=95.95 E-value=0.059 Score=51.86 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+|.+++.+++.......+..-...+.+..|.+. .....++..+.+.+|+++.|.++||++||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 349 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR 349 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34444444433322222223333444556667654 34677788899999999999999999986
No 19
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.91 E-value=0.013 Score=56.99 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=51.3
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+..++++||.+++.+++...+--.+..-.....++ +|.+. ..+..++..+...++++.+|.++||++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r 76 (420)
T PRK09528 4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK 76 (420)
T ss_pred chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 356778899999887777665432333333333343 67653 46789999999999999999999999987
No 20
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.82 E-value=0.034 Score=51.72 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=48.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++.+|++.+|.+.+..++..........+..+. .++ ++.+. .....++.++.+.+|++..|.++||.+|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM 277 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 4567888899988877666555554444233333 343 45543 34567778889999999999999988775
No 21
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=95.65 E-value=0.33 Score=48.66 Aligned_cols=70 Identities=10% Similarity=-0.098 Sum_probs=43.4
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.+|++.|+...+..++...+-...........|. .|++ ++.......++...+|.+..|.+.||+++|
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~ 325 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR 325 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 456677777766655544333211112222333343 4554 345667778889999999999999999875
No 22
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.64 E-value=0.021 Score=56.71 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=51.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++++.+|.+++..++..+.-..+..-.....+ .+|.+. +....++..+++.+|++..|+++||++||
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r 324 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR 324 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4789999999998887765554333333444443 456653 45677888899999999999999999887
No 23
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.025 Score=55.71 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=70.3
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPL 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R 283 (317)
..+...+++|-|.+-+.++...|+=.-+.+-.++..++. +.+ ++.....+...-+.+-|-..|.+|||++.+ |
T Consensus 210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~----r 285 (417)
T COG2223 210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR----R 285 (417)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch----h
Confidence 345677799999999999999998777778788877764 444 344789999999999999999999999987 6
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 021109 284 CCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~ 301 (317)
........++++..+...
T Consensus 286 v~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 286 VTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 665555555555544433
No 24
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.61 E-value=0.022 Score=55.25 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhhh---heeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAG---VTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW 290 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~G---l~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~ 290 (317)
+.|.++...++....+ .+....+.++.++++.+. ....+++..+...++++..|.++||++|| |.+..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr----~~~~~~~~ 93 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR----YVVILFAV 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH----HHHHHHHH
Confidence 4444455444433332 234455677888888764 45788899999999999999999999997 65555555
Q ss_pred HHHHHHHHHHhh
Q 021109 291 SLLWRHILFDGS 302 (317)
Q Consensus 291 ~~~~~~l~~~~~ 302 (317)
+.+++.++....
T Consensus 94 ~~~~~~~~~~~~ 105 (394)
T PRK10213 94 LLTLSCLLVSFA 105 (394)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 25
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.59 E-value=0.026 Score=54.13 Aligned_cols=82 Identities=10% Similarity=-0.108 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW 290 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~ 290 (317)
.++++|.++...++....--.+..-+..+.++++.++ .....+...+.+.++.+.+|.++||++|| |...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k----~~~~~~~~ 79 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN----RSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHH
Confidence 3567888887666543332333445666667777753 45788899999999999999999999998 55544444
Q ss_pred HHHHHHHH
Q 021109 291 SLLWRHIL 298 (317)
Q Consensus 291 ~~~~~~l~ 298 (317)
+.+++.+.
T Consensus 80 ~~~~~~~~ 87 (381)
T PRK03633 80 IFAAGCAG 87 (381)
T ss_pred HHHHHHHH
Confidence 44444433
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=95.35 E-value=0.029 Score=51.97 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=44.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHHhCCC-ch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN-DT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~~~~-~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+++..+++.+|.+++.+++....-.........+ .+.++.+ .. ....++.++...++++..|.++||++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR 273 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4567788888855555444432222233333333 3455655 22 3457888888889999999999998875
No 27
>PRK10504 putative transporter; Provisional
Probab=95.19 E-value=0.036 Score=54.61 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS 291 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~ 291 (317)
.+.+|++++.+++......++......+.+++|.+.. ...++...+...++.+.+|.++|+++|| |.......+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r----~~~~~~~~~ 84 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR----NIFFTAIVL 84 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHH
Confidence 3468888888877665555566678888888888643 4566777888899999999999999987 554444444
Q ss_pred HHHHHH
Q 021109 292 LLWRHI 297 (317)
Q Consensus 292 ~~~~~l 297 (317)
++++.+
T Consensus 85 ~~~~~~ 90 (471)
T PRK10504 85 FTLGSL 90 (471)
T ss_pred HHHHHH
Confidence 444443
No 28
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.12 Score=51.14 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=47.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHH--HHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 282 (317)
-.++++--|++-++.+..--.=. -|+.=++++ |..+++ ++...++++=++...|-++.|++|||+-|.++.|
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 35778888988776654322111 123333443 333554 4567899999999999999999999997554444
No 29
>TIGR00898 2A0119 cation transport protein.
Probab=95.11 E-value=0.13 Score=51.24 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred CCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.+++++++.+|...+...+.+.......+......+.++.+ ......+.++....|+++.|.++||++||
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr 385 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRR 385 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4678999999998887766554443222111111111222222 22334466777888999999999999986
No 30
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.03 E-value=0.032 Score=53.76 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhhhh-hheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 214 KADFWLLWFVYFLGVGA-GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~-Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
+++||.+....++..++ +.....-...+.+.++.+. ..+.+++.++...++++.+|.++||++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~ 69 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK 69 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899987555554443 4443322223344567653 457899999999999999999999999983
No 31
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.00 E-value=0.066 Score=51.36 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHH
Q 021109 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLW 294 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~ 294 (317)
.|++.....++.....++......+.++++.+. .....++..+...++.+.+|.++||++|| |.+.++..+.++
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr----~~~~~~~~~~~~ 85 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR----PVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh----HHHHHHHHHHHH
Confidence 344444444444444455566777888888764 35678899999999999999999999997 444444444444
Q ss_pred HHH
Q 021109 295 RHI 297 (317)
Q Consensus 295 ~~l 297 (317)
+.+
T Consensus 86 ~~~ 88 (394)
T PRK11652 86 GTL 88 (394)
T ss_pred HHH
Confidence 443
No 32
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.99 E-value=0.061 Score=52.59 Aligned_cols=68 Identities=9% Similarity=-0.084 Sum_probs=49.1
Q ss_pred hhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109 230 AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 230 ~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~ 301 (317)
+..++.-.+.+|.++++.+. ....++++.++.++|.+.+|.++||++|| |.+..+..+.+++.++...
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR----PVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch----HHHHHHHHHHHHHHHHHHH
Confidence 44556666777888888763 45688999999999999999999999998 4444444444445444333
No 33
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.97 E-value=0.26 Score=49.31 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=19.8
Q ss_pred HHHHhhhhcccccccccchhhhhcc
Q 021109 254 LCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+..+++..|.+++|+++||++||
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR 365 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRK 365 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcch
Confidence 3444556677999999999999997
No 34
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.95 E-value=0.072 Score=51.16 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=48.1
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.++++.+|.++...+++...-....+......+ ..|.+. .....++.++++.+||+..|.++||++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~ 265 (382)
T PRK10091 193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL 265 (382)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence 45678889998877666544322222222333333 356553 35678899999999999999999999876
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=94.86 E-value=0.083 Score=49.86 Aligned_cols=81 Identities=21% Similarity=0.126 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhhh-heeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAG-VTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~G-l~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
.++.....+.+..+.+ .++......+.++++.++ .....++..+.+.++.+.+|.++||++|| |.+..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r----~~~~~~~~~~ 80 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR----PVLLLGLFIF 80 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh----HHHHHHHHHH
Confidence 3444444334433333 334455667778888764 35688899999999999999999999987 4444455555
Q ss_pred HHHHHHHH
Q 021109 293 LWRHILFD 300 (317)
Q Consensus 293 ~~~~l~~~ 300 (317)
+++.+...
T Consensus 81 ~~~~~~~~ 88 (385)
T TIGR00710 81 ALSSLGLA 88 (385)
T ss_pred HHHHHHHH
Confidence 55554443
No 36
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=94.83 E-value=0.081 Score=50.64 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch-------hhHHHHHhhhhcccccccccchhhhhccCCCcchHH
Q 021109 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-------TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCD 286 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~-------~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~ 286 (317)
+.+++.+|+..++..-+.-++.--+..+.++++.+.. ....++..+...++.+.+|.++||++|| |.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~ 88 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK----IMLL 88 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH----HHHH
Confidence 4467777776655443333444556677788776532 3466777888999999999999999987 4444
Q ss_pred HHHHHHHHHHHHH
Q 021109 287 CTAWSLLWRHILF 299 (317)
Q Consensus 287 ~~~~~~~~~~l~~ 299 (317)
.+.++.+++.+++
T Consensus 89 ~~~~~~~~~~~~~ 101 (408)
T PRK09874 89 RSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 37
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=94.74 E-value=0.058 Score=57.39 Aligned_cols=68 Identities=24% Similarity=0.171 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHHHHhhhhh---heeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 211 AFVKADFWLLWFVYFLGVGAG---VTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~G---l~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.-.++..|.+++.++++.... ..+++. +..+.++++.+. ...+.++..++..+|.+++|+++||+|||
T Consensus 159 ~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 159 CGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 334566776665554443222 122222 233445566653 35678899999999999999999999998
No 38
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.71 E-value=0.056 Score=51.91 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
+.+|.+.+..++......++..-+..+.+++|.+. ....++...++..+|.+.+|.++||++|| |...++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~ 78 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK----HILLFLVALC 78 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH----HHHHHHHHHH
Confidence 45677666655555554556666677888888764 45789999999999999999999999987 4444454445
Q ss_pred HHHHHHHHh
Q 021109 293 LWRHILFDG 301 (317)
Q Consensus 293 ~~~~l~~~~ 301 (317)
+++.++...
T Consensus 79 ~~~~~l~~~ 87 (382)
T PRK10091 79 VIGNAMFTL 87 (382)
T ss_pred HHHHHHHHH
Confidence 555444433
No 39
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.70 E-value=0.082 Score=50.84 Aligned_cols=94 Identities=13% Similarity=-0.077 Sum_probs=60.4
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
+..+.+|+++||.+.+..++..++-..+........++.|.++. ....++..+...++...+|.+.||+++| |.
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~----~~ 272 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR----DL 272 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH----HH
Confidence 45789999999999888777666655566666766777777643 3445555555555555555555555443 55
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 021109 285 CDCTAWSLLWRHILFDGSNC 304 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~~ 304 (317)
+.++.+...+..+.++....
T Consensus 273 l~~~~~~~~~~~~~~~~~~~ 292 (382)
T TIGR00902 273 LLISAIACVGRWAIIGAIEA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHhHhh
Confidence 56666666666555554443
No 40
>PRK12382 putative transporter; Provisional
Probab=94.69 E-value=0.047 Score=52.34 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=47.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchh-HHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+...+..+|.+++..++..-+.-+...-+. .+.+++|.+. ....++...+...++.+.+|.++||++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r 81 (392)
T PRK12382 10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK 81 (392)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch
Confidence 445666777776655444333222223233 2456777653 45789999999999999999999999998
No 41
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=94.66 E-value=0.085 Score=50.92 Aligned_cols=79 Identities=8% Similarity=-0.066 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhhh----hhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHH
Q 021109 215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCT 288 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g----~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~ 288 (317)
.++|++.+.+.+... ..-++.-...++.++++.+. .....+...+...++.+..|.++||++|| |.+.++
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~ 84 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR----PVMLAG 84 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHH
Confidence 566666655554443 23334445666778888764 34677889999999999999999999987 444444
Q ss_pred HHHHHHHHH
Q 021109 289 AWSLLWRHI 297 (317)
Q Consensus 289 ~~~~~~~~l 297 (317)
..+.+++.+
T Consensus 85 ~~~~~~~~~ 93 (406)
T PRK15402 85 VAFFILTCL 93 (406)
T ss_pred HHHHHHHHH
Confidence 444444443
No 42
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.64 E-value=0.088 Score=51.19 Aligned_cols=70 Identities=6% Similarity=-0.111 Sum_probs=41.8
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh----CCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~----~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.+|++.+|.+.+.+++....-.+..........+. +.+ ......++..+.+.+|.+.+|.++||+++|
T Consensus 217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~ 292 (420)
T PRK09528 217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK 292 (420)
T ss_pred HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4677788888766544333322111222222223222 222 123566777788999999999999999987
No 43
>PRK03545 putative arabinose transporter; Provisional
Probab=94.60 E-value=0.082 Score=50.78 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=50.1
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..+.+|++.+|..+...++......+..+....+.++ .|.+. .....+++++.+.+|++..|.++||.++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 271 (390)
T PRK03545 197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG 271 (390)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 35688999999987776655444433333334444454 45543 45677889999999999999999998764
No 44
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=94.53 E-value=0.1 Score=48.60 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=40.8
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI 297 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l 297 (317)
...+.++++.++ .....++..++..++.+.+|.++||++|| |.+.++..+.+++.+
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r----~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR----AVAMLGGILYGLGFT 83 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc----chhHHhHHHHHHHHH
Confidence 445667777764 45789999999999999999999999998 444444444444443
No 45
>PRK10504 putative transporter; Provisional
Probab=94.52 E-value=1.1 Score=44.16 Aligned_cols=81 Identities=14% Similarity=-0.005 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecc-hhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
+.+|++.|+...+..++...+ ...... .....+. +|.+. .........+....++.+.|.++||++|| |.+
T Consensus 256 ~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----~~~ 330 (471)
T PRK10504 256 KLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----RVL 330 (471)
T ss_pred HHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----HHH
Confidence 478888888877766655433 333333 3334443 55543 23455666677788889999999999886 444
Q ss_pred HHHHHHHHHH
Q 021109 286 DCTAWSLLWR 295 (317)
Q Consensus 286 ~~~~~~~~~~ 295 (317)
..+.++++++
T Consensus 331 ~~~~~~~~~~ 340 (471)
T PRK10504 331 VATTLGLALV 340 (471)
T ss_pred HHHHHHHHHH
Confidence 4344433433
No 46
>PRK10054 putative transporter; Provisional
Probab=94.51 E-value=0.08 Score=51.40 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+++|.+.+..++....--++..-+.... +.+|.+. ....+++..+...++++..|.++||++||
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k 73 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK 73 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3688888866665433333333344433 5577764 45678888888999999999999999997
No 47
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=94.49 E-value=0.068 Score=51.79 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=50.1
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
.+.+|++.+|.+.+..++....-.....-...+.+.+|.+. .....++..+++.+|++..|.++||++||+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 288 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN 288 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 46788999998887766544332233333444556666653 345667788999999999999999999764
No 48
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.17 Score=51.43 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282 (317)
Q Consensus 206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 282 (317)
..++|.++++..|.+.+..+|....--..-+-+..+..+ .++++ +..+...+.+.+.+|-++.|++|||+. ....
