Query 021110
Match_columns 317
No_of_seqs 203 out of 794
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00207 hypothetical protein; 100.0 5.9E-40 1.3E-44 333.4 16.0 270 2-305 147-451 (591)
2 PF06813 Nodulin-like: Nodulin 100.0 2.6E-29 5.6E-34 231.1 11.2 127 1-127 122-250 (250)
3 TIGR00890 2A0111 Oxalate/Forma 98.2 1.9E-05 4.2E-10 73.9 11.6 76 207-282 197-274 (377)
4 KOG2504 Monocarboxylate transp 98.0 3.5E-05 7.7E-10 78.2 9.9 95 209-308 292-388 (509)
5 TIGR00893 2A0114 d-galactonate 97.6 0.00077 1.7E-08 63.1 12.1 73 207-279 207-282 (399)
6 PLN00028 nitrate transmembrane 97.4 0.00029 6.2E-09 70.5 6.9 74 207-280 244-320 (476)
7 PRK09556 uhpT sugar phosphate 97.3 0.001 2.2E-08 66.0 9.7 71 210-280 253-326 (467)
8 TIGR00881 2A0104 phosphoglycer 97.3 0.0026 5.7E-08 59.5 11.9 74 207-280 208-284 (379)
9 PRK11663 regulatory protein Uh 97.2 0.004 8.6E-08 61.2 12.2 67 211-277 239-308 (434)
10 TIGR00894 2A0114euk Na(+)-depe 97.2 0.0054 1.2E-07 60.5 12.5 75 207-281 253-330 (465)
11 PRK11273 glpT sn-glycerol-3-ph 97.2 0.0049 1.1E-07 60.9 12.1 69 210-278 248-319 (452)
12 TIGR00892 2A0113 monocarboxyla 97.1 0.0043 9.2E-08 61.6 10.7 67 209-275 235-303 (455)
13 TIGR00712 glpT glycerol-3-phos 96.9 0.01 2.3E-07 58.3 11.6 71 210-280 246-319 (438)
14 TIGR02332 HpaX 4-hydroxyphenyl 96.8 0.011 2.4E-07 57.8 10.7 70 211-280 238-311 (412)
15 TIGR00711 efflux_EmrB drug res 96.4 0.059 1.3E-06 52.9 13.3 72 209-280 249-323 (485)
16 TIGR00896 CynX cyanate transpo 96.4 0.0093 2E-07 56.5 7.2 72 208-279 190-263 (355)
17 TIGR00886 2A0108 nitrite extru 96.1 0.013 2.8E-07 55.3 6.5 75 207-281 217-294 (366)
18 COG2223 NarK Nitrate/nitrite t 95.9 0.021 4.6E-07 56.3 7.0 74 207-280 210-286 (417)
19 PF07690 MFS_1: Major Facilita 95.9 0.029 6.4E-07 52.0 7.7 73 208-280 199-275 (352)
20 COG2271 UhpC Sugar phosphate p 95.8 0.027 5.9E-07 55.7 7.4 73 210-283 247-323 (448)
21 PRK09705 cynX putative cyanate 95.7 0.022 4.7E-07 55.2 6.3 73 209-281 199-273 (393)
22 PRK09528 lacY galactoside perm 95.7 0.019 4.2E-07 55.9 5.8 74 210-283 5-81 (420)
23 KOG2533 Permease of the major 95.6 0.062 1.3E-06 54.6 9.4 94 206-300 264-361 (495)
24 TIGR00882 2A0105 oligosacchari 95.6 0.028 6E-07 54.2 6.6 70 214-283 1-73 (396)
25 TIGR00886 2A0108 nitrite extru 95.3 0.032 7E-07 52.5 5.8 68 216-283 2-72 (366)
26 TIGR00897 2A0118 polyol permea 95.2 0.056 1.2E-06 52.4 7.1 73 209-281 216-290 (402)
27 PRK10213 nepI ribonucleoside t 95.2 0.026 5.6E-07 54.9 4.7 68 216-283 18-90 (394)
28 PRK03633 putative MFS family t 94.7 0.075 1.6E-06 51.0 6.6 70 213-283 4-76 (381)
29 PRK14995 methyl viologen resis 94.6 1.1 2.5E-05 44.8 15.0 72 209-280 253-327 (495)
30 TIGR00887 2A0109 phosphate:H+ 94.4 0.49 1.1E-05 47.4 11.9 30 254-283 341-370 (502)
31 KOG0569 Permease of the major 94.4 0.74 1.6E-05 46.7 13.0 77 204-280 254-337 (485)
32 PRK15403 multidrug efflux syst 94.4 0.061 1.3E-06 52.6 5.1 54 230-283 31-86 (413)
33 PRK03545 putative arabinose tr 94.3 0.09 1.9E-06 50.5 6.1 72 208-279 198-272 (390)
34 TIGR00883 2A0106 metabolite-pr 94.1 0.17 3.8E-06 47.4 7.5 75 207-281 209-288 (394)
35 PRK10504 putative transporter; 94.1 0.12 2.7E-06 50.9 6.6 68 215-282 10-79 (471)
36 PRK11652 emrD multidrug resist 94.1 0.13 2.9E-06 49.3 6.7 67 217-283 10-78 (394)
37 TIGR00710 efflux_Bcr_CflA drug 93.8 0.17 3.7E-06 47.7 6.9 69 215-283 4-75 (385)
38 PRK10091 MFS transport protein 93.8 0.073 1.6E-06 51.2 4.3 69 215-283 3-73 (382)
39 PRK03699 putative transporter; 93.6 0.15 3.2E-06 49.2 6.2 68 215-282 205-275 (394)
40 PRK10091 MFS transport protein 93.6 0.18 3.9E-06 48.4 6.6 74 209-282 193-269 (382)
41 TIGR01299 synapt_SV2 synaptic 93.5 0.16 3.4E-06 54.2 6.5 72 212-283 160-237 (742)
42 PRK12382 putative transporter; 93.3 0.17 3.6E-06 48.6 6.0 74 210-283 10-86 (392)
43 PRK03699 putative transporter; 93.3 0.18 3.9E-06 48.7 6.2 69 215-283 7-77 (394)
44 PRK09556 uhpT sugar phosphate 93.3 0.19 4.1E-06 49.8 6.5 68 216-283 26-99 (467)
45 TIGR00885 fucP L-fucose:H+ sym 93.3 0.19 4E-06 49.4 6.3 74 208-281 225-302 (410)
46 PRK12307 putative sialic acid 93.2 0.21 4.5E-06 48.3 6.5 77 207-283 220-301 (426)
47 PRK09874 drug efflux system pr 93.2 0.24 5.3E-06 47.3 6.9 70 214-283 13-89 (408)
48 TIGR00900 2A0121 H+ Antiporter 93.1 0.13 2.7E-06 47.9 4.7 67 217-283 1-69 (365)
49 PRK15402 multidrug efflux syst 93.1 0.24 5.2E-06 47.8 6.6 69 215-283 9-83 (406)
50 TIGR01272 gluP glucose/galacto 93.0 0.28 6E-06 46.3 6.8 73 210-282 135-212 (310)
51 PRK15034 nitrate/nitrite trans 93.0 0.22 4.8E-06 50.2 6.3 74 208-282 245-320 (462)
52 TIGR00710 efflux_Bcr_CflA drug 92.9 0.24 5.2E-06 46.7 6.3 75 208-282 199-276 (385)
53 PRK03893 putative sialic acid 92.8 0.25 5.4E-06 48.9 6.4 68 216-283 21-90 (496)
54 PRK11195 lysophospholipid tran 92.7 0.22 4.8E-06 48.3 5.9 70 214-283 2-73 (393)
55 TIGR00890 2A0111 Oxalate/Forma 92.6 0.28 6.1E-06 45.6 6.2 47 237-283 25-73 (377)
56 PRK10133 L-fucose transporter; 92.6 0.23 5.1E-06 49.1 5.9 76 208-283 251-330 (438)
57 PRK11551 putative 3-hydroxyphe 92.5 0.34 7.3E-06 46.5 6.8 66 217-282 222-289 (406)
58 PRK10054 putative transporter; 92.4 0.27 5.8E-06 47.8 6.0 69 215-283 7-78 (395)
59 TIGR00902 2A0127 phenyl propri 92.4 0.38 8.2E-06 46.2 7.0 74 207-280 197-272 (382)
60 TIGR02332 HpaX 4-hydroxyphenyl 92.4 0.22 4.8E-06 48.6 5.4 43 241-283 34-78 (412)
61 PRK03633 putative MFS family t 92.4 0.41 8.8E-06 45.9 7.2 74 207-281 192-268 (381)
62 PF06609 TRI12: Fungal trichot 92.2 0.45 9.7E-06 49.5 7.6 68 213-280 38-110 (599)
63 PRK03545 putative arabinose tr 92.2 0.21 4.5E-06 48.0 4.9 46 238-283 32-79 (390)
64 TIGR00924 yjdL_sub1_fam amino 92.2 0.32 7E-06 48.7 6.4 68 216-283 11-84 (475)
65 KOG2532 Permease of the major 92.2 0.24 5.3E-06 49.9 5.5 97 204-300 247-350 (466)
66 TIGR00879 SP MFS transporter, 91.8 0.42 9.1E-06 45.9 6.5 47 237-283 306-354 (481)
67 TIGR00889 2A0110 nucleoside tr 91.8 0.22 4.8E-06 48.9 4.7 76 208-283 201-286 (418)
68 TIGR00897 2A0118 polyol permea 91.8 0.37 8E-06 46.7 6.1 69 214-283 13-83 (402)
69 PRK11663 regulatory protein Uh 91.6 0.44 9.5E-06 46.7 6.5 68 216-283 24-93 (434)
70 cd06174 MFS The Major Facilita 91.5 0.35 7.6E-06 44.4 5.4 66 218-283 2-69 (352)
71 PRK10406 alpha-ketoglutarate t 91.4 0.61 1.3E-05 45.7 7.2 75 207-281 234-312 (432)
72 PRK15034 nitrate/nitrite trans 91.4 0.74 1.6E-05 46.4 7.9 70 214-283 33-105 (462)
73 TIGR00899 2A0120 sugar efflux 91.3 0.66 1.4E-05 43.6 7.2 73 209-281 193-268 (375)
74 PRK10489 enterobactin exporter 91.3 0.25 5.4E-06 47.9 4.3 72 211-283 13-87 (417)
75 TIGR00891 2A0112 putative sial 91.1 0.53 1.1E-05 44.5 6.3 47 237-283 34-82 (405)
76 PRK10473 multidrug efflux syst 91.0 0.59 1.3E-05 44.7 6.7 74 209-282 197-273 (392)
77 TIGR00895 2A0115 benzoate tran 90.9 0.6 1.3E-05 43.8 6.5 64 215-278 250-315 (398)
78 TIGR00901 2A0125 AmpG-related 90.8 0.6 1.3E-05 44.0 6.4 76 208-283 199-280 (356)
79 cd06174 MFS The Major Facilita 90.7 0.62 1.3E-05 42.7 6.2 65 215-279 175-242 (352)
80 PRK11102 bicyclomycin/multidru 90.5 0.63 1.4E-05 44.0 6.2 76 208-283 187-265 (377)
81 PRK11128 putative 3-phenylprop 90.4 0.7 1.5E-05 44.3 6.5 74 207-280 197-272 (382)
82 PLN00028 nitrate transmembrane 90.4 0.57 1.2E-05 46.8 6.1 46 238-283 59-106 (476)
83 TIGR00900 2A0121 H+ Antiporter 90.3 0.78 1.7E-05 42.5 6.6 74 208-281 203-280 (365)
84 PRK15075 citrate-proton sympor 90.2 0.89 1.9E-05 44.5 7.2 69 212-280 234-306 (434)
85 TIGR00881 2A0104 phosphoglycer 90.0 0.48 1E-05 44.1 4.9 45 239-283 19-65 (379)
86 KOG4686 Predicted sugar transp 90.0 0.64 1.4E-05 44.5 5.6 88 214-305 263-353 (459)
87 PF07690 MFS_1: Major Facilita 89.9 0.46 9.9E-06 43.9 4.6 42 240-281 22-65 (352)
88 TIGR00903 2A0129 major facilit 89.8 0.95 2.1E-05 43.8 7.0 69 208-279 185-254 (368)
89 TIGR00898 2A0119 cation transp 89.7 0.65 1.4E-05 46.2 5.8 77 206-283 314-390 (505)
90 PRK15402 multidrug efflux syst 89.5 0.9 1.9E-05 43.8 6.5 76 208-283 208-286 (406)
91 PRK09584 tppB putative tripept 89.4 0.96 2.1E-05 45.7 6.8 74 210-283 15-93 (500)
92 PRK08633 2-acyl-glycerophospho 89.4 0.74 1.6E-05 50.6 6.5 74 210-283 4-82 (1146)
93 PRK11043 putative transporter; 89.3 1.1 2.3E-05 43.1 6.8 75 207-281 195-271 (401)
94 PRK05122 major facilitator sup 89.3 1.2 2.7E-05 42.6 7.2 40 242-281 243-282 (399)
95 PRK05122 major facilitator sup 89.2 0.88 1.9E-05 43.6 6.1 61 223-283 24-86 (399)
96 TIGR00711 efflux_EmrB drug res 89.0 0.5 1.1E-05 46.3 4.4 48 236-283 23-72 (485)
97 PRK12307 putative sialic acid 88.8 1 2.2E-05 43.4 6.4 47 237-283 40-88 (426)
98 PRK11043 putative transporter; 88.8 0.83 1.8E-05 43.9 5.7 51 233-283 24-76 (401)
99 PRK10473 multidrug efflux syst 88.4 0.94 2E-05 43.3 5.7 51 233-283 21-73 (392)
100 PRK11273 glpT sn-glycerol-3-ph 88.1 1.7 3.7E-05 42.8 7.6 38 246-283 59-98 (452)
101 TIGR02718 sider_RhtX_FptX side 88.1 1.1 2.4E-05 43.0 6.0 77 207-283 200-279 (390)
102 TIGR00892 2A0113 monocarboxyla 88.0 1.2 2.5E-05 44.2 6.3 46 238-283 42-89 (455)
103 COG2814 AraJ Arabinose efflux 88.0 1.9 4E-05 42.7 7.5 73 207-280 203-278 (394)
104 TIGR00895 2A0115 benzoate tran 87.4 1.3 2.9E-05 41.5 6.1 47 237-283 39-87 (398)
105 PRK11646 multidrug resistance 87.4 1.3 2.7E-05 43.1 6.0 43 241-283 37-81 (400)
106 PRK10133 L-fucose transporter; 87.2 1.3 2.8E-05 43.9 6.0 68 216-283 27-96 (438)
107 PRK14995 methyl viologen resis 87.2 0.93 2E-05 45.4 5.1 47 237-283 28-76 (495)
108 TIGR00712 glpT glycerol-3-phos 86.7 1.1 2.3E-05 44.0 5.1 43 241-283 52-96 (438)
109 PRK09528 lacY galactoside perm 86.2 0.8 1.7E-05 44.5 3.9 74 208-281 216-295 (420)
110 PRK10213 nepI ribonucleoside t 86.1 2.2 4.8E-05 41.3 7.0 70 207-276 208-280 (394)
