Query 021114
Match_columns 317
No_of_seqs 388 out of 2069
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05225 ketol-acid reductoiso 100.0 2.8E-43 6.1E-48 348.9 16.6 219 71-313 1-228 (487)
2 COG0059 IlvC Ketol-acid reduct 100.0 5.5E-41 1.2E-45 316.8 17.3 188 106-313 14-204 (338)
3 PRK13403 ketol-acid reductoiso 100.0 6.8E-39 1.5E-43 307.5 18.1 189 104-313 10-201 (335)
4 PRK05479 ketol-acid reductoiso 100.0 5.1E-36 1.1E-40 289.2 19.3 191 104-314 11-204 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 6.6E-34 1.4E-38 273.1 19.3 186 108-313 1-189 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 2.8E-32 6.1E-37 238.8 14.3 161 108-288 2-163 (165)
7 PRK12491 pyrroline-5-carboxyla 99.9 1.9E-21 4.1E-26 183.3 15.8 166 112-312 3-174 (272)
8 COG0287 TyrA Prephenate dehydr 99.9 1E-20 2.2E-25 179.4 16.5 169 112-298 4-175 (279)
9 COG0345 ProC Pyrroline-5-carbo 99.9 1.1E-20 2.3E-25 178.0 15.4 166 111-312 1-171 (266)
10 PRK07417 arogenate dehydrogena 99.8 1.2E-19 2.6E-24 170.6 14.9 170 112-297 1-170 (279)
11 PRK06545 prephenate dehydrogen 99.8 3.9E-19 8.4E-24 173.2 17.0 175 112-297 1-177 (359)
12 PRK06928 pyrroline-5-carboxyla 99.8 7.6E-19 1.6E-23 165.5 14.8 167 111-312 1-174 (277)
13 PLN02256 arogenate dehydrogena 99.8 1.6E-18 3.4E-23 166.1 17.0 166 109-299 35-209 (304)
14 PRK07679 pyrroline-5-carboxyla 99.8 1.5E-18 3.3E-23 163.0 16.5 152 112-289 4-161 (279)
15 PLN02688 pyrroline-5-carboxyla 99.8 2.5E-18 5.5E-23 159.4 17.0 166 112-312 1-171 (266)
16 PTZ00431 pyrroline carboxylate 99.8 2.4E-18 5.3E-23 160.5 14.2 163 112-315 4-171 (260)
17 PRK08507 prephenate dehydrogen 99.8 6.4E-18 1.4E-22 158.3 16.4 163 112-297 1-171 (275)
18 PRK08818 prephenate dehydrogen 99.8 5.3E-18 1.2E-22 166.5 14.3 151 112-298 5-159 (370)
19 PRK07502 cyclohexadienyl dehyd 99.8 3.1E-17 6.7E-22 156.0 17.1 174 112-297 7-182 (307)
20 PRK11880 pyrroline-5-carboxyla 99.7 3.3E-17 7.1E-22 152.1 16.2 166 111-311 2-171 (267)
21 PF02153 PDH: Prephenate dehyd 99.7 1.1E-17 2.3E-22 156.3 12.7 160 126-298 1-162 (258)
22 PRK07634 pyrroline-5-carboxyla 99.7 7.6E-17 1.6E-21 147.5 16.0 153 112-290 5-162 (245)
23 PRK08655 prephenate dehydrogen 99.7 7.1E-17 1.5E-21 161.5 16.9 162 112-297 1-166 (437)
24 PRK07680 late competence prote 99.7 1.3E-16 2.9E-21 149.3 13.9 163 112-311 1-170 (273)
25 PLN02712 arogenate dehydrogena 99.7 5.2E-16 1.1E-20 162.6 16.4 173 105-298 364-541 (667)
26 PLN02712 arogenate dehydrogena 99.7 2.6E-15 5.6E-20 157.4 16.9 163 112-299 53-225 (667)
27 PRK11199 tyrA bifunctional cho 99.6 3.9E-15 8.5E-20 146.2 14.9 149 110-298 97-246 (374)
28 PRK06476 pyrroline-5-carboxyla 99.6 3.1E-15 6.7E-20 138.8 13.2 143 112-289 1-148 (258)
29 PRK14806 bifunctional cyclohex 99.6 8.9E-15 1.9E-19 154.0 17.7 164 112-297 4-180 (735)
30 COG0111 SerA Phosphoglycerate 99.6 3.6E-15 7.8E-20 144.3 12.3 157 85-267 117-283 (324)
31 COG1052 LdhA Lactate dehydroge 99.6 1.2E-14 2.5E-19 140.7 13.0 168 85-276 117-299 (324)
32 PF02826 2-Hacid_dh_C: D-isome 99.6 2.5E-15 5.4E-20 132.9 6.1 156 86-267 11-177 (178)
33 PRK05808 3-hydroxybutyryl-CoA 99.6 7.2E-14 1.6E-18 131.3 15.2 155 111-290 3-180 (282)
34 PRK06130 3-hydroxybutyryl-CoA 99.6 9.5E-14 2.1E-18 131.9 16.2 155 111-289 4-176 (311)
35 PRK08410 2-hydroxyacid dehydro 99.6 2.5E-14 5.4E-19 137.4 11.4 164 86-277 115-295 (311)
36 PRK15409 bifunctional glyoxyla 99.5 4.4E-14 9.6E-19 136.5 12.7 164 85-275 117-295 (323)
37 PF03446 NAD_binding_2: NAD bi 99.5 5E-14 1.1E-18 122.7 11.7 152 111-287 1-156 (163)
38 PRK06932 glycerate dehydrogena 99.5 4.8E-14 1E-18 135.7 12.3 168 85-279 116-300 (314)
39 PRK13243 glyoxylate reductase; 99.5 5.2E-14 1.1E-18 136.4 11.8 156 85-268 118-290 (333)
40 PRK06436 glycerate dehydrogena 99.5 5.8E-14 1.3E-18 134.7 11.7 157 86-276 100-267 (303)
41 PLN02545 3-hydroxybutyryl-CoA 99.5 2.5E-13 5.3E-18 128.5 15.9 156 111-290 4-181 (295)
42 PRK07574 formate dehydrogenase 99.5 1.6E-13 3.5E-18 135.7 14.7 167 85-276 165-344 (385)
43 PLN03139 formate dehydrogenase 99.5 2.9E-13 6.3E-18 133.8 14.3 166 85-275 172-350 (386)
44 COG2084 MmsB 3-hydroxyisobutyr 99.5 3.4E-13 7.3E-18 128.5 13.9 149 112-287 1-157 (286)
45 KOG3124 Pyrroline-5-carboxylat 99.5 2E-13 4.3E-18 127.5 12.0 166 112-312 1-172 (267)
46 PLN02928 oxidoreductase family 99.5 3E-13 6.6E-18 131.9 12.1 171 86-277 137-323 (347)
47 PRK06487 glycerate dehydrogena 99.5 2.6E-13 5.7E-18 130.7 11.5 162 86-277 118-296 (317)
48 TIGR00112 proC pyrroline-5-car 99.5 7.4E-13 1.6E-17 122.9 12.9 143 141-311 10-153 (245)
49 PRK07531 bifunctional 3-hydrox 99.5 1.7E-12 3.6E-17 131.9 16.5 152 111-290 4-178 (495)
50 PRK12480 D-lactate dehydrogena 99.5 8.6E-13 1.9E-17 127.9 13.5 156 86-267 121-297 (330)
51 PRK11790 D-3-phosphoglycerate 99.5 3.5E-13 7.6E-18 134.1 11.0 157 85-267 126-293 (409)
52 PRK15469 ghrA bifunctional gly 99.4 6.3E-13 1.4E-17 128.0 12.0 155 86-268 114-277 (312)
53 PRK08293 3-hydroxybutyryl-CoA 99.4 4.2E-12 9.2E-17 119.9 17.1 155 111-289 3-181 (287)
54 PRK09260 3-hydroxybutyryl-CoA 99.4 3.9E-12 8.4E-17 120.0 16.8 156 111-290 1-179 (288)
55 TIGR01327 PGDH D-3-phosphoglyc 99.4 6.1E-13 1.3E-17 136.1 12.2 156 86-268 114-279 (525)
56 PF03807 F420_oxidored: NADP o 99.4 4.1E-13 8.8E-18 106.1 8.1 89 113-211 1-93 (96)
57 TIGR01915 npdG NADPH-dependent 99.4 2.6E-12 5.6E-17 117.0 14.3 158 112-289 1-185 (219)
58 PRK13581 D-3-phosphoglycerate 99.4 8.8E-13 1.9E-17 135.0 11.6 154 86-267 116-279 (526)
59 PRK06035 3-hydroxyacyl-CoA deh 99.4 8.7E-12 1.9E-16 117.8 16.6 155 111-290 3-183 (291)
60 KOG0069 Glyoxylate/hydroxypyru 99.4 4.3E-12 9.4E-17 123.1 14.3 166 85-277 135-313 (336)
61 PRK15059 tartronate semialdehy 99.4 1E-11 2.2E-16 118.2 15.0 153 112-290 1-158 (292)
62 PRK07530 3-hydroxybutyryl-CoA 99.4 2.7E-11 5.9E-16 114.4 17.2 155 111-290 4-181 (292)
63 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.4E-11 3E-16 117.2 14.8 147 112-286 1-153 (298)
64 PRK08605 D-lactate dehydrogena 99.4 7.2E-12 1.6E-16 121.4 12.8 135 86-237 121-267 (332)
65 PRK06444 prephenate dehydrogen 99.3 1.6E-11 3.5E-16 111.3 13.7 122 112-298 1-125 (197)
66 PRK06129 3-hydroxyacyl-CoA deh 99.3 4E-11 8.7E-16 114.4 17.0 155 111-289 2-179 (308)
67 KOG0068 D-3-phosphoglycerate d 99.3 8.2E-12 1.8E-16 120.6 12.2 175 87-286 123-313 (406)
68 PRK12490 6-phosphogluconate de 99.3 2.2E-11 4.7E-16 115.9 14.5 147 112-286 1-154 (299)
69 PLN02306 hydroxypyruvate reduc 99.3 9E-12 2E-16 123.3 12.3 170 85-275 137-330 (386)
70 PF10727 Rossmann-like: Rossma 99.3 3.1E-12 6.7E-17 108.6 7.4 114 112-237 11-127 (127)
71 TIGR01505 tartro_sem_red 2-hyd 99.3 2E-11 4.3E-16 115.1 13.4 149 113-289 1-157 (291)
72 PRK00094 gpsA NAD(P)H-dependen 99.3 2.6E-11 5.7E-16 114.8 13.3 150 111-287 1-173 (325)
73 COG2085 Predicted dinucleotide 99.3 4.6E-11 1E-15 109.1 14.2 157 111-289 1-176 (211)
74 PRK07066 3-hydroxybutyryl-CoA 99.3 7.6E-11 1.7E-15 114.2 16.5 156 111-290 7-181 (321)
75 PLN02350 phosphogluconate dehy 99.3 4.7E-11 1E-15 121.6 13.2 152 112-287 7-168 (493)
76 PRK15461 NADH-dependent gamma- 99.3 1E-10 2.2E-15 111.3 14.6 153 111-290 1-160 (296)
77 PRK09599 6-phosphogluconate de 99.3 8E-11 1.7E-15 112.0 13.9 147 112-286 1-154 (301)
78 PRK11559 garR tartronate semia 99.2 1.8E-10 3.9E-15 108.7 15.3 150 112-289 3-160 (296)
79 TIGR01692 HIBADH 3-hydroxyisob 99.2 1.3E-10 2.8E-15 109.8 13.9 150 116-290 1-155 (288)
80 PRK08268 3-hydroxy-acyl-CoA de 99.2 3.9E-10 8.3E-15 115.2 17.1 152 110-290 6-184 (507)
81 PTZ00142 6-phosphogluconate de 99.2 2.2E-10 4.7E-15 116.2 15.0 150 111-287 1-162 (470)
82 TIGR01724 hmd_rel H2-forming N 99.2 3E-10 6.5E-15 109.8 14.1 147 123-287 32-188 (341)
83 TIGR00873 gnd 6-phosphoglucona 99.2 1.9E-10 4.2E-15 116.4 13.3 147 113-287 1-159 (467)
84 PRK07819 3-hydroxybutyryl-CoA 99.2 1.1E-09 2.3E-14 104.2 16.7 155 111-290 5-184 (286)
85 PRK14618 NAD(P)H-dependent gly 99.2 2.2E-10 4.8E-15 109.9 11.4 158 112-304 5-181 (328)
86 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.1 1.1E-09 2.3E-14 112.0 16.2 155 111-290 5-182 (503)
87 PRK11861 bifunctional prephena 99.1 1.8E-10 3.9E-15 121.1 9.7 114 182-298 1-115 (673)
88 PRK00257 erythronate-4-phospha 99.1 2.4E-10 5.3E-15 113.0 9.7 151 106-287 112-281 (381)
89 KOG0409 Predicted dehydrogenas 99.1 1.1E-09 2.4E-14 104.7 13.2 150 112-290 36-195 (327)
90 PRK12557 H(2)-dependent methyl 99.1 2.1E-09 4.5E-14 105.0 15.4 145 123-294 32-194 (342)
91 PRK14619 NAD(P)H-dependent gly 99.1 3.3E-09 7.1E-14 101.3 15.7 79 109-212 3-82 (308)
92 PRK15438 erythronate-4-phospha 99.1 2.4E-10 5.2E-15 113.0 8.1 150 106-286 112-280 (378)
93 TIGR03026 NDP-sugDHase nucleot 99.1 2.1E-09 4.6E-14 106.5 14.4 161 112-295 1-202 (411)
94 PRK12439 NAD(P)H-dependent gly 99.1 1.9E-09 4E-14 104.7 13.7 163 112-306 8-189 (341)
95 PF02737 3HCDH_N: 3-hydroxyacy 99.1 5.5E-09 1.2E-13 93.0 15.2 152 113-289 1-175 (180)
96 KOG2380 Prephenate dehydrogena 99.1 2.6E-09 5.6E-14 103.8 13.8 164 112-299 53-225 (480)
97 PLN02858 fructose-bisphosphate 99.0 3.1E-09 6.7E-14 119.5 14.3 153 112-289 325-484 (1378)
98 PLN02858 fructose-bisphosphate 99.0 4.1E-09 8.9E-14 118.5 14.9 153 112-289 5-164 (1378)