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~--~~~~ 341 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK--TIFA 341 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh--hhHH
Confidence 367899999999999999988777765555556666666 33443 346777888999999999999999974 1111
Q ss_pred -chH--HHHHHHHHHHHHHHHhh
Q 021109 283 -LCC--DCTAWSLLWRHILFDGS 302 (317)
Q Consensus 283 -R~~--~~~~~~~~~~~l~~~~~ 302 (317)
|.+ ....++..+|+..+...
T Consensus 342 ~~~~~~~~~~~~~~~g~~~l~~~ 364 (495)
T KOG2533|consen 342 RRLLFIVFLCLYAIIGAISLLAA 364 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 223 34555666665544444
No 49
>PRK03699 putative transporter; Provisional
Probab=94.41 E-value=0.093 Score=50.64 Aligned_cols=81 Identities=7% Similarity=-0.049 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
+-+|..++.+++..+.-.+.-....++.++++.+. .....++..++..+|.+.+|.++||++|| |.+..+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r----~~~~~~~~~~ 82 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK----RQLIFGFALM 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence 45666666666655554444445667888887764 35678888899999999999999999998 4554444444
Q ss_pred HHHHHHH
Q 021109 293 LWRHILF 299 (317)
Q Consensus 293 ~~~~l~~ 299 (317)
+++.++.
T Consensus 83 ~i~~~l~ 89 (394)
T PRK03699 83 ILAVAGL 89 (394)
T ss_pred HHHHHHH
Confidence 4444433
No 50
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=94.40 E-value=0.051 Score=50.54 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
||.++...++.....-+....+..+..+.+.+. .....++..+...++.+.+|.++||++||
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r 64 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK 64 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh
Confidence 344554444433333333333444555665543 35678888899999999999999999987
No 51
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=94.21 E-value=0.078 Score=51.99 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=51.4
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--c--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--D--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.+|++.+|...+..++-.|......+++....++.+.. + +..+.++.-..-.+||+++|++.||+++|
T Consensus 225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~ 299 (410)
T TIGR00885 225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH 299 (410)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 34678888999988888887777766666677666654322 1 23355555567789999999999999776
No 52
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.20 E-value=0.096 Score=51.81 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL 293 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~ 293 (317)
.++.+++.+++..-...+.......+.++++.+. ....+++..+...+|.+..|.++||++|| |....+.++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~ 96 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR----LAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHH
Confidence 4555555554433333333344566777787764 35688888899999999999999999987 44444444444
Q ss_pred HHHHHH
Q 021109 294 WRHILF 299 (317)
Q Consensus 294 ~~~l~~ 299 (317)
++.++.
T Consensus 97 ~~~~~~ 102 (496)
T PRK03893 97 VGTLAC 102 (496)
T ss_pred HHHHHH
Confidence 444433
No 53
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=94.16 E-value=0.087 Score=52.80 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHH---hCCC--chhhHHHHHhhhhcccccccccchhh-hhccCCCcchHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCCDCTA 289 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~~~~~ 289 (317)
.+|.+++..++-..+--.+..++....++ +|.+ ++...++.+++...++.+.+|+++|| ++|| |+..++.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~----~~l~~~~ 86 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK----KTMVLGG 86 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH----HHHHHHH
Confidence 46777766655333323344455555544 5665 34678899999999999999999999 7988 6666666
Q ss_pred HHHHHHHHHHHhhh
Q 021109 290 WSLLWRHILFDGSN 303 (317)
Q Consensus 290 ~~~~~~~l~~~~~~ 303 (317)
.+.++++++++...
T Consensus 87 ~~~~~g~~~~~~~~ 100 (475)
T TIGR00924 87 IVLMLGHFMLAMSI 100 (475)
T ss_pred HHHHHHHHHHHhcc
Confidence 67777777665543
No 54
>PRK11663 regulatory protein UhpC; Provisional
Probab=94.11 E-value=0.14 Score=50.21 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL 293 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~ 293 (317)
-++.+++.+++.......+-.-+.++.++++.+. .....++..+...++++..|.++||+++| |...++.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~~~~~~~~~~ 99 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR----YFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc----hhHHHHHHHHH
Confidence 4444444444433332233334556777777763 35688899999999999999999999987 44444444444
Q ss_pred HHHHHH
Q 021109 294 WRHILF 299 (317)
Q Consensus 294 ~~~l~~ 299 (317)
++.+++
T Consensus 100 ~~~~~~ 105 (434)
T PRK11663 100 IINILF 105 (434)
T ss_pred HHHHHH
Confidence 444433
No 55
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=94.09 E-value=0.086 Score=51.16 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS 291 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~ 291 (317)
+++||.+++..++..-...++...+..+.++++.++ ....++...+...++-...|.++||++|| |.+..+.++
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr----~vl~~~~~~ 77 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG----RVMFIANGI 77 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc----hhhHHHHHH
Confidence 458999988877755443344444555667776654 24567788888999999999999999998 555333333
Q ss_pred HHH
Q 021109 292 LLW 294 (317)
Q Consensus 292 ~~~ 294 (317)
..+
T Consensus 78 ~~~ 80 (393)
T PRK11195 78 KLL 80 (393)
T ss_pred HHH
Confidence 333
No 56
>PRK03699 putative transporter; Provisional
Probab=93.87 E-value=0.1 Score=50.27 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+|.+.+..++.......+.+-...+.+ ..+.+ +.....+++.+++.+||+..|.++||+++|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 271 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ 271 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 46787777766655443333444555664 45665 345678899999999999999999999887
No 57
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=93.79 E-value=0.13 Score=48.49 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=54.6
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH---hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.+.+|+..+.+++-.|+...+.+.......+ ++.+ ..+...+.+..+-.+||++.+.++||++++
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 46778899999999998888877766656655543 2444 346789999999999999999999999876
No 58
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=93.72 E-value=0.2 Score=51.93 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHHhhhhh---heee-cchhHHHHHhCCCch-hhHHHHHhhhhcccccccccchhhhhccCCCcchHHH
Q 021109 213 VKADFWLLWFVYFLGVGAG---VTVL-NNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDC 287 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~G---l~~i-~n~~~i~~a~~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~ 287 (317)
+++.|+..+..+.+..-+. +..- +-+.+|.+++|.++. +.+++..++.++++-...|-+||.+||| .....
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr----~~~i~ 113 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR----YFFII 113 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch----HHHHH
Confidence 4567777665444433322 2222 225678899988653 5677788888999999999999999986 22266
Q ss_pred HHHHHHHHHHHHHhhhhHHHHh
Q 021109 288 TAWSLLWRHILFDGSNCLRAFW 309 (317)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ 309 (317)
+.++.++|+++-+.+.+.-.+-
T Consensus 114 g~~l~vvG~Iv~atA~~~~~~i 135 (599)
T PF06609_consen 114 GSLLGVVGSIVCATAQNMNTFI 135 (599)
T ss_pred HHHHHHhHHHHhhcCCcHHHHH
Confidence 7777888887666655544443
No 59
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.63 E-value=0.15 Score=46.84 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHH
Q 021109 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWR 295 (317)
Q Consensus 218 w~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~ 295 (317)
|.+....++......+.......+.++.+.+. .....++..+.+.++.+.+|.++||++|| |.+..+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r----~~~~~~~~~~~~~ 77 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR----RVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc----hhhHHHHHHHHHH
Confidence 34444443333333333344455556666553 35678888899999999999999999987 3444555555555
Q ss_pred HHHHH
Q 021109 296 HILFD 300 (317)
Q Consensus 296 ~l~~~ 300 (317)
++.+.
T Consensus 78 ~~~~~ 82 (352)
T cd06174 78 SLLLA 82 (352)
T ss_pred HHHHH
Confidence 54443
No 60
>PRK10133 L-fucose transporter; Provisional
Probab=93.54 E-value=0.11 Score=51.42 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=47.8
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++.+++++||...+..++..+.-....+-.... .+ ..+.+. .....+...++..+||+..|.+.||+++|
T Consensus 252 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~ 325 (438)
T PRK10133 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 577889999987666555544322222222222 23 345553 45688899999999999999999999887
No 61
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.40 E-value=0.19 Score=47.58 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.7
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
...+.++++.++ .....++..+...++.+..|.++||++|| |.+.++.++.+++.++.
T Consensus 35 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r----~~~~~~~~~~~~~~~~~ 94 (405)
T TIGR00891 35 LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR----LPMVTSIVLFSAGTLAC 94 (405)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHH
Confidence 345556777653 35688889999999999999999999998 55554545455554443
No 62
>PRK12307 putative sialic acid transporter; Provisional
Probab=93.40 E-value=0.13 Score=49.84 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=49.0
Q ss_pred CHHhhhhhhHHHHHHHHHH---HhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~---~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.++++.+|.+...+. +..+....+.+......++.+.+. .....++..+++.+|++.+|.++||++||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 296 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK 296 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4578889989886554332 222222223445555666666653 34567888899999999999999999886
No 63
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=93.39 E-value=0.16 Score=49.66 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhC--CC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~--~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++++.+|...+.++|..+.-..+......+.++.+ .+ .+....++..+++.+||+..|+++||+++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r 309 (412)
T TIGR02332 237 REIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER 309 (412)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence 3455688999988887766554445667777777753 33 234577888999999999999999999875
No 64
>PRK03545 putative arabinose transporter; Provisional
Probab=93.35 E-value=0.16 Score=48.73 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=42.6
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
..++.++++.+. ....+++..+...++.+.+|.++||++|| |....+.++.+++.+..
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~ 91 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR----KLLIGLFVLFIASHVLS 91 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHHHHHH
Confidence 577888888764 35678888888899999999999999997 55544555555554433
No 65
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.075 Score=53.51 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=65.4
Q ss_pred CCCCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQW 280 (317)
Q Consensus 204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~ 280 (317)
.+..++++++++.+|.+|+..++..-+=.++........ +-++++ +...+.++=-+...+-++++|.++|++.+| .
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ 325 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I 325 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 466889999999999999988775544444333333333 446665 456777888888999999999999999886 5
Q ss_pred CcchH------HHHHHHHHHHHHHH
Q 021109 281 YPLCC------DCTAWSLLWRHILF 299 (317)
Q Consensus 281 ~~R~~------~~~~~~~~~~~l~~ 299 (317)
++.+. .++++..++..+.+
T Consensus 326 ls~t~~rkifn~i~~~~~ai~l~~l 350 (466)
T KOG2532|consen 326 LSETTVRKIFNTIAFGGPAVFLLVL 350 (466)
T ss_pred CchHhHHHHHHhHHHHHHHHHHHee
Confidence 54332 44555555444433
No 66
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=93.27 E-value=0.19 Score=48.29 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.|.+++.+++....-..+.+....+.++.|.+. .....++.++.+.+|++..|.++||+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444433333334445566677777653 45677888899999999999999999886
No 67
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.27 E-value=0.19 Score=48.27 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=53.7
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
++++.+|++.||.+.+..++....-..+.+......++.|.++ .....++..+.+..+++..|.+.||++++ |.
