Query 021110
Match_columns 317
No_of_seqs 203 out of 794
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 97.6 0.00028 9.5E-09 66.4 10.2 75 207-281 250-328 (438)
2 1pw4_A Glycerol-3-phosphate tr 97.2 0.00044 1.5E-08 65.1 6.9 73 208-280 245-322 (451)
3 2cfq_A Lactose permease; trans 95.8 0.0049 1.7E-07 58.3 3.6 74 210-283 2-78 (417)
4 4aps_A DI-OR tripeptide H+ sym 94.1 0.045 1.5E-06 52.1 4.9 67 215-281 13-88 (491)
5 1pw4_A Glycerol-3-phosphate tr 93.9 0.045 1.6E-06 51.1 4.5 66 215-281 28-95 (451)
6 4aps_A DI-OR tripeptide H+ sym 92.4 0.23 7.7E-06 47.2 6.9 81 217-297 285-368 (491)
7 2gfp_A EMRD, multidrug resista 92.3 0.12 4.2E-06 47.1 4.8 48 236-283 21-70 (375)
8 3o7q_A L-fucose-proton symport 92.2 0.22 7.5E-06 46.2 6.5 46 238-283 49-96 (438)
9 2cfq_A Lactose permease; trans 92.0 0.3 1E-05 45.8 7.2 73 208-281 213-292 (417)
10 2xut_A Proton/peptide symporte 90.3 0.14 4.9E-06 49.1 3.1 69 215-283 12-90 (524)
11 2gfp_A EMRD, multidrug resista 87.4 0.13 4.4E-06 47.1 0.4 71 207-277 191-264 (375)
12 4gc0_A D-xylose-proton symport 85.8 1 3.5E-05 42.5 5.8 32 252-283 59-90 (491)
13 4gc0_A D-xylose-proton symport 63.0 14 0.0005 34.3 6.9 70 214-283 275-347 (491)
14 2xut_A Proton/peptide symporte 49.1 27 0.00091 32.9 6.2 33 3-35 433-466 (524)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.58 E-value=0.00028 Score=66.38 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=61.0
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
++++.++++.+|...+..++..+....+......+ .++. |.+. .....++..+++.+||++.|+++||++||+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45678889999999999888888777777777777 6665 6653 35677888999999999999999999988653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.23 E-value=0.00044 Score=65.14 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=57.0
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhh--hhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHY--VRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l--~r~~~ 280 (317)
.++.++++.+|.+.+..++.......+......+.++ +|.+. .....++.++++.+|+++.|+++||+ +||+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 4678899999999988887766655566666666666 56653 35678889999999999999999999 77654
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.82 E-value=0.0049 Score=58.35 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=53.1
Q ss_pred hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
..+|+++||.+...+++...+-.++..-+....+ .+|.++ .....++..++..+|++.+|+++||+|||+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~ 78 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3678999998888665544333333334444333 466653 4578889999999999999999999999987554
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.05 E-value=0.045 Score=52.14 Aligned_cols=67 Identities=6% Similarity=0.004 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHH------hCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLL 281 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a------l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-l~r~~~~ 281 (317)
+.+|.+++..++....-..+...+....+. ++.+. .....++..+++.+|.+.+|+++|| ++||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 357777776655444333343444444433 66653 4568899999999999999999999 8998753
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.92 E-value=0.045 Score=51.11 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~ 281 (317)
..++.+++..++....-.++..-+..+.+++ .+ +.....++..++..++.+.+|+++||++||+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 95 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 95 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence 3444444444333222222223344555555 54 345788999999999999999999999998653
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=92.40 E-value=0.23 Score=47.17 Aligned_cols=81 Identities=11% Similarity=-0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021110 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK 293 (317)
Q Consensus 217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r~~~~~~~~~~ 293 (317)
+|.+++..++....-...........+. .+.+ ......++.++...++..+.|+++||++||+....+.+.+...++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 4444444333333333333444444544 2333 344566777888888899999999999998654433333333333
Q ss_pred HHHH
Q 021110 294 CKCF 297 (317)
Q Consensus 294 ~~~~ 297 (317)
+++.
T Consensus 365 ~~~~ 368 (491)
T 4aps_A 365 GLSF 368 (491)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=92.34 E-value=0.12 Score=47.15 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=38.0
Q ss_pred cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
.-...+.+++|.++ .....++..+.+.++.+..|+++||++||+.+..
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 70 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV 70 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 34555667777764 3468889999999999999999999999987544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.24 E-value=0.22 Score=46.24 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.1
Q ss_pred hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
...+.++++.++ ..+..++..++..++.+.+|.++||++||+.+..
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~ 96 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence 445667778764 3568889999999999999999999999976444
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.99 E-value=0.3 Score=45.79 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=44.5
Q ss_pred HHhhhhhhhHHHHHHHHHHhhcchhhee-cchHHHHHHh-CCC---c--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021110 208 LGEAFVKADFWLLWFVYFLGVGAGVTVL-NNLAQIGVAL-GVN---D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL 280 (317)
Q Consensus 208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i-~n~~~i~~al-~~~---~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~ 280 (317)
.++.++++++|.+++..++.. .+.... .......+.. +.. . .....++..+++.+|++..|+++||++||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 457788999998776544332 222211 2223333332 211 1 1345667778899999999999999998875
Q ss_pred H
Q 021110 281 L 281 (317)
Q Consensus 281 ~ 281 (317)
+
T Consensus 292 l 292 (417)
T 2cfq_A 292 L 292 (417)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=90.27 E-value=0.14 Score=49.09 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhhcchhheecchHH-HHHHhC------CCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHHH
Q 021110 215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALG------VND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLCS 283 (317)
Q Consensus 215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~------~~~--~~~~vsl~si~n~~GRl~~G~~SD~l-~r~~~~~r 283 (317)
+.+|.+++..++...+-.++...+.. +.+.++ .+. .....++..++..+|.+.+|+++||+ +||+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 35676666555544443333344443 345567 553 45688899999999999999999999 99876433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=87.42 E-value=0.13 Score=47.05 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=50.2
Q ss_pred CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021110 207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR 277 (317)
Q Consensus 207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r 277 (317)
+.++.++++.+|.+++..++.......+......+.++ +|.++ .....++.+++..+|++..|.++||.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 191 SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888777655544444444444443 44432 3456777888899999999999998877
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=85.79 E-value=1 Score=42.49 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=27.4
Q ss_pred HHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 252 ~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
+.++...++..+|-+++|+++||+|||+.+..
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 46777888999999999999999999987544
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=63.05 E-value=14 Score=34.33 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhhcchhheec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021110 214 KADFWLLWFVYFLGVGAGVTVLN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS 283 (317)
Q Consensus 214 t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~l~r~~~~~r 283 (317)
....+.......+....|...+. ....+.+..+... ......+.++.+..+-++.+++.||++||+....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 275 VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 33344433333333444443333 3344555555543 2345567788889999999999999999976443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=49.15 E-value=27 Score=32.89 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred cCC-CCCchhHHHHHHhhhhHHHHHHHHHHHHcC
Q 021110 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQ 35 (317)
Q Consensus 3 nFP-~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~ 35 (317)
.+| +.||++.|+.-...++++.+-..+.....+
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467 569999999999999999998888776554
Done!