99 PRK11064 wecC UDP-N-acetyl-D-m 99.0 1.1E-08 2.4E-13 102.1 15.5 163 111-295 3-206 (415)
100 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 3.4E-09 7.4E-14 92.0 8.7 95 113-214 1-106 (157)
101 PRK12921 2-dehydropantoate 2-r 98.9 3.9E-08 8.5E-13 92.5 15.1 161 112-294 1-178 (305)
102 PRK08229 2-dehydropantoate 2-r 98.9 2.7E-08 5.8E-13 95.4 13.6 161 111-298 2-182 (341)
103 PRK06522 2-dehydropantoate 2-r 98.9 6.2E-08 1.3E-12 90.8 15.0 156 112-290 1-171 (304)
104 TIGR02853 spore_dpaA dipicolin 98.8 1.4E-08 3.1E-13 96.8 9.0 116 86-214 125-242 (287)
105 cd01065 NAD_bind_Shikimate_DH 98.8 5.8E-09 1.3E-13 88.6 5.2 121 107-239 16-142 (155)
106 COG1250 FadB 3-hydroxyacyl-CoA 98.8 1.7E-07 3.6E-12 90.5 14.5 153 111-287 3-177 (307)
107 PRK11730 fadB multifunctional 98.8 1.9E-07 4E-12 99.3 15.9 157 109-290 311-490 (715)
108 PF00670 AdoHcyase_NAD: S-aden 98.8 2.8E-08 6E-13 87.8 8.0 94 106-215 19-113 (162)
109 TIGR02437 FadB fatty oxidation 98.7 2.3E-07 4.9E-12 98.6 16.2 157 109-290 311-490 (714)
110 TIGR02440 FadJ fatty oxidation 98.7 2.7E-07 5.8E-12 97.9 16.4 156 110-290 303-482 (699)
111 TIGR02441 fa_ox_alpha_mit fatt 98.7 2.1E-07 4.6E-12 99.2 14.7 156 110-290 334-512 (737)
112 PRK14620 NAD(P)H-dependent gly 98.7 2E-07 4.3E-12 89.4 13.1 96 112-214 1-109 (326)
113 COG1023 Gnd Predicted 6-phosph 98.7 2.3E-07 4.9E-12 86.8 12.8 146 112-286 1-154 (300)
114 PTZ00075 Adenosylhomocysteinas 98.7 6.4E-08 1.4E-12 98.2 10.0 93 106-214 250-343 (476)
115 PRK11154 fadJ multifunctional 98.7 4.2E-07 9.2E-12 96.5 16.5 156 110-290 308-487 (708)
116 PRK06249 2-dehydropantoate 2-r 98.7 9.3E-07 2E-11 84.6 16.4 169 112-303 6-196 (313)
117 PRK15182 Vi polysaccharide bio 98.6 7.5E-07 1.6E-11 89.4 15.6 94 112-214 7-122 (425)
118 cd00401 AdoHcyase S-adenosyl-L 98.6 1E-06 2.2E-11 88.3 14.1 93 106-214 198-291 (413)
119 PRK09287 6-phosphogluconate de 98.6 6.1E-07 1.3E-11 91.0 12.2 139 122-287 1-150 (459)
120 COG0240 GpsA Glycerol-3-phosph 98.5 6.9E-07 1.5E-11 86.8 11.7 164 112-306 2-183 (329)
121 PRK08306 dipicolinate synthase 98.5 4.6E-07 9.9E-12 86.8 10.0 95 106-213 148-242 (296)
122 PRK14194 bifunctional 5,10-met 98.5 3.1E-07 6.7E-12 88.5 8.2 76 106-212 155-231 (301)
123 TIGR00936 ahcY adenosylhomocys 98.5 8.7E-07 1.9E-11 88.6 11.0 92 107-214 192-284 (406)
124 TIGR03376 glycerol3P_DH glycer 98.5 7.3E-07 1.6E-11 87.3 10.2 98 113-216 1-121 (342)
125 PTZ00345 glycerol-3-phosphate 98.5 6.4E-07 1.4E-11 88.4 9.2 104 112-215 12-133 (365)
126 PRK15057 UDP-glucose 6-dehydro 98.4 3.2E-06 6.9E-11 84.0 13.8 93 112-215 1-120 (388)
127 PRK05476 S-adenosyl-L-homocyst 98.4 1E-06 2.2E-11 88.6 10.4 93 107-215 209-302 (425)
128 PLN02494 adenosylhomocysteinas 98.4 1.2E-06 2.6E-11 89.0 10.5 92 107-214 251-343 (477)
129 COG0362 Gnd 6-phosphogluconate 98.4 2.9E-06 6.3E-11 84.2 10.9 148 112-287 4-163 (473)
130 PLN02353 probable UDP-glucose 98.3 7.8E-06 1.7E-10 83.3 13.9 170 111-295 1-210 (473)
131 PF03721 UDPG_MGDP_dh_N: UDP-g 98.3 2.4E-06 5.2E-11 76.6 8.9 95 112-214 1-122 (185)
132 PRK13302 putative L-aspartate 98.3 3E-06 6.5E-11 80.2 9.8 92 112-213 7-100 (271)
133 PRK13304 L-aspartate dehydroge 98.3 3.5E-06 7.6E-11 79.3 10.2 82 111-200 1-83 (265)
134 PRK14188 bifunctional 5,10-met 98.3 1.9E-06 4E-11 83.0 8.1 76 107-213 155-231 (296)
135 COG1893 ApbA Ketopantoate redu 98.3 1.7E-05 3.7E-10 76.5 13.8 173 112-305 1-188 (307)
136 cd05213 NAD_bind_Glutamyl_tRNA 98.2 4.9E-06 1.1E-10 80.0 9.3 97 107-212 175-273 (311)
137 PRK05708 2-dehydropantoate 2-r 98.2 1.8E-05 3.8E-10 75.8 12.0 156 112-290 3-173 (305)
138 smart00859 Semialdhyde_dh Semi 98.2 6.6E-06 1.4E-10 67.9 7.7 95 113-214 1-101 (122)
139 PRK14179 bifunctional 5,10-met 98.2 4.8E-06 1E-10 79.7 7.7 76 106-212 154-230 (284)
140 PRK08269 3-hydroxybutyryl-CoA 98.2 7.4E-05 1.6E-09 72.2 15.9 145 122-289 1-176 (314)
141 PF01408 GFO_IDH_MocA: Oxidore 98.1 2.1E-05 4.5E-10 63.9 8.9 82 112-201 1-85 (120)
142 PF02558 ApbA: Ketopantoate re 98.1 2E-05 4.3E-10 66.8 9.2 100 114-221 1-112 (151)
143 cd01075 NAD_bind_Leu_Phe_Val_D 98.0 1E-05 2.2E-10 73.4 6.8 72 105-189 23-96 (200)
144 PF01488 Shikimate_DH: Shikima 98.0 5.9E-06 1.3E-10 70.1 4.9 97 106-212 8-109 (135)
145 COG0677 WecC UDP-N-acetyl-D-ma 98.0 0.00011 2.4E-09 73.2 13.7 159 112-294 10-208 (436)
146 COG4007 Predicted dehydrogenas 98.0 7.8E-05 1.7E-09 70.7 11.5 146 123-287 33-189 (340)
147 PRK00045 hemA glutamyl-tRNA re 97.9 1.9E-05 4.2E-10 79.0 7.1 98 107-213 179-281 (423)
148 PRK06141 ornithine cyclodeamin 97.9 2.4E-05 5.2E-10 75.4 7.0 87 112-212 126-219 (314)
149 COG0499 SAM1 S-adenosylhomocys 97.9 2.9E-05 6.2E-10 76.4 6.7 93 106-214 205-298 (420)
150 TIGR01035 hemA glutamyl-tRNA r 97.8 6.6E-05 1.4E-09 75.2 9.0 98 106-212 176-277 (417)
151 TIGR00518 alaDH alanine dehydr 97.8 4E-05 8.6E-10 75.7 7.2 97 108-212 165-267 (370)
152 TIGR02371 ala_DH_arch alanine 97.8 5E-05 1.1E-09 73.6 7.8 94 112-215 129-225 (325)
153 KOG2304 3-hydroxyacyl-CoA dehy 97.8 8.2E-05 1.8E-09 69.5 8.7 155 111-289 11-193 (298)
154 PRK14189 bifunctional 5,10-met 97.8 4.9E-05 1.1E-09 72.9 7.0 76 106-212 154-230 (285)
155 PRK00048 dihydrodipicolinate r 97.7 0.00017 3.7E-09 67.6 9.8 160 112-286 2-171 (257)
156 cd01080 NAD_bind_m-THF_DH_Cycl 97.7 9.2E-05 2E-09 65.7 7.4 76 106-212 40-116 (168)
157 PLN00203 glutamyl-tRNA reducta 97.7 0.00014 3.1E-09 75.0 9.5 99 107-212 263-369 (519)
158 PRK14175 bifunctional 5,10-met 97.7 0.00013 2.7E-09 70.1 8.1 77 106-213 154-231 (286)
159 KOG1370 S-adenosylhomocysteine 97.7 0.00016 3.4E-09 70.2 8.5 126 72-215 179-304 (434)
160 PRK13303 L-aspartate dehydroge 97.7 0.00033 7.2E-09 66.0 10.5 81 111-200 1-83 (265)
161 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00012 2.6E-09 65.1 6.5 99 106-213 24-130 (194)
162 PF01118 Semialdhyde_dh: Semia 97.6 0.00016 3.6E-09 59.9 6.7 92 113-214 1-99 (121)
163 PRK07340 ornithine cyclodeamin 97.6 0.00013 2.9E-09 70.1 6.9 93 109-215 124-220 (304)
164 COG0373 HemA Glutamyl-tRNA red 97.5 0.00035 7.7E-09 70.2 8.6 97 106-212 174-274 (414)
165 PRK08618 ornithine cyclodeamin 97.5 0.0003 6.5E-09 68.1 7.8 92 112-215 128-224 (325)
166 TIGR00036 dapB dihydrodipicoli 97.5 0.0012 2.6E-08 62.3 11.3 161 112-286 2-181 (266)
167 TIGR01921 DAP-DH diaminopimela 97.5 0.00042 9.1E-09 67.6 8.3 75 112-196 4-78 (324)
168 PRK04207 glyceraldehyde-3-phos 97.4 0.0011 2.4E-08 64.9 11.0 96 111-214 1-111 (341)
169 PF01113 DapB_N: Dihydrodipico 97.4 0.00038 8.2E-09 58.3 6.7 93 112-216 1-103 (124)
170 PRK06223 malate dehydrogenase; 97.4 0.0012 2.7E-08 62.8 10.8 69 111-186 2-78 (307)
171 PRK14192 bifunctional 5,10-met 97.4 0.00044 9.4E-09 66.2 7.7 76 106-212 155-231 (283)
172 PRK10792 bifunctional 5,10-met 97.4 0.00056 1.2E-08 65.7 8.4 76 106-212 155-231 (285)
173 PRK13940 glutamyl-tRNA reducta 97.4 0.00027 5.8E-09 71.0 6.4 76 106-190 177-254 (414)
174 PRK07589 ornithine cyclodeamin 97.4 0.00039 8.5E-09 68.3 7.2 95 112-215 130-228 (346)
175 TIGR02992 ectoine_eutC ectoine 97.4 0.0004 8.6E-09 67.3 7.1 90 112-213 130-225 (326)
176 PRK06407 ornithine cyclodeamin 97.4 0.00038 8.3E-09 67.0 6.9 93 112-215 118-215 (301)
177 TIGR00507 aroE shikimate 5-deh 97.3 0.00034 7.5E-09 65.7 6.0 94 108-212 115-214 (270)
178 COG1712 Predicted dinucleotide 97.3 0.0011 2.4E-08 61.9 9.1 82 112-201 1-83 (255)
179 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0019 4.1E-08 62.0 11.0 91 112-213 2-96 (285)
180 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.001 2.2E-08 58.8 8.4 78 106-214 32-110 (160)
181 PRK06046 alanine dehydrogenase 97.3 0.00063 1.4E-08 65.9 7.7 92 112-215 130-226 (326)
182 PRK00258 aroE shikimate 5-dehy 97.3 0.00032 7E-09 66.3 5.5 98 106-211 119-220 (278)
183 TIGR01763 MalateDH_bact malate 97.3 0.0017 3.7E-08 62.5 10.3 66 112-187 2-78 (305)
184 TIGR00745 apbA_panE 2-dehydrop 97.3 0.0071 1.5E-07 56.3 14.3 153 121-297 1-171 (293)
185 cd05212 NAD_bind_m-THF_DH_Cycl 97.3 0.00086 1.9E-08 57.9 7.4 76 106-212 24-100 (140)
186 COG2423 Predicted ornithine cy 97.3 0.00094 2E-08 65.4 8.5 94 111-214 130-227 (330)
187 PRK08300 acetaldehyde dehydrog 97.3 0.0022 4.7E-08 62.1 10.5 91 112-213 5-102 (302)
188 TIGR00561 pntA NAD(P) transhyd 97.3 0.001 2.2E-08 68.7 8.7 97 108-212 162-284 (511)
189 KOG2653 6-phosphogluconate deh 97.3 0.0012 2.7E-08 65.2 8.7 146 112-285 7-164 (487)
190 cd05311 NAD_bind_2_malic_enz N 97.3 0.0017 3.7E-08 60.0 9.4 94 106-212 21-128 (226)
191 COG0673 MviM Predicted dehydro 97.2 0.0011 2.4E-08 63.0 8.1 77 112-197 4-86 (342)
192 cd05191 NAD_bind_amino_acid_DH 97.2 0.0018 3.9E-08 50.6 7.9 66 106-211 19-85 (86)
193 PRK00436 argC N-acetyl-gamma-g 97.2 0.0018 3.9E-08 63.3 9.6 96 111-214 2-101 (343)
194 PRK06718 precorrin-2 dehydroge 97.2 0.0019 4.2E-08 58.7 8.9 86 105-199 5-91 (202)
195 KOG2711 Glycerol-3-phosphate d 97.2 0.0055 1.2E-07 60.2 12.3 104 112-215 22-143 (372)
196 PF02254 TrkA_N: TrkA-N domain 97.2 0.0041 8.9E-08 50.2 9.7 93 114-213 1-98 (116)
197 PRK06823 ornithine cyclodeamin 97.2 0.001 2.2E-08 64.5 7.2 93 112-215 129-225 (315)
198 PRK13301 putative L-aspartate 97.2 0.0026 5.6E-08 60.6 9.6 81 112-200 3-84 (267)