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----~~ 272 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR----DL 272 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HH
Confidence 4678999999998877655544332223333344446666653 23455566666777777777777776655 44
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021109 285 CDCTAWSLLWRHILFDG 301 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~~~ 301 (317)
..++....+++.+.+..
T Consensus 273 l~~~~~~~~~~~~~~~~ 289 (382)
T PRK11128 273 LLLSAICGVVRWGLMGS 289 (382)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455555555444433
No 68
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=93.27 E-value=0.19 Score=47.19 Aligned_cols=72 Identities=19% Similarity=0.103 Sum_probs=47.6
Q ss_pred CHHhhhhhhH--HHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~--Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.++++. +|......++..............+. +.++.++ .....++..+.+.++++..|.++||++||
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (394)
T TIGR00883 209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR 285 (394)
T ss_pred CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3456666655 77666665554444333334455555 3455543 34567788899999999999999999987
No 69
>PRK03633 putative MFS family transporter protein; Provisional
Probab=93.26 E-value=0.19 Score=48.15 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=45.5
Q ss_pred CHHhhhhhhHHHHHHHHHHHh-hhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLG-VGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~-~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..+.++++.+|......++. ...+..+ +-+....+..+.+. ....+++..+.+.+||+..|.++||+++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 192 SIWPMLKLRQARLGVNGCIISGIVLGSLY-GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 346678888888654432221 1112111 22344445556553 34678888899999999999999999886
No 70
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=93.24 E-value=0.27 Score=46.21 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++++++|.++...++..+...++........ +.++.++ .....++..+.+..+++..|.++||++||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~ 265 (375)
T TIGR00899 194 GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR 265 (375)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence 456778888877766555543333333333333 4456553 23455566667788999999999999887
No 71
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=93.18 E-value=0.17 Score=47.23 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=42.4
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~ 301 (317)
..+.++++.+. .....++..+...++.+..|.++||++|| |.+.++.++.+++.+++..
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR----VFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe----ehhHHHHHHHHHHHHHHHH
Confidence 34566777653 45788899999999999999999999987 4444555555555544433
No 72
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=93.17 E-value=0.14 Score=48.25 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++.++++.+|.+.+...+..+....+......+.+ ..+.+. .....++..+...+|++..|.++||+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 272 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK 272 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 456778888888776655544433333333333443 455543 34567778889999999999999999886
No 73
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=93.10 E-value=1.2 Score=45.13 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=62.8
Q ss_pred CCCCHHhhhhhh----HHHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhh
Q 021109 204 EDFKLGEAFVKA----DFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 204 ~d~t~~~~l~t~----~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~ 276 (317)
.+.+++|.++++ ..++.....++..-+|...++- ...|.++.|.+. +.......++.|....+.+.++-||+|
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466889998863 3556666677777778775544 344667777763 344566778889999999999999999
Q ss_pred ccCCCcchH-HHHHHHHHHHHHHHHhh
Q 021109 277 SSQWYPLCC-DCTAWSLLWRHILFDGS 302 (317)
Q Consensus 277 ~~~~~~R~~-~~~~~~~~~~~l~~~~~ 302 (317)
| |++ ..+..++++..+++...
T Consensus 334 R-----RpLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 334 R-----RPLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred C-----cHHHHHHHHHHHHHHHHHHHH
Confidence 8 556 44444444444444433
No 74
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=92.97 E-value=0.22 Score=47.72 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=46.7
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++.++++.+|...+...+.......+.+-...+. +.+|.++ .....++.++.+.+|++..|.+.||++||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~ 269 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR 269 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4677888888776665554444333332222333 3456653 34567788889999999999999999886
No 75
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=92.82 E-value=0.21 Score=48.69 Aligned_cols=56 Identities=11% Similarity=-0.106 Sum_probs=39.2
Q ss_pred HHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109 242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 242 ~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~ 301 (317)
.++++.+. ..+..+++.++.++|.+..|.++||++|| |...+..++..++.++.+.
T Consensus 35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~ 92 (412)
T TIGR02332 35 GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR----RWIAGIMVLWGIASTATMF 92 (412)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH----HHHHHHHHHHHHHHHHHHH
Confidence 34555543 35688899999999999999999999997 4444455555555544443
No 76
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=92.65 E-value=0.1 Score=51.16 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=53.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC----------chhhHHHHHhhhhcccccccccchhhhhc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN----------DTTELLCLFSLCNFAGRLGSGVLSEHYVS 277 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~----------~~~~~vsl~si~n~~GRl~~G~lsD~~~~ 277 (317)
..+.+|++.||.+++..++....-..+........++.+.+ .....+++.++....+++..|.++||+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45688999999888776665332211112222223344432 23568888889999999999999999998
Q ss_pred cCCCcchHHHHHHHHHHHH
Q 021109 278 SQWYPLCCDCTAWSLLWRH 296 (317)
Q Consensus 278 ~~~~~R~~~~~~~~~~~~~ 296 (317)
| +.+.++.++.+++.
T Consensus 281 r----~~l~~~~~~~~v~~ 295 (418)
T TIGR00889 281 K----KVMLLSLVAWALRF 295 (418)
T ss_pred H----HHHHHHHHHHHHHH
Confidence 6 44444444444443
No 77
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=92.57 E-value=0.19 Score=48.66 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW 290 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~ 290 (317)
++...|.+...+.+..+.+.. .+-...+.++++.+. ....+++..++..++.+..|.+.||++|| |.+..+..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k----~~l~~~~~ 86 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLE-QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL----KTMMIGLL 86 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhH-HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHH
Confidence 344455555555555555533 334556667887763 46788999999999999999999999998 55544444
Q ss_pred HHHHHH
Q 021109 291 SLLWRH 296 (317)
Q Consensus 291 ~~~~~~ 296 (317)
+.+++.
T Consensus 87 ~~~~~~ 92 (402)
T TIGR00897 87 LWCVGH 92 (402)
T ss_pred HHHHHH
Confidence 444443
No 78
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=92.43 E-value=0.41 Score=47.41 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhhhhhheeecc----hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNN----LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQW 280 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n----~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~ 280 (317)
..+|..+...+++...-.+.-+| ...+.++++.+. ..+..+.+.+..+++.+..|.++||+++|+.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~ 96 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF 96 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch
Confidence 34666666555554433222222 344667777653 3567888899999999999999999999843
No 79
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=92.31 E-value=0.27 Score=49.05 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred hHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 239 AQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 239 ~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.++++.+.. ....+...++..+|.+..|.++||++||
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r 101 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR 101 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 456667777533 3456677788889999999999999987
No 80
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=92.21 E-value=0.2 Score=50.41 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=48.5
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.+|+++-|++-+.++|..|.=.-..+-..+..++. +++. .....+.++...++|.+.|+++||++++
T Consensus 245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~ 316 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV 316 (462)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence 46789999999998888887765433333344444442 2222 2234556788999999999999999987
No 81
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=92.19 E-value=0.35 Score=47.74 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=35.2
Q ss_pred CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109 246 GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 246 ~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~ 298 (317)
+.+. .....+...++..+|.+.+|.++||++|| |....+.++.+++.++
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k----~~l~~~~~~~~i~~~~ 109 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR----VFLPAGLILAAAVMLF 109 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc----hhHHHHHHHHHHHHHH
Confidence 5543 35678899999999999999999999998 4444444444444433
No 82
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=92.13 E-value=0.34 Score=48.07 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=38.9
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~ 298 (317)
..++.++++.+. .....++..+...++..++|.++||++|| |.+..+..+.+++.++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~~~~~~~~~~~ 100 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR----PVVIAGGLLASLGMIL 100 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch----HHHHhhHHHHHHHHHH
Confidence 456667777653 35677777788888999999999999997 4444444444444443
No 83
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=92.11 E-value=0.31 Score=46.67 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=45.9
Q ss_pred eeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 233 TVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 233 ~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
++..-..++.++++.++. ....++..+...++.+..|.++||++|| |.+.++..+..++.+++.
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r----~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK----PVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh----HHHHHHHHHHHHHHHHHH
Confidence 445567778888887643 4577888889999999999999999986 444445555555544443
No 84
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=92.02 E-value=0.52 Score=47.47 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHH
Q 021109 212 FVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCT 288 (317)
Q Consensus 212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~ 288 (317)
+..+.+|+-++.+..+...=.+.---..++.+ +++.+. ...++++..+..+++|+..|.+.||+|.| |...++
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R----~v~~~~ 106 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR----RWTVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHH
Confidence 34446777776665544333222222233333 466653 46788999999999999999999999987 444444
Q ss_pred HHHHHHHHHHH
Q 021109 289 AWSLLWRHILF 299 (317)
Q Consensus 289 ~~~~~~~~l~~ 299 (317)
.++.++..+..
T Consensus 107 ~ll~~i~~~~~ 117 (462)
T PRK15034 107 TAILIIPCVWL 117 (462)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 85
>PRK11043 putative transporter; Provisional
Probab=91.92 E-value=0.36 Score=46.38 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=43.0
Q ss_pred eeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109 233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI 297 (317)
Q Consensus 233 ~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l 297 (317)
++.-...++.++++.++ .....++..+...+|.+.+|.++||++|| |....+..+..++.+
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK----PVLLAGLSLFALGSL 86 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc----HHHHHHHHHHHHHHH
Confidence 44455666777887764 35688899999999999999999999997 444333333444433
No 86
>PRK10489 enterobactin exporter EntS; Provisional
Probab=91.84 E-value=0.13 Score=49.92 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHHHhh-hhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCC
Q 021109 211 AFVKADFWLLWFVYFLGV-GAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWY 281 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~-g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~ 281 (317)
..|+++|+.+++..++.. +.+.. .--+..+.++++.+. .....+...+...++.+..|.++||++||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l 85 (417)
T PRK10489 13 LKTHPAFRAVFIARFISIFGLGLL-GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI 85 (417)
T ss_pred HHhCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence 346778887777643333 33332 222344556665543 35688888999999999999999999998543
No 87
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=91.83 E-value=0.36 Score=46.30 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS 291 (317)
Q Consensus 241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~ 291 (317)
+.++++.++ .....++..+...++.+..|.++||++|| |.+..+.++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r----~~l~~~~~~ 90 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPK----KAVVFGLCG 90 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCc----chHHHHHHH
Confidence 556677654 35688899999999999999999999998 555444333
No 88
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=91.78 E-value=0.55 Score=46.03 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=30.9
Q ss_pred HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
..++.+.+. .....++..++..+|.+..|.++||++||+
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~ 92 (438)
T TIGR00712 52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV 92 (438)
T ss_pred HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce
Confidence 344556553 356788899999999999999999999873
No 89
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=91.70 E-value=0.44 Score=43.69 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS 291 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~ 291 (317)
+.+|.+.+..++.......+......+.++. +.++ .....++..+.+.+|++.+|.++||++||+. ...++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~ 251 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---LLLIGLLL 251 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHH
Confidence 6777777777776666666666666666665 5443 3567788889999999999999999998731 44444444
Q ss_pred HHHHHHHHH
Q 021109 292 LLWRHILFD 300 (317)
Q Consensus 292 ~~~~~l~~~ 300 (317)
..++.+.+.
T Consensus 252 ~~i~~~~~~ 260 (352)
T cd06174 252 AALGLLLLA 260 (352)
T ss_pred HHHHHHHHH
Confidence 454444333
No 90
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=91.60 E-value=0.32 Score=47.69 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=45.5
Q ss_pred cchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109 236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 236 ~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~ 301 (317)
.....+.++++.+. .....+...+++.++.+..|.++||++|| |.+.++..+.+++.++...
T Consensus 23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~ 86 (485)
T TIGR00711 23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR----RLFLISTFAFTLGSLLCGV 86 (485)
T ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH----HHHHHHHHHHHHHHHHHhC
Confidence 34566777887653 45788899999999999999999999987 5555555555655554443
No 91
>PRK12307 putative sialic acid transporter; Provisional
Probab=91.52 E-value=0.46 Score=45.91 Aligned_cols=58 Identities=16% Similarity=0.003 Sum_probs=41.2
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
..|.++++.++ .....++..+...+|.+.+|.++||++|| +...++.++.+++.++.+
T Consensus 42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK----PLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHHH
Confidence 44556777664 35678888899999999999999999987 444555555555544433
No 92
>PF13347 MFS_2: MFS/sugar transport protein
Probab=91.22 E-value=0.58 Score=45.75 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=60.2
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc-hhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND-TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~-~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
.+++..++++|+.++...++...+-.+.........+.. +.++ .+.+..+..+.+.++-++++.++||++|| |.