111 PRK09705 cynX putative cyanate 86.1 2.4 5.1E-05 41.0 7.1 66 218-283 9-79 (393)
112 COG2814 AraJ Arabinose efflux 85.8 2.1 4.6E-05 42.3 6.6 80 216-300 14-95 (394)
113 TIGR00893 2A0114 d-galactonate 85.8 0.67 1.5E-05 43.1 3.0 46 238-283 17-64 (399)
114 PRK11102 bicyclomycin/multidru 85.7 1.2 2.7E-05 42.0 4.9 51 233-283 9-61 (377)
115 TIGR00899 2A0120 sugar efflux 85.1 1.5 3.2E-05 41.2 5.1 41 241-281 24-66 (375)
116 PRK15462 dipeptide/tripeptide 85.0 1.8 3.8E-05 44.1 5.8 40 243-282 38-80 (493)
117 PF13347 MFS_2: MFS/sugar tran 84.8 2.5 5.5E-05 41.2 6.7 77 207-283 217-295 (428)
118 PRK10504 putative transporter; 83.8 2.2 4.8E-05 41.9 5.8 74 209-283 255-332 (471)
119 PRK10642 proline/glycine betai 83.7 3.6 7.9E-05 41.1 7.4 45 238-282 273-320 (490)
120 PRK10207 dipeptide/tripeptide 83.6 2.6 5.5E-05 42.6 6.3 42 242-283 42-86 (489)
121 PRK10077 xylE D-xylose transpo 83.6 2.8 6E-05 41.1 6.4 33 251-283 58-90 (479)
122 COG2271 UhpC Sugar phosphate p 83.3 1.1 2.4E-05 44.6 3.4 62 241-309 55-118 (448)
123 PRK03893 putative sialic acid 83.3 2.4 5.2E-05 41.9 5.9 47 236-282 296-345 (496)
124 TIGR00805 oat sodium-independe 83.3 2.5 5.4E-05 44.2 6.2 72 207-278 322-397 (633)
125 TIGR00882 2A0105 oligosacchari 82.9 2.5 5.3E-05 40.6 5.7 73 207-280 207-286 (396)
126 PRK11551 putative 3-hydroxyphe 82.8 3.3 7.1E-05 39.6 6.5 45 239-283 39-85 (406)
127 PTZ00207 hypothetical protein; 82.8 2.5 5.4E-05 44.0 5.9 65 216-281 26-94 (591)
128 TIGR00792 gph sugar (Glycoside 82.7 1.7 3.6E-05 42.1 4.4 74 207-281 214-290 (437)
129 TIGR00879 SP MFS transporter, 82.6 2.6 5.6E-05 40.4 5.7 33 251-283 74-106 (481)
130 PRK11902 ampG muropeptide tran 80.8 4 8.7E-05 39.3 6.3 75 207-281 201-279 (402)
131 PRK12382 putative transporter; 80.8 5 0.00011 38.3 6.9 42 241-282 242-283 (392)
132 PRK09848 glucuronide transport 80.6 2.1 4.5E-05 42.0 4.3 53 245-297 39-94 (448)
133 PRK15011 sugar efflux transpor 80.5 3.6 7.9E-05 39.6 5.9 46 237-282 238-286 (393)
134 PRK09952 shikimate transporter 80.3 4.3 9.3E-05 39.9 6.4 72 211-282 245-320 (438)
135 PRK06814 acylglycerophosphoeth 79.3 17 0.00037 40.3 11.3 77 207-283 217-296 (1140)
136 PRK08633 2-acyl-glycerophospho 78.7 3.8 8.2E-05 45.1 6.0 74 208-281 225-302 (1146)
137 TIGR00891 2A0112 putative sial 78.4 5.5 0.00012 37.5 6.3 41 243-283 267-309 (405)
138 TIGR00885 fucP L-fucose:H+ sym 77.3 5.5 0.00012 39.0 6.1 67 216-283 4-73 (410)
139 TIGR01301 GPH_sucrose GPH fami 77.2 5 0.00011 40.6 5.9 50 234-283 23-78 (477)
140 PRK09874 drug efflux system pr 77.1 5.6 0.00012 37.9 6.0 30 253-282 263-292 (408)
141 KOG0252 Inorganic phosphate tr 76.0 1.6 3.5E-05 44.1 1.9 29 255-283 91-119 (538)
142 PRK06814 acylglycerophosphoeth 75.9 5.8 0.00013 43.9 6.5 74 209-282 5-86 (1140)
143 PRK10077 xylE D-xylose transpo 75.9 4.3 9.3E-05 39.8 4.9 46 238-283 294-341 (479)
144 TIGR00903 2A0129 major facilit 75.2 4.6 9.9E-05 39.0 4.8 43 238-280 14-58 (368)
145 PRK11010 ampG muropeptide tran 75.0 6.7 0.00015 39.4 6.2 72 208-280 215-291 (491)
146 KOG0255 Synaptic vesicle trans 73.9 2.5 5.5E-05 42.4 2.8 33 251-283 121-153 (521)
147 PRK10489 enterobactin exporter 73.9 8.2 0.00018 37.2 6.3 69 209-278 218-289 (417)
148 KOG0254 Predicted transporter 73.9 3.5 7.6E-05 41.5 3.8 33 251-283 92-124 (513)
149 TIGR00898 2A0119 cation transp 73.8 2.1 4.5E-05 42.5 2.1 33 251-283 130-162 (505)
150 PRK11652 emrD multidrug resist 73.7 11 0.00024 35.9 7.1 70 208-280 200-271 (394)
151 KOG0253 Synaptic vesicle trans 73.1 9.1 0.0002 38.1 6.2 30 254-283 387-416 (528)
152 KOG2563 Permease of the major 72.0 4.4 9.5E-05 40.8 3.8 76 207-282 258-335 (480)
153 TIGR00792 gph sugar (Glycoside 71.8 4.5 9.8E-05 39.0 3.9 40 244-283 29-70 (437)
154 PRK11128 putative 3-phenylprop 71.7 12 0.00027 35.7 6.9 47 238-284 27-75 (382)
155 TIGR00896 CynX cyanate transpo 71.5 6 0.00013 37.2 4.6 46 238-283 23-70 (355)
156 KOG0569 Permease of the major 70.0 3 6.5E-05 42.4 2.3 29 252-280 64-92 (485)
157 PRK09952 shikimate transporter 69.2 17 0.00037 35.7 7.4 25 259-283 75-99 (438)
158 TIGR00889 2A0110 nucleoside tr 68.8 8.7 0.00019 37.6 5.2 39 242-280 30-70 (418)
159 PF11700 ATG22: Vacuole efflux 68.4 13 0.00029 37.5 6.5 71 207-278 273-347 (477)
160 TIGR00902 2A0127 phenyl propri 68.2 11 0.00024 36.1 5.7 46 238-283 27-74 (382)
161 PRK10642 proline/glycine betai 68.1 11 0.00025 37.5 6.0 29 255-283 64-92 (490)
162 PF01306 LacY_symp: LacY proto 67.8 10 0.00022 37.7 5.5 70 212-283 4-78 (412)
163 TIGR00887 2A0109 phosphate:H+ 67.2 6.6 0.00014 39.3 4.1 33 251-283 59-91 (502)
164 PRK09669 putative symporter Ya 67.0 7.9 0.00017 37.9 4.5 76 207-283 221-299 (444)
165 PF12832 MFS_1_like: MFS_1 lik 66.2 10 0.00023 28.3 4.0 60 221-283 9-70 (77)
166 TIGR00805 oat sodium-independe 65.8 2.9 6.4E-05 43.7 1.3 62 238-299 56-121 (633)
167 PRK15011 sugar efflux transpor 65.8 17 0.00036 35.0 6.4 41 241-282 42-85 (393)
168 PF00083 Sugar_tr: Sugar (and 62.1 2.1 4.5E-05 41.7 -0.6 30 252-281 50-79 (451)
169 PF03825 Nuc_H_symport: Nucleo 60.9 26 0.00056 34.5 6.9 66 215-283 5-72 (400)
170 KOG0254 Predicted transporter 59.8 28 0.00061 35.0 7.1 71 212-283 292-364 (513)
171 PRK11010 ampG muropeptide tran 58.8 23 0.00049 35.6 6.2 53 227-280 23-82 (491)
172 TIGR00880 2_A_01_02 Multidrug 58.3 5.5 0.00012 30.9 1.3 29 255-283 5-33 (141)
173 COG3104 PTR2 Dipeptide/tripept 58.0 16 0.00034 37.3 4.7 84 209-300 23-109 (498)
174 TIGR00880 2_A_01_02 Multidrug 57.6 25 0.00055 27.0 5.1 33 3-35 79-112 (141)
175 PRK11462 putative transporter; 57.5 25 0.00055 34.9 6.2 74 208-281 221-296 (460)
176 PRK10429 melibiose:sodium symp 56.9 13 0.00029 36.9 4.1 73 209-282 225-300 (473)
177 PRK10054 putative transporter; 56.0 22 0.00047 34.4 5.3 73 208-280 199-276 (395)
178 COG0738 FucP Fucose permease [ 55.7 76 0.0017 31.7 8.9 72 207-278 228-302 (422)
179 PF05977 MFS_3: Transmembrane 55.5 23 0.0005 36.3 5.6 67 208-283 3-80 (524)
180 PRK15075 citrate-proton sympor 54.2 23 0.00049 34.6 5.2 46 238-283 38-91 (434)
181 KOG2615 Permease of the major 53.4 5.7 0.00012 39.4 0.8 29 252-280 72-100 (451)
182 PRK10406 alpha-ketoglutarate t 51.3 15 0.00033 35.8 3.4 25 259-283 74-98 (432)
183 TIGR01299 synapt_SV2 synaptic 50.8 17 0.00036 39.0 3.8 30 254-283 601-630 (742)
184 PRK11902 ampG muropeptide tran 49.8 31 0.00068 33.1 5.3 53 227-281 10-70 (402)
185 KOG2504 Monocarboxylate transp 49.7 37 0.0008 34.7 6.0 69 215-283 132-201 (509)
186 KOG3764 Vesicular amine transp 49.1 22 0.00047 35.6 4.0 60 2-63 186-250 (464)
187 PRK09848 glucuronide transport 48.8 20 0.00044 35.0 3.9 75 208-282 221-298 (448)
188 PF06813 Nodulin-like: Nodulin 43.4 88 0.0019 28.9 6.9 77 224-306 9-89 (250)
189 TIGR00883 2A0106 metabolite-pr 42.9 32 0.0007 31.9 4.1 23 261-283 48-70 (394)
190 PRK09669 putative symporter Ya 42.1 32 0.00069 33.6 4.1 42 245-286 40-84 (444)
191 PRK15403 multidrug efflux syst 38.5 88 0.0019 30.3 6.6 42 208-249 211-253 (413)
192 TIGR00901 2A0125 AmpG-related 36.4 61 0.0013 30.2 4.9 42 238-280 11-58 (356)
193 KOG2325 Predicted transporter/ 35.7 19 0.0004 36.7 1.3 98 204-301 374-474 (488)
194 PRK11195 lysophospholipid tran 34.1 99 0.0022 29.7 6.1 70 210-279 200-272 (393)
195 PF05631 DUF791: Protein of un 33.5 1.2E+02 0.0025 29.8 6.3 61 216-280 38-101 (354)
196 COG2223 NarK Nitrate/nitrite t 32.6 96 0.0021 31.0 5.6 39 243-281 42-82 (417)
197 TIGR00806 rfc RFC reduced fola 31.8 1.4E+02 0.0031 30.7 6.8 66 218-283 25-97 (511)
198 PRK11646 multidrug resistance 31.5 1.2E+02 0.0025 29.3 6.1 19 207-225 200-218 (400)
199 PRK10429 melibiose:sodium symp 30.0 61 0.0013 32.1 3.9 25 252-276 46-70 (473)
200 PF06609 TRI12: Fungal trichot 29.0 7E+02 0.015 26.2 13.8 29 253-282 354-382 (599)
201 COG2270 Permeases of the major 28.9 1E+02 0.0023 30.9 5.2 41 240-280 277-320 (438)
202 PF03825 Nuc_H_symport: Nucleo 26.7 1.6E+02 0.0034 29.0 6.1 74 207-283 199-274 (400)
203 TIGR00894 2A0114euk Na(+)-depe 26.3 1.4E+02 0.0031 29.1 5.8 33 3-35 389-421 (465)
204 COG4858 Uncharacterized membra 26.0 3E+02 0.0066 24.6 6.9 71 31-102 115-186 (226)
205 PF13347 MFS_2: MFS/sugar tran 24.5 39 0.00086 32.8 1.4 30 251-280 40-73 (428)
206 PRK11462 putative transporter; 23.7 75 0.0016 31.5 3.3 49 252-301 49-98 (460)
207 COG2211 MelB Na+/melibiose sym 23.5 95 0.0021 31.5 3.9 49 252-300 52-101 (467)
208 PF09490 CbtA: Probable cobalt 21.6 6.2E+02 0.013 23.0 8.8 57 9-68 73-133 (227)
209 PF03137 OATP: Organic Anion T 21.1 32 0.00069 35.4 0.0 61 237-300 25-85 (539)
210 TIGR00788 fbt folate/biopterin 20.7 2.3E+02 0.0049 28.2 6.0 62 213-276 24-88 (468)
211 TIGR00788 fbt folate/biopterin 20.4 1.8E+02 0.0039 28.9 5.2 59 6-65 383-447 (468)
No 1
>PTZ00207 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=333.43 Aligned_cols=270 Identities=20% Similarity=0.270 Sum_probs=207.3
Q ss_pred ccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeEeeccCCCCC------CCCCCCc
Q 021110 2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG------EDSSEHG 75 (317)
Q Consensus 2 ~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~------~~~~~~~ 75 (317)
+|||++||+++|+.|++.|+|++|+++++.+++.++.+.+++++++++.++++++++++|.+|++.. .+++|+.
T Consensus 147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999987642 1234444
Q ss_pred -----------------chhhHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHH-HHhhcc-cccceecccccccc
Q 021110 76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK 136 (317)
Q Consensus 76 -----------------~f~~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~i~~i-~ll~~p-~~i~~~~~~~~~~~ 136 (317)
+|..++.+++++++||++++++++|++++++.+..++++++ ++++.| +++|++. .++..