199 PRK08291 ectoine utilization p 97.1 0.0012 2.6E-08 64.1 7.2 91 112-213 133-228 (330)
200 PRK09310 aroDE bifunctional 3- 97.1 0.0011 2.5E-08 67.5 7.4 75 106-190 328-402 (477)
201 PRK14191 bifunctional 5,10-met 97.1 0.0013 2.8E-08 63.2 7.2 76 106-212 153-229 (285)
202 PF02423 OCD_Mu_crystall: Orni 97.1 0.00041 8.9E-09 67.0 3.7 94 112-214 129-226 (313)
203 COG0686 Ald Alanine dehydrogen 97.1 0.0012 2.6E-08 64.3 6.6 133 72-212 130-268 (371)
204 COG5495 Uncharacterized conser 97.1 0.0043 9.3E-08 58.3 9.9 151 112-290 11-167 (289)
205 PTZ00117 malate dehydrogenase; 97.1 0.0041 9E-08 60.2 10.3 71 108-186 3-81 (319)
206 cd05291 HicDH_like L-2-hydroxy 97.0 0.0039 8.4E-08 59.8 9.8 69 112-188 1-78 (306)
207 PRK00961 H(2)-dependent methyl 97.0 0.0032 6.9E-08 60.4 8.9 107 159-287 126-237 (342)
208 KOG2305 3-hydroxyacyl-CoA dehy 97.0 0.0036 7.8E-08 58.8 8.8 155 112-289 4-181 (313)
209 PRK14176 bifunctional 5,10-met 97.0 0.0026 5.7E-08 61.2 8.2 77 106-213 160-237 (287)
210 TIGR01850 argC N-acetyl-gamma- 97.0 0.004 8.6E-08 61.0 9.6 93 112-214 1-101 (346)
211 cd05292 LDH_2 A subgroup of L- 97.0 0.0045 9.7E-08 59.6 9.6 70 112-188 1-77 (308)
212 PRK14178 bifunctional 5,10-met 97.0 0.0022 4.7E-08 61.5 7.3 76 106-212 148-224 (279)
213 TIGR01723 hmd_TIGR 5,10-methen 97.0 0.0052 1.1E-07 59.1 9.8 108 159-287 124-235 (340)
214 PRK09496 trkA potassium transp 97.0 0.0052 1.1E-07 61.0 10.3 79 112-197 1-84 (453)
215 COG1748 LYS9 Saccharopine dehy 97.0 0.0031 6.7E-08 63.0 8.6 79 111-196 1-86 (389)
216 PRK12549 shikimate 5-dehydroge 97.0 0.002 4.3E-08 61.5 6.9 77 106-190 123-204 (284)
217 PRK14183 bifunctional 5,10-met 96.9 0.0028 6E-08 60.8 7.6 76 106-212 153-229 (281)
218 COG0569 TrkA K+ transport syst 96.9 0.0061 1.3E-07 56.2 9.6 81 112-199 1-87 (225)
219 cd01079 NAD_bind_m-THF_DH NAD 96.9 0.0028 6E-08 57.9 7.2 95 106-214 58-158 (197)
220 PRK09424 pntA NAD(P) transhydr 96.9 0.0043 9.3E-08 64.1 8.8 97 108-212 163-285 (509)
221 PRK14982 acyl-ACP reductase; P 96.8 0.0027 5.9E-08 62.4 7.0 164 106-288 151-336 (340)
222 PRK14173 bifunctional 5,10-met 96.8 0.0037 8E-08 60.2 7.7 77 106-213 151-228 (287)
223 PRK06199 ornithine cyclodeamin 96.8 0.0022 4.8E-08 63.7 6.5 97 110-213 154-260 (379)
224 PRK14186 bifunctional 5,10-met 96.8 0.0037 8.1E-08 60.4 7.8 77 106-213 154-231 (297)
225 PF00056 Ldh_1_N: lactate/mala 96.8 0.0052 1.1E-07 52.7 7.7 67 112-186 1-77 (141)
226 COG1004 Ugd Predicted UDP-gluc 96.8 0.0056 1.2E-07 61.3 8.9 94 112-212 1-120 (414)
227 PF01262 AlaDh_PNT_C: Alanine 96.8 0.0013 2.9E-08 57.5 4.1 100 105-212 15-139 (168)
228 PRK11579 putative oxidoreducta 96.8 0.0064 1.4E-07 58.9 9.2 78 112-200 5-86 (346)
229 PRK14177 bifunctional 5,10-met 96.8 0.0044 9.6E-08 59.5 7.8 76 106-212 155-231 (284)
230 PRK14172 bifunctional 5,10-met 96.8 0.0045 9.7E-08 59.3 7.7 76 106-212 154-230 (278)
231 PF13241 NAD_binding_7: Putati 96.8 0.0084 1.8E-07 48.5 8.2 77 106-197 3-79 (103)
232 COG0190 FolD 5,10-methylene-te 96.8 0.0041 9E-08 59.6 7.4 78 106-214 152-230 (283)
233 PRK14169 bifunctional 5,10-met 96.8 0.0046 9.9E-08 59.4 7.7 77 106-213 152-229 (282)
234 PRK06719 precorrin-2 dehydroge 96.7 0.0056 1.2E-07 53.5 7.4 84 105-200 8-92 (157)
235 PRK14170 bifunctional 5,10-met 96.7 0.0053 1.1E-07 59.0 7.6 77 106-213 153-230 (284)
236 PRK14190 bifunctional 5,10-met 96.7 0.0052 1.1E-07 59.1 7.6 77 106-213 154-231 (284)
237 PLN02516 methylenetetrahydrofo 96.7 0.0054 1.2E-07 59.4 7.5 76 106-212 163-239 (299)
238 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.0052 1.1E-07 56.6 7.1 79 106-192 19-111 (217)
239 PRK14171 bifunctional 5,10-met 96.7 0.006 1.3E-07 58.7 7.7 75 107-212 156-231 (288)
240 TIGR01809 Shik-DH-AROM shikima 96.7 0.0043 9.2E-08 59.1 6.6 77 107-190 122-202 (282)
241 PRK14180 bifunctional 5,10-met 96.7 0.0064 1.4E-07 58.4 7.8 76 106-212 154-230 (282)
242 PTZ00082 L-lactate dehydrogena 96.6 0.012 2.6E-07 57.2 9.7 69 108-186 4-82 (321)
243 PLN02616 tetrahydrofolate dehy 96.6 0.0054 1.2E-07 60.7 7.4 76 106-212 227-303 (364)
244 cd01339 LDH-like_MDH L-lactate 96.6 0.0086 1.9E-07 57.1 8.4 64 114-186 1-74 (300)
245 PRK14193 bifunctional 5,10-met 96.6 0.0065 1.4E-07 58.4 7.5 77 106-213 154-233 (284)
246 PF13380 CoA_binding_2: CoA bi 96.6 0.015 3.2E-07 48.4 8.7 85 112-213 1-89 (116)
247 PRK04148 hypothetical protein; 96.6 0.025 5.3E-07 48.8 10.3 97 108-213 15-112 (134)
248 PLN02897 tetrahydrofolate dehy 96.6 0.0064 1.4E-07 59.9 7.5 77 106-213 210-287 (345)
249 PRK14166 bifunctional 5,10-met 96.6 0.0074 1.6E-07 58.0 7.7 76 106-212 153-229 (282)
250 PRK10206 putative oxidoreducta 96.6 0.009 1.9E-07 58.2 8.4 82 112-200 2-86 (344)
251 PRK05472 redox-sensing transcr 96.6 0.0034 7.3E-08 57.1 5.1 81 112-199 85-167 (213)
252 PRK14187 bifunctional 5,10-met 96.5 0.0078 1.7E-07 58.1 7.6 76 106-212 156-232 (294)
253 PRK03659 glutathione-regulated 96.5 0.012 2.6E-07 61.7 9.5 77 112-195 401-481 (601)
254 PRK10669 putative cation:proto 96.5 0.013 2.9E-07 60.6 9.6 79 106-193 414-496 (558)
255 PRK14182 bifunctional 5,10-met 96.5 0.0094 2E-07 57.3 7.8 76 106-212 153-229 (282)
256 TIGR02354 thiF_fam2 thiamine b 96.5 0.011 2.4E-07 53.7 7.9 101 105-214 16-146 (200)
257 PRK05678 succinyl-CoA syntheta 96.5 0.018 4E-07 55.4 9.7 90 112-217 9-103 (291)
258 PRK00683 murD UDP-N-acetylmura 96.5 0.01 2.2E-07 59.2 8.2 68 112-190 4-71 (418)
259 TIGR01546 GAPDH-II_archae glyc 96.4 0.016 3.4E-07 56.9 9.2 90 114-209 1-105 (333)
260 PRK00066 ldh L-lactate dehydro 96.4 0.015 3.3E-07 56.3 8.7 68 109-187 5-82 (315)
261 TIGR01470 cysG_Nterm siroheme 96.3 0.03 6.6E-07 51.0 9.8 79 106-193 5-84 (205)
262 PF02629 CoA_binding: CoA bind 96.3 0.0091 2E-07 47.7 5.6 79 112-200 4-84 (96)
263 PRK14174 bifunctional 5,10-met 96.3 0.012 2.6E-07 56.9 7.2 80 106-212 155-235 (295)
264 PF13460 NAD_binding_10: NADH( 96.3 0.04 8.6E-07 47.4 9.8 67 114-189 1-71 (183)
265 COG0169 AroE Shikimate 5-dehyd 96.3 0.0098 2.1E-07 57.1 6.5 95 106-211 122-225 (283)
266 PRK14185 bifunctional 5,10-met 96.2 0.014 3.1E-07 56.3 7.6 77 106-213 153-234 (293)
267 PRK14184 bifunctional 5,10-met 96.2 0.0094 2E-07 57.4 6.2 76 106-212 153-233 (286)
268 PRK09496 trkA potassium transp 96.2 0.045 9.8E-07 54.4 11.1 96 108-211 229-330 (453)
269 PRK03562 glutathione-regulated 96.2 0.025 5.3E-07 59.7 9.7 77 112-195 401-481 (621)
270 cd00650 LDH_MDH_like NAD-depen 96.2 0.035 7.6E-07 51.9 9.7 65 114-186 1-78 (263)
271 TIGR02717 AcCoA-syn-alpha acet 96.1 0.034 7.5E-07 56.3 9.8 87 112-215 8-100 (447)
272 PLN02819 lysine-ketoglutarate 96.0 0.017 3.7E-07 64.2 7.5 85 109-196 567-666 (1042)
273 TIGR02356 adenyl_thiF thiazole 96.0 0.043 9.4E-07 49.6 8.9 89 105-200 16-133 (202)
274 cd05297 GH4_alpha_glucosidase_ 96.0 0.012 2.7E-07 59.1 5.9 74 112-188 1-84 (423)
275 cd01076 NAD_bind_1_Glu_DH NAD( 95.9 0.016 3.5E-07 53.7 6.0 80 106-192 27-120 (227)
276 PRK00421 murC UDP-N-acetylmura 95.9 0.039 8.5E-07 55.6 9.2 71 105-185 2-73 (461)
277 PRK14181 bifunctional 5,10-met 95.8 0.03 6.5E-07 54.0 7.7 81 106-213 149-230 (287)
278 PF03435 Saccharop_dh: Sacchar 95.8 0.03 6.5E-07 54.9 7.7 91 114-213 1-99 (386)
279 PRK00676 hemA glutamyl-tRNA re 95.8 0.027 5.9E-07 55.4 7.3 64 106-186 170-234 (338)
280 PRK14168 bifunctional 5,10-met 95.8 0.029 6.4E-07 54.3 7.3 80 106-212 157-237 (297)
281 COG1064 AdhP Zn-dependent alco 95.8 0.039 8.6E-07 54.3 8.3 91 109-211 166-258 (339)
282 cd01338 MDH_choloroplast_like 95.8 0.036 7.8E-07 54.0 7.9 65 112-186 3-86 (322)
283 PF05368 NmrA: NmrA-like famil 95.7 0.06 1.3E-06 48.5 8.7 69 114-188 1-74 (233)
284 PRK12548 shikimate 5-dehydroge 95.7 0.028 6E-07 53.6 6.6 78 106-190 122-211 (289)
285 PRK01710 murD UDP-N-acetylmura 95.7 0.033 7.1E-07 56.2 7.5 71 106-185 10-84 (458)
286 COG0136 Asd Aspartate-semialde 95.6 0.19 4E-06 49.5 12.4 155 112-296 2-161 (334)
287 PRK12749 quinate/shikimate deh 95.6 0.03 6.4E-07 53.7 6.7 79 106-191 120-209 (288)
288 TIGR01851 argC_other N-acetyl- 95.6 0.075 1.6E-06 51.8 9.2 80 112-214 2-82 (310)
289 PRK14106 murD UDP-N-acetylmura 95.5 0.061 1.3E-06 53.6 8.7 73 107-188 2-78 (450)
290 PF03720 UDPG_MGDP_dh_C: UDP-g 95.4 0.064 1.4E-06 43.6 7.2 82 121-214 17-103 (106)
291 cd05293 LDH_1 A subgroup of L- 95.4 0.049 1.1E-06 52.8 7.6 68 112-186 4-79 (312)
292 cd08230 glucose_DH Glucose deh 95.4 0.17 3.6E-06 48.7 11.1 95 108-212 171-269 (355)
293 PF10100 DUF2338: Uncharacteri 95.4 0.52 1.1E-05 47.6 14.6 168 111-299 1-208 (429)
294 TIGR01759 MalateDH-SF1 malate 95.4 0.085 1.9E-06 51.5 8.9 69 112-186 4-87 (323)
295 PRK11863 N-acetyl-gamma-glutam 95.4 0.091 2E-06 51.2 9.1 78 112-213 3-82 (313)
296 PRK12475 thiamine/molybdopteri 95.3 0.081 1.7E-06 51.9 8.8 90 105-201 19-139 (338)
297 PRK14167 bifunctional 5,10-met 95.3 0.055 1.2E-06 52.4 7.4 80 106-212 153-233 (297)
298 PRK05442 malate dehydrogenase; 95.3 0.068 1.5E-06 52.2 8.0 22 112-133 5-27 (326)
299 PRK00141 murD UDP-N-acetylmura 95.3 0.046 1E-06 55.5 7.1 71 106-185 11-81 (473)
300 PRK01438 murD UDP-N-acetylmura 95.3 0.073 1.6E-06 53.7 8.5 70 107-186 13-86 (480)