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----~~ 292 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK----KV 292 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce----ee
Confidence 457888899999988888775444444333444444543 4332 34566677888999999999999999998 56
Q ss_pred HHHHHHHHHHHHHHH
Q 021109 285 CDCTAWSLLWRHILF 299 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~ 299 (317)
+..+.++.+++++.+
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 293 YIIGLLLAALGFLLL 307 (428)
T ss_pred hhhhHHHHHHHHHHH
Confidence 655555555555433
No 93
>TIGR00893 2A0114 d-galactonate transporter.
Probab=91.02 E-value=0.21 Score=46.47 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=33.1
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
..+.++++.++ .....++..+.+.++.+..|.++||++||+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 60 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce
Confidence 34556667653 357888999999999999999999999873
No 94
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=90.83 E-value=0.39 Score=46.27 Aligned_cols=71 Identities=11% Similarity=-0.143 Sum_probs=44.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.++++.+|.+.+.+++..............+. +.++.+.. ........++..+|++..|.++||+++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~ 281 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR 281 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 35678889999887766554433222222233333 34555532 2344455667889999999999999876
No 95
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=90.77 E-value=0.42 Score=48.25 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=53.0
Q ss_pred hhhhhh-HHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCch--hhHHHHHhhhhcccccccccchhh-hhccCCCcch
Q 021109 210 EAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLC 284 (317)
Q Consensus 210 ~~l~t~-~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~ 284 (317)
+.++.+ .+|.++...++...+--.+...+.... +.+|.++. ...++..........+.+|+++|| ++|| |.
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----~~ 90 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----RV 90 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----HH
Confidence 444555 589988877765544322333333333 56777643 334444444444445688999999 5987 56
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021109 285 CDCTAWSLLWRHILFDGS 302 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~ 302 (317)
...+.+++++++++++.+
T Consensus 91 ~~~g~~~~~ig~~l~~~~ 108 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWS 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666655443
No 96
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=90.75 E-value=0.56 Score=45.56 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=35.8
Q ss_pred HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~ 298 (317)
+.+.+|.+. ..+..++..+...+.++..|.++||++|| |....+..+..++.+.
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k----~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK----PMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch----HHHHHHHHHHHHHHHH
Confidence 345667653 34567777778888899999999999987 4444444444444433
No 97
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=90.73 E-value=0.29 Score=45.23 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=40.3
Q ss_pred HHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109 240 QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 240 ~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~ 298 (317)
.+.++++.+. .....++..+.+.++.+..|.++||++|| |...++.++.+++.++
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~ 78 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR----RVLIIGLLLFALGSLL 78 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe----eeEeehhhhhhhHHHH
Confidence 4566677553 45788889999999999999999999987 5455666666666333
No 98
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=90.67 E-value=0.76 Score=44.00 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 241 i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.+.+......+++.++..+||+..|.+.||+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 279 (399)
T PRK05122 242 YYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGL 279 (399)
T ss_pred HHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34444544445667888899999999999999999875
No 99
>TIGR00895 2A0115 benzoate transport.
Probab=90.66 E-value=0.57 Score=44.00 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=39.8
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
...+.+.++.+. .....++..+...+|.+..|.++||++|| |.+..+.++.+++.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~ 99 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK----RVLLWSILLFSVFTLLC 99 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH----HHHHHHHHHHHHHHHHH
Confidence 445566667653 34677788889999999999999999987 44444444444444433
No 100
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=90.33 E-value=0.79 Score=44.29 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhhhhee--ec-chhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTV--LN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW 290 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~--i~-n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~ 290 (317)
.-|++...++.+.-...++ ++ -...+.++++.++ ....+++..++..++-+..|.++||++|| |....+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r----~~l~~~~~ 82 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER----RSVAISLL 82 (393)
T ss_pred hHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch----HHHHHHHH
Confidence 3466666555555444332 12 1334566677653 35688888889999999999999999998 66677777
Q ss_pred HHHHHHHHHHhhhhH
Q 021109 291 SLLWRHILFDGSNCL 305 (317)
Q Consensus 291 ~~~~~~l~~~~~~~~ 305 (317)
+.+++.++.+.+.+.
T Consensus 83 l~~~~~~~~~~a~~~ 97 (393)
T PRK09705 83 LIAVGALMRELYPQS 97 (393)
T ss_pred HHHHHHHHHHHCcch
Confidence 777777766555443
No 101
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=90.32 E-value=0.44 Score=45.04 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=43.6
Q ss_pred eecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109 234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 234 ~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~ 298 (317)
+.-....+.++++.+. .....++..+...+|++..|.++||++|| |.+..+..+.+++.++
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~i~~~~ 72 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK----PVILGGTLVFALAAVA 72 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh----HHHHHHHHHHHHHHHH
Confidence 3455667778887763 35678899999999999999999999986 4444444444444443
No 102
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.22 E-value=0.42 Score=45.04 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=42.8
Q ss_pred HHhhhhhhH---HHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~---Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+.++++. +|.+.+..++...+............+++|.+.. ....++.+ +...+|.+++|.++||+++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 275 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL 275 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345555554 6666655444333322333444555566776543 23444444 56789999999999999987
No 103
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=90.17 E-value=0.45 Score=45.99 Aligned_cols=68 Identities=19% Similarity=0.292 Sum_probs=45.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch-hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+++.++++++|.+++.++|..+.-..+.+-+.++.++.+++.. ....++.. ..|-++.|+++||+.|+
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARA 253 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhh
Confidence 4688999999999998888766655454446677776665432 22333333 34445569999999765
No 104
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=90.14 E-value=0.55 Score=44.42 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=47.2
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.++++.+|...+..++..+.-..+........+ ..+.+. .....++.++...+|++..|.+.||+++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~ 260 (377)
T PRK11102 187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL 260 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 346677778887666555444333333333333443 345543 34677888899999999999999999987
No 105
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=90.09 E-value=0.51 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc----hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~----~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+++.+|+.+++..++..-...++..-+.. +...++.+. .++..+++.+...++.+.+|.++||++||
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH
Confidence 5688889999998777754333322222222 222333332 24566778888999999999999999998
No 106
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=89.88 E-value=1 Score=44.45 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=59.6
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..+.+|+++-|..+++.++..+...+.-.=++++.++. |.+. .+...-+++++..+|-++.|.++|| +.+
T Consensus 203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 457899999999999999999999999888888888876 4443 3567778999999999999999999 544
No 107
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=89.86 E-value=0.61 Score=46.74 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=43.0
Q ss_pred hhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 238 ~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
+.+|.++++.+ +....++.+.+..+.+-+.+|.++||++|| |....+.++..++.++..
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk----~~l~~~~~~~~~~~~~~~ 89 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK----RLLMLGGTLFGLASLAAA 89 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHH
Confidence 56778888765 346788888999999999999999999998 555445555555544433
No 108
>TIGR00895 2A0115 benzoate transport.
Probab=89.80 E-value=0.77 Score=43.11 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+|.+++.+++.......+.+....+.+..+.+. .....++.++++.+|+++.|.++||+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 34555555554433332222333344555666653 35678888999999999999999999875
No 109
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=89.69 E-value=0.68 Score=45.30 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=47.6
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhhe-eecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++++.++++.+|.+.+.+.+....+.. +..-..++.+ ..+.+. .....++..+...++....|.++||++||
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr 309 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR 309 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 467888899999877665544333222 2233444443 456653 34566677778888899999999999987
No 110
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=88.99 E-value=0.65 Score=44.66 Aligned_cols=87 Identities=11% Similarity=-0.016 Sum_probs=50.3
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeec-chhHHHHHhC----CCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQIGVALG----VND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~a~~----~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
+.++.+|++++|.+.+..++.. ....... -.....++.. .+. .....++..+.+.++.+..|.+.||+++|
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~- 284 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK- 284 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 4578899999987765443322 2222121 1222233321 111 23466777788899999999999999987
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 021109 280 WYPLCCDCTAWSLLWRHIL 298 (317)
Q Consensus 280 ~~~R~~~~~~~~~~~~~l~ 298 (317)
|...++..+.+++..+
T Consensus 285 ---~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 285 ---NALLIAGTIMSVRIIG 300 (396)
T ss_pred ---hhHHHHHHHHHHHHHH
Confidence 4344444444444443
No 111
>PRK12382 putative transporter; Provisional
Probab=88.76 E-value=1.3 Score=42.34 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=28.9
Q ss_pred HHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 241 i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.+.++.....+..++.+.+|++..|.++||+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~ 279 (392)
T PRK12382 242 YFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGV 279 (392)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455554445566778888899999999999999986
No 112
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=88.72 E-value=1.1 Score=44.28 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
...|.+-+..|+...+..+..+-+.+|+++++.+. +...+|+.+..-.+|-.....+.||+.|| |.+.....++
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr----~lLl~~l~lF 88 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR----RLLLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH----HHHHHHHHHH
Confidence 35667777788888889999999999999999874 45799999999999999999999999997 6666666677
Q ss_pred HHHHHHHHhhh
Q 021109 293 LWRHILFDGSN 303 (317)
Q Consensus 293 ~~~~l~~~~~~ 303 (317)
.+++++-+.+.
T Consensus 89 i~~n~l~alAp 99 (394)
T COG2814 89 IVSNLLSALAP 99 (394)
T ss_pred HHHHHHHHHhc
Confidence 77776544443
No 113
>PRK10133 L-fucose transporter; Provisional
Probab=88.30 E-value=0.9 Score=44.93 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL 293 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~ 293 (317)
.|+.+++.++...-.-.+...-..++.++++.++ ..+..+.+.+...++-+..|.+.||++|| |...++..+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r----~~l~~g~~~~~ 102 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK----AGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHH
Confidence 5666665554433333333334455656677764 35688899999999999999999999998 66666666666
Q ss_pred HHHHHH
Q 021109 294 WRHILF 299 (317)
Q Consensus 294 ~~~l~~ 299 (317)
++.+++
T Consensus 103 ~~~~l~ 108 (438)
T PRK10133 103 LGAALF 108 (438)
T ss_pred HHHHHH
Confidence 666553
No 114
>PRK15075 citrate-proton symporter; Provisional
Probab=87.64 E-value=1.1 Score=43.80 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhheeecc-hhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 212 FVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.+.+..|.+.....+....+...+.+ ...+.+. +|.+. ......+.++++.+|++..|.++||++||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r 304 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR 304 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44555555433333333333333333 4555554 56653 23456678889999999999999999986
No 115
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=87.46 E-value=1.1 Score=49.28 Aligned_cols=71 Identities=20% Similarity=0.100 Sum_probs=50.2
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCch---hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT---TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~~---~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+.++++.+|.+.+..++......++........+ .++.+.. ..+.++..++..+|.+++|.++|+++++
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~ 299 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL 299 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc
Confidence 456778888898877776666655555555555554 3565533 4567778888899999999999988765
No 116
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=87.31 E-value=0.56 Score=45.38 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HH-hCCC-chhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a-~~~~-~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
+++.++++.||.+.+..++...+.. ..+...... +. ++.+ ......++..+...+|.+.+|.++||++|| +.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~----~~ 289 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFN-IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK----IL 289 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH-HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HH
Confidence 4567889999988776655433322 222221111 11 1211 123455667888999999999999999986 44
Q ss_pred HHHHHHHHHHHH
Q 021109 285 CDCTAWSLLWRH 296 (317)
Q Consensus 285 ~~~~~~~~~~~~ 296 (317)
+.++..+.+++.
T Consensus 290 ~~~~~~~~~~~~ 301 (437)
T TIGR00792 290 FAGGILLMVLGY 301 (437)
T ss_pred HHHHHHHHHHHH
Confidence 544444444443
No 117
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=87.31 E-value=0.96 Score=42.48 Aligned_cols=38 Identities=5% Similarity=-0.137 Sum_probs=29.5
Q ss_pred HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++++.+. .....++..+...++....|.++||++||
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r 63 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDR 63 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 345566653 34677788888899999999999999987
No 118
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=87.25 E-value=1.6 Score=41.77 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.8
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.++++.++ .....+...++..+|.+..|.++||++||
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 80 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK 80 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34566777653 45688888999999999999999999998
No 119
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=86.92 E-value=0.88 Score=46.20 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHhCCCc--hhhHHHHHhhhhcccccccccchhhh-hccCCCcchHHHHHHHHHHHHHHHH
Q 021109 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 243 ~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~-~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
+.+|.++ +....+...+...++.+..|+++||+ ||| |+..++..++.++++++.
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr----r~iliG~il~~lg~lll~ 94 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR----MAVMLGALLMAIGHVVLG 94 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH----HHHHHHHHHHHHHHHHHH
Confidence 3456653 34577788888899999999999999 887 666667777777776554
No 120
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=86.69 E-value=1.1 Score=43.05 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.1
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
....++..+...++.+.+|.++||++|| |.+.++.++..++.++.
