Query 021109
Match_columns 317
No_of_seqs 177 out of 763
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 97.7 0.00015 5.1E-09 68.2 10.2 87 207-297 250-340 (438)
2 1pw4_A Glycerol-3-phosphate tr 97.1 0.00053 1.8E-08 64.6 5.4 71 208-278 245-320 (451)
3 2cfq_A Lactose permease; trans 95.8 0.0042 1.5E-07 58.8 3.3 69 210-278 2-73 (417)
4 4aps_A DI-OR tripeptide H+ sym 94.9 0.019 6.6E-07 54.7 4.5 85 215-303 13-106 (491)
5 1pw4_A Glycerol-3-phosphate tr 94.5 0.025 8.6E-07 52.9 4.1 83 214-301 27-111 (451)
6 2gfp_A EMRD, multidrug resista 94.3 0.042 1.4E-06 50.3 5.1 60 236-299 21-82 (375)
7 3o7q_A L-fucose-proton symport 94.1 0.065 2.2E-06 49.9 6.0 58 238-299 49-108 (438)
8 2xut_A Proton/peptide symporte 93.7 0.041 1.4E-06 53.0 3.8 85 215-303 12-106 (524)
9 2cfq_A Lactose permease; trans 93.0 0.13 4.3E-06 48.5 6.0 87 208-299 213-306 (417)
10 4gc0_A D-xylose-proton symport 88.6 0.4 1.4E-05 45.3 4.8 45 252-300 59-103 (491)
11 2gfp_A EMRD, multidrug resista 85.6 0.14 4.8E-06 46.8 -0.3 71 207-277 191-264 (375)
12 4aps_A DI-OR tripeptide H+ sym 68.3 4.7 0.00016 37.9 4.6 60 2-61 413-473 (491)
13 4gc0_A D-xylose-proton symport 61.2 10 0.00034 35.4 5.4 66 213-278 274-342 (491)
14 2xut_A Proton/peptide symporte 50.8 27 0.00091 32.9 6.5 33 3-35 433-466 (524)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.70 E-value=0.00015 Score=68.25 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=66.0
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 282 (317)
++++.+|++.+|...+..++..+....+......+ .++. +.+. .....++..+.+.+||++.|.++||++||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---- 325 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---- 325 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence 44678899999999999888888777777777777 6665 6653 45678888999999999999999999886
Q ss_pred chHHHHHHHHHHHHH
Q 021109 283 LCCDCTAWSLLWRHI 297 (317)
Q Consensus 283 R~~~~~~~~~~~~~l 297 (317)
|......++.+++.+
T Consensus 326 ~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 326 KVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.06 E-value=0.00053 Score=64.58 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=55.4
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhh--hcc
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHY--VSS 278 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~--~~~ 278 (317)
.++.++++.+|.+.+..++.......+......+.++ ++.+. .....++.++++.+|+++.|.++||+ +||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4678899999999988877766655555666666665 56553 35688889999999999999999998 765
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.84 E-value=0.0042 Score=58.76 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=50.1
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
..+|+++||.+...+++....-.++..-+....+ .++.+ +....+++..+...+|++.+|.++||+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr 73 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3678999999888665544333333334444344 45665 345788999999999999999999999998
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.92 E-value=0.019 Score=54.73 Aligned_cols=85 Identities=7% Similarity=0.008 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHHHHH------hCCCc--hhhHHHHHhhhhcccccccccchhh-hhccCCCcchH
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCC 285 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a------~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~ 285 (317)
+.+|.+++..++....-..+........++ ++.+. .....++..+.+.+|.+.+|.++|| ++|| |..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r----~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR----PAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH----HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch----HHH
Confidence 357777766655544433343444444443 56653 4578899999999999999999999 8997 666
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 021109 286 DCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~ 303 (317)
.++.++.+++.++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~ 106 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF 106 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666777766655543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=94.51 E-value=0.025 Score=52.89 Aligned_cols=83 Identities=10% Similarity=-0.094 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS 291 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~ 291 (317)
...++.+++..++....-.++..-...+.+++ .+ +.....++..+...++.+.+|.++||++|| |.+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~~~~ 101 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR----VFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch----HHHHHHHHH
Confidence 33444444444433322222233344455555 44 346788999999999999999999999987 555666666
Q ss_pred HHHHHHHHHh
Q 021109 292 LLWRHILFDG 301 (317)
Q Consensus 292 ~~~~~l~~~~ 301 (317)
.+++.++++.