301 cd00300 LDH_like L-lactate deh 95.3 0.092 2E-06 50.4 8.7 68 114-188 1-76 (300)
302 PTZ00325 malate dehydrogenase; 95.2 0.041 8.9E-07 53.7 6.3 74 105-187 3-85 (321)
303 KOG2741 Dimeric dihydrodiol de 95.2 0.11 2.4E-06 51.2 9.2 92 112-209 7-101 (351)
304 cd01336 MDH_cytoplasmic_cytoso 95.2 0.081 1.8E-06 51.5 8.2 75 112-186 3-86 (325)
305 PRK06270 homoserine dehydrogen 95.1 0.077 1.7E-06 51.9 7.8 99 112-210 3-123 (341)
306 PF00185 OTCace: Aspartate/orn 95.1 0.17 3.8E-06 44.2 9.3 69 109-188 1-83 (158)
307 TIGR01758 MDH_euk_cyt malate d 95.1 0.069 1.5E-06 52.1 7.4 69 113-187 1-84 (324)
308 COG1063 Tdh Threonine dehydrog 95.1 0.19 4.2E-06 49.0 10.5 94 108-211 167-268 (350)
309 PRK01390 murD UDP-N-acetylmura 95.0 0.065 1.4E-06 53.9 7.3 67 106-184 5-71 (460)
310 PRK03369 murD UDP-N-acetylmura 95.0 0.11 2.4E-06 53.0 9.1 71 106-186 8-78 (488)
311 COG2344 AT-rich DNA-binding pr 95.0 0.04 8.7E-07 50.3 5.0 80 112-200 85-168 (211)
312 PRK09880 L-idonate 5-dehydroge 95.0 0.24 5.2E-06 47.4 10.8 95 108-212 168-266 (343)
313 PRK08306 dipicolinate synthase 95.0 0.12 2.5E-06 49.7 8.5 85 110-209 2-98 (296)
314 COG4074 Mth H2-forming N5,N10- 95.0 0.13 2.8E-06 48.4 8.4 106 159-283 124-231 (343)
315 KOG0022 Alcohol dehydrogenase, 94.9 0.045 9.8E-07 53.6 5.6 50 108-164 191-240 (375)
316 PLN02968 Probable N-acetyl-gam 94.9 0.077 1.7E-06 52.9 7.4 93 112-214 39-136 (381)
317 TIGR01202 bchC 2-desacetyl-2-h 94.9 0.14 3E-06 48.5 8.9 88 109-212 144-231 (308)
318 TIGR01761 thiaz-red thiazoliny 94.9 0.14 3.1E-06 50.4 9.0 86 112-209 4-94 (343)
319 cd00757 ThiF_MoeB_HesA_family 94.9 0.096 2.1E-06 48.1 7.4 28 105-133 16-43 (228)
320 PLN02383 aspartate semialdehyd 94.9 0.098 2.1E-06 51.5 7.8 87 112-214 8-102 (344)
321 PRK14874 aspartate-semialdehyd 94.8 0.082 1.8E-06 51.5 7.2 89 112-213 2-95 (334)
322 cd05294 LDH-like_MDH_nadp A la 94.8 0.13 2.9E-06 49.5 8.6 69 112-187 1-81 (309)
323 PRK06349 homoserine dehydrogen 94.8 0.085 1.8E-06 53.2 7.4 92 112-210 4-102 (426)
324 COG1648 CysG Siroheme synthase 94.8 0.18 3.9E-06 46.4 9.0 82 105-195 7-89 (210)
325 PRK05671 aspartate-semialdehyd 94.8 0.086 1.9E-06 51.8 7.3 90 112-214 5-99 (336)
326 cd01492 Aos1_SUMO Ubiquitin ac 94.8 0.15 3.2E-06 46.1 8.2 28 105-133 16-43 (197)
327 TIGR03366 HpnZ_proposed putati 94.7 0.23 4.9E-06 46.3 9.6 93 109-212 120-218 (280)
328 PLN02602 lactate dehydrogenase 94.7 0.1 2.2E-06 51.6 7.5 68 112-186 38-113 (350)
329 COG2910 Putative NADH-flavin r 94.6 0.12 2.6E-06 47.3 7.1 94 112-214 1-106 (211)
330 KOG0067 Transcription factor C 94.6 0.025 5.3E-07 56.4 2.9 99 104-216 172-274 (435)
331 PRK02472 murD UDP-N-acetylmura 94.6 0.17 3.7E-06 50.4 8.9 71 107-186 2-76 (447)
332 cd00704 MDH Malate dehydrogena 94.6 0.13 2.8E-06 50.2 7.8 21 113-133 2-23 (323)
333 cd01485 E1-1_like Ubiquitin ac 94.5 0.19 4.1E-06 45.4 8.2 36 105-147 14-50 (198)
334 PF00899 ThiF: ThiF family; I 94.5 0.078 1.7E-06 44.4 5.4 31 112-148 3-34 (135)
335 COG0002 ArgC Acetylglutamate s 94.5 0.26 5.7E-06 48.7 9.6 95 111-213 2-102 (349)
336 PRK02006 murD UDP-N-acetylmura 94.5 0.14 3E-06 52.2 8.1 73 107-189 4-82 (498)
337 TIGR01019 sucCoAalpha succinyl 94.4 0.27 5.8E-06 47.4 9.5 91 112-216 7-100 (286)
338 COG0771 MurD UDP-N-acetylmuram 94.4 0.11 2.4E-06 53.0 7.2 71 106-185 3-76 (448)
339 PRK05690 molybdopterin biosynt 94.4 0.18 3.8E-06 47.2 8.0 28 105-133 27-54 (245)
340 PLN02353 probable UDP-glucose 94.4 0.31 6.7E-06 50.0 10.4 102 106-215 320-450 (473)
341 cd01483 E1_enzyme_family Super 94.4 0.36 7.7E-06 40.7 9.2 29 113-147 1-30 (143)
342 cd05290 LDH_3 A subgroup of L- 94.3 0.074 1.6E-06 51.5 5.5 68 113-187 1-77 (307)
343 PRK05086 malate dehydrogenase; 94.3 0.15 3.2E-06 49.4 7.4 73 112-188 1-79 (312)
344 cd08237 ribitol-5-phosphate_DH 94.3 0.36 7.9E-06 46.3 10.1 91 109-211 163-255 (341)
345 PRK12809 putative oxidoreducta 94.2 0.17 3.7E-06 53.4 8.3 73 109-188 309-405 (639)
346 TIGR01772 MDH_euk_gproteo mala 94.2 0.21 4.6E-06 48.5 8.3 68 113-188 1-77 (312)
347 PLN00112 malate dehydrogenase 94.1 0.84 1.8E-05 46.6 12.8 76 112-187 101-185 (444)
348 PTZ00187 succinyl-CoA syntheta 94.1 0.36 7.8E-06 47.2 9.7 91 112-216 30-125 (317)
349 TIGR00978 asd_EA aspartate-sem 94.1 0.18 3.9E-06 49.2 7.6 94 112-214 1-106 (341)
350 PRK10537 voltage-gated potassi 94.0 0.32 7E-06 48.7 9.5 89 112-209 241-334 (393)
351 TIGR00670 asp_carb_tr aspartat 94.0 0.2 4.4E-06 48.4 7.8 71 106-185 146-223 (301)
352 PF04016 DUF364: Domain of unk 94.0 0.083 1.8E-06 45.8 4.7 90 105-212 6-95 (147)
353 PRK08328 hypothetical protein; 93.9 0.33 7.2E-06 44.9 8.8 28 105-133 22-49 (231)
354 PRK08040 putative semialdehyde 93.9 0.16 3.4E-06 50.0 6.8 88 112-214 5-99 (336)
355 PLN02586 probable cinnamyl alc 93.9 0.5 1.1E-05 45.9 10.3 93 109-211 183-277 (360)
356 PRK14027 quinate/shikimate deh 93.8 0.12 2.6E-06 49.4 5.8 76 107-190 124-206 (283)
357 PLN02520 bifunctional 3-dehydr 93.8 0.14 3E-06 53.1 6.7 75 107-190 376-451 (529)
358 PRK07688 thiamine/molybdopteri 93.8 0.34 7.4E-06 47.5 9.0 89 105-200 19-138 (339)
359 PRK02318 mannitol-1-phosphate 93.8 0.15 3.1E-06 50.6 6.4 84 112-202 1-104 (381)
360 PF03447 NAD_binding_3: Homose 93.7 0.29 6.4E-06 39.8 7.2 83 118-210 1-88 (117)
361 cd01337 MDH_glyoxysomal_mitoch 93.7 0.18 4E-06 49.0 6.9 70 112-187 1-77 (310)
362 COG1062 AdhC Zn-dependent alco 93.7 0.84 1.8E-05 45.3 11.4 128 109-252 185-331 (366)
363 PRK06728 aspartate-semialdehyd 93.7 0.21 4.6E-06 49.4 7.4 89 112-214 6-101 (347)
364 PRK05562 precorrin-2 dehydroge 93.7 0.64 1.4E-05 43.3 10.1 85 106-199 21-106 (223)
365 PRK15076 alpha-galactosidase; 93.6 0.091 2E-06 53.2 4.8 75 111-188 1-85 (431)
366 PRK04690 murD UDP-N-acetylmura 93.6 0.24 5.3E-06 50.3 7.8 69 108-186 6-77 (468)
367 TIGR03026 NDP-sugDHase nucleot 93.5 0.47 1E-05 47.3 9.6 90 106-211 309-409 (411)
368 PRK08664 aspartate-semialdehyd 93.5 0.27 5.9E-06 48.1 7.8 93 112-213 4-108 (349)
369 TIGR02355 moeB molybdopterin s 93.5 0.29 6.3E-06 45.7 7.6 28 105-133 19-46 (240)
370 TIGR02822 adh_fam_2 zinc-bindi 93.5 0.54 1.2E-05 45.0 9.6 90 109-212 165-254 (329)
371 PLN00106 malate dehydrogenase 93.5 0.2 4.4E-06 48.9 6.7 70 112-187 19-95 (323)
372 PRK00779 ornithine carbamoyltr 93.4 0.74 1.6E-05 44.6 10.5 71 106-185 148-224 (304)
373 PRK04308 murD UDP-N-acetylmura 93.4 0.3 6.4E-06 48.9 8.1 71 107-186 2-75 (445)
374 TIGR01745 asd_gamma aspartate- 93.4 0.56 1.2E-05 46.8 9.8 90 112-214 1-99 (366)
375 PRK08644 thiamine biosynthesis 93.3 0.52 1.1E-05 43.1 8.8 28 105-133 23-50 (212)
376 TIGR01318 gltD_gamma_fam gluta 93.3 0.4 8.8E-06 48.6 8.8 73 109-188 140-236 (467)
377 PLN03075 nicotianamine synthas 93.2 0.4 8.8E-06 46.5 8.3 121 85-212 98-233 (296)
378 COG0026 PurK Phosphoribosylami 93.1 0.13 2.9E-06 51.1 4.9 66 112-184 2-68 (375)
379 cd01487 E1_ThiF_like E1_ThiF_l 93.1 0.71 1.5E-05 40.8 9.1 30 113-148 1-31 (174)
380 PRK09414 glutamate dehydrogena 93.1 0.22 4.8E-06 50.8 6.6 36 106-148 228-263 (445)
381 PLN02527 aspartate carbamoyltr 93.1 0.62 1.3E-05 45.2 9.4 72 106-185 147-225 (306)
382 PRK06019 phosphoribosylaminoim 93.0 0.18 3.8E-06 49.6 5.6 65 111-184 2-69 (372)
383 CHL00194 ycf39 Ycf39; Provisio 93.0 0.21 4.5E-06 47.4 6.0 69 112-187 1-73 (317)
384 PF03059 NAS: Nicotianamine sy 93.0 0.61 1.3E-05 44.8 9.1 97 112-214 122-234 (276)
385 PRK04284 ornithine carbamoyltr 93.0 0.36 7.9E-06 47.4 7.7 71 106-185 151-231 (332)
386 PRK07806 short chain dehydroge 93.0 0.87 1.9E-05 40.8 9.7 37 107-150 3-40 (248)
387 PRK05597 molybdopterin biosynt 92.9 0.49 1.1E-05 46.6 8.5 28 105-133 23-50 (355)
388 PRK08762 molybdopterin biosynt 92.8 0.61 1.3E-05 46.1 9.1 37 105-148 130-167 (376)
389 PRK03806 murD UDP-N-acetylmura 92.7 0.44 9.6E-06 47.5 8.1 71 107-186 3-73 (438)
390 PRK08223 hypothetical protein; 92.7 0.67 1.5E-05 44.7 9.0 29 104-133 21-49 (287)
391 PRK06598 aspartate-semialdehyd 92.7 0.33 7.1E-06 48.4 7.1 92 111-214 1-100 (369)
392 TIGR01771 L-LDH-NAD L-lactate 92.7 0.54 1.2E-05 45.3 8.4 66 116-187 1-73 (299)
393 PRK12562 ornithine carbamoyltr 92.7 0.43 9.3E-06 46.9 7.8 71 107-186 153-233 (334)
394 PRK05600 thiamine biosynthesis 92.7 0.44 9.5E-06 47.3 8.0 89 105-200 36-153 (370)
395 PRK06392 homoserine dehydrogen 92.7 0.46 1E-05 46.5 8.0 98 112-210 1-114 (326)
396 TIGR01296 asd_B aspartate-semi 92.7 0.28 6.1E-06 48.1 6.5 85 113-213 1-93 (339)
397 PRK14573 bifunctional D-alanyl 92.7 0.36 7.9E-06 52.3 7.9 65 112-185 5-70 (809)
398 TIGR02819 fdhA_non_GSH formald 92.6 1.2 2.7E-05 44.0 11.0 97 109-212 185-299 (393)
399 PRK12550 shikimate 5-dehydroge 92.5 0.33 7.2E-06 46.2 6.6 67 112-190 123-190 (272)
400 COG2227 UbiG 2-polyprenyl-3-me 92.5 0.89 1.9E-05 42.9 9.3 92 108-212 58-161 (243)
401 PRK14804 ornithine carbamoyltr 92.5 0.57 1.2E-05 45.6 8.2 70 107-186 150-226 (311)
402 PRK12771 putative glutamate sy 92.4 0.31 6.7E-06 50.5 6.7 76 107-189 134-233 (564)
403 PRK00856 pyrB aspartate carbam 92.4 0.51 1.1E-05 45.8 7.7 67 106-186 152-221 (305)
404 PLN00141 Tic62-NAD(P)-related 92.3 1.1 2.3E-05 41.0 9.5 76 106-188 13-95 (251)
405 COG0078 ArgF Ornithine carbamo 92.3 0.84 1.8E-05 44.5 9.0 85 108-203 151-248 (310)