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~ 118 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRK----KSLLIIALLFVIGAILM 118 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhH----HHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999987 55545444455554433
No 121
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=86.18 E-value=1.1 Score=43.02 Aligned_cols=72 Identities=17% Similarity=-0.006 Sum_probs=47.5
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.+|++.+|.+....++...+......-.....++.|.+.. .....+.. +...+|.+..|.+.||++++
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 274 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW 274 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35688888888887776655544333333334455667777643 34445544 46678899999999999986
No 122
>PTZ00207 hypothetical protein; Provisional
Probab=86.08 E-value=1.1 Score=46.68 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhhheeecch--hHHHHHhCCCchh--hHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 217 FWLLWFVYFLGVGAGVTVLNNL--AQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~--~~i~~a~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
+|.+...+.+...+|.++..++ .++.+++|.+... ...++ ...-+.+-+..|.++||+|+| +.+.++.++.
T Consensus 27 w~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R----~vllig~ll~ 101 (591)
T PTZ00207 27 FALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPR----PIFVLSMTVF 101 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHH
Confidence 4455555555555666665554 5566777776432 22222 222233455689999999986 4446777777
Q ss_pred HHHHHHHHhh
Q 021109 293 LWRHILFDGS 302 (317)
Q Consensus 293 ~~~~l~~~~~ 302 (317)
++++++.+.+
T Consensus 102 ~iG~ll~ala 111 (591)
T PTZ00207 102 CLGTLLFALT 111 (591)
T ss_pred HHHHHHHHHH
Confidence 7777655553
No 123
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=85.35 E-value=1.4 Score=44.45 Aligned_cols=57 Identities=14% Similarity=-0.000 Sum_probs=40.9
Q ss_pred HHHhCCCc--hhhHHHHHhhhhcccccccccchhh-hhccCCCcchHHHHHHHHHHHHHHHHhh
Q 021109 242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCCDCTAWSLLWRHILFDGS 302 (317)
Q Consensus 242 ~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~~~~~~~~~~~~l~~~~~ 302 (317)
.+.+|.++ +...++.+....++.-+.+|+++|| +||| |+...+.+++.+++++...+
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r----~~~~~g~~~~~~g~~~~~~~ 101 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK----RTIVLGAIVLAIGYFMTGMS 101 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH----HHHHHHHHHHHHHHHHHHHh
Confidence 34567654 3456666777777777889999999 9998 77777777777777655443
No 124
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=85.31 E-value=0.88 Score=45.90 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=45.7
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWL 310 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~ 310 (317)
+.+++..++.+.+|-+.+|.++|++||| +++.++.++..+|-++.+.+-.+..+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk----~~l~~~~~~~~iG~ii~~~a~~~~~l~~ 147 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK----KTLLLAVVLFLIGAIIIALAPSWYQLIV 147 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5899999999999999999999999998 6777777777888777776655544443
No 125
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=85.24 E-value=1.7 Score=42.59 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL 292 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~ 292 (317)
.|+.+...+ +.+|...-+++- ..++.++++.++ .....+...++..++.+..|.+.||++|| |...++.+++
T Consensus 4 ~~~~~~~~f-~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r----~~~~~g~~l~ 78 (410)
T TIGR00885 4 PFALITSLF-ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK----AGILLGLFLY 78 (410)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHH
Confidence 355444333 334443323222 234445566653 35677888899999999999999999987 6666777777
Q ss_pred HHHHHHHHh
Q 021109 293 LWRHILFDG 301 (317)
Q Consensus 293 ~~~~l~~~~ 301 (317)
+++.+++..
T Consensus 79 ~~g~~l~~~ 87 (410)
T TIGR00885 79 ALGAFLFWP 87 (410)
T ss_pred HHHHHHHHH
Confidence 777766543
No 126
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=85.15 E-value=1.7 Score=42.65 Aligned_cols=45 Identities=9% Similarity=-0.093 Sum_probs=35.5
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
...++...++..+|-+.+|.++||+||| |...++..+++++.+..
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr----~~~~~~~~l~~i~~~~~ 102 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRR----DSLKIAAVLFFISALGS 102 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998 66655555555554433
No 127
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=84.88 E-value=2.1 Score=40.85 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=22.4
Q ss_pred hHHHHHhhhhcccccccccchhhhhcc
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
...++.++.+.+++...|.++||++||
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~ 288 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPE 288 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345566788889999999999999987
No 128
>PRK03893 putative sialic acid transporter; Provisional
Probab=84.78 E-value=1.5 Score=43.35 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=33.3
Q ss_pred cchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 236 NNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 236 ~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.....+.+ .+|.+. .....++.+++..+|++..|+++||++||
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~ 341 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR 341 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34455553 566653 45688889999999999999999999887
No 129
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=84.78 E-value=2.8 Score=40.52 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=43.3
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhh
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY 275 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~ 275 (317)
.++.++++.+|.+.+..++..+..........+ +.+.+|.+. .....+..++++.+|++..|.+.||.
T Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~ 279 (394)
T PRK10213 209 TFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS 279 (394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467889999999877655544333222233333 334566653 34567777788888888888877763
No 130
>PRK10489 enterobactin exporter EntS; Provisional
Probab=84.73 E-value=2.8 Score=40.54 Aligned_cols=85 Identities=14% Similarity=-0.062 Sum_probs=47.0
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
+..++++.+|.+++..++....+ .+........+. ++.+. .....++.++++.+|++..|.++|+..++ |.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~----~~l 292 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG----LLM 292 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc----hHH
Confidence 44667777776665444332221 122223334454 56543 34567788888999999999888864332 334
Q ss_pred HHHHHHHHHHHHH
Q 021109 286 DCTAWSLLWRHIL 298 (317)
Q Consensus 286 ~~~~~~~~~~~l~ 298 (317)
..+..+.+++.++
T Consensus 293 ~~~~~~~~~~~~~ 305 (417)
T PRK10489 293 LLSTLGSFLAVGL 305 (417)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 131
>PRK11043 putative transporter; Provisional
Probab=84.54 E-value=1.5 Score=42.10 Aligned_cols=72 Identities=8% Similarity=0.036 Sum_probs=44.9
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.++++++|...+.+.+..+.-..+.+-...+.++.|.+.. ........++..+|++..+.+.||++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~ 268 (401)
T PRK11043 195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE 268 (401)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 35678888999877665554443323333333445556666532 3344455667778888888888888765
No 132
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=84.00 E-value=1.7 Score=40.91 Aligned_cols=56 Identities=20% Similarity=0.082 Sum_probs=40.2
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI 297 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l 297 (317)
+..+.++++.+. .....++..+...++.+..|.++||++|| |...++.++.+++.+
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~ 80 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE----RSVAAGLLLIAAGIL 80 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch----HHHHHHHHHHHHHHH
Confidence 345667777653 45788999999999999999999999997 444444444444433
No 133
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=83.72 E-value=1.6 Score=42.10 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=40.0
Q ss_pred HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHHHH
Q 021109 244 ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHILF 299 (317)
Q Consensus 244 a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l~~ 299 (317)
.+|.+. ..+..++..++.++.-...|.++||.++|++-.|+| .++....+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 345443 346778888999999999999999987776666888 45555555555443
No 134
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=83.47 E-value=1.7 Score=41.86 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=43.7
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhhe-eecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~ 278 (317)
++.+.+|++++|.+.+..++....... ...+...+.+..|.+.. ....+..+ +...+|.+..|.+.||+++|
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~ 276 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY 276 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346788999999877765554332221 11222234455666543 23333444 34788899999999999876
No 135
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=82.91 E-value=15 Score=40.58 Aligned_cols=72 Identities=25% Similarity=0.252 Sum_probs=52.8
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++...+++.+|.+.+.+++....+.++......+.+. ++.+. ...+.+..+++..+|.++.|.++|+..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 34567788899998887777666655555556666654 45543 45678899999999999999998876655
No 136
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=82.36 E-value=2.5 Score=40.52 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHH
Q 021109 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTA 289 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~ 289 (317)
.+-||+++++++|-.-+=.-.|.--....+ .+|.+. +...-|.+-.-++.---.+|.++||.|++ -.| +.+.
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n----~~wv~~a~ 338 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN----LWWVASAC 338 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce----ehhHHHHH
Confidence 468999999888765554444443222333 356653 22344444444555566789999999987 445 4455
Q ss_pred HHHHHHHHHHH
Q 021109 290 WSLLWRHILFD 300 (317)
Q Consensus 290 ~~~~~~~l~~~ 300 (317)
+.+..+|..++
T Consensus 339 ~~tl~~H~~l~ 349 (459)
T KOG4686|consen 339 ILTLLGHSGLF 349 (459)
T ss_pred HHHHHHhhhHH
Confidence 55666775443
No 137
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=81.74 E-value=2.7 Score=42.49 Aligned_cols=64 Identities=17% Similarity=0.055 Sum_probs=43.7
Q ss_pred eecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhh----hhccCCCcchHHH-HHHHHHHHHHHHHh
Q 021109 234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH----YVSSQWYPLCCDC-TAWSLLWRHILFDG 301 (317)
Q Consensus 234 ~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~----~~~~~~~~R~~~~-~~~~~~~~~l~~~~ 301 (317)
...++..+.+.+|.+. ....+.+-.+...+.-.+.|.+||| +||| |++.+ ......++.+++..
T Consensus 23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~il~g~~~~~~~l~ll~~ 93 (477)
T TIGR01301 23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPFIAAGAALVAFAVILIGF 93 (477)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHHHHHHHHHHHHHHHHHHh
Confidence 3455666777888764 3456677778889999999999995 7777 77743 34445555555443
No 138
>TIGR00898 2A0119 cation transport protein.
Probab=81.56 E-value=1.6 Score=43.39 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=34.6
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
.+..++..++..+|.+++|.++||+||| |.+.++.++.+++.++.+
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr----~~~~~~~~~~~i~~~~~~ 175 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK----KVLLLSTLVTAVSGVLTA 175 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccch----HHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999997 545555555555544433
No 139
>PRK09952 shikimate transporter; Provisional
Probab=81.02 E-value=3 Score=40.95 Aligned_cols=68 Identities=10% Similarity=-0.057 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhe-eecchhHH-HHHhCCCchh--hHHHHHhhhhcccccccccchhhhhcc
Q 021109 211 AFVKADFWLLWFVYFLGVGAGVT-VLNNLAQI-GVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i-~~a~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++++.+|.+.+...+....+.. ........ .+.++.++.. ....+.++.+.+|.+++|.++||++||
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr 316 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR 316 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 56677777664432222222211 22222222 2345554331 233456677888999999999999987
No 140
>PRK11010 ampG muropeptide transporter; Validated
Probab=80.07 E-value=2.8 Score=42.14 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=41.7
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeec-chhHH-HHHhCCCch--hhHH-HHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQI-GVALGVNDT--TELL-CLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i-~~a~~~~~~--~~~v-sl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.+.++++.+|.+....++.. .+..... -.... .+..|.+.. .... .+..++..+|.++.|.++||+++|
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~-~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~ 289 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYK-LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF 289 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456777777886665443322 2222112 12233 345676543 3333 344578889999999999999986
No 141
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=79.95 E-value=2.7 Score=40.57 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.++++.+. .....+.+.+...++.+..|.++||++||
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr 56 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR 56 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 345667777664 34678888999999999999999999976
No 142
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=79.72 E-value=1.6 Score=45.56 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=53.0
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhh-hhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSL-CNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si-~n~~GRl~~G~lsD~~~~~ 278 (317)
..+++++++.||...+..++..+.-..+..-+....+. ++.+. +..+.++..+ ...+|.++.|.++||++.+
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 35689999999999998888777666666667777765 45542 3455556565 4578999999999999754
No 143
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=79.38 E-value=4.9 Score=40.07 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.4
Q ss_pred hhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 238 LAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 238 ~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
...+.+ .++.+. .....++..++..+|++..|.++||++||
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 316 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR 316 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 444443 346553 23455667788899999999999999987
No 144
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=79.02 E-value=0.072 Score=52.05 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=41.8
Q ss_pred CCHHhhhhhhH----HHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 206 FKLGEAFVKAD----FWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 206 ~t~~~~l~t~~----Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
.++.+.++++. +...+....+....|...+.+ ...+.+..+.++......+..+.+.++-++..++.||+|||
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr 316 (451)
T PF00083_consen 239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRR 316 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455555533 222222333333445333333 34455555555443344566788888999999999999997
No 145
>PRK15011 sugar efflux transporter B; Provisional
Probab=79.02 E-value=4 Score=39.29 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=29.3
Q ss_pred chhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 237 NLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 237 n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
......+ .++.++ .....++..+...+|+++.|.++||++||
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~ 282 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR 282 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 3444443 456553 34556666677788999999999999987
No 146
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=78.90 E-value=7.1 Score=38.98 Aligned_cols=64 Identities=22% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhHHHH
Q 021109 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAF 308 (317)
Q Consensus 241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (317)
+.++.+.+. ..++-|.+++.=+++.+.+|.+|||-..| +...+.+++.++..+++-+..++..|
T Consensus 55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr----~fm~~gLilsai~nil~Gfs~s~~~~ 120 (448)
T COG2271 55 LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR----YFMAFGLILSAIVNILFGFSPSLFLF 120 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc----eeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555543 35789999999999999999999998876 33356666666666666666655544
No 147
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=78.83 E-value=2.4 Score=42.96 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=60.7
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhh-hccCCCcchH
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VSSQWYPLCC 285 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~-~~~~~~~R~~ 285 (317)
.-++-..|||--|--+.. -++.+.+-.-+..+.+|.++ +..+++.++-.-..--++.|+++||+ |+| |++
T Consensus 23 l~~if~vE~WERFsyYGm---raiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~----~tI 95 (498)
T COG3104 23 LYLIFFVELWERFSYYGM---RAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR----RTI 95 (498)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh----HHH
Confidence 456777788887765532 12333333333344455664 34567777777777788999999998 455 888
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 021109 286 DCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~ 303 (317)
.+..+++.+||++++.+.