T Consensus 227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~ 304 (591)
T PTZ00207 227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKR 304 (591)
T ss_pred HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCC
Confidence 88899999999999999999999999999999999999988 666677 6666644 33211
Q ss_pred cccccCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCCchhHHHHHhccCcccccCCCCCCCCCCHHhhhhhhh
Q 021110 137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD 216 (317)
Q Consensus 137 ~~~~~~~~~~~~~~~~d~~~~~~~ll~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~~~d~t~~~~l~t~~ 216 (317)
.+ ++ +|. +..+. . + .+.+. . +++.+. .+.+.++ ++|++|+ |++|++++.|
T Consensus 305 ~~----~~-------~~~-~~~~~--~-~--~~~~~-~---~~~~~~------~~~~~~~-~~P~~~~--t~~q~l~~~d 354 (591)
T PTZ00207 305 PH----DD-------SDG-KAKEH--V-E--AGEEV-S---AAEDKV------VETDVDY-IAPQFQE--TFIEGLKTAR 354 (591)
T ss_pred cC----CC-------ccc-ccccc--c-c--ccccc-c---cccccc------ccccccC-CCCCCcc--hHHHHHhchh
Confidence 10 00 000 00000 0 0 00000 0 000000 0011222 2388887 9999999999
Q ss_pred HHHHHHHHHHhhcchhheecchHHHHHHh-CC-Cch--hH-HHHHHHhhhcccccccchhhhhhhhhhh----HHH-HHH
Q 021110 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVRSLL----LCS-YLR 286 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~-~~~--~~-~vsl~si~n~~GRl~~G~~SD~l~r~~~----~~r-~~~ 286 (317)
||++|+.++|+.|+|++++||++||++|+ |+ ++. +. +|+++|+||++||+++|++| .+.||++ +|| ..+
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l 433 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIAL 433 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHH
Confidence 99999999999999999999999999999 77 333 33 89999999999999999997 7777766 899 555
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 021110 287 SIKLGRKCKCFLVLFEKFQ 305 (317)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~ 305 (317)
.++.. |+++|++++-...
T Consensus 434 ~~~~~-~~~~~lll~~~~p 451 (591)
T PTZ00207 434 FIPSV-CIITMLTLFLTLP 451 (591)
T ss_pred HHHHH-HHHHHHHHHHHCC
Confidence 66666 9999999965544
No 2
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.96 E-value=2.6e-29 Score=231.07 Aligned_cols=127 Identities=44% Similarity=0.791 Sum_probs=120.6
Q ss_pred CccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeEeeccCCC--CCCCCCCCcchh
Q 021110 1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA--SGEDSSEHGHFV 78 (317)
Q Consensus 1 v~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~--~~~~~~~~~~f~ 78 (317)
+||||+|||+|+|++|+|+||||+||+++|++||++|+++|++|+|+.|.++++++++++|++|++ .+++++|+++|.
T Consensus 122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~ 201 (250)
T PF06813_consen 122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL 201 (250)
T ss_pred HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999974 345567888999
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccChhhHHHHHHHHHHHhhcccccce
Q 021110 79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV 127 (317)
Q Consensus 79 ~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~i~~i~ll~~p~~i~~ 127 (317)
..+.+++++++|+++++++++++++++..+...+++++++|++|++||+
T Consensus 202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV 250 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999999985
No 3
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.16 E-value=1.9e-05 Score=73.94 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=59.3
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+.++.++++++|.++..+++.......+.+...++.++++.++ .....++.++.+.+||+..|+++||++||+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 274 (377)
T TIGR00890 197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS 274 (377)
T ss_pred hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3467788889999988887776666666666666777777654 346788899999999999999999999886543
No 4
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.97 E-value=3.5e-05 Score=78.18 Aligned_cols=95 Identities=22% Similarity=0.204 Sum_probs=70.7
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLR 286 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~ 286 (317)
++.++++.||.+.+...+....-..-.--+...+++.+++ +++.+++++++.|.+||++.|++.|+-..++. ++.
T Consensus 292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~ 368 (509)
T KOG2504|consen 292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLF 368 (509)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHH
Confidence 6889999999998877777666666666777788888886 46789999999999999999999998773221 455
Q ss_pred HHHHHHHHHHHHHHHHhhccce
Q 021110 287 SIKLGRKCKCFLVLFEKFQTTV 308 (317)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~ 308 (317)
.+++...+++.+.+ .+.++.
T Consensus 369 ~~~ll~~gl~~~~~--p~~~~~ 388 (509)
T KOG2504|consen 369 LLTLLIAGLARLFL--PFATTY 388 (509)
T ss_pred HHHHHHHHHHHHHH--HHhccH
Confidence 55555555555444 555543
No 5
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.61 E-value=0.00077 Score=63.10 Aligned_cols=73 Identities=21% Similarity=0.155 Sum_probs=58.5
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
+.++.++++++|.+++..++.......+........++ ++.+. .....++..+++.+|++..|+++||++||+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788999999999998888777777666666666654 56543 346778888999999999999999999986
No 6
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.43 E-value=0.00029 Score=70.47 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=57.7
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.+++.++++.+|++++.+++..+....+.+.+..+.+ ..|.+ ++..+.++..+++.+||+++|+++||++||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 3577889999999999887777766665555555544 45765 34567889999999999999999999998754
No 7
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.35 E-value=0.001 Score=66.02 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=52.1
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.++++.+|.+++..+|..+.-..+..-.....+ .+|.+. +....++..+++.+|++..|+++||++||+.
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~ 326 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA 326 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 4789999999999887765554333333443443 456653 4467778889999999999999999998764
No 8
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.34 E-value=0.0026 Score=59.51 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
..++.++++.+|.+.+..++.......+........ +.++.+. .....++..+.+.+|+++.|+++||..+++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 284 (379)
T TIGR00881 208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR 284 (379)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence 456788999999988877665554333333344444 3456653 3457778899999999999999998755443
No 9
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.22 E-value=0.004 Score=61.22 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=44.1
Q ss_pred hhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021110 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR 277 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r 277 (317)
.++++.+|.+.+.+++....-..+..-...+. +..|.+. +....+++.+++.+||++.|+++||+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~ 308 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN 308 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence 56788999987765543332211122233333 3456653 3567888999999999999999999943
No 10
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.16 E-value=0.0054 Score=60.54 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=56.5
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.+++.++++.+|.+++..++.......+..-+..+.+ .+|.+. .....++..+++.+|+++.|+++|++.+|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~ 330 (465)
T TIGR00894 253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL 330 (465)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999887766655555555555544 456653 34567788899999999999999999876543
No 11
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.15 E-value=0.0049 Score=60.89 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=48.5
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~ 278 (317)
..++++.+|.+++.+++....-.....-.....++ .+.+ .+.....+.++++.+|++++|+++||++++
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~ 319 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 319 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 36788999998888776654333334445555554 4554 334566788899999999999999999643
No 12
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.07 E-value=0.0043 Score=61.65 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=49.3
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhh
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY 275 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l 275 (317)
.+.++++.||.+.+..++...+-.........+.++++++. .....++.++++.++|++.|+++|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36788999998877665544433344445566667777763 45788889999999999999999974
No 13
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.89 E-value=0.01 Score=58.25 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=49.7
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.++++.+|.+.+..++..+.-.........+.++ .|.+. +.+..++.++.+.+|+++.|+++||++++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 319 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR 319 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 46788999999876666543323334455555555 35543 3466778899999999999999999976543
No 14
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.77 E-value=0.011 Score=57.80 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=52.6
Q ss_pred hhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhC--CCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~--~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.++++.+|...++++|..+.-..+...+..+.++++ .+. +..+.++..+++.+||+..|+++||++||+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 238 EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 355688999988888766654445667777777753 332 3456788899999999999999999987653
No 15
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.42 E-value=0.059 Score=52.93 Aligned_cols=72 Identities=13% Similarity=-0.064 Sum_probs=48.4
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.+.+++++||...+..++................+. +|++. .........++..+|+++.|++.||++||+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 323 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL 323 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence 467788888887665554433322233334445554 46553 3456677888999999999999999998754
No 16
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.40 E-value=0.0093 Score=56.49 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
.++.+|++.+|.+.+.+++..+.-..+......+.++.|.+. .....++..++..+||+..|+++||+++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~ 263 (355)
T TIGR00896 190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR 263 (355)
T ss_pred CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence 456788899998777666554444444555666777777653 356888899999999999999999995443
No 17
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.12 E-value=0.013 Score=55.26 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=57.4
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
..++.++++++|.+.+.+++..+....+.+......++ ++.++ ...+.++..+.+.+||++.|+++||++||+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 294 (366)
T TIGR00886 217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL 294 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH
Confidence 45678899999999988888777665555556666654 46553 34577788899999999999999999997654
No 18
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.021 Score=56.28 Aligned_cols=74 Identities=27% Similarity=0.334 Sum_probs=61.5
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
..+...+++|-|.+-+.|+...|+=+-..+-+++..++. +.++ +.....+...-+.+-|...|++|||++.+|.
T Consensus 210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv 286 (417)
T COG2223 210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV 286 (417)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence 355677799999999999999998877888888888775 5543 3478999999999999999999999987654
No 19
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=95.88 E-value=0.029 Score=51.99 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHhCCC-ch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN-DT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~-~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+++..+++.+|.+++.+++....-.........+ .+.++.+ .. ....++..+.+.++++..|.++||+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR 275 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4567777778855555444432222233333333 3455665 22 345778888888999999999999987654
No 20
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.027 Score=55.74 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=47.2
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHH--HHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-.++++-.|++-+..++.--.=. -|+.=+++. |..+++ ++...++++=++...|-++.|++|||+-+.+..+-
T Consensus 247 YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 247 YVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 35777888888775544211110 123334443 334554 45678999999999999999999999965444333
No 21
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.72 E-value=0.022 Score=55.22 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=53.1
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.+.++++++|.+.+.+++....-....+-...+.++.|.+. .....++.++++.+||+..|.++||++||+..
T Consensus 199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~ 273 (393)
T PRK09705 199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL 273 (393)
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 45667888998877665554333334445666666666653 35688899999999999999999999987553
No 22
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.69 E-value=0.019 Score=55.86 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=53.6
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+..++++||.+++.+++...+--.+..-.....+ ++|.+. ..+..++..+...++++.+|.++||++||+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~ 81 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW 81 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 5677889999988777766532233333333333 367664 4578999999999999999999999999887544
No 23
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.062 Score=54.56 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=66.7
Q ss_pred CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
..++|+++++..|.+.+..+|....--..-+-+..+-++ .++++ +..+...+.+++.+|=++.|++|||+..- .-.
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-~~~ 342 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-FAR 342 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-HHH
Confidence 367999999999999999999877766555666666666 33543 34567788899999999999999998611 122
Q ss_pred H-HHHHHHHHHHHHHHHHH
Q 021110 283 S-YLRSIKLGRKCKCFLVL 300 (317)
Q Consensus 283 r-~~~~~~~~~~~~~~~~~ 300 (317)
| .+...+.+.+.+++..+
T Consensus 343 ~~~~~~~~~~~~~~g~~~l 361 (495)
T KOG2533|consen 343 RLLFIVFLCLYAIIGAISL 361 (495)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2 34444555666676555
No 24
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.61 E-value=0.028 Score=54.20 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHhhcc-hhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGA-GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~-Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+++||.+....++..++ +.....-...+.+.+|.+. ..+.+++.++...++++.+|+++||++||+.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~ 73 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW 73 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 47899987655554443 4443322223344567764 4568999999999999999999999999988655
No 25
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=95.33 E-value=0.032 Score=52.50 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.||..++.+++......++..-..+ +.++++.++ ..+..++..+...++.+.+|.++||++||+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL 72 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 5888888888776666665555554 778888874 3567889999999999999999999999876444
No 26
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.17 E-value=0.056 Score=52.41 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=51.4
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++.++++.+|.+.+..++....-.....-...+.+.+|.+.. ....++..+++.+|++..|+++||++||+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~ 290 (402)
T TIGR00897 216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV 290 (402)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 467888999988877666544333333334445566676533 3566778899999999999999999987653
No 27
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.16 E-value=0.026 Score=54.85 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhcc---hhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGA---GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~---Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++|.++...++.... ..+....+.++.+++|.+. ....+++..++..++++..|.++||++||+.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~ 90 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVIL 90 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 344445554443333 3334456777888888864 3568889999999999999999999999976544
No 28
>PRK03633 putative MFS family transporter protein; Provisional
Probab=94.74 E-value=0.075 Score=50.98 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 213 VKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+.++|.++...++.. .+.. +..-+..+.++++.++ ..+..+...+++.++.+.+|.++||++||+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~ 76 (381)
T PRK03633 4 YTRPVLLLLCGLLLLT-LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYL 76 (381)
T ss_pred HHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3567888887665533 3333 3345666777777763 3568889999999999999999999999987555
No 29
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=94.61 E-value=1.1 Score=44.77 Aligned_cols=72 Identities=11% Similarity=-0.084 Sum_probs=44.2
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.+.+|++.|+...+..++...+-...........|. .|++. +.......+++..+|.++.|.+.||+++|+.
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 327 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV 327 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 456677777766655544332211112222333333 46553 3456667888899999999999999998653
No 30
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=94.45 E-value=0.49 Score=47.44 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=22.9
Q ss_pred HHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 254 LCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+..+++..|.++.|+++||++||+.+..
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~ 370 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence 344455677799999999999999876444
No 31
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.74 Score=46.70 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=56.1
Q ss_pred CCCCHHhhhhhh----hHHHHHHHHHHhhcchhheec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021110 204 EDFKLGEAFVKA----DFWLLWFVYFLGVGAGVTVLN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 204 ~d~t~~~~l~t~----~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~ 276 (317)
++.+++|.++++ ..++.....++..-+|...|+ ....|-++.|.+. +.......++.|....+.+.++-||+|
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355888888863 355666677777778877554 3445667777763 345666788889999999999999999
Q ss_pred hhhh
Q 021110 277 RSLL 280 (317)
Q Consensus 277 r~~~ 280 (317)
||.-
T Consensus 334 RRpL 337 (485)
T KOG0569|consen 334 RRPL 337 (485)
T ss_pred CcHH
Confidence 8853
No 32
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.35 E-value=0.061 Score=52.63 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=43.5
Q ss_pred chhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 230 AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 230 ~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.-++.-.+.+|.++++.+. ....++++.++.++|.+.+|.++||++||+.+..