406 cd01486 Apg7 Apg7 is an E1-lik 92.3 0.32 7E-06 47.3 6.2 21 113-133 1-21 (307)
407 TIGR01757 Malate-DH_plant mala 92.3 1.2 2.5E-05 44.8 10.4 22 112-133 45-67 (387)
408 PRK07878 molybdopterin biosynt 92.2 0.57 1.2E-05 46.7 8.1 28 105-133 37-64 (392)
409 PRK02255 putrescine carbamoylt 92.1 1.1 2.4E-05 44.1 9.8 71 107-186 151-230 (338)
410 PRK01713 ornithine carbamoyltr 92.1 0.53 1.1E-05 46.2 7.5 71 107-186 153-233 (334)
411 TIGR01087 murD UDP-N-acetylmur 92.0 0.45 9.8E-06 47.3 7.1 65 113-186 1-70 (433)
412 PRK01581 speE spermidine synth 91.9 1.2 2.7E-05 44.5 9.9 98 109-213 149-269 (374)
413 PRK03803 murD UDP-N-acetylmura 91.9 0.48 1E-05 47.5 7.2 66 112-185 7-75 (448)
414 PRK14031 glutamate dehydrogena 91.9 0.81 1.7E-05 46.8 8.8 36 106-148 224-259 (444)
415 TIGR03451 mycoS_dep_FDH mycoth 91.9 1.5 3.2E-05 42.3 10.3 94 109-212 176-276 (358)
416 PRK10637 cysG siroheme synthas 91.8 0.91 2E-05 46.2 9.2 80 105-193 7-87 (457)
417 KOG0023 Alcohol dehydrogenase, 91.8 0.53 1.2E-05 46.4 7.1 94 109-211 181-278 (360)
418 cd08255 2-desacetyl-2-hydroxye 91.8 1.5 3.3E-05 40.0 9.8 91 109-212 97-190 (277)
419 PRK02102 ornithine carbamoyltr 91.7 0.64 1.4E-05 45.7 7.6 72 106-186 151-232 (331)
420 PLN02342 ornithine carbamoyltr 91.7 0.68 1.5E-05 45.8 7.9 70 106-186 190-267 (348)
421 PLN02178 cinnamyl-alcohol dehy 91.7 1.5 3.2E-05 43.0 10.3 92 109-211 178-272 (375)
422 PRK05786 fabG 3-ketoacyl-(acyl 91.6 2.2 4.9E-05 37.8 10.6 38 107-151 2-40 (238)
423 TIGR01532 E4PD_g-proteo D-eryt 91.3 0.87 1.9E-05 44.6 8.1 96 113-213 1-121 (325)
424 TIGR01082 murC UDP-N-acetylmur 91.3 0.6 1.3E-05 46.9 7.2 64 113-185 1-65 (448)
425 PRK03515 ornithine carbamoyltr 91.3 0.85 1.8E-05 44.9 8.1 70 107-185 153-232 (336)
426 PRK00517 prmA ribosomal protei 91.3 0.83 1.8E-05 42.4 7.6 88 108-211 118-212 (250)
427 PLN02514 cinnamyl-alcohol dehy 91.3 1.6 3.5E-05 42.2 9.9 94 109-212 180-275 (357)
428 PRK12769 putative oxidoreducta 91.3 0.78 1.7E-05 48.6 8.3 72 109-187 326-421 (654)
429 PRK07200 aspartate/ornithine c 91.2 0.79 1.7E-05 46.1 7.9 71 107-186 184-270 (395)
430 PRK07411 hypothetical protein; 91.1 0.67 1.5E-05 46.3 7.3 88 105-199 33-149 (390)
431 PLN02477 glutamate dehydrogena 91.1 0.42 9E-06 48.3 5.8 32 106-144 202-233 (410)
432 PLN00125 Succinyl-CoA ligase [ 91.1 1.3 2.8E-05 43.0 9.0 90 112-215 13-105 (300)
433 PRK10309 galactitol-1-phosphat 91.1 1.5 3.3E-05 41.8 9.4 47 109-162 160-206 (347)
434 TIGR02469 CbiT precorrin-6Y C5 91.1 3.9 8.4E-05 32.4 10.5 94 109-210 19-120 (124)
435 cd08239 THR_DH_like L-threonin 91.1 1.8 3.9E-05 41.0 9.8 93 108-211 162-261 (339)
436 PRK13814 pyrB aspartate carbam 91.0 0.84 1.8E-05 44.4 7.7 65 107-184 154-223 (310)
437 cd08281 liver_ADH_like1 Zinc-d 91.0 1.7 3.6E-05 42.1 9.8 93 109-211 191-289 (371)
438 PRK06463 fabG 3-ketoacyl-(acyl 91.0 1.4 3E-05 39.9 8.7 38 107-151 4-42 (255)
439 COG0039 Mdh Malate/lactate deh 90.9 0.42 9.2E-06 46.7 5.4 71 112-186 1-77 (313)
440 PRK08374 homoserine dehydrogen 90.8 1.5 3.1E-05 43.0 9.2 88 112-199 3-112 (336)
441 PRK08265 short chain dehydroge 90.6 1.3 2.8E-05 40.5 8.2 38 106-150 2-40 (261)
442 cd05188 MDR Medium chain reduc 90.5 3.5 7.7E-05 36.6 10.8 94 108-212 133-232 (271)
443 PLN02740 Alcohol dehydrogenase 90.3 1.8 3.9E-05 42.2 9.3 85 109-204 198-291 (381)
444 cd01491 Ube1_repeat1 Ubiquitin 90.3 1.1 2.4E-05 43.2 7.6 36 105-147 14-50 (286)
445 PRK10083 putative oxidoreducta 90.2 3 6.5E-05 39.3 10.6 94 108-211 159-258 (339)
446 TIGR03570 NeuD_NnaD sugar O-ac 90.1 0.78 1.7E-05 39.8 6.0 80 113-200 1-81 (201)
447 PRK07877 hypothetical protein; 90.1 0.6 1.3E-05 50.4 6.3 111 78-198 71-216 (722)
448 PRK02705 murD UDP-N-acetylmura 90.1 1.2 2.6E-05 44.5 8.1 67 113-185 2-75 (459)
449 PLN02827 Alcohol dehydrogenase 90.0 2.3 5.1E-05 41.6 9.9 92 109-210 193-293 (378)
450 PRK06057 short chain dehydroge 89.9 1.8 3.9E-05 39.2 8.5 37 106-149 3-40 (255)
451 TIGR03316 ygeW probable carbam 89.9 1.1 2.4E-05 44.5 7.6 71 107-186 167-253 (357)
452 PRK12825 fabG 3-ketoacyl-(acyl 89.9 2.7 5.9E-05 37.0 9.5 38 107-151 3-41 (249)
453 TIGR03201 dearomat_had 6-hydro 89.8 2.2 4.8E-05 40.9 9.4 46 109-162 166-211 (349)
454 cd08234 threonine_DH_like L-th 89.7 2 4.3E-05 40.3 8.8 94 109-212 159-257 (334)
455 PRK15182 Vi polysaccharide bio 89.7 2.4 5.3E-05 42.8 9.9 95 106-214 310-415 (425)
456 PRK05867 short chain dehydroge 89.7 0.96 2.1E-05 41.0 6.5 38 105-149 4-42 (253)
457 cd08277 liver_alcohol_DH_like 89.7 2.9 6.2E-05 40.4 10.1 87 108-204 183-277 (365)
458 COG0334 GdhA Glutamate dehydro 89.6 1.1 2.5E-05 45.2 7.4 38 107-151 204-241 (411)
459 PLN02214 cinnamoyl-CoA reducta 89.6 1.2 2.7E-05 42.8 7.5 76 106-188 6-91 (342)
460 cd08285 NADP_ADH NADP(H)-depen 89.6 3.8 8.3E-05 39.0 10.8 93 109-211 166-265 (351)
461 TIGR03649 ergot_EASG ergot alk 89.6 0.48 1.1E-05 43.9 4.5 67 113-189 1-78 (285)
462 TIGR00658 orni_carb_tr ornithi 89.5 1.4 3E-05 42.7 7.6 72 106-186 144-224 (304)
463 COG1004 Ugd Predicted UDP-gluc 89.5 1 2.2E-05 45.4 6.9 86 108-210 308-406 (414)
464 PLN02662 cinnamyl-alcohol dehy 89.4 1.3 2.9E-05 41.3 7.4 72 109-187 3-85 (322)
465 cd05283 CAD1 Cinnamyl alcohol 89.3 2.4 5.2E-05 40.2 9.2 93 108-212 168-263 (337)
466 PRK08192 aspartate carbamoyltr 89.3 1.5 3.3E-05 43.2 7.9 71 107-185 156-233 (338)
467 PRK06182 short chain dehydroge 89.3 3.1 6.8E-05 38.1 9.6 71 109-187 2-83 (273)
468 TIGR02818 adh_III_F_hyde S-(hy 89.3 2.9 6.2E-05 40.6 9.8 46 109-162 185-231 (368)
469 PRK07774 short chain dehydroge 89.2 2.8 6.1E-05 37.5 9.1 37 106-149 2-39 (250)
470 PRK12814 putative NADPH-depend 89.2 1.4 3E-05 46.9 8.1 74 108-188 191-288 (652)
471 COG0031 CysK Cysteine synthase 89.2 2.3 4.9E-05 41.5 8.9 90 186-286 41-137 (300)
472 PRK06114 short chain dehydroge 89.2 3.8 8.2E-05 37.1 10.0 38 107-151 5-43 (254)
473 KOG3007 Mu-crystallin [Amino a 89.2 0.6 1.3E-05 45.0 4.8 98 112-216 139-241 (333)
474 PRK09242 tropinone reductase; 89.1 3.5 7.6E-05 37.3 9.7 37 107-150 6-43 (257)
475 PRK12937 short chain dehydroge 89.0 3 6.6E-05 37.1 9.1 37 107-150 2-39 (245)
476 PRK13394 3-hydroxybutyrate deh 89.0 1.4 3.1E-05 39.6 7.0 38 106-150 3-41 (262)
477 cd05313 NAD_bind_2_Glu_DH NAD( 89.0 0.69 1.5E-05 43.9 5.1 32 106-144 34-65 (254)
478 PRK11891 aspartate carbamoyltr 89.0 1.6 3.4E-05 44.5 8.0 71 108-186 239-316 (429)
479 PRK12810 gltD glutamate syntha 88.8 2 4.3E-05 43.6 8.6 75 106-187 139-237 (471)
480 PRK12409 D-amino acid dehydrog 88.8 0.58 1.3E-05 45.8 4.7 34 111-150 1-34 (410)
481 TIGR03693 ocin_ThiF_like putat 88.8 2.2 4.8E-05 45.3 9.1 99 109-214 128-242 (637)
482 PRK13984 putative oxidoreducta 88.8 1.5 3.3E-05 45.8 7.9 72 109-187 282-377 (604)
483 PRK07060 short chain dehydroge 88.7 1.8 4E-05 38.5 7.5 37 107-150 6-43 (245)
484 PRK07231 fabG 3-ketoacyl-(acyl 88.7 0.85 1.8E-05 40.7 5.3 37 107-150 2-39 (251)
485 TIGR01161 purK phosphoribosyla 88.6 0.91 2E-05 44.0 5.8 62 113-184 1-66 (352)
486 PRK12828 short chain dehydroge 88.6 4.5 9.7E-05 35.6 9.8 37 107-150 4-41 (239)
487 PLN03209 translocon at the inn 88.5 0.78 1.7E-05 48.3 5.6 73 106-187 76-168 (576)
488 cd08283 FDH_like_1 Glutathione 88.5 4.3 9.2E-05 39.7 10.5 97 109-212 184-306 (386)
489 PRK06935 2-deoxy-D-gluconate 3 88.4 4.3 9.4E-05 36.8 9.9 42 101-149 6-48 (258)
490 cd08298 CAD2 Cinnamyl alcohol 88.4 3 6.4E-05 39.0 9.0 89 109-211 167-255 (329)
491 cd05279 Zn_ADH1 Liver alcohol 88.4 3.3 7.3E-05 40.0 9.6 93 109-211 183-284 (365)
492 PRK05717 oxidoreductase; Valid 88.4 2.3 5E-05 38.5 8.0 38 105-149 5-43 (255)
493 COG0289 DapB Dihydrodipicolina 88.3 4.1 9E-05 39.0 9.8 160 112-285 3-179 (266)
494 PF00070 Pyr_redox: Pyridine n 88.3 1 2.3E-05 34.1 4.9 32 113-150 1-32 (80)
495 PLN02948 phosphoribosylaminoim 88.3 0.93 2E-05 47.7 6.0 74 104-187 16-92 (577)
496 KOG1495 Lactate dehydrogenase 88.3 2.7 5.8E-05 40.8 8.5 102 104-212 14-137 (332)
497 COG4408 Uncharacterized protei 88.3 16 0.00034 36.6 13.9 169 111-300 4-211 (431)
498 PRK06197 short chain dehydroge 88.2 4.6 0.0001 37.9 10.2 45 97-149 4-49 (306)
499 cd08301 alcohol_DH_plants Plan 88.2 3.8 8.2E-05 39.5 9.8 46 109-162 187-233 (369)
500 KOG0399 Glutamate synthase [Am 88.0 2 4.3E-05 48.8 8.3 82 99-187 1774-1879(2142)
No 1
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=2.8e-43 Score=348.87 Aligned_cols=219 Identities=32% Similarity=0.484 Sum_probs=198.3
Q ss_pred ccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+||||+++||+++++|.... . +. |-.|+++...|+| |+|+|||+|+||.++|.+|+++ |++|+++.|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r-~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCR-F-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccce-e-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 58999999999888665443 3 11 2255777899999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccC
Q 021114 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD 225 (317)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~ 225 (317)
+++++.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+. +..
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 5788889999997 468999999999999999999877788899999999999999999998653 458