T Consensus 96 ~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 96 VLGAILMAIGHLVLAISS 113 (498)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999998874
No 148
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=78.46 E-value=2.3 Score=42.64 Aligned_cols=51 Identities=20% Similarity=0.054 Sum_probs=36.6
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCL 305 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~ 305 (317)
.+..+++-++..+|-+++|.+||++||| .....+.++..++.+..+.+...
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk----~~~~~~~~~~~i~~~~~a~a~~~ 171 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRK----PVLLVSLLLFIIFGILTAFAPNY 171 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccH----HHHHHHHHHHHHHHHHHHHhCcH
Confidence 3566777888899999999999999996 44466666666666555444433
No 149
>PRK09952 shikimate transporter; Provisional
Probab=78.07 E-value=4.8 Score=39.50 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=30.2
Q ss_pred hhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhh
Q 021109 259 LCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNC 304 (317)
Q Consensus 259 i~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~ 304 (317)
++..+|.+..|.++||+||| |.+.++.++.+++.++.+...+
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~~~~~~~~~ 116 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRK----RMLMLTVWMMGIATALIGLLPS 116 (438)
T ss_pred HHHhhHHHHHHHHHHhhccH----HHHHHHHHHHHHHHHHHhcCCc
Confidence 44567778899999999998 6666666666776665555444
No 150
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=77.27 E-value=2.7 Score=41.18 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=36.9
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI 297 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l 297 (317)
..+.+..|.+. ......+.++.+.+|.+..|.++||++|| +....+.++++++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r----~~~i~~~~~~~v~~~ 351 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK----PLQIIGALGMAIGMF 351 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHhHHHHHHHHH
Confidence 45556666653 34455678889999999999999999986 333444444444443
No 151
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=76.43 E-value=7.2 Score=36.70 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 243 ~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++.+. .....++.++...+|++..|.++||++||
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~ 304 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR 304 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3456553 34677888999999999999999999987
No 152
>PRK09848 glucuronide transporter; Provisional
Probab=75.21 E-value=4.3 Score=39.83 Aligned_cols=35 Identities=9% Similarity=-0.076 Sum_probs=31.0
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
....++..++.++.-+.+|.++||.++|++-.|+|
T Consensus 47 g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 47 GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 46777888999999999999999998887777988
No 153
>PRK15011 sugar efflux transporter B; Provisional
Probab=72.48 E-value=9.9 Score=36.51 Aligned_cols=37 Identities=5% Similarity=-0.025 Sum_probs=22.9
Q ss_pred HHHHhCCCch--hhHHHHHhh-hhcccccccccchhhhhcc
Q 021109 241 IGVALGVNDT--TELLCLFSL-CNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 241 i~~a~~~~~~--~~~vsl~si-~n~~GRl~~G~lsD~~~~~ 278 (317)
+.++++.+.. .+.++...+ ...++.+..|. +||++||
T Consensus 42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r 81 (393)
T PRK15011 42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDR 81 (393)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccch
Confidence 4566776543 334444444 44556666777 8999998
No 154
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=71.91 E-value=2.3 Score=33.06 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHhhhhcccccccccchhhhhcc
Q 021109 255 CLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 255 sl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..++.+.++....|.+.||++||
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~ 28 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRK 28 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchh
Confidence 345677888899999999999887
No 155
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=71.75 E-value=6.3 Score=39.29 Aligned_cols=46 Identities=15% Similarity=-0.007 Sum_probs=33.6
Q ss_pred HHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhh
Q 021109 255 CLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNC 304 (317)
Q Consensus 255 sl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~ 304 (317)
++.-++-.+|-+.+|.++||+||| |...++.++++++.++.+...+
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr----~~l~~~~~l~~i~~~~~a~~~~ 109 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQ----KILAITIVIMSISTFCIGLIPS 109 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHhccc
Confidence 444466778999999999999998 6666677777777665555433
No 156
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=69.74 E-value=2.3 Score=43.03 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=24.1
Q ss_pred HHhhhhcccccccccchhhhhccCCCcchH
Q 021109 256 LFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 256 l~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
.-.++|.+|.+++|++.|++|||+.+-..+
T Consensus 92 ~A~vGti~GQl~FG~lgD~~GRK~vYG~~l 121 (538)
T KOG0252|consen 92 AALVGTIFGQLFFGWLGDKFGRKKVYGKEL 121 (538)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence 445789999999999999999995554333
No 157
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=68.74 E-value=15 Score=37.04 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=62.7
Q ss_pred hhhhhHHHHHHHHHHHhhhhh-heeecchhHHHHHhCCCch-hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHH
Q 021109 211 AFVKADFWLLWFVYFLGVGAG-VTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCT 288 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~G-l~~i~n~~~i~~a~~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~ 288 (317)
..+++-++..-+..+-.. +| ..+++-..+|.+..|.++. .....+.++.|.++=++.+++-||++|| +....+
T Consensus 291 ~~~~~~~i~~~l~~fqq~-tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr----~lll~s 365 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQL-TGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRR----KLLLFG 365 (513)
T ss_pred chHHHHHHHHHHHHHHHH-hCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHh
Confidence 344455666666665555 55 5577778888888888754 5666678888999988889999999885 344666
Q ss_pred HHHHHHHHHHHHhhhhH
Q 021109 289 AWSLLWRHILFDGSNCL 305 (317)
Q Consensus 289 ~~~~~~~~l~~~~~~~~ 305 (317)
...+++++++++.....
T Consensus 366 ~~~m~~~~~~~~~~~~~ 382 (513)
T KOG0254|consen 366 AAGMSICLVILAVVGVF 382 (513)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777666554443
No 158
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=68.40 E-value=2 Score=44.90 Aligned_cols=60 Identities=5% Similarity=-0.032 Sum_probs=44.2
Q ss_pred hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhh
Q 021109 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGS 302 (317)
Q Consensus 239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~ 302 (317)
.+|-+.++.+. ..+.+|...+++.++-+..|++.||.+|+ |.+.++.+++++|.++++.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~----~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP----IVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc----eEEEecHHHHHHHHHHHhCh
Confidence 34555566553 34688899999999999999999998886 54456666777777766654
No 159
>PRK10054 putative transporter; Provisional
Probab=67.72 E-value=17 Score=35.05 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=35.8
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCC--ch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN--DT--TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~--~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++.++++++|.+.+..++.....-.+.....+..... +.+ .. ....++.++.-...+...|.++||.++|
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 274 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR 274 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch
Confidence 5788999999888776664444333333333333322 211 11 2344444444444555555666665543
No 160
>PRK10429 melibiose:sodium symporter; Provisional
Probab=67.32 E-value=4.1 Score=40.49 Aligned_cols=70 Identities=9% Similarity=-0.155 Sum_probs=37.7
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC-c-hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN-D-TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~-~-~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..++++.|+.+.+..++......+.........+....+ + ...+.++.++...++-+++|.++||++||
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk 296 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR 296 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 3455777887777665554432222111111111111111 1 12344555577778888899999999987
No 161
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=67.22 E-value=7.8 Score=42.92 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=40.6
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc-------hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND-------TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~-------~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
++++++.+|+.+|+..++..-.--++...+..+.. .+..+. .++..++..+...+.-.++|.++||++||+
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~ 83 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAK 83 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHH
Confidence 35788889998887765544321121111121111 221111 123444555667778888999999999983
No 162
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=67.03 E-value=1.5 Score=42.68 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=35.2
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhh
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~ 303 (317)
....+...++..+|-++.|.++||+||| +.+.++..++.++.++...+.
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk----~~~~~~~~~~~i~~~~~~~~~ 97 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRK----PALIISALLMIIGSILIAFAP 97 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccc----ccccccccccccccccccccc
Confidence 3567788888999999999999999998 444445555555555444443
No 163
>PRK09669 putative symporter YagG; Provisional
Probab=66.99 E-value=5 Score=39.36 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=38.7
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHh-CCCch-hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VAL-GVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~-~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..++.+|++.||.+.+..++...+ ....+...... +.. +.++. ........+...+|-++++.++||++||
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~ 294 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTA-VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV 294 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH-HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 346778999999987765543222 21122222111 111 11121 1222333455667888889999999887
No 164
>PRK11010 ampG muropeptide transporter; Validated
Probab=66.07 E-value=10 Score=38.07 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=34.5
Q ss_pred hhhhhheeecchhH-HHHHhCCCchh-hHHHHHhhhhcccccccccchhhh-----hccCCCcchH-HHHHHHHHHHH
Q 021109 227 GVGAGVTVLNNLAQ-IGVALGVNDTT-ELLCLFSLCNFAGRLGSGVLSEHY-----VSSQWYPLCC-DCTAWSLLWRH 296 (317)
Q Consensus 227 ~~g~Gl~~i~n~~~-i~~a~~~~~~~-~~vsl~si~n~~GRl~~G~lsD~~-----~~~~~~~R~~-~~~~~~~~~~~ 296 (317)
..|....+++..-+ ..++.|.+... ...++++.. .++++++|.++||+ ||| |.| .++++.++++.
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grr----r~~ll~~~i~~~~~~ 95 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRR----RGWLLATQLLLLVAI 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCc----hHHHHHHHHHHHHHH
Confidence 34444444444333 33444444221 122333333 26899999999999 666 666 45555554443
No 165
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=65.95 E-value=5.9 Score=39.59 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
....+...++..+|.+.+|.++||+|||
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr 86 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRK 86 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 4678888899999999999999999998
No 166
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=65.69 E-value=5.7 Score=42.49 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.0
Q ss_pred HHHHhhhhcccccccccchhhhhcc
Q 021109 254 LCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+.++....|.++.|+++||+|||
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr 625 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRL 625 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4566688899999999999999997
No 167
>PF12832 MFS_1_like: MFS_1 like family
Probab=65.30 E-value=8.4 Score=28.78 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 221 WFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 221 ~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
|+.++++.|+=.-++. -..++.|.+. ..+..++.-+...++..++|.+.||.+|+
T Consensus 9 yf~~f~~~g~~~Pfl~---~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLP---LYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHhhhh---HhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 3444555555443433 2345567663 34677777788999999999999999987
No 168
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=64.74 E-value=9 Score=36.57 Aligned_cols=48 Identities=13% Similarity=-0.168 Sum_probs=35.6
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
+....+++|.+. ....+++.++...++.+.+|.++||++|+....|..
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~ 76 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLL 76 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHH
Confidence 345567777653 456888999999999999999999999854333443
No 169
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=64.34 E-value=8.8 Score=38.07 Aligned_cols=55 Identities=24% Similarity=0.169 Sum_probs=39.5
Q ss_pred hHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWL 310 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~ 310 (317)
..-|.+++..++.-..+|.+||+.||| -.+.+.....++..++.+.+..-++|..
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRk----pvll~c~~~va~s~ll~~~S~~F~afv~ 126 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRK----PVLLACLIGVALSYLLWALSRNFAAFVL 126 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999996 2224455555666666666665555544
No 170
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=64.14 E-value=9.7 Score=38.46 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=48.7
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH--hCCCchh--hHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA--LGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a--~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++++.-|.++.+.+.+.+++- .-|+..+...+.+... ++.+... ...-+..+.+..|-+++|++.||++.|
T Consensus 273 t~k~~~~~~~~~~fLia~~l~-~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLY-SDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 556666667777766655543 3555555666666544 6776543 355566788999999999999999876
No 171
>PRK09848 glucuronide transporter; Provisional
Probab=63.93 E-value=6.3 Score=38.64 Aligned_cols=88 Identities=11% Similarity=-0.110 Sum_probs=45.8
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCch-hhHHHHH-hhhhcccccccccchhhhhccCCCcch
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDT-TELLCLF-SLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~~-~~~vsl~-si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
+++.+|++.|+.+.+..++...+-...........+. ++.++. ..+..+. .+...++-.++|.++||+++| |.