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~ 86 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIT 86 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHH
Confidence 44556667778888988763 4568899999999999999999999999976443
No 33
>PRK03545 putative arabinose transporter; Provisional
Probab=94.32 E-value=0.09 Score=50.55 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
.++.+|++.+|.+++..++.........+....+.++ .|.+. .....++.++.+.+|++..|.++||.+||.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 272 (390)
T PRK03545 198 LPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF 272 (390)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence 4678899999887776655444443333334444454 45543 356778899999999999999999998764
No 34
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=94.11 E-value=0.17 Score=47.37 Aligned_cols=75 Identities=21% Similarity=0.136 Sum_probs=49.4
Q ss_pred CHHhhhhhhh--HHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~--Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.++.++++. +|......++..............+. +.++.++ .....++..+.+.++++..|+++||++||+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3456666655 77666665554443333334455555 3455543 34567778899999999999999999988653
No 35
>PRK10504 putative transporter; Provisional
Probab=94.07 E-value=0.12 Score=50.87 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+.+|++++.+++......++......+.+++|.+.. ...++...+...++.+.+|.++|+++||+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 79 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF 79 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 468998888877666555666678888889888743 35667778888999999999999999987644
No 36
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=94.07 E-value=0.13 Score=49.30 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.|++.....++.....++......+.++++.++ .....++..++..++.+.+|.++||++||+.+..
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~ 78 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV 78 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 344444555555554556666788888888864 3567888999999999999999999999886544
No 37
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=93.84 E-value=0.17 Score=47.74 Aligned_cols=69 Identities=28% Similarity=0.245 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhhcchh-heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGV-TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl-~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.....+.+..+.+. ++......+.+++|.++ .....++..+++.++.+..|.++||++||+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 75 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL 75 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 344444444444444443 34455677788888864 3567888999999999999999999999876444
No 38
>PRK10091 MFS transport protein AraJ; Provisional
Probab=93.79 E-value=0.073 Score=51.15 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+|.+.+..++..-...++..-+..+.+++|.+. ....++...++..+|.+..|.++||++||+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 73 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF 73 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 45677766655555555566667777888888764 4578999999999999999999999999876544
No 39
>PRK03699 putative transporter; Provisional
Probab=93.65 E-value=0.15 Score=49.21 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+.+|++.+.+++.......+.+-...+.+ .+|.+. .....++..+++.+||+..|.++||+++|+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~ 275 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT 275 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence 46787777776655443334444555664 456653 456788899999999999999999999886543
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=93.57 E-value=0.18 Score=48.43 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=49.6
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.+.++++.+|.++...+++...-....+......+ ..|.+. ...+.++.++++.+||++.|+++||+++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~ 269 (382)
T PRK10091 193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA 269 (382)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH
Confidence 34677888898877666543322222222333333 356653 356788999999999999999999999876543
No 41
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=93.50 E-value=0.16 Score=54.18 Aligned_cols=72 Identities=26% Similarity=0.201 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHhhcc-h--hheecc-hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 212 FVKADFWLLWFVYFLGVGA-G--VTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 212 l~t~~Fw~l~~~~~~~~g~-G--l~~i~n-~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-.++..|.+++.+.++... | ...++. +..+.++++.+. ..++.++..++..+|.+++|+++|++|||+.+..
T Consensus 160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii 237 (742)
T TIGR01299 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237 (742)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3456677666554443322 2 122222 233445666653 3567888999999999999999999999977554
No 42
>PRK12382 putative transporter; Provisional
Probab=93.34 E-value=0.17 Score=48.56 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=50.0
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+...+..+|.+++..++..-+.-+...-+. .+.+++|.+. ..+.+++..+...++.+.+|.++||++||+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (392)
T PRK12382 10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ 86 (392)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence 445566777776655444332222222233 2456777764 3578899999999999999999999999987554
No 43
>PRK03699 putative transporter; Provisional
Probab=93.33 E-value=0.18 Score=48.65 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+-+|..++.+++..+.-.+.-....++.++++.+. .....++..++..+|.+..|.++||++||+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~ 77 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIF 77 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34666666666655554444445677888888864 3467788889999999999999999999976544
No 44
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=93.32 E-value=0.19 Score=49.84 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhcchhheecc----hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNN----LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n----~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+|..|...+++...-.+.-+| ...+.++++.++ ..+..+.+.+..+++.+..|+++||++||+.+..
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 4666666555544433222222 445667777764 3467888899999999999999999999987655
No 45
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=93.29 E-value=0.19 Score=49.38 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=53.8
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--c--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
..+.+|++.+|...+..++..|......+++....++.+.. + +..+.++.-..-.+||+++|++.||+++|+.+
T Consensus 225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l 302 (410)
T TIGR00885 225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL 302 (410)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 35678888999988888888888766667777777665322 1 13345555567789999999999999887653
No 46
>PRK12307 putative sialic acid transporter; Provisional
Probab=93.25 E-value=0.21 Score=48.33 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=51.9
Q ss_pred CHHhhhhhhhHHHHHHHHH---HhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~---~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.++.++++.+|.+...+. +..+....+.+......++.|.+. .....++..+++.+|++.+|+++||++||+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~ 299 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF 299 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 4678888888886554332 222322233445555666666653 34567788899999999999999999988654
Q ss_pred HH
Q 021110 282 CS 283 (317)
Q Consensus 282 ~r 283 (317)
..
T Consensus 300 ~~ 301 (426)
T PRK12307 300 SI 301 (426)
T ss_pred HH
Confidence 43
No 47
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=93.22 E-value=0.24 Score=47.31 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-------hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-------TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-------~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+++++.+|+..++..-+.-++.--+..+.+++|.++. ....++..+...++.+.+|.++||++||+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 89 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR 89 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 4467777776655433333444456777778877532 345667788899999999999999999877555
No 48
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=93.14 E-value=0.13 Score=47.89 Aligned_cols=67 Identities=15% Similarity=0.036 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
||.++...++.....-+....+..+..+++.++ .....++..+...++.+.+|.++||++||+.+..
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~ 69 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIG 69 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHH
Confidence 354554444433333333333444555666553 3567888889999999999999999999876444
No 49
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.06 E-value=0.24 Score=47.79 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhhc----chhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g----~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++|++.+.+.+... ..-++.-...++.++++.+.. ....+...++..++.+..|.++||++||+.+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 83 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLA 83 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 466666665554443 233344456677888887643 457788999999999999999999999876444
No 50
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=92.99 E-value=0.28 Score=46.32 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=57.0
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
..++++.+|+..+.+++-.|+...+.+......++ ++.+ ......+.+..+-.+||++.+.++||+++++.+.
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~ 212 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA 212 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 46778899999999999888887766656655543 3554 3457889999999999999999999999776543
No 51
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=92.97 E-value=0.22 Score=50.16 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
..+.+|+++-|++-+.++|..|.=.-..+-.....++ .+++. .....+.++...++|.+.|+++||+++++...
T Consensus 245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~ 320 (462)
T PRK15034 245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTL 320 (462)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHH
Confidence 4678999999999998888776544333344444444 22222 22345667889999999999999999886533
No 52
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=92.91 E-value=0.24 Score=46.73 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.++.++++.+|.+.+.+.+..+...........+.+ .++.++ .....+...+...+|+++.|+++||+++|+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR 276 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 456778888888776655544433333333344443 456553 345677788899999999999999999876543
No 53
>PRK03893 putative sialic acid transporter; Provisional
Probab=92.76 E-value=0.25 Score=48.87 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++.+++.+++..-...+.......+.++++.+. .....++..++..+|.+..|.++||++||+.+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 90 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4555555554433333333344567777888764 3567888889999999999999999999876444
No 54
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=92.73 E-value=0.22 Score=48.28 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+++||.+++..++..-...++...+..+.++++.++ ....++...+...++-+..|.++||++||+.+-.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~ 73 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFI 73 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHH
Confidence 458999988777755443344444556667777654 2456778888899999999999999999987544
No 55
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=92.60 E-value=0.28 Score=45.63 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=38.2
Q ss_pred chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-...+.++++.++ .....++..++..++.+.+|.++||++||+.+..
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~ 73 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML 73 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH
Confidence 3456667777764 3568899999999999999999999999987544
No 56
>PRK10133 L-fucose transporter; Provisional
Probab=92.58 E-value=0.23 Score=49.10 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=51.1
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++.+++++||...+..++..+.-....+-.... .+ .+|.++ .........++..+||+..|.+.||+++|+....
T Consensus 251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~ 330 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3567889999987766655554432222222222 23 346553 3567889999999999999999999998876433
No 57
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=92.52 E-value=0.34 Score=46.53 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.|.++..+++....-..+.+....+.++.|.++ .....++..+++.+|++..|+++||++||+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL 289 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444443333344455666777777653 356778888999999999999999999876543
No 58
>PRK10054 putative transporter; Provisional
Probab=92.44 E-value=0.27 Score=47.78 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+++|.+.+..++....--++..=+.. +.+.+|.+. ..+..++..+...++++..|.++||++||+.+..
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~ 78 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL 78 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence 36888888666654333333333333 345677764 4567788888899999999999999999875443
No 59
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=92.41 E-value=0.38 Score=46.25 Aligned_cols=74 Identities=15% Similarity=-0.081 Sum_probs=51.7
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.++.+|+++||.+.+..++..++-..+........+++|.++. ....++..+...++.+.+|.+.||+++|+.
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~ 272 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL 272 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence 45789999999999888877666655666677776777777643 345556666666666666666666665543
No 60
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=92.39 E-value=0.22 Score=48.64 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.++++.++ ..+..+++.++.++|.+..|+++||++||+.+..
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 78 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG 78 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence 345556553 3568889999999999999999999999886443
No 61
>PRK03633 putative MFS family transporter protein; Provisional
Probab=92.38 E-value=0.41 Score=45.89 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=47.0
Q ss_pred CHHhhhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.++.++++.+|......++ +...+.. .+-+....+..|.+. ....+++..+++.+||+..|+++||+++|+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l 268 (381)
T PRK03633 192 SIWPMLKLRQARLGVNGCIISGIVLGSL-YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVL 268 (381)
T ss_pred CHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHH
Confidence 34667888888865442222 1111211 112344445556653 34578888899999999999999999988654
No 62
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=92.24 E-value=0.45 Score=49.48 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHhhcch---hhee-cchHHHHHHhCCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 213 VKADFWLLWFVYFLGVGAG---VTVL-NNLAQIGVALGVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~G---l~~i-~n~~~i~~al~~~~-~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+++.|+..+..+.+..-+. +..- +-+.+|.+++|.++ .+++++..++.++.+-.+.|-+||.+|||+-
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Confidence 4456666665444433322 2222 22578899998864 4577788889999999999999999999865
No 63
>PRK03545 putative arabinose transporter; Provisional
Probab=92.21 E-value=0.21 Score=48.01 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.++++.+. ....+++..+...++.+.+|.++||++||+.+..
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 79 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIG 79 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 578888888864 3567888888889999999999999999976444
No 64
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=92.21 E-value=0.32 Score=48.74 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r 283 (317)
.+|.+++..++-..+-..+..++....++ +|.+ ++...++..++.+.++.+.+|+++|| ++||+.+..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 46777766665333333344455555543 5665 34578899999999999999999999 899987544
No 65
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=92.19 E-value=0.24 Score=49.90 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=67.7
Q ss_pred CCCCHHhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhh--
Q 021110 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS-- 278 (317)
Q Consensus 204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~-- 278 (317)
.+..++++++++.+|.+|+..++..-+=.++...... +-+-++++ +...+.++=-+...+-++++|.++|++.+|
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4668899999999999999887755444333333333 33446775 445677788888999999999999999885
Q ss_pred -hhHHH-HHHHHHHHHHHHHHHHH
Q 021110 279 -LLLCS-YLRSIKLGRKCKCFLVL 300 (317)
Q Consensus 279 -~~~~r-~~~~~~~~~~~~~~~~~ 300 (317)
.+..| .+-+++.+..+++.+++
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l 350 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVL 350 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHee
Confidence 11233 55566666666666555
No 66
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=91.82 E-value=0.42 Score=45.93 Aligned_cols=47 Identities=21% Similarity=0.127 Sum_probs=34.9
Q ss_pred chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-...+.+..|++. ......+..+++.+|+++.|+++||++||+.+..
T Consensus 306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI 354 (481)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3444556667654 3456778888999999999999999998876443
No 67
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=91.80 E-value=0.22 Score=48.87 Aligned_cols=76 Identities=9% Similarity=-0.049 Sum_probs=49.9
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC----------chhHHHHHHHhhhcccccccchhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN----------DTTELLCLFSLCNFAGRLGSGVLSEHYVR 277 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~----------~~~~~vsl~si~n~~GRl~~G~~SD~l~r 277 (317)
..+.+|++.||.+++..++..+.-..+........++.|++ ......++.++....+++..|.++||+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45688899999888776665332212112222223344432 23567888888999999999999999999
Q ss_pred hhhHHH
Q 021110 278 SLLLCS 283 (317)
Q Consensus 278 ~~~~~r 283 (317)
|+.+..
T Consensus 281 r~~l~~ 286 (418)
T TIGR00889 281 KKVMLL 286 (418)
T ss_pred HHHHHH
Confidence 876443
No 68
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=91.76 E-value=0.37 Score=46.66 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+...|.+...+.+..+.+.. .+-...+.++++.++ ..+..++..++..++.+..|.+.||++||+.+..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~ 83 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLE-QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI 83 (402)
T ss_pred chhhHHHHHHHHHHHhhhhH-HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 33445555555555565533 334456667887763 4568899999999999999999999999987554
No 69
>PRK11663 regulatory protein UhpC; Provisional
Probab=91.62 E-value=0.44 Score=46.75 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-+|.+++.+++.......+-.-+.++.+++|.+. ..+..++..+...++++..|+++||++||+.+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~ 93 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGI 93 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHH
Confidence 3444444444433322233334566777787764 3567888999999999999999999999876444
No 70
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=91.51 E-value=0.35 Score=44.35 Aligned_cols=66 Identities=26% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 218 w~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
|.+....++..............+.++++.++ .....++..+.+.++.+.+|.++||++||+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~ 69 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLL 69 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHH
Confidence 44444443333333333344555566666653 3567788889999999999999999999875433
No 71
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=91.37 E-value=0.61 Score=45.67 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=49.5
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++++.++++.+|.+.+.+.+....+.. +..-..++. +.+|.+. .....++..+...++..+.|+++||++||+..
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~ 312 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM 312 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 467788899999877665554333322 223344444 3456653 23566677778888999999999999988653
No 72
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=91.36 E-value=0.74 Score=46.44 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+.+|+-++.+..+...=.+.---..++.+ +++.+. ..+++++..+..+++|+..|.+.||+|.|+....