Q ss_pred CCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhcc
Q 021114 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSD 301 (317)
Q Consensus 226 l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~d 301 (317)
+|++++||.++|++||+.+|++|++| +|+|++|+++ +|+++++.|.+++|..++|+.+ +++|||++|++||
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 89999999999999999999999998 8999999999 8999999999999999999997 8999999999999
Q ss_pred chhhhhhhcCcc
Q 021114 302 IFGERGECFPTP 313 (317)
Q Consensus 302 l~~e~~il~g~~ 313 (317)
|||||+||||+.
T Consensus 217 L~GEq~vLcG~~ 228 (487)
T PRK05225 217 LMGEQTILCGML 228 (487)
T ss_pred chhhHHHHHhHH
Confidence 999999999986
No 2
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.5e-41 Score=316.78 Aligned_cols=188 Identities=39% Similarity=0.658 Sum_probs=179.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|+| |+|+|||+|++|.++|+|||++ |.+|++|.|.++.++++|.+.|+. +.+.+|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 57899 9999999999999999999999 999999999999999999999998 57999999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+||..+.++++ +|.|.|++|+.|..+||+++.+-. ..+|++++|+++.|++||+.+|++|++| +|.+++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 899999999999999999985533 4789999999999999999999999998 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcc
Q 021114 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
++||.++++++.+++|+.++|+.| +++|||++|+++||||||+||||+.
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl 204 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL 204 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHH
Confidence 999999999999999999999987 6999999999999999999999975
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=6.8e-39 Score=307.47 Aligned_cols=189 Identities=37% Similarity=0.591 Sum_probs=173.0
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
....|+| ++|||||+|+||.++|++|+++ |++|++++++ .++.+.+.+.|+. ..+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 4588999 9999999999999999999999 9999888876 4566677778886 358999999999999
Q ss_pred EccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 184 LavP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
+++|+..+.+++. +++++||+|++|+.+|||++.+-+ ..+|++++|+.+.|++||+.+|++|++| .|.|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999987777886 799999999999999999985533 4778999999999999999999999998 899999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcc
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
|+++||.++++.+.++++..++|+.| +++|||++|+++||||||+||||+.
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~ 201 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGV 201 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHH
Confidence 99999999999999999999999997 7999999999999999999999984
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=5.1e-36 Score=289.24 Aligned_cols=191 Identities=38% Similarity=0.598 Sum_probs=176.2
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
....|+| ++|||||+|+||.++|++|+++ |++|++++++++++.+.+.+.|+.. .+.+|++++||+|+
T Consensus 11 ~~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVv 78 (330)
T PRK05479 11 DLSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIM 78 (330)
T ss_pred ChhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEE
Confidence 3578899 9999999999999999999999 9999888888777778888888873 48999999999999
Q ss_pred EccCCchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 184 LLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 184 LavP~~~~~~vl-~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
+++|++.+.+++ ++++++|++|++|+++||+++.+.+. .+|+++++|++|||+|++.+|+.|+.| +|++++
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l 150 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCL 150 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEE
Confidence 999999998898 68999999999999999999987764 778899999999999999999999998 899999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcce
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTPI 314 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~~ 314 (317)
+++++|+++++.+.+++|+.++|+.+ +++|||++|+++||||||+||||+..
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~ 204 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLT 204 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHH
Confidence 99999999999999999999999996 69999999999999999999999753
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=6.6e-34 Score=273.13 Aligned_cols=186 Identities=40% Similarity=0.621 Sum_probs=167.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+| |+|+|||+|+||.++|++|+++ |+++++++++++++.+.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887666677777788863 468899999999999999
Q ss_pred CchHHH-HHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|+.+.. +.+++.+.++++.+|.++||+++.+++. .+|+++++|++|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995555 5568999999999999999999988775 778889999999999999889999998 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--cEEecCchhhhhccchhhhhhhcCcc
Q 021114 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~--~~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
+|.++++.+.+++|+.++|.. .+++|+|++|+++|||||+|+|||+-
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHH
Confidence 999999999999999999999 47999999999999999999999863
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.98 E-value=2.8e-32 Score=238.79 Aligned_cols=161 Identities=44% Similarity=0.721 Sum_probs=136.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+| |+|+|||+|++|.++|+|||++ |++|+++.|++++++++|++.||. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999998899999999998 5699999999999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|..+.++++ +|.++||+|++|..+|||++.+-. ..+|+++++++++|++|++.+|++|++| .|.+++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 899999999999999999985432 4778899999999999999999999998 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021114 267 QDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~ 288 (317)
||.++++.|.+++|..++|+.|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999765
No 7
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.87 E-value=1.9e-21 Score=183.28 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=134.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+|+||.+++++|.+. |+ ++++.++ +.+..+.+. +.|+.. ..+..|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r-~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDL-NVSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECC-CHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 64 4555444 444455444 367643 457888999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
||+...++++++.+.++++++|+ +++|+++..++. .++...+++|+|||+|... | +|++. +++
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence 99888899999999899888776 789999999886 6666678999999999776 4 68888 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
.++++++..+.++.||+.+|...++ .++.|+.-|.|.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~~~~--------~E~~~d~~talsgs 174 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQTEVV--------NEKLMDVVTSISGS 174 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEE--------cHHHhhhHHHhccC
Confidence 8889999999999999999976555 56677777777664
No 8
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.86 E-value=1e-20 Score=179.43 Aligned_cols=169 Identities=17% Similarity=0.243 Sum_probs=138.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||+++|+.|++. |+.+ +++.+.+....+.+.+.|++++ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9977 5666666667788888898852 22233 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh-hHHHHhhcccccCCCceEEEEeccC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...++++++.+++++|++|+|+++++-..++......|++.+||+.|| +.|++ ..++| ++..+++||.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCccccccc--------CCCEEEEcCCCC
Confidence 999999999999999999999999974333322235566559999999 55663 33344 457999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.+.+.++.++++|+++| .+++.+|+++|=
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD 175 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHD 175 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHh
Confidence 98999999999999999 788899999984
No 9
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=178.00 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=140.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++|||||+|+||.+++.+|.+. | .+|++.++..++....+.+.|... ..+.++++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 37899999999999999999999 7 367777776554445677777762 568889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
+|+...+++.++.+ ..++++|+ +++|+.+..++. .++ +.+++|+|||+|... | +|++. +++
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence 99999999999988 66777655 999999999887 777 899999999999877 5 78888 788
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
..+++++..+.+.+|++.+|...++ .+++|+.-|.+.|.