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----~~ 296 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK----NT 296 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HH
Confidence 4678899999988776666544322222222222232 232221 1111122 344556677777788888765 55
Q ss_pred HHHHHHHHHHHHHHH
Q 021109 285 CDCTAWSLLWRHILF 299 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~ 299 (317)
+.++.++..++.+++
T Consensus 297 ~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 297 FLIGALLGTCGYLLF 311 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554433
No 172
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=63.88 E-value=5 Score=39.17 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=26.2
Q ss_pred hhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 259 LCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 259 i~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
++..+|-+.+|.++||+||| |...++.++++++.++.+
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~~~~~ 111 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRK----KSMLISVCMMCFGSLVIA 111 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHh
Confidence 33447778899999999998 555555555555555443
No 173
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=63.24 E-value=16 Score=35.77 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=29.3
Q ss_pred HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 243 ~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+++|.+. ..+..++..++..++.+.+|.++||++|+
T Consensus 31 ~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~ 68 (418)
T TIGR00889 31 KTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSA 68 (418)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456553 35788999999999999999999999765
No 174
>PRK15075 citrate-proton symporter; Provisional
Probab=63.13 E-value=9.1 Score=37.35 Aligned_cols=39 Identities=10% Similarity=-0.134 Sum_probs=28.2
Q ss_pred cccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhh
Q 021109 262 FAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNC 304 (317)
Q Consensus 262 ~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~ 304 (317)
.+|-+.+|.++||++|| |.+..+.++++++.++.+...+
T Consensus 70 ~ig~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~~l~~~~~~ 108 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRR----KGLIVTLSIMASGTLLIAFVPG 108 (434)
T ss_pred hhHHHHHHHHhhhhchH----HHHHHHHHHHHHHHHHHHhCCc
Confidence 45678899999999998 6666666666776666555443
No 175
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=60.02 E-value=12 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=33.0
Q ss_pred cchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 236 ~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
--+..+.+++|.+. ....+++..+...++-..+|.++||.+|+
T Consensus 25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~ 69 (382)
T TIGR00902 25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHI 69 (382)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 33666778887764 34677788888888889999999999864
No 176
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=59.26 E-value=10 Score=38.58 Aligned_cols=27 Identities=19% Similarity=0.500 Sum_probs=25.0
Q ss_pred hHHHHHhhhhcccccccccchhhhhcc
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..||++.+++.+|-+..|.+.|++|||
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 578899999999999999999999998
No 177
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=58.86 E-value=8.8 Score=35.73 Aligned_cols=39 Identities=10% Similarity=-0.073 Sum_probs=28.1
Q ss_pred hcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhh
Q 021109 261 NFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 261 n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~ 303 (317)
..+|-+..|.++||++|| |.+.++.++.+++.+++....
T Consensus 48 ~~i~~~~~G~l~dr~g~r----~~l~~~~~~~~~~~~~~~~~~ 86 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRK----KTLVITLLMMGIGTLLIGLLP 86 (394)
T ss_pred hhhHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHhhCC
Confidence 346788899999999997 666666666666666555443
No 178
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=58.85 E-value=16 Score=36.38 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=41.3
Q ss_pred HHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHHHHHhhh
Q 021109 243 VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 243 ~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l~~~~~~ 303 (317)
++++.+ +..+++++=.+...+-|+.-|++.||+|-| .| +++.+++.+.++.++.+.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR-----~~~~~s~~l~~IP~~~~~~a~ 100 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR-----KWTILSMLLLLIPCLGLAFAV 100 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch-----HHHHHHHHHHHHHHHHHHHHc
Confidence 455555 346789999999999999999999999874 44 666666666666555443
No 179
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=58.63 E-value=16 Score=34.77 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=32.5
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecc-hhHHHHH-hCCCchhhHHHHHhhhhcccccccccchhhhhccC
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
.++.++++.+|.+.+..++.. .+...... ...+.++ ++.+.. ..++....+..|.++.+.+.+++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~ 270 (394)
T PRK11652 200 YRTLLSNRRFNCYLLMLIGTL-AGIAVFEACSGVLMGAVLGLSSM--TVSILFILPIPAAFFGAWFAGRPNKRF 270 (394)
T ss_pred HHHHHcChHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887655443322 22222111 2223333 555432 233333344555555555556665543
No 180
>PRK09669 putative symporter YagG; Provisional
Probab=58.57 E-value=17 Score=35.53 Aligned_cols=46 Identities=7% Similarity=-0.168 Sum_probs=34.8
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchHH-HHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCD-CTAWSLLWRH 296 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~-~~~~~~~~~~ 296 (317)
....++.-++.++.=.+.|.++||...|++-.|+|. .+...+++..
T Consensus 48 g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 48 GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 467778888999999999999999887777779993 3444444443
No 181
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=57.60 E-value=14 Score=37.83 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCC-------CchhhHHHHHhhhhc----ccccccccchhhhh
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGV-------NDTTELLCLFSLCNF----AGRLGSGVLSEHYV 276 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~-------~~~~~~vsl~si~n~----~GRl~~G~lsD~~~ 276 (317)
.+.-+|+++|..+|+.-.+ +|+|.-.+..+. +.....+++...... +--+.+|.+.|++.
T Consensus 3 ~~aplr~~~Fr~lw~a~~i---------S~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 3 AFAPLRNRNFRRLWIAQLI---------SNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred CcccccCchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3567899999999986643 344443333221 222345555544444 44466799999999
Q ss_pred ccCCCcchHHHHHH
Q 021109 277 SSQWYPLCCDCTAW 290 (317)
Q Consensus 277 ~~~~~~R~~~~~~~ 290 (317)
|| |.+..+.+
T Consensus 74 rr----rili~~~~ 83 (524)
T PF05977_consen 74 RR----RILILSQL 83 (524)
T ss_pred ch----HHHHHHHH
Confidence 98 55544433
No 182
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=55.94 E-value=16 Score=35.03 Aligned_cols=65 Identities=11% Similarity=-0.079 Sum_probs=35.8
Q ss_pred hhhhheeecchhH-HHHHhCCCch--hhHHHHHhhhhcccccccccchhhh-----hccCCCcchH-HHHHHHHHHHHHH
Q 021109 228 VGAGVTVLNNLAQ-IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHY-----VSSQWYPLCC-DCTAWSLLWRHIL 298 (317)
Q Consensus 228 ~g~Gl~~i~n~~~-i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~-----~~~~~~~R~~-~~~~~~~~~~~l~ 298 (317)
.|....++...-+ +.++.|.+.. .++.++... .+..+++|.++||+ +|| |.| .++.+.++++...
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r----r~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR----RGWLLLTQVGLAASIAA 84 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc----hhHHHHHHHHHHHHHHH
Confidence 3444443333333 3356676633 223333333 47889999999999 665 656 4555555444433
No 183
>PRK10429 melibiose:sodium symporter; Provisional
Probab=54.74 E-value=24 Score=35.04 Aligned_cols=46 Identities=7% Similarity=-0.245 Sum_probs=32.6
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRH 296 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~ 296 (317)
.....+..+++++.=.++|.+|||...|++-.|+| ..+...++++.
T Consensus 45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34566677888888889999999775555555999 44555555554
No 184
>TIGR00901 2A0125 AmpG-related permease.
Probab=52.76 E-value=19 Score=33.62 Aligned_cols=58 Identities=14% Similarity=-0.143 Sum_probs=30.7
Q ss_pred hHHHHHhCCCchhh-HHHHHhhhhcccccccccchhhhh-ccCCCcchH-HHHHHHHHHHHH
Q 021109 239 AQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHYV-SSQWYPLCC-DCTAWSLLWRHI 297 (317)
Q Consensus 239 ~~i~~a~~~~~~~~-~vsl~si~n~~GRl~~G~lsD~~~-~~~~~~R~~-~~~~~~~~~~~l 297 (317)
..+.+++|.+.... ..+...+...+ ++++|.++||+. |+.+-.|+| ..+.++.++..+
T Consensus 12 ~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 12 PYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence 34566777664321 22333333333 899999999983 112222666 444554444433
No 185
>PRK11462 putative transporter; Provisional
Probab=52.48 E-value=23 Score=35.14 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCch-hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+++.++++.|+.+....++....-.+.-.......+.. +..+. +.+..+..+.+.+|=++++.++||++||
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk 293 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV 293 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 34567777777765444333222111112222222322 22221 2344566677888888999999999876
No 186
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=51.31 E-value=19 Score=35.84 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhHHH---HHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchH-
Q 021109 212 FVKADFW---LLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC- 285 (317)
Q Consensus 212 l~t~~Fw---~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~- 285 (317)
.|+.+|| +.++.+++.+|+-+-.. .--..+..|.+ +..+..|..+++..+.-.+.|.++||++.| |..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~--~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k----K~Ll 77 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFF--PIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLK----KHLL 77 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC----SHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH--HHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhh----HHHH
Q ss_pred -HHHHHHHHHHHHHH
Q 021109 286 -DCTAWSLLWRHILF 299 (317)
Q Consensus 286 -~~~~~~~~~~~l~~ 299 (317)
.++.++...+-+++
T Consensus 78 ~~i~~l~~l~~pff~ 92 (412)
T PF01306_consen 78 WFIAILLLLFGPFFI 92 (412)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 187
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=50.16 E-value=31 Score=34.43 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=27.9
Q ss_pred HHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHH
Q 021109 254 LCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRH 296 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~ 296 (317)
+-+.|..-+=|-+++|.+-|++||| .++.+.+.+.++-.
T Consensus 387 llitslaefPGlLIt~~iverlGRK----kTMal~l~~f~ifl 425 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRK----KTMALSLILFGIFL 425 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcch----hHHHHHHHHHHHHH
Confidence 4456677899999999999999999 44444444444433
No 188
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=48.39 E-value=49 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=23.5
Q ss_pred cCC-CCCchhHHHHHHhhhhHHHHHHHHHHHHcC
Q 021109 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQ 35 (317)
Q Consensus 3 nFP-~~RG~vvgi~k~~~GLSaaifs~i~~~ff~ 35 (317)
.+| ++||++.++......+++.+-..+.....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 456 458888888888888887777666655543
No 189
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=46.95 E-value=70 Score=31.91 Aligned_cols=75 Identities=24% Similarity=0.227 Sum_probs=57.5
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPL 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R 283 (317)
+..++.+++.+|.--+..+|=.|+..++=+-+.+...+ .|.++ ++.++|..=++-.+||++.-.+-.++ +-.|
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~----~~~k 303 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI----KPEK 303 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CHHH
Confidence 67899999999999999999999999988888888877 55453 46788988899999995444332344 3335
Q ss_pred hH
Q 021109 284 CC 285 (317)
Q Consensus 284 ~~ 285 (317)
.+
T Consensus 304 ~L 305 (422)
T COG0738 304 YL 305 (422)
T ss_pred HH
Confidence 55
No 190
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=45.64 E-value=49 Score=32.14 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=25.4
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCC
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN 248 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~ 248 (317)
.++.+|++.||...+.+++....-..+..-...+.++. +.+
T Consensus 211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s 252 (413)
T PRK15403 211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMT 252 (413)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCC
Confidence 46789999999988776655443333333344566654 554
No 191
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=45.49 E-value=54 Score=32.20 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+...+++..+...|+=+.+ .+...++.|.+. .....++..+...++-.++|.++||..++
T Consensus 6 rLs~~~f~~f~~~G~~~p~---~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~ 67 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPY---LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA 67 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 4455566666677765544 345667778763 35678888888899999999999988654
No 192
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=45.02 E-value=22 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.7
Q ss_pred hHHHHHhhhhcccccccccchhhhhccC
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSSQ 279 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~~ 279 (317)
...+.+.+...++.+..|.++||+++|+
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~ 107 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKW 107 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcch
Confidence 4566677778888899999999999873
No 193
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=43.83 E-value=40 Score=33.15 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=54.2
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHHhCC-CchhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGV-NDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC 284 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~~~-~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~ 284 (317)
+.++.+|+++++..++..++ .+......++-..+ .+++|. +.... ..+.+ .+.+.=+..=.+++|+.||++..+.
T Consensus 199 ~~~~llk~~~~~~Fll~~~l-~~~~~~~~~~f~~~yl~~~gg~~~~~~-g~~~~-l~~~aEi~~f~~~~~~~~r~g~~~l 275 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFL-IGISHAAYYTFFSIYLQELGGYSGSTI-GILWA-LGVVAEIPFFFFSGRFLKRFGIKWL 275 (400)
T ss_pred HHHHHhcCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccchhhHH-HHHHH-HHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 44789999999876665544 44444445555554 467773 32211 11222 2223455555678899998887666
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021109 285 CDCTAWSLLWRHILFDGS 302 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~ 302 (317)
..++....++-..+++..