T Consensus 102 ~~~~~~~~~~ 111 (451)
T 1pw4_A 102 AAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6777666554
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.30 E-value=0.042 Score=50.34 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=41.8
Q ss_pred cchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 236 ~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
.-...+.++++.+. .....++..+.+.++.+..|.++||++|| |.+..+..+.+++.+++
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR----PVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC----CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHHHHH
Confidence 33455666777654 35688899999999999999999999998 33444444444444433
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=94.13 E-value=0.065 Score=49.92 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~ 299 (317)
...+.++++.++ .....++..+...++.+.+|.++||++|| |.+.++.++.+++.+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r----~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK----AGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch----HHHHHHHHHHHHHHHHH
Confidence 344667777764 35688999999999999999999999998 66666666666666655
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=93.69 E-value=0.041 Score=52.99 Aligned_cols=85 Identities=9% Similarity=-0.071 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhhhhhheeecchhHH-HHHhC------CCc--hhhHHHHHhhhhcccccccccchhhh-hccCCCcch
Q 021109 215 ADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALG------VND--TTELLCLFSLCNFAGRLGSGVLSEHY-VSSQWYPLC 284 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~~------~~~--~~~~vsl~si~n~~GRl~~G~lsD~~-~~~~~~~R~ 284 (317)
+.+|.+++..++...+-.++...+... .+.++ .+. .....++..+...++.+.+|.++||+ +|| |.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----~~ 87 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----NT 87 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH----HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----HH
Confidence 456766665555444433333444443 34566 543 45788899999999999999999999 987 55
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021109 285 CDCTAWSLLWRHILFDGSN 303 (317)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~ 303 (317)
+.++.++.+++.+++....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5666666666666555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=93.03 E-value=0.13 Score=48.46 Aligned_cols=87 Identities=11% Similarity=-0.033 Sum_probs=50.5
Q ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhee-ecchhHHHHHh-CCC---c--hhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109 208 LGEAFVKADFWLLWFVYFLGVGAGVTV-LNNLAQIGVAL-GVN---D--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQW 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~-i~n~~~i~~a~-~~~---~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~ 280 (317)
.++.++++++|.+++..++.. .+... ........++. +.. . .....++..+++.+|++..|.++||++||
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-- 289 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-- 289 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--
Confidence 457788999998776544332 22211 12233333332 211 1 13456677788999999999999999986
Q ss_pred CcchHHHHHHHHHHHHHHH
Q 021109 281 YPLCCDCTAWSLLWRHILF 299 (317)
Q Consensus 281 ~~R~~~~~~~~~~~~~l~~ 299 (317)
|....+.++++++.+.+
T Consensus 290 --~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 290 --NALLLAGTIMSVRIIGS 306 (417)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 44444444444544433
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=88.59 E-value=0.4 Score=45.30 Aligned_cols=45 Identities=9% Similarity=-0.089 Sum_probs=35.4
Q ss_pred hHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109 252 ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD 300 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~ 300 (317)
..+|...++..+|-+++|.++||+||| +.+.++.+++.++.++.+
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk----~~l~~~~~l~~i~~i~~a 103 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRR----DSLKIAAVLFFISGVGSA 103 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHH
Confidence 467777888999999999999999998 666666666666655444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=85.61 E-value=0.14 Score=46.77 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=49.9
Q ss_pred CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhc
Q 021109 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVS 277 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~ 277 (317)
+.++.+|++.+|.+.+..++.......+......+.++ ++.+ +.....++.+++..+|++..|.++||.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 191 SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888777655544444444444443 4443 23456777888889999999999998876
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=68.34 E-value=4.7 Score=37.87 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=40.2
Q ss_pred ccCCCC-CchhHHHHHHhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeee
Q 021109 2 RNFPLS-RGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIR 61 (317)
Q Consensus 2 ~nFP~~-RG~vvgi~k~~~GLSaaifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir 61 (317)
+.+|.+ ||++.|+.-....+++++-..+...+.+.+....+..+++...+..++...+.+
T Consensus 413 ~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 413 KLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357754 999999999999999988888766555545555556666666555555444443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=61.20 E-value=10 Score=35.44 Aligned_cols=66 Identities=8% Similarity=0.001 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109 213 VKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS 278 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~ 278 (317)
+....+.......+....|...+.. ...+.+..+... ......+.++.+..+-++.+.+.||++||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr 342 (491)
T 4gc0_A 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342 (491)
T ss_dssp CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3334444333333444444433333 334445555543 23455677788889999999999999997
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=50.75 E-value=27 Score=32.90 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred cCC-CCCchhHHHHHHhhhhHHHHHHHHHHHHcC
Q 021109 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQ 35 (317)
Q Consensus 3 nFP-~~RG~vvgi~k~~~GLSaaifs~i~~~ff~ 35 (317)
.+| +.||++.|+.....++++.+-..+.....+
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467 569999999999999999998888766654
Done!