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 346777776665544433332222334444 566653 4568888999999999999999999998876444
No 73
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=91.27 E-value=0.66 Score=43.58 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=46.1
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++.++++++|.++...++..+....+........ +.+|.++. ....++..+.+..+++..|.++||++||+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 268 (375)
T TIGR00899 193 RGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM 268 (375)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH
Confidence 3456777888877766555443333333333333 44566532 3445566667788999999999999988653
No 74
>PRK10489 enterobactin exporter EntS; Provisional
Probab=91.25 E-value=0.25 Score=47.92 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=48.2
Q ss_pred hhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 211 AFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++++|+.+++..++ ..+.+.. .--+..+.++++.+. ..+..+...+...++.+..|.++||++||+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~ 87 (417)
T PRK10489 13 LKTHPAFRAVFIARFISIFGLGLL-GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL 87 (417)
T ss_pred HHhCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence 3457788877775433 3333333 223344556666553 3567888899999999999999999999876443
No 75
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=91.10 E-value=0.53 Score=44.54 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=37.0
Q ss_pred chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....+.++++.++ .....++..++..++.+..|.++||++||+.+..
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 82 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT 82 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3455666777764 3567888999999999999999999999986554
No 76
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=91.03 E-value=0.59 Score=44.73 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=49.0
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
++.++++.+|...+...+.......+.+-...+. +.+|.++ .....+..++.+.+|++..|+++||++||+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~ 273 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML 273 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4677888888776665554444333333222333 3456653 245667788899999999999999999876543
No 77
>TIGR00895 2A0115 benzoate transport.
Probab=90.89 E-value=0.6 Score=43.84 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~ 278 (317)
+.+|.+++.+++.......+.+....+.+..+.+. .....++.++++.+|+++.|+++||++||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 34555555554443333223333344555666653 34677888999999999999999999987
No 78
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.82 E-value=0.6 Score=44.00 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHhhhhhhh---HHHHHHHHHHhhcchhheecchHHHHHHhCCCchh--HHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT--ELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~---Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~--~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+++.++++. +|.+.+..++...+............+++|.+... ...++.+ +...+|.+++|+++||++||+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 278 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL 278 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555554 66666554443332223334445555667766432 3444444 56789999999999999988774
Q ss_pred HH
Q 021110 282 CS 283 (317)
Q Consensus 282 ~r 283 (317)
..
T Consensus 279 ~~ 280 (356)
T TIGR00901 279 LL 280 (356)
T ss_pred HH
Confidence 43
No 79
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=90.69 E-value=0.62 Score=42.67 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
+.+|.+++..++.......+......+.++. +.++ .....++..+.+.+|++.+|.++||++||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777777777777666666666666676665 5543 346778888999999999999999999987
No 80
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=90.51 E-value=0.63 Score=44.02 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=49.9
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++.++++.+|...+..++..+.-..+........+ ..|.+. .....++.+++..+|++..|++.||++||+.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 345677778887666555444333333333333443 346553 3457778889999999999999999999876443
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=90.40 E-value=0.7 Score=44.34 Aligned_cols=74 Identities=15% Similarity=0.005 Sum_probs=47.7
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.++.+|++.+|.+.+..++....-..+.+......++.|.++ ...+.++..+.+..+++..|.+.||+++++.
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~ 272 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL 272 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 5688999999998877655543332223333344446667653 2345556667777778888888888777655
No 82
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=90.38 E-value=0.57 Score=46.81 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=35.0
Q ss_pred hHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
...+.+++|.+.. ....+...++..+|.+..|+++||++||+.+..
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~ 106 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF 106 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3456677787643 345667778889999999999999999976555
No 83
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=90.35 E-value=0.78 Score=42.51 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=50.5
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.++.++++.+|.+.+..++..........+..+. .+. ++.++ .....++.++++.+|++..|.++|+.+|++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM 280 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 4567888889988877666555554444233333 333 46553 34567778889999999999999998877543
No 84
>PRK15075 citrate-proton symporter; Provisional
Probab=90.23 E-value=0.89 Score=44.53 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 212 FVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.+++..|.+.....+....+...+.+ ...+.+. +|.+.. .....+.++++.+|+++.|+++||++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~ 306 (434)
T PRK15075 234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV 306 (434)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 44455555433333333333333333 5555554 576532 345667888999999999999999998764
No 85
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=90.02 E-value=0.48 Score=44.13 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=36.2
Q ss_pred HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+.+++|.++ .....++..++..++.+..|+++||++||+.+..
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 65 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI 65 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence 45666777764 3568889999999999999999999999876444
No 86
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=90.00 E-value=0.64 Score=44.47 Aligned_cols=88 Identities=16% Similarity=0.054 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKL 290 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~ 290 (317)
.+-||+++++++|---+=.-.|.--....+ .+|.+.+ ...-|.+-.-++.---.+|.++|+.|++.+ ....+.
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~----wv~~a~ 338 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW----WVASAC 338 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh----hHHHHH
Confidence 368999999888765444444433333333 3466532 223334334455556678999999999865 334556
Q ss_pred HHHHHHHHHHHHhhc
Q 021110 291 GRKCKCFLVLFEKFQ 305 (317)
Q Consensus 291 ~~~~~~~~~~~~~~~ 305 (317)
.++..+|..+|-+|-
T Consensus 339 ~~tl~~H~~l~Ft~l 353 (459)
T KOG4686|consen 339 ILTLLGHSGLFFTFL 353 (459)
T ss_pred HHHHHHhhhHHhhhc
Confidence 667899998855543
No 87
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=89.88 E-value=0.46 Score=43.93 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=33.3
Q ss_pred HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 240 QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 240 ~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.+.++++.+. .....++..+.+.++.+..|.++||++||+.+
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l 65 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL 65 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence 5666777653 45688889999999999999999999988753
No 88
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=89.83 E-value=0.95 Score=43.77 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-hHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
+++.++++++|.+++.++|..+.-..+.+=+.++.++.+++.. ....++. ...|-+..|+++|++.||+
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~---~~~g~~g~~~~~d~~~r~~ 254 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALA---ILAGLIGVAVIPDRVARAG 254 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHH---HHHHHHHHHHhhHHhhhhh
Confidence 5688999999999998888766655554446677776666532 2233333 3344455699999998753
No 89
>TIGR00898 2A0119 cation transport protein.
Probab=89.65 E-value=0.65 Score=46.18 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+.++.++++.+|...+...+.+.......+......+.++.+ ......+.++....|+++.|+++||++||+.+..
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~ 390 (505)
T TIGR00898 314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA 390 (505)
T ss_pred CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4788999999998887766554433222111111111222222 2233446677788899999999999999865433
No 90
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=89.50 E-value=0.9 Score=43.77 Aligned_cols=76 Identities=12% Similarity=-0.129 Sum_probs=47.8
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++.++++.+|.+.+.+++..............+. +.++.++. ........++..+|++..|.++||+++|+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35678888999887766554433222222233333 34566533 233444566788999999999999998765433
No 91
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=89.40 E-value=0.96 Score=45.70 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=43.7
Q ss_pred hhhhhh-hHHHHHHHHHHhhcchhheecchHHH-HHHhCCCch--hHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110 210 EAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~-~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r 283 (317)
+.++.+ .+|.++...++...+--.+...+... .+.+|.++. ...++..........+.+|+++|| ++||+.+..
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~ 93 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML 93 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 344554 58988887766554432333333333 356777643 334444444444445688999999 599876444
No 92
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=89.37 E-value=0.74 Score=50.64 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=48.5
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc----hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~----~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+++.+|+.+++..++..-...++..-+. .+...++.+. ..+..+++.+...++.+.+|+++||++||+.+..
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~ 82 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRI 82 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHH
Confidence 568888999998877775433322222121 2222333332 2346677888899999999999999999976554
No 93
>PRK11043 putative transporter; Provisional
Probab=89.28 E-value=1.1 Score=43.13 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=47.6
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.++.++++++|...+.+.+..+.-..+.+-...+.+..|.+.. ........++..+|++..+.+.||+++|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~ 271 (401)
T PRK11043 195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL 271 (401)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 45678888899877666555443333333333444555666532 3344455677788899999999998877643
No 94
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=89.25 E-value=1.2 Score=42.57 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=30.4
Q ss_pred HHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 242 GVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 242 ~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.++.+........+++.++..+||+..|.++||+++|+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 282 (399)
T PRK05122 243 YAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA 282 (399)
T ss_pred HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444544445667788899999999999999999887543
No 95
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=89.18 E-value=0.88 Score=43.60 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred HHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 223 VYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 223 ~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+....+.|+....--..+.+++|.++ .....++..+...++.+..|.++||++||+.+..
T Consensus 24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (399)
T PRK05122 24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF 86 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence 333344444432222233566777664 3567888999999999999999999999988666
No 96
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=89.01 E-value=0.5 Score=46.35 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=38.3
Q ss_pred cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.....+.+++|.+. .....+...+++.++.+..|.++||++||+.+..
T Consensus 23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (485)
T TIGR00711 23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI 72 (485)
T ss_pred HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence 34567778888753 4568889999999999999999999999876433
No 97
>PRK12307 putative sialic acid transporter; Provisional
Probab=88.84 E-value=1 Score=43.44 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=36.9
Q ss_pred chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....|.++++.++ .....++..++..+|.+.+|.++||++||+.+..
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~ 88 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW 88 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3345566777764 3567888899999999999999999999877554
No 98
>PRK11043 putative transporter; Provisional
Probab=88.80 E-value=0.83 Score=43.88 Aligned_cols=51 Identities=27% Similarity=0.280 Sum_probs=40.6
Q ss_pred heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 233 ~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++.-...++.++++.++ .....++..++..+|.+.+|.++||++||+.+..
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 76 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLA 76 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHH
Confidence 44455667778888764 3568889999999999999999999999987544
No 99
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=88.35 E-value=0.94 Score=43.35 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=40.2
Q ss_pred heecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 233 TVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 233 ~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++...+.++.++++.++. ....++..++..++.+..|+++||++||+.+..
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 73 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIP 73 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHH
Confidence 445567788888888753 457788888999999999999999999865433
No 100
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=88.15 E-value=1.7 Score=42.80 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=31.3
Q ss_pred CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 246 GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 246 ~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+. ..+..+...++..+|.+.+|+++||++||+.+..
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~ 98 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 98 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHH
Confidence 5553 3467889999999999999999999999976544
No 101
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=88.06 E-value=1.1 Score=42.97 Aligned_cols=77 Identities=16% Similarity=-0.026 Sum_probs=50.7
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhHHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.++.+|++.+|.+....++...+......-.....+++|++.. .....+.. +...+|.+..|.+.||+++|+....
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 279 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL 279 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45788888888887776665544333333334455667777643 33444444 4667889999999999998866443
No 102
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=88.00 E-value=1.2 Score=44.24 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=35.3
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.++++.+. .....++..+...++..++|+++||++||+.+-.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 89 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA 89 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh
Confidence 556667777753 3456777778888999999999999999876443
No 103
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=88.00 E-value=1.9 Score=42.67 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+..+.+|++.-|..+++.++..+...+...-++++-++. |.+. .+...-+++++..+|-++.|.++|| +.++.
T Consensus 203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~ 278 (394)
T COG2814 203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA 278 (394)
T ss_pred HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence 458899999999999999999999999888889998876 4443 3556678999999999999999999 55444
No 104
>TIGR00895 2A0115 benzoate transport.
Probab=87.40 E-value=1.3 Score=41.46 Aligned_cols=47 Identities=19% Similarity=0.090 Sum_probs=35.8
Q ss_pred chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....+.+.++.+. .....++..++..+|.+..|.++||++||+.+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 87 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW 87 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 3455666777653 3456778888999999999999999998876544
No 105
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=87.37 E-value=1.3 Score=43.11 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 241 IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 241 i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+.+|.+.. .+..++..+...+.++..|.++||++||+.+..
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~ 81 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVT 81 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHH
Confidence 3456676643 456677777788889999999999999876444
No 106
>PRK10133 L-fucose transporter; Provisional
Probab=87.21 E-value=1.3 Score=43.89 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.|+.++++++...-.-.+...-..++.++++.++ ..+..+.+.++..++-+..|.++||++||+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~ 96 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 5666666665443333334444566666777764 3467888999999999999999999999987554
No 107
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=87.19 E-value=0.93 Score=45.43 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=38.4
Q ss_pred chHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 237 NLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 237 n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
-+.+|.++++.+ +.+..++...++.+.+-+.+|.++||++||+.+..
T Consensus 28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~ 76 (495)
T PRK14995 28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML 76 (495)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 357788888775 34678888899999999999999999999987544
No 108
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=86.71 E-value=1.1 Score=44.04 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=33.5
Q ss_pred HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.|.++ .....++..++..+|.+.+|+++||++||+.+..
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~ 96 (438)
T TIGR00712 52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPA 96 (438)
T ss_pred HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHH
Confidence 334456653 3567888999999999999999999999876554
No 109
>PRK09528 lacY galactoside permease; Reviewed
Probab=86.17 E-value=0.8 Score=44.47 Aligned_cols=74 Identities=7% Similarity=-0.106 Sum_probs=44.0
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.++.+|++.+|.+.+.+.+....-.+..........+. +.+. .....++..+.+.+|.+.+|+++||+++|+.+
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 295 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL 295 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence 34677788888766544333322112222222322222 2221 23566777788999999999999999998753
No 110
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=86.12 E-value=2.2 Score=41.28 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=45.4
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~ 276 (317)
..++.++++.+|.+.+..++..+..........+ ..+.+|.+. .....+..++++.+|+++.|.+.||..
T Consensus 208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~ 280 (394)
T PRK10213 208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV 280 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467889999999877655544433222233333 344566653 345667788889999998888888843
No 111
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=86.07 E-value=2.4 Score=41.00 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcchhhe--ec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 218 WLLWFVYFLGVGAGVTV--LN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 218 w~l~~~~~~~~g~Gl~~--i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
|++...++.+.-...+. ++ -+..+.++++.++ ....+++..++..++-+..|.++||++||+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~ 79 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAI 79 (393)
T ss_pred HHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHH
Confidence 66666665555444332 11 2345666777764 3568888888999999999999999999987544
No 112
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=85.82 E-value=2.1 Score=42.26 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK 293 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~ 293 (317)
..|.+-+.-|+...+..+..+=+.+|+++++.+. +-..+|+.+.+-.+|-.....+.||+.||+- +...+.+.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-----Ll~~l~lF 88 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-----LLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-----HHHHHHHH
Confidence 4577777778888888999999999999999975 3479999999999999999999999999864 33444445
Q ss_pred HHHHHHH
Q 021110 294 CKCFLVL 300 (317)
Q Consensus 294 ~~~~~~~ 300 (317)
.++|++-
T Consensus 89 i~~n~l~ 95 (394)
T COG2814 89 IVSNLLS 95 (394)
T ss_pred HHHHHHH
Confidence 5666554
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=85.78 E-value=0.67 Score=43.08 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=36.5
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
...+.+++|.++ .....++..+++.++.+..|.++||++||+.+..
