BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021110
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
GN=yhjX PE=1 SV=1
Length = 402
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 193 AVKEKRRPRRG---EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVL---NNLAQIGVALG 246
A K++ + G +D+ L E+ K +W+L ++ +G+ V+ ++AQ L
Sbjct: 189 APKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHLD 248
Query: 247 VNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGR 292
V + + S+ N +GRL G+LS+ R +R I +G+
Sbjct: 249 VVSAANAVTVISIANLSGRLVLGILSDKIAR-------IRVITIGQ 287
>sp|B9K2V4|DCTA_AGRVS C4-dicarboxylate transport protein OS=Agrobacterium vitis (strain
S4 / ATCC BAA-846) GN=dctA PE=3 SV=1
Length = 444
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 184 EILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG 242
++++AI G + P+ GE K LG+AF+K ++ V FL V G+ +++L ++G
Sbjct: 23 QVIVAIIGGILLGHFYPQTGEALKPLGDAFIKLVKMVIAPVIFLTVATGIAGMSDLKKVG 82
Query: 243 VALGVNDTTELLCLFSLCNFAGRLGSGVLS 272
G LC +L G L S +L
Sbjct: 83 RVAG-KAMIYFLCFSTLALVVGMLVSNILQ 111
>sp|Q986R8|DCTA2_RHILO C4-dicarboxylate transport protein 2 OS=Rhizobium loti (strain
MAFF303099) GN=dctA2 PE=3 SV=1
Length = 442
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+AI G + P GE K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 23 VQVLVAITVGILLGHYYPSIGESMKPLGDAFIKLVKMIIAPVIFLTVATGIAGMSDLQKV 82
Query: 242 G 242
G
Sbjct: 83 G 83
>sp|Q98AV2|DCTA1_RHILO C4-dicarboxylate transport protein 1 OS=Rhizobium loti (strain
MAFF303099) GN=dctA1 PE=3 SV=2
Length = 477
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+AI G P+ GE+ K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 23 VQVLVAILLGVAVGHFYPQIGENLKPLGDAFIKLVKMIIAPVIFLTVSTGIAGMSDLQKV 82
Query: 242 G 242
G
Sbjct: 83 G 83
>sp|Q2KYU4|DCTA_BORA1 C4-dicarboxylate transport protein OS=Bordetella avium (strain
197N) GN=dctA PE=3 SV=1
Length = 445
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+AI G + +P GE K LG+ F+K ++ V FL V G+ +++L ++
Sbjct: 23 VQVLVAIVIGVLLGYFKPDLGEAMKPLGDGFIKLVKMIIAPVIFLTVTTGIAAMSDLKKV 82
Query: 242 G 242
G
Sbjct: 83 G 83
>sp|A6X4N2|DCTA_OCHA4 C4-dicarboxylate transport protein OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=dctA PE=3 SV=1
Length = 444
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+AI G + P G K LG+AF+K ++ V FL V G+ + ++ ++
Sbjct: 24 VQVLVAIAAGILLGHFYPELGTQLKPLGDAFIKLVKMIIAPVIFLTVATGIAGMTDMKKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|Q01857|DCTA_RHILE C4-dicarboxylate transport protein OS=Rhizobium leguminosarum
GN=dctA PE=3 SV=1
Length = 444
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+AI G + P G K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 24 VQVLVAIAAGILLGHFYPELGTQLKPLGDAFIKLVKMIIAPVIFLTVATGIAGMSDLQKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|P20672|DCTA_RHIME C4-dicarboxylate transport protein OS=Rhizobium meliloti (strain
1021) GN=dctA PE=1 SV=1
Length = 441
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G + K LG+AF++ ++ V FL V G+ + +LA++
Sbjct: 21 VQVLAAIAAGILLGHFYPDIGTELKPLGDAFIRLVKMIIAPVIFLTVATGIAGMTDLAKV 80
Query: 242 G 242
G
Sbjct: 81 G 81
>sp|A6UH53|DCTA_SINMW C4-dicarboxylate transport protein OS=Sinorhizobium medicae (strain
WSM419) GN=dctA PE=3 SV=1
Length = 454
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF++ ++ V FL V G+ + +LA++
Sbjct: 33 VQVLAAIAAGILLGHFYPDIGTQLKPLGDAFIRLVKMIIAPVIFLTVATGIAGMTDLAKV 92
Query: 242 G 242
G
Sbjct: 93 G 93
>sp|B5ZXG4|DCTA_RHILW C4-dicarboxylate transport protein OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=dctA PE=3 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 24 VQVLAAIAAGILLGHFYPELGAQLKPLGDAFIKLVKMIIAPVIFLTVATGIAGMSDLKKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|Q8XR66|DCTA3_RALSO C4-dicarboxylate transport protein 3 OS=Ralstonia solanacearum
(strain GMI1000) GN=dctA3 PE=3 SV=1
Length = 447
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L+ + G V+ P G D K LG+ F+K + + F V G+ + N+ ++
Sbjct: 11 VQVLIGVAAGIVQGVAAPNLGSDLKPLGDVFIKLIKMVFAPIIFATVTLGIARMENMKEL 70
Query: 242 GVALGVNDTT--ELLCLFSLC 260
G +GV E+L F+L
Sbjct: 71 G-RVGVRALVYFEVLSTFALA 90
>sp|Q1MDR5|DCTA_RHIL3 C4-dicarboxylate transport protein OS=Rhizobium leguminosarum bv.
viciae (strain 3841) GN=dctA PE=3 SV=1
Length = 444
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 24 VQVLAAIAAGILLGHFYPEFGTQLKPLGDAFIKLVKMIIAPVIFLTVATGIAGMSDLQKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|Q2K5Z8|DCTA_RHIEC C4-dicarboxylate transport protein OS=Rhizobium etli (strain CFN 42
/ ATCC 51251) GN=dctA PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 24 VQVLAAIAAGILLGHFYPELGTQLKPLGDAFIKLVKMVIAPVIFLTVATGIAGMSDLKKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|B3PUW1|DCTA_RHIE6 C4-dicarboxylate transport protein OS=Rhizobium etli (strain CIAT
652) GN=dctA PE=3 SV=1
Length = 444
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF+K ++ V FL V G+ +++L ++
Sbjct: 24 VQVLAAIAAGILLGHFYPELGTQLKPLGDAFIKLVKMVIAPVIFLTVATGIAGMSDLKKV 83
Query: 242 G 242
G
Sbjct: 84 G 84
>sp|A8IDZ2|DCTA_AZOC5 C4-dicarboxylate transport protein OS=Azorhizobium caulinodans
(strain ATCC 43989 / DSM 5975 / ORS 571) GN=dctA PE=3
SV=1
Length = 446
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 183 VEILLAIGEGAVKEKRRPRRGEDFK-LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241
V++L AI G + P G K LG+AF+K ++ V FL V G+ + +LA++
Sbjct: 23 VQVLAAIAIGILLGHFYPDLGTQMKPLGDAFIKLVKMVIAPVIFLTVVTGIAGMRDLAKV 82
Query: 242 G 242
G
Sbjct: 83 G 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,331,758
Number of Sequences: 539616
Number of extensions: 4298221
Number of successful extensions: 13441
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 13436
Number of HSP's gapped (non-prelim): 32
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)