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v~~v--------~E~~~da~TaisGS 171 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKVVEV--------EESLMDAVTALSGS 171 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCeEEe--------chHHhhHHHHHhcC
Confidence 8899999999999999999977777 67888887777663
No 10
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.82 E-value=1.2e-19 Score=170.64 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=128.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|+|||+|+||+++|+.|++. |++|++++ ++.+..+.+.+.|.... ...+. +.++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d-~~~~~~~~a~~~g~~~~--~~~~~-~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVS-RRESTCERAIERGLVDE--ASTDL-SLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEE-CCHHHHHHHHHCCCccc--ccCCH-hHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999999 98876554 44556677777886531 12233 578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
.++++++.++++++++|+|+++++...++. .......||+.||.. +++ ...++.+....+.|.++++||.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 999999999999999999999997644443 111123599999943 322 112223333334568999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 272 RATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 272 ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++++.++.+++.+| .+++++++++|
T Consensus 146 ~~~~~v~~l~~~lG-~~~v~~~~~~h 170 (279)
T PRK07417 146 NALAIVEELAVSLG-SKIYTADPEEH 170 (279)
T ss_pred HHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 99999999999999 45667777776
No 11
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.82 E-value=3.9e-19 Score=173.22 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=129.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+|+||+++|++|++. |+++.++.+... .....+...|+.+ ....++++++++||+||+++|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 987665554432 2222333445542 223577889999999999999998
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 191 ~~~vl~ei~~-~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+ +..+..++...++|.++++||.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e-~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSH-KSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCc-hhhHHHhcHHHHCCCcEEEecCCCC
Confidence 8889999987 4899999999999975433221123455678999999 55654 2223333334445688999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
+++.++.++++++.+| .+++.++.++|
T Consensus 151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H 177 (359)
T PRK06545 151 DPDAVAELKDLLSGTG-AKFVVLDAEEH 177 (359)
T ss_pred CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 9999999999999999 45555677776
No 12
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.80 E-value=7.6e-19 Score=165.48 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=128.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHH-HHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEA-RAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A-~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|++|+|||+|+||.+++++|++. | .+++++.++..+..+.. .+.+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 47899999999999999999988 7 46766666543322222 2222 221 3577888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 185 LISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
++|++...++++++.++++++++| ..+.|+.+..++. .+|. .++||+|||+|... | +|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-E
Confidence 999999999999999988888765 4889999888876 5554 58999999999776 4 67887 6
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
++..+++++..+.++.+|+.+|...++ .++.|+--|.|.|.
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~~v--------~E~~~d~~tal~gs 174 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVMTI--------REENMDIASNLTSS 174 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEEEE--------chhhCceeeeeecC
Confidence 788889999999999999999966655 34556666666553
No 13
>PLN02256 arogenate dehydrogenase
Probab=99.80 E-value=1.6e-18 Score=166.11 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=128.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP 187 (317)
++ ++|+|||+|+||+++|+.|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+||+|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 55 8999999999999999999998 88876555543 235666778763 45788876 47999999999
Q ss_pred CchHHHHHHHH-HhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 188 ~~~~~~vl~ei-~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+....++++++ .++++++++|+|+++++ +..++. .++.+.+||+.||+..... + +....+.++++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~-------~-~~~~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPES-------G-KGGWAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCC-------C-ccccCCCeEEE
Confidence 99888999988 67899999999998865 334443 5566788999999774332 1 11234567777
Q ss_pred Eec----cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 264 tp~----~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
++. .+.++++++.++++|+.+| .+++++|+++|-+
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~ 209 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDR 209 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhH
Confidence 664 5667889999999999999 7889999999964
No 14
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.80 E-value=1.5e-18 Score=163.00 Aligned_cols=152 Identities=13% Similarity=0.161 Sum_probs=121.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+|+||.+++++|.+. | .++++.+|+.++..+. +.+.|+.. ..++.|+++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 8999999999999999999988 7 5676666654333333 33457653 467888999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
||+...++++++.+.++++++|++ ++|+.+..++. .++.+.++++.|||++... + .|.+. +++
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccEE-Eee
Confidence 999999999999988888998886 59998877775 4455678999999987665 2 35664 778
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 266 HQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
..+.+++..+.++.+|+.+|...+
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~ 161 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV 161 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE
Confidence 888889999999999999996443
No 15
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.79 E-value=2.5e-18 Score=159.43 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=126.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|||+|||+|+||.+|+++|.+. |+ +++++++++.+..+.+.+.|+.. ..+..|+++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999998 87 67666354444556666778764 4678889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
++...++++++.+.++++++|+ +++|+++..++. .++.. ++++.|||.|... | .+.+. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----CceEE-EEeC
Confidence 9888889999988888888765 678988777664 33433 7999999998765 2 33444 6777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
...+++..+.++.+++.+|. ++.. .++.|+.-+-+.|.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~------~e~~~d~~~~~~g~ 171 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV------DEKLLDAVTGLSGS 171 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe------CHHHcchhHhhhcC
Confidence 77889999999999999996 4433 23445555444443
No 16
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.78 E-value=2.4e-18 Score=160.53 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=127.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+||+|||+|+||++++++|.+. +. ++++ .+++.+. .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~-~~~~~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYY-HTPSKKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEE-ECCChhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 3444 3333221 23332 4577888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
|+...++++++.++++++.+|++++|+++..++. .++....+++.|||.|... | +|. +.+++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g~-t~i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QGS-LVFCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----cee-EEEEeCC
Confidence 9999999999999888777788999999888776 5555557899999998544 2 344 5578888
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc-cee
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT-PII 315 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~-~~~ 315 (317)
+.+++..+.++++|+.+|...++ .++.|+--|.++|+ |-.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v--------~E~~~d~~ta~~gsgPA~ 171 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEI--------KEKDMDIATAISGCGPAY 171 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEE--------ChHHcchhhhhcCCHHHH
Confidence 88999999999999999976666 56667777888887 643
No 17
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.78 E-value=6.4e-18 Score=158.34 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=123.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||+++|++|++. |+ +|+ +++++....+.+.+.|+.+ ...+.+++. ++|+||+++|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~-~~d~~~~~~~~~~~~g~~~---~~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVY-GYDHNELHLKKALELGLVD---EIVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEE-EEcCCHHHHHHHHHCCCCc---ccCCHHHHh-cCCEEEEeCcHH
Confidence 5899999999999999999998 75 444 4555555566777788752 134667765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CChhhHHHHhhcccccCCCceEEE
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
...+++.++.+ ++++++|+++++++....+..... ....||+.||+. |.....++|+ |..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 999999999887753222210011 125799999974 3333334544 478889
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++.++.+++..+.++.+++.+| .+++.+++++|
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~h 171 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEH 171 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHH
Confidence 9988888999999999999999 57777888877
No 18
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.76 E-value=5.3e-18 Score=166.53 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=117.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+ |+||+++|+.|++. .+++|+ +.++.. . ...++++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~d--------~-------~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPAD--------P-------GSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCCc--------c-------ccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 167764 555421 1 12367889999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 191 ~~~vl~ei~~~---lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
..++++++.++ ++++++|+|+++++-..++. ..+...+||+.|| +.|++...+ ++|.++++||..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999997533332 1233467999999 556553223 356899999874
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
+ .+.++.+++|++.+| .+++++|+++|=
T Consensus 132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD 159 (370)
T PRK08818 132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD 159 (370)
T ss_pred c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 4 456789999999999 678899999983
No 19
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.75 E-value=3.1e-17 Score=155.97 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=128.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.++|+.|++. |+ +|++++ ++.+..+.+.+.|... ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~d-r~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGAD-RSAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEE-CCHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 75 565444 4445566777777642 12357788899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
...++++++.+.++++.+|+++++++...++.....++++++|+..||.. +.+. ..+..+....+.|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~-g~e~-~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLA-GTEH-SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCC-CCcc-cchhhcCHHHHCCCeEEEeCCCCC
Confidence 88888899989999999999999886433332112445677899999954 2211 011112222223578999998888
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++++++.++.+++.+|. +++.++.++|
T Consensus 156 ~~~~~~~~~~l~~~lG~-~~~~~~~~~h 182 (307)
T PRK07502 156 DPAAVARLTAFWRALGA-RVEEMDPEHH 182 (307)
T ss_pred CHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 89999999999999995 5666777776
No 20
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=3.3e-17 Score=152.07 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++|+|||+|+||.++++.|.+. | .+|.++.|+. +..+...+ .|+.. ..+.+++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~-~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSP-EKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCH-HHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 37899999999999999999988 7 5666666543 33444444 36542 457788899999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|++...++++++.+++ +..+|.+++|+....++. .++.+.++++.|||.|... + .|.+ .+++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~~-~i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGMT-ALTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----CceE-EEecC
Confidence 9999999999988877 334556889998777665 5565678999999987543 2 3444 47788
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
.+.++++.+.++.||+.+|...++ .- ++.|+..+.+.|
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~--~~-----e~~~d~~~a~~~ 171 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWV--DD-----EKQMDAVTAVSG 171 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEE--CC-----hHhcchHHHHhc
Confidence 888999999999999999953333 21 335566666665
No 21
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.75 E-value=1.1e-17 Score=156.28 Aligned_cols=160 Identities=20% Similarity=0.214 Sum_probs=118.4
Q ss_pred HHHHHHhhhhhhcCC--ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCC
Q 021114 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (317)
Q Consensus 126 iA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk 203 (317)
+|+.|++. | .+ +++.+++....+.|++.|+.++ ..+..+.++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 7 44 4677777888889999999852 22336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHH
Q 021114 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (317)
Q Consensus 204 ~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~a 283 (317)
+|++|+|++|++....+.....+|.+.+||++|| +.|++ +..|+..+...++|.++++||..+.+.++++.++++|+.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999964322221125567899999999 55765 334444556666789999999999989999999999999
Q ss_pred cCCCcEEecCchhhh
Q 021114 284 LGSPFTFATTLEQEY 298 (317)
Q Consensus 284 lG~~~~~~tT~~~e~ 298 (317)
+|+ +++.+|+++|=
T Consensus 149 ~Ga-~~~~~~~eeHD 162 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHD 162 (258)
T ss_dssp CT--EEEE--HHHHH
T ss_pred CCC-EEEEcCHHHHH
Confidence 996 78889999984
No 22
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.73 E-value=7.6e-17 Score=147.47 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=117.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc---e-EEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~---~-Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+||+|||+|+||.+++.+|.+. |. + +++..|++.+..+ .+.+.++.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 52 3 4445554433333 333456543 457889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|++.+.++++++.+++++..+|.+++|+.+..++. .++.+..++++|||.+... | .|.+. ++..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-EeeC
Confidence 99999999999888776433445889999888876 5666678999999997644 3 56777 4566
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 267 QDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+.+++..+.++++++.+|...++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 678899999999999999976654
No 23
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.73 E-value=7.1e-17 Score=161.54 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=129.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+|+||| +|+||+++|+.|++. |++|++..++.+...+.+.+.|+.. ..+.+++++++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899998 899999999999999 9988776665443335666677653 4578889999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
..++++++.+.++++++|+|+++++. ..+.. .++++..||+.||.. |+.. .+| .|..++++|..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 88899999999999999999998643 33333 456678999999942 3331 122 34688899998
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
+.+++..+.++++|+.+| .+++.+++++|
T Consensus 138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~H 166 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEH 166 (437)
T ss_pred CCCHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 888999999999999999 56678899988
No 24
>PRK07680 late competence protein ComER; Validated
Probab=99.71 E-value=1.3e-16 Score=149.27 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=120.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHH-C-CceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~-~-G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|+|||+|+||.+++++|.+. |. +|.+..|+. +..+...+ . |+.. ..+..++++++|+||++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~-~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVila 69 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTP-AKAYHIKERYPGIHV----AKTIEEVISQSDLIFIC 69 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCH-HHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEe
Confidence 5799999999999999999988 73 566555543 33333332 2 5543 45788889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+|++...++++++.++++++++|+ .++|+.+..++. .++ ..++++|||++... + .|.+. ++
T Consensus 70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~ 131 (273)
T PRK07680 70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FT 131 (273)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Ee
Confidence 999998899999999998888877 556788777765 444 36899999977433 2 34554 45
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
...+.+++..+.++.++..+|....+ .+|++...+.|.|
T Consensus 132 ~g~~~~~~~~~~~~~ll~~~G~~~~i--------~e~~~~~~~~l~g 170 (273)
T PRK07680 132 FGSRCSEEDQQKLERLFSNISTPLVI--------EEDITRVSSDIVS 170 (273)
T ss_pred eCCCCCHHHHHHHHHHHHcCCCEEEE--------ChHhcchhhhhcc
Confidence 55667788889999999999954444 4566666566655
No 25
>PLN02712 arogenate dehydrogenase
Probab=99.68 E-value=5.2e-16 Score=162.59 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=123.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVI 183 (317)
..++++ ++|||||+|+||+++|++|++. |++|+++++. .. .+.+.+.|+.. ..+.++++. ++|+||
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~-~~-~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRS-DY-SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECC-hH-HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 355677 9999999999999999999998 9888766555 32 25566778753 457888775 599999
Q ss_pred EccCCchHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~-~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
+|+|+....++++++.. .+++|++|+|+++++ +..++. .++.+.+||+.||+.....-+..|.. ....+++.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~ 506 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV 506 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence 99999888889998765 689999999998774 334333 56777899999996643321112221 11122222
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
. ...+....+.++.++++|..+| .+++++|+++|-
T Consensus 507 ~---v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD 541 (667)
T PLN02712 507 R---IGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD 541 (667)
T ss_pred E---eCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 1 1222333456677789999999 688899999995
No 26
>PLN02712 arogenate dehydrogenase
Probab=99.65 E-value=2.6e-15 Score=157.40 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=121.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
++|||||+|+||+++|++|++. |++|+++.+. . ..+.+.+.|+.. ..+.++++ +++|+|++|+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~-~-~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRS-D-HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-H-HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8899999999999999999999 9887665554 2 235677788764 45778855 57999999999998
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhH-HHHhhcccccCCCceEEEEe
Q 021114 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 191 ~~~vl~ei~-~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r-~lf~~G~e~~g~G~~~iitp 265 (317)
..++++++. ++++++++|+|+++++.. .++. .+|++..||+.||+. |++.. ..+ .+..++|++
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~~~~g~--------~~~~~~~~~ 188 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQSAKHGW--------DGLRFVYEK 188 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCccccchh--------ccCcEEEee
Confidence 888999875 779999999999988642 2333 557778999999954 55421 122 234566663
Q ss_pred ----ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 266 ----HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 266 ----~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
++....+.++.++++|+.+| .+++++|+++|-+
T Consensus 189 ~~~~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~ 225 (667)
T PLN02712 189 VRIGNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK 225 (667)
T ss_pred ccCCCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence 33333456777889999999 6888899999843
No 27
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.63 E-value=3.9e-15 Score=146.20 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=111.1
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 110 GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
.+++|+||| +|+||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99887666531 11566788999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
....++++++.+ +++|++|+|+++++...........+ ..||+.||.. |++. ..| .|..+++ .+.