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 64 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV 64 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHH
Confidence 344566677653 3578889999999999999999999999877544
No 114
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=85.74 E-value=1.2 Score=41.96 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=40.0
Q ss_pred heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 233 ~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++.-....+.++++.++ .....++..++..+|++..|.++||++||+.+..
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 61 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILG 61 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHH
Confidence 34455667788888764 3567889999999999999999999999876443
No 115
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=85.10 E-value=1.5 Score=41.19 Aligned_cols=41 Identities=7% Similarity=-0.154 Sum_probs=31.5
Q ss_pred HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.+++|.++ .....++..+...++....|.++||++||+.+
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~ 66 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL 66 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Confidence 445667653 34567788888899999999999999988763
No 116
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=85.02 E-value=1.8 Score=44.07 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHhCCCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHH
Q 021110 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLC 282 (317)
Q Consensus 243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l-~r~~~~~ 282 (317)
+.+|.++ +....+...+...++.+..|+++||+ |||+.+.
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il 80 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 3466664 34567778888899999999999999 9887643
No 117
>PF13347 MFS_2: MFS/sugar transport protein
Probab=84.77 E-value=2.5 Score=41.21 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=54.1
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~-~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+++..++++|+.++...++...+-.+.........+.. +.++ .+.+..+..+.+.++-+++++++||++||+.+.-
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 467888899999988888876444443333444444543 4443 3456667788899999999999999999987554
No 118
>PRK10504 putative transporter; Provisional
Probab=83.77 E-value=2.2 Score=41.92 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=48.4
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+.++++.|+...+..++...+ ...... .....+. +|.+. ..+......+....++++.|.++||++||+.+..
T Consensus 255 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~ 332 (471)
T PRK10504 255 LKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVA 332 (471)
T ss_pred HHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 4688999999887766655433 333333 3333443 56553 2345566677788888999999999998876543
No 119
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=83.73 E-value=3.6 Score=41.05 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=31.9
Q ss_pred hHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 238 LAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 238 ~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+..+.+ .+|.+. .....+...++..+|++..|+++||++||+.+.
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 320 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI 320 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 444443 356653 234556677889999999999999999987543
No 120
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=83.60 E-value=2.6 Score=42.58 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=30.8
Q ss_pred HHHhCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021110 242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS 283 (317)
Q Consensus 242 ~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~~r 283 (317)
.+.+|.++ +...++.+....++.-+.+|+++|| +|||+.+..
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~ 86 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL 86 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence 34577664 3456666777777777889999999 999987554
No 121
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=83.57 E-value=2.8 Score=41.14 Aligned_cols=33 Identities=15% Similarity=-0.036 Sum_probs=29.1
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
...++...++..+|-+++|.++||++||+.+-.
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 467889999999999999999999999987544
No 122
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=83.32 E-value=1.1 Score=44.58 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccee
Q 021110 241 IGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVE 309 (317)
Q Consensus 241 i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (317)
+.++.+.+.. .++-|.+++.=+++.+.+|.+|||-..|+ ++.+.|++.++++++. .|.+++.
T Consensus 55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-----fm~~gLilsai~nil~--Gfs~s~~ 118 (448)
T COG2271 55 LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-----FMAFGLILSAIVNILF--GFSPSLF 118 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-----eehHHHHHHHHHHHHH--hhhhHHH
Confidence 4455556533 46889999999999999999999988776 4455555555555555 4444433
No 123
>PRK03893 putative sialic acid transporter; Provisional
Probab=83.30 E-value=2.4 Score=41.88 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=35.8
Q ss_pred cchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 236 NNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 236 ~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.....+.+ .+|.+. .....+...+++.+|++..|+++||++||+.+.
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~ 345 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV 345 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34555554 566653 456788899999999999999999999886543
No 124
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=83.28 E-value=2.5 Score=44.23 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=53.4
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHh-hhcccccccchhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSL-CNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si-~n~~GRl~~G~~SD~l~r~ 278 (317)
..++.++++.||...+..++..+.-..+..-+....+. ++.+. +.++.++..+ ...+|.++.|+++||++.+
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 45789999999999998888777666666667777665 46653 3445555555 4679999999999999854
No 125
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=82.93 E-value=2.5 Score=40.63 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=44.3
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheec-chHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
+.++.+|++++|.+.+..++.. ....... -.....++. +.+. .....++..+.+.++.+..|.+.||+++|+
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~ 285 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN 285 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4578899999987665443322 2222121 122222332 1111 234566777888999999999999999886
Q ss_pred h
Q 021110 280 L 280 (317)
Q Consensus 280 ~ 280 (317)
.
T Consensus 286 ~ 286 (396)
T TIGR00882 286 A 286 (396)
T ss_pred h
Confidence 5
No 126
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=82.83 E-value=3.3 Score=39.64 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+.++++.++ .....+...++..+|.+..|.++||++||+.+..
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 35667777764 3567888899999999999999999999977544
No 127
>PTZ00207 hypothetical protein; Provisional
Probab=82.81 E-value=2.5 Score=44.02 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhcchhheecch--HHHHHHhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNL--AQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~--~~i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+||.+...+.+...+|.++..++ .++.+++|++... ...++ ...-+.+-+.+|+++||+++|+.+
T Consensus 26 Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl 94 (591)
T PTZ00207 26 RFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF 94 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34455555555555666665554 5677778876432 22222 122233455789999999998653
No 128
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=82.70 E-value=1.7 Score=42.10 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HH-hCCC-chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a-l~~~-~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
.+++.++++.||.+.+..++...+. ...+...... +. ++.+ ....+.++..++..+|.+++|.++||++||+.+
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~ 290 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAF-NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF 290 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH-HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 3467788899998877665543322 2222221111 11 1211 123455667888999999999999999988654
No 129
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=82.56 E-value=2.6 Score=40.39 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=28.8
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....++..++..++.+.+|.++||++||+.+..
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 106 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI 106 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence 467888999999999999999999999876544
No 130
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=80.77 E-value=4 Score=39.34 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=45.9
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++.+.++++++|.+.+..++....... ...+...+.+.+|.+.. ....+..+ +...+|.++.|.+.||+++|+..
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l 279 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL 279 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356788999999877765554332221 11222234455676643 23333444 35788999999999999987654
No 131
>PRK12382 putative transporter; Provisional
Probab=80.77 E-value=5 Score=38.27 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=30.9
Q ss_pred HHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 241 i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
..++.+.+......+..++++.+|++..|.++||+++|+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 283 (392)
T PRK12382 242 YFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI 283 (392)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence 334445544445566778888999999999999999876643
No 132
>PRK09848 glucuronide transporter; Provisional
Probab=80.64 E-value=2.1 Score=42.04 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=36.9
Q ss_pred hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHHH
Q 021110 245 LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLRSIKLGRKCKCF 297 (317)
Q Consensus 245 l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r-~~~~~~~~~~~~~~ 297 (317)
+|.+. .....++..++.++.-+.+|+++||.++|++..| |+...++..+..+.
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 35543 3457778889999999999999999977766566 66555444443333
No 133
>PRK15011 sugar efflux transporter B; Provisional
Probab=80.47 E-value=3.6 Score=39.58 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=31.4
Q ss_pred chHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 237 NLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 237 n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
...... +.++.++ .....++..+...+|+++.|.++||++||+.+.
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~ 286 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR 286 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 344444 3456653 234556666777889999999999999986543
No 134
>PRK09952 shikimate transporter; Provisional
Probab=80.27 E-value=4.3 Score=39.88 Aligned_cols=72 Identities=11% Similarity=-0.043 Sum_probs=40.2
Q ss_pred hhhhhhHHHHHHHHHHhhcchhh-eecchHH-HHHHhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 211 AFVKADFWLLWFVYFLGVGAGVT-VLNNLAQ-IGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 211 ~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~-i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.++++.+|.+-+...+....+.. ....... +.+.++.++.. ....+.++.+.+|.+++|+++||++||+.+.
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~ 320 (438)
T PRK09952 245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI 320 (438)
T ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 55666777664432222222221 2222222 22345655432 2334566778899999999999999986543
No 135
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=79.34 E-value=17 Score=40.28 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=55.2
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++...+++.+|.+.+.+++....+..+......+.+. +|.+. ...+.+..+++..+|.++.|.++|+..+++.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 35667788899998887777665555555556666654 46653 3567788999999999999999987766554443
No 136
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=78.69 E-value=3.8 Score=45.12 Aligned_cols=74 Identities=20% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCch---hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT---TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~~---~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+.+.++++.+|.+.+.+++....+..+........+ .+|.+.. .++.++..++..+|.+++|.++|++++++.+
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~ 302 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLV 302 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccch
Confidence 456777888898877766666655555555555554 3566533 4567778888999999999999998876543
No 137
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=78.35 E-value=5.5 Score=37.53 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+|.+. .....++..++..+|++..|+++||++||+.+..
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~ 309 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVC 309 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHH
Confidence 3456653 3457788899999999999999999999876443
No 138
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=77.34 E-value=5.5 Score=38.98 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcchhheec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 216 DFWLLWFVYFLGVGAGVTVLN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.|+++...++ .+|...-+++ -..++.++++.++ .....+...++..++.+..|++.||++||+.+..
T Consensus 4 ~~~~~~~~f~-~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 4 PFALITSLFA-LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHH-HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3555554333 3333332221 2244555667664 3467788889999999999999999999986544
No 139
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=77.17 E-value=5 Score=40.62 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.4
Q ss_pred eecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhh----hhhhhhHHH
Q 021110 234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH----YVRSLLLCS 283 (317)
Q Consensus 234 ~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~----l~r~~~~~r 283 (317)
...++..+.+.+|.+. ....+.+-.+...+.-.+.|++||| +|||+.+-.
T Consensus 23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il 78 (477)
T TIGR01301 23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIA 78 (477)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHH
Confidence 3456677778888864 3456677778899999999999995 888876543
No 140
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=77.06 E-value=5.6 Score=37.85 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=24.3
Q ss_pred HHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 253 LLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 253 ~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
..++..+.+.+++...|.++||++||+.+.
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~ 292 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKILI 292 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 455667888899999999999999886543
No 141
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=75.97 E-value=1.6 Score=44.10 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.8
Q ss_pred HHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 255 CLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 255 sl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..-.++|.+|.+++|++.|++|||+.+-.
T Consensus 91 ~~A~vGti~GQl~FG~lgD~~GRK~vYG~ 119 (538)
T KOG0252|consen 91 AAALVGTIFGQLFFGWLGDKFGRKKVYGK 119 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhH
Confidence 34557899999999999999999987665
No 142
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=75.92 E-value=5.8 Score=43.92 Aligned_cols=74 Identities=20% Similarity=0.119 Sum_probs=42.8
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc-------hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND-------TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~-------~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
++++++.+|+.+|+..++..-.--+....+..+.. .+..+. ..+..++..+...+.-+++|+++||++||+.
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 35788889998888766544332222111121111 221111 1234445556677788889999999999876
Q ss_pred HH
Q 021110 281 LC 282 (317)
Q Consensus 281 ~~ 282 (317)
+.
T Consensus 85 ~~ 86 (1140)
T PRK06814 85 AK 86 (1140)
T ss_pred HH
Confidence 43
No 143
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=75.85 E-value=4.3 Score=39.81 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=34.1
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
...+.+..|.+. ......+.++.+.+|.++.|+++||++||+.+..
T Consensus 294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~ 341 (479)
T PRK10077 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341 (479)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 345556667653 3445567888999999999999999998876443
No 144
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=75.15 E-value=4.6 Score=39.03 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=34.9
Q ss_pred hHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 238 LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 238 ~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.++.++++.++. ....+.+.++..++.+..|+++||++||+.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~ 58 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF 58 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 4567778877643 467888899999999999999999998754
No 145
>PRK11010 ampG muropeptide transporter; Validated
Probab=75.04 E-value=6.7 Score=39.40 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=42.8
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheec-chHHH-HHHhCCCch--hHHH-HHHHhhhcccccccchhhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQI-GVALGVNDT--TELL-CLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i-~~al~~~~~--~~~v-sl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+.+.+++.++|.+....++.. .+..... -.... .+.+|.+.. .... .+..++..+|.++.|+++||+++|+.
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~-~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYK-LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456677777886665443322 2222111 12223 345677643 2333 34457888999999999999998754
No 146
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=73.88 E-value=2.5 Score=42.40 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=27.2
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+..+++-++..+|-+++|.+||++|||..+..
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~ 153 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLV 153 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHH
Confidence 345677888899999999999999999976444
No 147
>PRK10489 enterobactin exporter EntS; Provisional
Probab=73.86 E-value=8.2 Score=37.25 Aligned_cols=69 Identities=14% Similarity=-0.054 Sum_probs=41.6
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~ 278 (317)
+..++++.+|.+++..++....+ .+........+. +|.+. .....++.++++.+|++..|+++|+..++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~ 289 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG 289 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 44567777776665444332211 122223344454 56653 34567788899999999999999875443
No 148
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=73.86 E-value=3.5 Score=41.54 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=30.1
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.+++..++++.+|-+.+|.++|++|||+.+.-
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~ 124 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLL 124 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 589999999999999999999999999987554
No 149
>TIGR00898 2A0119 cation transport protein.
Probab=73.79 E-value=2.1 Score=42.54 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=28.6
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+..++..++..+|.+++|.++||+|||+.+..
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~ 162 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLL 162 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHH
Confidence 467888999999999999999999999876444
No 150
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=73.69 E-value=11 Score=35.93 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCchhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.++.++++.+|...+..++.. .+.....+ ...+.++ +|.+.. ..++....+..|.++.+.+.+++.+|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 271 (394)
T PRK11652 200 YRTLLSNRRFNCYLLMLIGTL-AGIAVFEACSGVLMGAVLGLSSM--TVSILFILPIPAAFFGAWFAGRPNKRFS 271 (394)
T ss_pred HHHHHcChHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888886655443322 22222221 2223333 555432 2233333345555555555566655543
No 151
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=73.13 E-value=9.1 Score=38.09 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=26.2
Q ss_pred HHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 254 LCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+-+.+..-+=|-++.|++-|++|||++++.
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal 416 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMAL 416 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHH
Confidence 335667789999999999999999999888
No 152
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=72.01 E-value=4.4 Score=40.81 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=49.0
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+.++.+++.+|-++.+.+..+.|.=-....++-....-.||+ .+-..-.+.-++..+|-+++|.+-||..+-+...