T Consensus 276 l~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 276 LLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666666555555443
No 194
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.37 E-value=25 Score=30.42 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=51.8
Q ss_pred chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhHHHHhhhhccc
Q 021109 249 DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWP 315 (317)
Q Consensus 249 ~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 315 (317)
...++++++.+.-.+|-++|..-+|.-.||-+-..+|..-..++.+|++++...+++..|--++..|
T Consensus 74 p~~iilglivvvlvi~~liwa~~~~a~~krmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~P 140 (188)
T KOG4050|consen 74 PQDIILGLIVVVLVIGTLIWAASADANIKRMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFP 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888899999999999887777788665666788888888777777766666555
No 195
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=43.32 E-value=37 Score=33.98 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.0
Q ss_pred HhCCCchh--hHHHHHhhhhcccccccccchhhhhcc
Q 021109 244 ALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 244 a~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
++|.++.. ++-...++....|-++.|++.||++-|
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k 318 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK 318 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 46666443 455567788899999999999999877
No 196
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.76 E-value=38 Score=33.93 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=38.3
Q ss_pred ccCCCC--CchhHHHHHHhhhhHHH---HHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeeeccC
Q 021109 2 RNFPLS--RGTVSGILKGYAGIAAA---IYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACT 64 (317)
Q Consensus 2 ~nFP~~--RG~vvgi~k~~~GLSaa---ifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p 64 (317)
+.||++ ||.|.|+..+|.+|+-- -|.-+-+-+. +....|+ .|+++..+-+.+-.+.+++..
T Consensus 186 d~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFl-VL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 186 DVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFL-VLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHH-HHHHHHHHHHHHHHheeCccc
Confidence 468865 79999999999999833 3333333332 3455554 456666666666666665433
No 197
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=36.76 E-value=5.2e+02 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHhhhhcccccccccchhhhh
Q 021109 253 LLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 253 ~vsl~si~n~~GRl~~G~lsD~~~ 276 (317)
.....+.+.++|-++.|.+.-+++
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir 377 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIR 377 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcc
Confidence 445566667777777888765554
No 198
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=36.49 E-value=70 Score=29.53 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHhhhhhheeecc--hhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHH
Q 021109 224 YFLGVGAGVTVLNN--LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHI 297 (317)
Q Consensus 224 ~~~~~g~Gl~~i~n--~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l 297 (317)
+.+...+|..+... ..++-+++++++. +.+-..-.++..+| +..|.+.|+.+. |.. .++..+..+|+.
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp-----~~~l~iG~~~~~~GY~ 81 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP-----WVVLLIGAVLGFVGYG 81 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 33445555555443 3445566777643 23444445666776 888999998874 333 555555566654
No 199
>PF13347 MFS_2: MFS/sugar transport protein
Probab=35.29 E-value=27 Score=33.98 Aligned_cols=50 Identities=14% Similarity=-0.117 Sum_probs=34.7
Q ss_pred hhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHHHHH
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHILFD 300 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l~~~ 300 (317)
.+...+..+++++-=.+.|.+|||...|++-.|+| ..+..+.+++..++.
T Consensus 40 g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf 90 (428)
T PF13347_consen 40 GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF 90 (428)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence 34556667889999999999999554444444889 566666666654444
No 200
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=33.38 E-value=1.1e+02 Score=31.52 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhhhheeecchhH----HHHHhCCCch---hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 218 WLLWFVYFLGVGAGVTVLNNLAQ----IGVALGVNDT---TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 218 w~l~~~~~~~~g~Gl~~i~n~~~----i~~a~~~~~~---~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
|..-..+.|.-|.=-.+=.|.+. +.+++|.++. ....+.+...-.+.-+.+|.++||++-|
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K 92 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK 92 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 44444444444433334444443 3445566533 4678888899999999999999999987
No 201
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=33.33 E-value=94 Score=29.95 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHhhhhhhHHHHHHHHHH
Q 021109 208 LGEAFVKADFWLLWFVYF 225 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~ 225 (317)
+.+.++++.||.+.+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (400)
T PRK11646 201 MTRVLRDKRFVTYVLTLT 218 (400)
T ss_pred HHHHHcCchHHHHHHHHH
Confidence 456778888886655443
No 202
>PRK11462 putative transporter; Provisional
Probab=31.84 E-value=52 Score=32.66 Aligned_cols=46 Identities=9% Similarity=-0.134 Sum_probs=33.6
Q ss_pred hHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHH
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHI 297 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l 297 (317)
+...+--++.++-=.+.|.+|||...|++-.|+| ..+...++++..
T Consensus 49 ~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 49 TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 4555666788888899999999988777777999 445455555543
No 203
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=28.69 E-value=26 Score=35.40 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+..+.+++.+|-++.+.+.++.|.=-.....+-....-.|++ .+...-.+.-+...+|-+.+|.+-||..+-
T Consensus 258 si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f 331 (480)
T KOG2563|consen 258 SIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF 331 (480)
T ss_pred HHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 566888999999998887665554222222222222223554 334455566677899999999999998653
No 204
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=27.73 E-value=28 Score=35.47 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=67.3
Q ss_pred CCCCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH--HHhCCCchhhHHHHHhhhhcccccccccchhhhhccCCC
Q 021109 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWY 281 (317)
Q Consensus 204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~ 281 (317)
+++++-+......+|.+.+.+....|.+.-+++....-. +-+|..++.+.-.++++.+-.+|+..+.++-....-++.
T Consensus 374 ~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~ 453 (488)
T KOG2325|consen 374 EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGP 453 (488)
T ss_pred ccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCc
Confidence 367888888899999999999999999998888765533 446766666777788889999999999999888888888
Q ss_pred cchHH
Q 021109 282 PLCCD 286 (317)
Q Consensus 282 ~R~~~ 286 (317)
.+.|.
T Consensus 454 ~~v~~ 458 (488)
T KOG2325|consen 454 RPVWI 458 (488)
T ss_pred cHHHH
Confidence 77773
No 205
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=26.04 E-value=1.7e+02 Score=28.89 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH-H
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-D 286 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~ 286 (317)
...|++.=|.+-+.|...+..=-.++.=+.+|..+.|.+. +..++|+..+....+-+....+-+| .+-+|++ .
T Consensus 203 ~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R----~~n~r~~~~ 278 (395)
T COG2807 203 KVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARR----SKNQRPLVV 278 (395)
T ss_pred ccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHH----hcccchHHH
Confidence 4677777887777666666666667788899999999874 4568888888877777776666554 4445777 4
Q ss_pred HHHHHHHHHHH
Q 021109 287 CTAWSLLWRHI 297 (317)
Q Consensus 287 ~~~~~~~~~~l 297 (317)
+..+++.+|..
T Consensus 279 ~~~~~~l~G~~ 289 (395)
T COG2807 279 LALLLMLVGLV 289 (395)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 206
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=25.45 E-value=99 Score=31.36 Aligned_cols=30 Identities=10% Similarity=-0.131 Sum_probs=21.3
Q ss_pred cccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109 264 GRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI 297 (317)
Q Consensus 264 GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l 297 (317)
|=+++..++++++|| +.+..+.++.+++.+
T Consensus 288 ~~~~~p~L~~~~gkk----~~~~~~~~~~~i~~~ 317 (467)
T COG2211 288 GLILWPRLVKKFGKK----KLFLIGLLLLAVGYL 317 (467)
T ss_pred HHHhHHHHHHHhchH----HHHHHHHHHHHHHHH
Confidence 367778888888877 777666666666654
No 207
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=23.65 E-value=1.4e+02 Score=29.68 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHc---C---CChhHHHHHHHHHHHHHHHhhheeeeccCC
Q 021109 6 LSRGTVSGILKGYAGIAAAIYTVLYNMVL---Q---NSATTLLLFLALGIPLICLVTTYFIRACTP 65 (317)
Q Consensus 6 ~~RG~vvgi~k~~~GLSaaifs~i~~~ff---~---~d~~~fllfLa~~~~~v~ll~~~fir~~p~ 65 (317)
.++|++-|+.-++.+|+..+-+.+..... + +|-..+.++ -+.+.+..++..+++-+.|.
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~-i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL-ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH-HHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999888776433332 2 344444443 33344455666666667775
No 208
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=23.13 E-value=1.2e+02 Score=30.91 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC-chhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC 285 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~-~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~ 285 (317)
.++|.+++.+....|.|+-++.+-+.......+. ...+...+...+.++|-++.+.+...+..++++..+.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~ 203 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGAL 203 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHH
Confidence 3699999999999999998888887766664443 4567788888889999999999998888887775544
No 209
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.26 E-value=1.2e+02 Score=24.23 Aligned_cols=55 Identities=27% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCchhHHHHHHhhhhHHHHHHHHHHHHcCC----ChhHHHHHHHHHHHHHHHhhheeeeccCC
Q 021109 7 SRGTVSGILKGYAGIAAAIYTVLYNMVLQN----SATTLLLFLALGIPLICLVTTYFIRACTP 65 (317)
Q Consensus 7 ~RG~vvgi~k~~~GLSaaifs~i~~~ff~~----d~~~fllfLa~~~~~v~ll~~~fir~~p~ 65 (317)
.|+.|++|-.+.+.+++..|..+...=+++ ..+.-++.+. +++=++.++.|+..-
T Consensus 2 tR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~g----lvgW~~sYlfRV~t~ 60 (104)
T PF11460_consen 2 TRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLG----LVGWVSSYLFRVVTG 60 (104)
T ss_pred cccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHH----HHHHHhHHHhhhccC
Confidence 589999999999999999998887554443 3334444444 366777888898764
No 210
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=22.08 E-value=6e+02 Score=23.09 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=34.9
Q ss_pred chhHHHHHHhhhhHHHHHHHHHHHHcC----CChhHHHHHHHHHHHHHHHhhheeeeccCCCCC
Q 021109 9 GTVSGILKGYAGIAAAIYTVLYNMVLQ----NSATTLLLFLALGIPLICLVTTYFIRACTPASG 68 (317)
Q Consensus 9 G~vvgi~k~~~GLSaaifs~i~~~ff~----~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~ 68 (317)
++++|......|++ +|...+..+.+ .++..-=+.++. ...+++..+++++.||....
T Consensus 73 ~~~~~~~l~g~a~g--l~~~~~~~~~gr~~~~~~~~~al~la~-~GF~av~lvP~LkyPpnpPa 133 (227)
T PF09490_consen 73 QTLLGNVLFGIAFG--LFALAFAFLRGRLGPLSPRRLALLLAA-AGFVAVFLVPFLKYPPNPPA 133 (227)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhcccCCCChHHHHHHHHH-HHHHHHHHHHcccCCCCCCC
Confidence 35677777777776 55555544442 344444444444 44566888999999987653
No 211
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=20.91 E-value=2.7e+02 Score=28.66 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=49.8
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--h--------hhHHHHHhhhhcc-cccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--T--------TELLCLFSLCNFA-GRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~--------~~~vsl~si~n~~-GRl~~G~lsD~~~~~ 278 (317)
.++-+.-=|.++=+.+-..+ -|.+.|.+++|... . +..-.++.+++.+ |=.++.+++|++||+
T Consensus 305 ~Llgt~~~WFllDiafy~~n------L~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk 378 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQN------LFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK 378 (538)
T ss_pred HHHHHHHHHHhhhhhhhccc------cHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH
Confidence 44444445554443333222 25667888777631 1 2344577788888 999999999999987
Q ss_pred CCCcchHHHHHHHHHHHHHHHHh
Q 021109 279 QWYPLCCDCTAWSLLWRHILFDG 301 (317)
Q Consensus 279 ~~~~R~~~~~~~~~~~~~l~~~~ 301 (317)
-.....+.++++-+++++.
T Consensus 379 ----~iq~~GF~~~~i~~~~~~~ 397 (538)
T KOG0252|consen 379 ----YIQLMGFFIMTIFFFVIAG 397 (538)
T ss_pred ----HHHHhhHHHHHHHHHHHcC
Confidence 2225555666666655544
No 212
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=20.26 E-value=3.2e+02 Score=26.16 Aligned_cols=67 Identities=16% Similarity=-0.023 Sum_probs=30.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhh
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~ 276 (317)
+.++++.++...+..++..+++.....-.....+ .++.+. .....+..+++..+|-+..|.+.|+.+
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~ 269 (393)
T PRK11195 200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLET 269 (393)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4556666655444433333332222222222333 345443 234555666666666666655555433
No 213
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=20.14 E-value=2.9e+02 Score=27.00 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCchh---hHHHHHhhhhcccccccccchhhhhcc
Q 021109 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT---ELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~~---~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+|...|.....+-..-=.+.+ ..++..|+++.. +++.=+ ..+.+-....|.+.||+|||
T Consensus 38 ~yl~vY~La~~aDWLQGpY~Y---~LY~~yg~~~~qIa~Lf~~Gf-~Ss~i~g~~~G~laD~~Grk 99 (354)
T PF05631_consen 38 KYLLVYLLAMAADWLQGPYLY---ALYESYGFSEHQIAILFVAGF-ASSAIFGTFVGSLADRYGRK 99 (354)
T ss_pred HHHHHHHHHHHHHHhhcchhH---HHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCch
Confidence 555555544433333222333 245556665321 222211 12334455668889999998
No 214
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=20.06 E-value=2.7e+02 Score=23.60 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=23.6
Q ss_pred hhHHHHHhhhhcccccccccchhhhhcc
Q 021109 251 TELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
....+...+...++.+..|.++|+.+||
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 69 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRR 69 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccch
Confidence 4677777888888889999999999776
Done!