T Consensus 258 si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~ 335 (480)
T KOG2563|consen 258 SIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTT 335 (480)
T ss_pred HHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 567889999999999888666554222222332222223554 3334445566778999999999999987655433
No 153
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=71.85 E-value=4.5 Score=39.03 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=28.9
Q ss_pred HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 244 ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 244 al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+|.+. ..+..++..++.++.-...|++|||..+|++-.|
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr 70 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFR 70 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcc
Confidence 345543 3467788889999999999999999665443333
No 154
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=71.71 E-value=12 Score=35.68 Aligned_cols=47 Identities=13% Similarity=-0.062 Sum_probs=36.0
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSY 284 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~ 284 (317)
+..+.+++|.+. ....+++.++...++.+.+|.++||++|+....|+
T Consensus 27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~ 75 (382)
T PRK11128 27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRL 75 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHH
Confidence 345567777763 35688889999999999999999999996554453
No 155
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=71.49 E-value=6 Score=37.17 Aligned_cols=46 Identities=24% Similarity=0.162 Sum_probs=37.2
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+..+.++++.+. .....++..++..++.+..|.++||++||+.+..
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 70 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAA 70 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHH
Confidence 445677777764 4568889999999999999999999999977544
No 156
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=70.05 E-value=3 Score=42.35 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=26.6
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
..|+++.+++.+|-+..|.+.|++|||..
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~ 92 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNA 92 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 57899999999999999999999999955
No 157
>PRK09952 shikimate transporter; Provisional
Probab=69.16 E-value=17 Score=35.66 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.0
Q ss_pred hhhcccccccchhhhhhhhhhhHHH
Q 021110 259 LCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 259 i~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++..+|.+..|+++||+|||+.+..
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~ 99 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLML 99 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHH
Confidence 4466777889999999999987544
No 158
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=68.77 E-value=8.7 Score=37.61 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 242 ~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.+++|.+. ..++.++..++..++.+.+|.++||++|+|+
T Consensus 30 ~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~ 70 (418)
T TIGR00889 30 SKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQK 70 (418)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34456653 3468899999999999999999999976443
No 159
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=68.39 E-value=13 Score=37.55 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=49.0
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH--hCCCchh--HHHHHHHhhhcccccccchhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA--LGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a--l~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~ 278 (317)
++++.-|.++.+.+.+.+++-. -|+..+...+.+... +|.+... .+.-+..+.+..|-+++|++.||++.|
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5566666677776666555433 555555555555543 6777543 345567788999999999999999988
No 160
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=68.19 E-value=11 Score=36.09 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred hHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+..+.+++|.+.. ...+++..+...++-+++|.++||.+|+....+
T Consensus 27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 74 (382)
T TIGR00902 27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALR 74 (382)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 6677778887643 457778888888888999999999988654434
No 161
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=68.13 E-value=11 Score=37.48 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 255 CLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 255 sl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++.-++-.+|-+.+|+++||+|||+.+..
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 92 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44446678899999999999999987555
No 162
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=67.85 E-value=10 Score=37.72 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=40.7
Q ss_pred hhhhhHHH---HHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 212 FVKADFWL---LWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 212 l~t~~Fw~---l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.|+.+||. .++.+++.+|+-+-... --..+..|.+ +.-+..+..++...+.-.+.|.++||++.|++.-.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~--iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~ 78 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFP--IWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLW 78 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHH--HHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence 35566763 34455555665433221 1112234554 33457777777777777889999999998877443
No 163
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=67.17 E-value=6.6 Score=39.26 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.8
Q ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....+...++..+|.+.+|+++||+|||+.+..
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 457888899999999999999999999987544
No 164
>PRK09669 putative symporter YagG; Provisional
Probab=66.97 E-value=7.9 Score=37.93 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=41.9
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh--CCCch-hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL--GVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al--~~~~~-~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.++++.||.+.+..++...+ ....+......... +..+. ..+.....+...+|-++++.++||++||+.+..
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTA-VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHH-HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 346778999999887765543222 22222222111111 11121 122233345667888889999999998876543
No 165
>PF12832 MFS_1_like: MFS_1 like family
Probab=66.20 E-value=10 Score=28.31 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 221 ~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
|+.++++.|+=+-++ +-..+++|.+.. .+..++.-+...++..++|.+.||.+|++..-+
T Consensus 9 yf~~f~~~g~~~Pfl---~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 9 YFFYFAALGCLYPFL---PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHHHHHhhh---hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 444444444433333 233445677643 356777778899999999999999999877544
No 166
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=65.84 E-value=2.9 Score=43.69 Aligned_cols=62 Identities=6% Similarity=-0.000 Sum_probs=45.2
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH--HHHHHHHHHHHHHHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS--YLRSIKLGRKCKCFLV 299 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r--~~~~~~~~~~~~~~~~ 299 (317)
+.+|-+.++.++ ..++++...+++.++-+..|++.||.+|++.+.. .+..+..+++++.|++
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~ 121 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFL 121 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHh
Confidence 345555666653 3467889999999999999999999999887555 4555555566666654
No 167
>PRK15011 sugar efflux transporter B; Provisional
Probab=65.77 E-value=17 Score=34.95 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=25.9
Q ss_pred HHHHhCCCchh--HHHHHHHh-hhcccccccchhhhhhhhhhhHH
Q 021110 241 IGVALGVNDTT--ELLCLFSL-CNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 241 i~~al~~~~~~--~~vsl~si-~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+.++++.+..+ +.++...+ ...++.+..|. +||++||+.+-
T Consensus 42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~ 85 (393)
T PRK15011 42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLI 85 (393)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHH
Confidence 45667776432 34444444 45566777777 89999988743
No 168
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=62.08 E-value=2.1 Score=41.72 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+..+...++..+|-+++|+++||+|||+.+
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~ 79 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPAL 79 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccc
Confidence 567788899999999999999999999763
No 169
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=60.92 E-value=26 Score=34.47 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+...+++.+++..|+=+.+ .+..-++.|.+.. .+..++..+...++-.++|+++||..+++++-+
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~---~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~ 72 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPY---LPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILA 72 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Confidence 34556666777777775554 3456677777643 457788888889999999999999876655433
No 170
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=59.76 E-value=28 Score=35.00 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=50.5
Q ss_pred hhhhhHHHHHHHHHHhhcch-hheecchHHHHHHhCCCch-hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 212 FVKADFWLLWFVYFLGVGAG-VTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 212 l~t~~Fw~l~~~~~~~~g~G-l~~i~n~~~i~~al~~~~~-~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.+++-++..-+..+-.. +| ..+++-..+|.+..|.++. .....+.++.|.+|=++++++-||++||.-+..
T Consensus 292 ~~~~~~i~~~l~~fqq~-tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~ 364 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQL-TGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLF 364 (513)
T ss_pred hHHHHHHHHHHHHHHHH-hCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44445555555555555 45 5577788888888888744 555667788888888888999999999865333
No 171
>PRK11010 ampG muropeptide transporter; Validated
Probab=58.83 E-value=23 Score=35.57 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=29.1
Q ss_pred hhcchhheecc-hHHHHHHhCCCchhH-HHHHHHhhhcccccccchhhhhh-----hhhhh
Q 021110 227 GVGAGVTVLNN-LAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHY-----VRSLL 280 (317)
Q Consensus 227 ~~g~Gl~~i~n-~~~i~~al~~~~~~~-~vsl~si~n~~GRl~~G~~SD~l-----~r~~~ 280 (317)
..|....+++. +....++.|.+...+ ..++++.. .++++++|.++||+ |||+.
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~ 82 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRG 82 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchH
Confidence 34444444444 333334445542221 22333333 36899999999999 77765
No 172
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=58.30 E-value=5.5 Score=30.88 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 255 CLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 255 sl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+..++++.++.+..|++.||++||+.+..
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~ 33 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLV 33 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHH
Confidence 34567788899999999999998876544
No 173
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=57.96 E-value=16 Score=37.30 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHHHHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLCSYL 285 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l-~r~~~~~r~~ 285 (317)
.-++-..|||--|--+.. -++.+.+-..+.++.+|.++ +.-+++.++-.-+.--++.||++||+ |+|++
T Consensus 23 l~~if~vE~WERFsyYGm---raiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t----- 94 (498)
T COG3104 23 LYLIFFVELWERFSYYGM---RAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT----- 94 (498)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-----
Confidence 457777788887776532 23333444444455566764 34567777777778888999999998 56654
Q ss_pred HHHHHHHHHHHHHHH
Q 021110 286 RSIKLGRKCKCFLVL 300 (317)
Q Consensus 286 ~~~~~~~~~~~~~~~ 300 (317)
+...-.++.+||++|
T Consensus 95 I~lGail~~iGh~~L 109 (498)
T COG3104 95 IVLGAILMAIGHLVL 109 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 233444677899999
No 174
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=57.56 E-value=25 Score=26.96 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=24.3
Q ss_pred cCC-CCCchhHHHHHHhhhhHHHHHHHHHHHHcC
Q 021110 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQ 35 (317)
Q Consensus 3 nFP-~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~ 35 (317)
.+| ++||.+.++......+++.+-..+.....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 466 458999999888888888777766665543
No 175
>PRK11462 putative transporter; Provisional
Probab=57.49 E-value=25 Score=34.93 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCch-hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~~-~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+++.++++.|+.+...+++....-.+.-.......+-. +..+. +.+.....+.+.+|=++++.++||++||+.+
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~ 296 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF 296 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 45567777777765544333222111111222222222 22221 2344556677888888999999999987654
No 176
>PRK10429 melibiose:sodium symporter; Provisional
Probab=56.87 E-value=13 Score=36.89 Aligned_cols=73 Identities=14% Similarity=-0.024 Sum_probs=40.6
Q ss_pred HhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCC-c-hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVN-D-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~-~-~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+..++++.|+.+.+..++......+ .+.... ..+..... + ...+.++.++...++-+++|.++||++||+.+.
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~-~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~ 300 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNI-INGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA 300 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHH-HhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3455777887776665554432222 111111 11111111 1 123444555777888889999999999987754
No 177
>PRK10054 putative transporter; Provisional
Probab=55.95 E-value=22 Score=34.37 Aligned_cols=73 Identities=8% Similarity=-0.051 Sum_probs=40.1
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh---CCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL---GVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al---~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.++.++++++|.+.+..++.....-.+.....+..... +.+.. ....++.++.-...+...|.++|+.++|+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 276 (395)
T PRK10054 199 PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL 276 (395)
T ss_pred hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH
Confidence 36788899999887776664444322323333333222 22221 234445555555666666777787776654
No 178
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=55.74 E-value=76 Score=31.69 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=56.8
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRS 278 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~ 278 (317)
+..++++++.+|.--+..+|-.|+..++=+-+.+.... .|.++ ++.+++..=++-.+||+..-++-.++...
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 78899999999999999999999999988888888887 45553 45688888889999995554443344433
No 179
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=55.47 E-value=23 Score=36.29 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=40.5
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCC-------CchhHHHHHHHhhh----cccccccchhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGV-------NDTTELLCLFSLCN----FAGRLGSGVLSEHYV 276 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~-------~~~~~~vsl~si~n----~~GRl~~G~~SD~l~ 276 (317)
.+.-+|+++|..+|+.-.+ +|+|.-.+..+. +.....++++..+. .+--+.+|.+.|++.
T Consensus 3 ~~aplr~~~Fr~lw~a~~i---------S~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 3 AFAPLRNRNFRRLWIAQLI---------SNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred CcccccCchHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3566889999999986543 344433332221 12234455544444 444467899999999
Q ss_pred hhhhHHH
Q 021110 277 RSLLLCS 283 (317)
Q Consensus 277 r~~~~~r 283 (317)
||+-+-.
T Consensus 74 rrrili~ 80 (524)
T PF05977_consen 74 RRRILIL 80 (524)
T ss_pred chHHHHH
Confidence 9987544
No 180
>PRK15075 citrate-proton symporter; Provisional
Probab=54.21 E-value=23 Score=34.58 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=27.7
Q ss_pred hHHHHHHhCCCchh---HHHHHHH-----hhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVNDTT---ELLCLFS-----LCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~~~---~~vsl~s-----i~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..++.++++.++.. +..+... +...+|-+.+|.++||++||+.+..
T Consensus 38 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 38 ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 34566777665422 2222221 2224567889999999999987544
No 181
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=53.45 E-value=5.7 Score=39.41 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
..-|.++++.++.-..+|-+||+.|||-.
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpv 100 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKPV 100 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchHH
Confidence 46778999999999999999999999965
No 182
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=51.32 E-value=15 Score=35.79 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=19.5
Q ss_pred hhhcccccccchhhhhhhhhhhHHH
Q 021110 259 LCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 259 i~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
++..+|-+.+|+++||+|||+.+..
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3344777889999999999987544
No 183
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=50.75 E-value=17 Score=39.04 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 254 LCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 254 vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+.++....|.++.|+++||++||+.+..
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~ 630 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAG 630 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 456678889999999999999999977544
No 184
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=49.83 E-value=31 Score=33.09 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=30.5
Q ss_pred hhcchhheecchHH-HHHHhCCCchh--HHHHHHHhhhcccccccchhhhhh-----hhhhhH
Q 021110 227 GVGAGVTVLNNLAQ-IGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHY-----VRSLLL 281 (317)
Q Consensus 227 ~~g~Gl~~i~n~~~-i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l-----~r~~~~ 281 (317)
..|....++...-+ +-++.|.+... ++.++... .+.++++|.++||+ +|||.+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~ 70 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW 70 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence 33444444443333 33566776432 23333333 58889999999999 776653
No 185
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=49.66 E-value=37 Score=34.68 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCC-chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~-~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.++|.+++.+....|.|+-.+.+-+.......+. ...+...+...+.++|-++.+.+..++..+++|+.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~ 201 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRG 201 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHH
Confidence 4699999999999999998888877766664443 45678888888999999999999998888888877
No 186
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.10 E-value=22 Score=35.60 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=38.6
Q ss_pred ccCCCC--CchhHHHHHHhhhhHHHH---HHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeEeecc
Q 021110 2 RNFPLS--RGTVSGILKGYAGIAAAI---YTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRAC 63 (317)
Q Consensus 2 ~nFP~~--RG~vvgi~k~~~GLSaaI---fs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~ 63 (317)
+.||++ ||.|.|+..+|.+||--+ |.-+.+-+ -+....|+ .|+++..+-+.+-++.+++.
T Consensus 186 d~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFl-VL~~v~Lld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 186 DVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFL-VLAIVLLLDGALQLLVIEPT 250 (464)
T ss_pred HHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHH-HHHHHHHHHHHHHHheeCcc
Confidence 468965 799999999999998432 33322222 24555554 45666666666666666554
No 187
>PRK09848 glucuronide transporter; Provisional
Probab=48.85 E-value=20 Score=35.01 Aligned_cols=75 Identities=9% Similarity=-0.106 Sum_probs=41.1
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCch-hHHHHH-HHhhhcccccccchhhhhhhhhhhHH
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDT-TELLCL-FSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~~-~~~vsl-~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
+++.++++.|+.+.+..++...+-...........+. ++.++. ..+..+ ..+...++-.++|.++||+++|+.+.
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL 298 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 5678899999988776666544322222222222222 233221 112122 23446667778888889888776543
No 188
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=43.36 E-value=88 Score=28.90 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred HHHhhcchhheec--chHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 021110 224 YFLGVGAGVTVLN--NLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLV 299 (317)
Q Consensus 224 ~~~~~g~Gl~~i~--n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~~~~~~~ 299 (317)
+.+...+|..+.. =..++-+.++++.. +.+-..-.++..+| +..|.+.|+++.+. ...+......+|.++
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-----~l~iG~~~~~~GY~~ 82 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-----VLLIGAVLGFVGYGL 82 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-----HHHHHHHHHHHHHHH
Confidence 3344455555443 34556667788643 33444555677777 88899999988643 223333344455555
Q ss_pred HHHhhcc
Q 021110 300 LFEKFQT 306 (317)
Q Consensus 300 ~~~~~~~ 306 (317)
++...+-
T Consensus 83 ~~l~~~~ 89 (250)
T PF06813_consen 83 LWLAVSG 89 (250)
T ss_pred HHHHHhC
Confidence 5444443
No 189
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=42.88 E-value=32 Score=31.89 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=18.5
Q ss_pred hcccccccchhhhhhhhhhhHHH
Q 021110 261 NFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 261 n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+|-+..|.++||++||+.+..
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~ 70 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVI 70 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHH
Confidence 35678899999999999876544
No 190
>PRK09669 putative symporter YagG; Provisional
Probab=42.10 E-value=32 Score=33.64 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=30.1
Q ss_pred hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHH
Q 021110 245 LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLR 286 (317)
Q Consensus 245 l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r-~~~ 286 (317)
+|.+. ..+..++..++.++.=.++|++|||...|.+-.| |++
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il 84 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLL 84 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHH
Confidence 44443 3457778889999999999999999665544444 553
No 191
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=38.53 E-value=88 Score=30.34 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND 249 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~ 249 (317)
.++.++++.||...+.+.+....-..+..-...+.++. |.+.
T Consensus 211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~ 253 (413)
T PRK15403 211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTT 253 (413)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCH
Confidence 46788999999988776654443333333344566654 5553
No 192
>TIGR00901 2A0125 AmpG-related permease.
Probab=36.37 E-value=61 Score=30.20 Aligned_cols=42 Identities=17% Similarity=-0.038 Sum_probs=25.0
Q ss_pred hHHHHHHhCCCchhH-HHHHHHhhhcccccccchhhhhh-----hhhhh
Q 021110 238 LAQIGVALGVNDTTE-LLCLFSLCNFAGRLGSGVLSEHY-----VRSLL 280 (317)
Q Consensus 238 ~~~i~~al~~~~~~~-~vsl~si~n~~GRl~~G~~SD~l-----~r~~~ 280 (317)
+..+.+++|.+...+ ..+...+...+ ++++|.++||+ |||+.
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~ 58 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRS 58 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHH
Confidence 345566777764322 22222333333 88999999998 56554
No 193
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=35.74 E-value=19 Score=36.74 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH--HHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
+++++-+......+|.+.+.+....|.+.-+++....-. +-+|..+..+.=.++++.+-.+|+..+.++-....-+..
T Consensus 374 ~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~ 453 (488)
T KOG2325|consen 374 EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGP 453 (488)
T ss_pred ccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCc
Confidence 367888888889999999999999999999888765533 345665655555677888999999999998888887777
Q ss_pred HH-HHHHHHHHHHHHHHHHHH
Q 021110 282 CS-YLRSIKLGRKCKCFLVLF 301 (317)
Q Consensus 282 ~r-~~~~~~~~~~~~~~~~~~ 301 (317)
.+ |.+...+.+.....++++
T Consensus 454 ~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 454 RPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 77 877777776666666653
No 194
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=34.11 E-value=99 Score=29.71 Aligned_cols=70 Identities=16% Similarity=-0.050 Sum_probs=34.8
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhh
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSL 279 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~r~~ 279 (317)
+.++++.++...+...+..+++.....-.....+ .++.++. ....+..+++..+|-+..|.+.|+.++++
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~ 272 (393)
T PRK11195 200 VLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR 272 (393)
T ss_pred HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4455555554444333333322222222222233 3455432 34556677777777777777777655543
No 195
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=33.51 E-value=1.2e+02 Score=29.77 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhcchhheecchHHHHHHhCCCchh---HHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT---ELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~---~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
+|...|.....+-..-=.+.+ ..+++.|+++.. +++.=+. .+.+-..+.|.+.|++|||+.
T Consensus 38 ~yl~vY~La~~aDWLQGpY~Y---~LY~~yg~~~~qIa~Lf~~Gf~-Ss~i~g~~~G~laD~~Grk~~ 101 (354)
T PF05631_consen 38 KYLLVYLLAMAADWLQGPYLY---ALYESYGFSEHQIAILFVAGFA-SSAIFGTFVGSLADRYGRKKA 101 (354)
T ss_pred HHHHHHHHHHHHHHhhcchhH---HHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchHH
Confidence 555555544333322222333 344556665332 2222221 144444566888999999876
No 196
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=32.64 E-value=96 Score=30.99 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=31.8
Q ss_pred HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++++.++ ..+++++=.+...+-|+.-|++.|++|-|+..
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 5556653 45789999999999999999999999977653
No 197
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=31.79 E-value=1.4e+02 Score=30.66 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcchhheecchHH----HHHHhCCCch---hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 218 WLLWFVYFLGVGAGVTVLNNLAQ----IGVALGVNDT---TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 218 w~l~~~~~~~~g~Gl~~i~n~~~----i~~al~~~~~---~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
|..-..+.|.-|.=-..=.|.+. +.+++|.++. ....+.+...-++.-+.+|+++||++-|+.+..
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l 97 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVL 97 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 54444445544443334444444 3445566543 357788888999999999999999999887665
No 198
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=31.46 E-value=1.2e+02 Score=29.29 Aligned_cols=19 Identities=5% Similarity=0.023 Sum_probs=12.3
Q ss_pred CHHhhhhhhhHHHHHHHHH
Q 021110 207 KLGEAFVKADFWLLWFVYF 225 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~ 225 (317)
++++.++++.||.+.+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (400)
T PRK11646 200 GMTRVLRDKRFVTYVLTLT 218 (400)
T ss_pred HHHHHHcCchHHHHHHHHH
Confidence 3456778888886655443
No 199
>PRK10429 melibiose:sodium symporter; Provisional
Probab=30.04 E-value=61 Score=32.13 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=20.2
Q ss_pred HHHHHHHhhhcccccccchhhhhhh
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~ 276 (317)
....+..++.++.=.++|++|||..
T Consensus 46 ~i~~i~ri~dai~dp~~G~lsD~t~ 70 (473)
T PRK10429 46 TLFLVARIWDAINDPIMGWIVNNTR 70 (473)
T ss_pred HHHHHHHHHHHHhhchheeehhcCC
Confidence 4566777888888899999999663
No 200
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=28.97 E-value=7e+02 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=17.8
Q ss_pred HHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021110 253 LLCLFSLCNFAGRLGSGVLSEHYVRSLLLC 282 (317)
Q Consensus 253 ~vsl~si~n~~GRl~~G~~SD~l~r~~~~~ 282 (317)
.....+.+.++|-++.|.+.-+++ +.+|+
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir-~~Kw~ 382 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIR-HIKWQ 382 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcc-chhHH
Confidence 445566677777778887764443 33333
No 201
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=28.90 E-value=1e+02 Score=30.92 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.1
Q ss_pred HHHH-HhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 240 QIGV-ALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 240 ~i~~-al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
-.+. .+|.++.. ++-...++....|-++.|++.||++-|..
T Consensus 277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v 320 (438)
T COG2270 277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV 320 (438)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence 3344 56776543 45556788889999999999999998844
No 202
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=26.73 E-value=1.6e+02 Score=28.95 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=40.8
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHhCC-CchhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGV-NDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~-~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.++.+|+++++..++..++ .+......++-..+ -+++|. +... ...+.+ .+.+.=+..=.+++++.||.+..+
T Consensus 199 ~~~~llk~~~~~~Fll~~~l-~~~~~~~~~~f~~~yl~~~gg~~~~~-~g~~~~-l~~~aEi~~f~~~~~~~~r~g~~~ 274 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFL-IGISHAAYYTFFSIYLQELGGYSGST-IGILWA-LGVVAEIPFFFFSGRFLKRFGIKW 274 (400)
T ss_pred HHHHHhcCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccchhhH-HHHHHH-HHHHHHHHHHHHHHHHHHhcCHHH
Confidence 44789999999876555444 45455555555554 466773 3221 111222 122344455556677777766444
No 203
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=26.31 E-value=1.4e+02 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.134 Sum_probs=22.4
Q ss_pred cCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcC
Q 021110 3 NFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQ 35 (317)
Q Consensus 3 nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~ 35 (317)
..|+++|.+.|+.-...-+++.+...+.....+
T Consensus 389 ~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 389 LAPRFLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 346777888888777777777777666554444
No 204
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=3e+02 Score=24.63 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=40.9
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHHhheeEeeccCCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHhccccc
Q 021110 31 NMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGH-FVFTQAASVFLAIYVVAISITSDYVS 102 (317)
Q Consensus 31 ~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~~~~~~~~~-f~~~~~~~v~l~~yl~~~~i~~~~~~ 102 (317)
.+||..|...|=+.--++..+++-..|+..+-+-|....|.+++.. +...-+.+....+++.+. +.+.+++
T Consensus 115 taff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~-i~t~~lP 186 (226)
T COG4858 115 TAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVM-IATVFLP 186 (226)
T ss_pred HHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHH-HHHhhCC
Confidence 4578778777766666667777777777776665544333444432 333344445555555555 4455544
No 205
>PF13347 MFS_2: MFS/sugar transport protein
Probab=24.52 E-value=39 Score=32.80 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhcccccccchhhh----hhhhhhh
Q 021110 251 TELLCLFSLCNFAGRLGSGVLSE----HYVRSLL 280 (317)
Q Consensus 251 ~~~vsl~si~n~~GRl~~G~~SD----~l~r~~~ 280 (317)
.+...+-.+++++-=.+.|.+|| |+|||+.
T Consensus 40 g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp 73 (428)
T PF13347_consen 40 GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP 73 (428)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEeeecccccccce
Confidence 34556677899999999999999 5555544
No 206
>PRK11462 putative transporter; Provisional
Probab=23.74 E-value=75 Score=31.55 Aligned_cols=49 Identities=6% Similarity=-0.029 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHH
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLRSIKLGRKCKCFLVLF 301 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r-~~~~~~~~~~~~~~~~~~ 301 (317)
+...+--+|.++-=.+.|++|||...|++-.| |+...++.. +++...+|
T Consensus 49 ~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~-~i~~~llf 98 (460)
T PRK11462 49 TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF-GIVCVLAY 98 (460)
T ss_pred HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH-HHHHHHHH
Confidence 45566778889999999999999877766666 776655544 33344443
No 207
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=23.47 E-value=95 Score=31.50 Aligned_cols=49 Identities=6% Similarity=-0.040 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHH
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLRSIKLGRKCKCFLVL 300 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r-~~~~~~~~~~~~~~~~~ 300 (317)
..-.+.-++.++.=.++|.++||..+|++-.| |++..++....++-+..
T Consensus 52 ~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F 101 (467)
T COG2211 52 TIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF 101 (467)
T ss_pred HHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH
Confidence 34456668888889999999999998888888 88777777655554433
No 208
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=21.55 E-value=6.2e+02 Score=23.04 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=33.8
Q ss_pred chhHHHHHHhhhhHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHhheeEeeccCCCCC
Q 021110 9 GTVSGILKGYAGIAAAIYTVLYNMVLQ----NSATTLLLFLALGIPLICLVTTYFIRACTPASG 68 (317)
Q Consensus 9 G~vvgi~k~~~GLSaaIfs~i~~~ff~----~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~ 68 (317)
++++|......|++ +|...+..+.+ .++..-=+.++ ...++++..+++++.||....
T Consensus 73 ~~~~~~~l~g~a~g--l~~~~~~~~~gr~~~~~~~~~al~la-~~GF~av~lvP~LkyPpnpPa 133 (227)
T PF09490_consen 73 QTLLGNVLFGIAFG--LFALAFAFLRGRLGPLSPRRLALLLA-AAGFVAVFLVPFLKYPPNPPA 133 (227)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhcccCCCChHHHHHHHH-HHHHHHHHHHHcccCCCCCCC
Confidence 45667777777777 44444443432 33333333333 345667888999999986543
No 209
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=21.12 E-value=32 Score=35.38 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=0.0
Q ss_pred chHHHHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021110 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVL 300 (317)
Q Consensus 237 n~~~i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~~~~~~~~ 300 (317)
.+.+|-+-++.++ ..+.++..++=+|-++...+-=++|.|.+.|||+ .+...++++|.++.
T Consensus 25 ~lttiErRF~l~S--~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwi-g~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 25 SLTTIERRFGLSS--SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWI-GIGALLMGLGSLLF 85 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee-eecHHHHHHHHHHH
Confidence 3344444444443 3455566666666666666556788888889988 44445556665554
No 210
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=20.71 E-value=2.3e+02 Score=28.23 Aligned_cols=62 Identities=21% Similarity=0.172 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCch--hHHHHHHHhhhcccccccchhhhhhh
Q 021110 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYV 276 (317)
Q Consensus 213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~l~ 276 (317)
.+..+.++...++ ..|..-....-+..+-+ ++|.+.+ +.++++..+--.+ +.++|.++|++.
T Consensus 24 ~~~~~~~~~~~y~-~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~ 88 (468)
T TIGR00788 24 PRVVLAIGLQVLF-VKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP 88 (468)
T ss_pred cchHHHHHHHHHH-HhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 3344455554443 44444333334444444 5788754 3567777777666 555999999996
No 211
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=20.39 E-value=1.8e+02 Score=28.95 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHc---C---CCchHHHHHHHHHHHHHHHhheeEeeccCC
Q 021110 6 LSRGTVSGILKGYAGIAAAIYTVLYNMVL---Q---NSATTLLLFLALGIPLICLVTTYFIRACTP 65 (317)
Q Consensus 6 ~~RG~vvgi~k~~~GLSaaIfs~i~~~ff---~---~d~~~fllfLa~~~~~v~ll~~~fir~~p~ 65 (317)
+++|++.|+.-++.+||+.+-+.+..... + +|-+.+.+++ +.+.+..++..+++-+.|.
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i-~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI-LGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH-HHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999887775433322 2 3444444433 3334444555666656664
Done!