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~-G~~~-~~~--------~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMF-GPDV-GSL--------AKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCC-CCCC-ccc--------CCCEEEE--cCC
Confidence 999899999888 99999999999975322221111222 2699999944 3331 111 2344544 334
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.++++++.++.+++.+| .+++.+++++|=
T Consensus 218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD 246 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHD 246 (374)
T ss_pred CCchHHHHHHHHHHHCC-CEEEECCHHHHH
Confidence 55788999999999999 678889999884
No 28
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=3.1e-15 Score=138.85 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=104.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+|||||+|+||.+++++|++. |+. +.+++|+.++..+.+.+. |... ..+++++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 653 344444433222223333 3432 4688889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|+...++++++ . ++++++|+ +++|+++..++. .++...++++.|||+|... + .|.+. +++.
T Consensus 71 p~~~~~vl~~l-~-~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~ 132 (258)
T PRK06476 71 PQIAEEVLRAL-R-FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP 132 (258)
T ss_pred HHHHHHHHHHh-c-cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence 98888888876 2 56777765 778888888876 5555678999999988765 3 45666 3332
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcE
Q 021114 267 QDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+.++.+|+.+|...+
T Consensus 133 -------~~~~~~l~~~lG~~~~ 148 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE 148 (258)
T ss_pred -------HHHHHHHHHhcCCcEE
Confidence 2578999999996654
No 29
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.63 E-value=8.9e-15 Score=154.01 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=124.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.++++.|++. |+ +|+++ +++.+..+.+.+.|+.. ....+.+++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~-d~~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAV-DRRAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEE-ECChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 84 55554 44445566777788752 12457888899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCC-CccEEEeccCCCChh-------hHHHHhhcccccCCC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG 258 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~-~i~vV~vhPn~pg~~-------~r~lf~~G~e~~g~G 258 (317)
...++++++.++++++++|+|++|++ +..++. .++. .++|+..||.. +.+ ...+|. +
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~-G~~~~g~~~a~~~l~~--------~ 142 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIA-GSEKSGVHAANADLFR--------N 142 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcC-cCCcchhhhhhhHHhC--------C
Confidence 88889999999999999999999987 444443 3332 35677777732 222 223444 4
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
.++++++..+.+++..+.+++|++.+|. +++.++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~~~~~h 180 (735)
T PRK14806 143 HKVILTPLAETDPAALARVDRLWRAVGA-DVLHMDVAHH 180 (735)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 6888999999999999999999999994 5666666655
No 30
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.61 E-value=3.6e-15 Score=144.31 Aligned_cols=157 Identities=21% Similarity=0.229 Sum_probs=118.7
Q ss_pred ccccchhhhhhcCCCcc-cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..|+.. +|+|+|+. .....+|.| ||+||||+|.||+.+|+.|+.+ |++|+.+++...+. .+...+..
T Consensus 117 ~~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~ 186 (324)
T COG0111 117 RIPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV 186 (324)
T ss_pred CchhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence 57788888 79999976 234569999 9999999999999999999999 99987655533322 23334444
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..++++++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-. +..++ .+.+....++|..
T Consensus 187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~-~G~i~gA~lDVf~ 261 (324)
T COG0111 187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD-SGKIAGAALDVFE 261 (324)
T ss_pred e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH-cCCcceEEecCCC
Confidence 2 4689999999999999999999886 776 8999999999999654 542 23333 3444445788999
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|..+.+. ++.. -|.++|||-
T Consensus 262 ~EPl~~~~p---L~~~--------pnV~~TPHi 283 (324)
T COG0111 262 EEPLPADSP---LWDL--------PNVILTPHI 283 (324)
T ss_pred CCCCCCCCh---hhcC--------CCeEECCcc
Confidence 999776643 4443 578889987
No 31
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=140.74 Aligned_cols=168 Identities=23% Similarity=0.243 Sum_probs=121.0
Q ss_pred ccccchhhhhhcCCCccc-----ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (317)
++..+++. +|.|.|... +...+++| |++||||+|.||+++|+.++.+ |++|+++.++.. .+...+
T Consensus 117 ~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~ 186 (324)
T COG1052 117 RIHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE 186 (324)
T ss_pred chHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence 57778888 999999765 34568999 9999999999999999999988 999877776643 222333
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~i 230 (317)
.++. ..+++|++++||+|+|++|.+..+. +++ +.++.||+|++|+-+ -|-. +..++ .+.......
T Consensus 187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~-~g~i~gagl 260 (324)
T COG1052 187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK-SGKIAGAGL 260 (324)
T ss_pred cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-hCCcceEEe
Confidence 3344 4469999999999999999999986 776 899999999999954 4642 23333 344444578
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
+|.--+|........++-.. -+.+++||. ..+.++++.
T Consensus 261 DV~e~Ep~~~d~~l~~l~~~--------~~vvltPHia~at~ea~~~ 299 (324)
T COG1052 261 DVFENEPALFDHPLLRLDNF--------PNVVLTPHIASATEEARKA 299 (324)
T ss_pred eecCCCCCCCChhHhhccCC--------CCEEEccccccccHHHHHH
Confidence 89989996543332211111 348899988 334444433
No 32
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.57 E-value=2.5e-15 Score=132.91 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=108.4
Q ss_pred cccchhhhhhcCCC--cccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w--~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|+| .......++.| ++|||||+|.||..+|+.|+.+ |++|+++++... ........++.
T Consensus 11 ~~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~ 81 (178)
T PF02826_consen 11 LPEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE 81 (178)
T ss_dssp HHHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE
T ss_pred HHHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce
Confidence 5566777 899999 22346789999 9999999999999999999999 999876666543 22234556775
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~ 234 (317)
..+++|++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-.+ ..+++ +.......+|..
T Consensus 82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 4699999999999999999998875 776 8999999999999654 5322 23332 222223456666
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|..+.+ .++.. -|.++|||-
T Consensus 156 ~EP~~~~~---~l~~~--------~nvi~TPH~ 177 (178)
T PF02826_consen 156 PEPLPADS---PLWDL--------PNVILTPHI 177 (178)
T ss_dssp SSSSSTTH---HHHTS--------TTEEEESS-
T ss_pred CCCCCCCC---hHHcC--------CCEEEeCcc
Confidence 77755433 34443 578899873
No 33
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.56 E-value=7.2e-14 Score=131.31 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=116.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceec--------C-CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~~ 170 (317)
|++|+|||.|.||.++|..+... |++|++.+++ .+..+ ...+.|.... . ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999999 9988766544 33232 3334442110 0 0023
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+.+ .+++||+||+++|++.. .++++++.++++++++| ++++|+.+..+.+ .++...++++.||+.|.+..
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 554 47999999999998776 46889999999999998 5889988877765 34444589999999998873
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+.. +++...++++..+.++.+++.+|...+.
T Consensus 149 ---------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~pv~ 180 (282)
T PRK05808 149 ---------KLVE--IIRGLATSDATHEAVEALAKKIGKTPVE 180 (282)
T ss_pred ---------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 2232 6788999999999999999999976553
No 34
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.56 E-value=9.5e-14 Score=131.91 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=114.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~e~ 175 (317)
+++|+|||+|+||.++|..|... |++|++.++. .+..+.+.+ .|...+. ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999998 9988766554 333333322 1210000 013477788
Q ss_pred cCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 176 v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+++||+||+++|++.. ..++.++.+.++++++| +.++|..+..+.+ .++...+|++.||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 9999999999999863 45888888888888877 4788887776665 4445568999999998754 2
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
. -..+++..+++++.++.+..+++.+|...+
T Consensus 146 ----~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v 176 (311)
T PRK06130 146 ----P--LVEVVRGDKTSPQTVATTMALLRSIGKRPV 176 (311)
T ss_pred ----c--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1 234667888899999999999999996544
No 35
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.55 E-value=2.5e-14 Score=137.44 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=115.1
Q ss_pred cccchhhhhhcCCCcccc-------cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH
Q 021114 86 LANRDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~-------~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (317)
+..+++. +|+|+|.... ...+|.| +++||||+|.||+.+|+.++.+ |++|+++++.... .
T Consensus 115 ~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~ 181 (311)
T PRK08410 115 INYYDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K 181 (311)
T ss_pred HHHHHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence 5556666 8999996421 2468999 9999999999999999999988 9998665543211 1
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCC
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKN 229 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~ 229 (317)
..++. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++-+ .|-. +..++ .+... ..
T Consensus 182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~-~g~i~-Aa 254 (311)
T PRK08410 182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD-EKDIY-AG 254 (311)
T ss_pred ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-cCCeE-EE
Confidence 23443 4589999999999999999999876 776 799999999999954 4542 23333 23333 55
Q ss_pred ccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
.+|...+|..+.+.. +..- .=-|+++|||- ..+.++.+.+
T Consensus 255 LDV~~~EP~~~~~pL---~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 255 LDVLEKEPMEKNHPL---LSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred EecCCCCCCCCCChh---hccC-----CCCCEEECCccccCCHHHHHHH
Confidence 778888886544432 2210 00379999986 3455555544
No 36
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.55 E-value=4.4e-14 Score=136.54 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=115.4
Q ss_pred ccccchhhhhhcCCCccc----ccccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (317)
++..+++. +|+|+|... +...+|.| +++||||+|.||..+|+.++ .+ |++|++..+... .+....
T Consensus 117 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~ 186 (323)
T PRK15409 117 RVVEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEER 186 (323)
T ss_pred CHHHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHh
Confidence 35566767 899999642 12468999 99999999999999999998 77 999875554322 122234
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~i 230 (317)
.|.. ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++++.+ .|-. +..++ .+.......
T Consensus 187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~-~g~i~gAaL 260 (323)
T PRK15409 187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ-KGEIHAAGL 260 (323)
T ss_pred cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEEe
Confidence 4554 4589999999999999999999886 776 799999999999955 4542 23333 233333457
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
+|...+|..+.+. ++.. -|+++|||- ..+.++.+
T Consensus 261 DVf~~EP~~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 261 DVFEQEPLSVDSP---LLSL--------PNVVAVPHIGSATHETRY 295 (323)
T ss_pred ecCCCCCCCCCch---hhcC--------CCEEEcCcCCCCcHHHHH
Confidence 7888888543332 3332 589999986 33444443
No 37
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.54 E-value=5e-14 Score=122.72 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|||||+|+||.+||++|.+. |++|.++++. .+..+...+.|... ..++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 58999999999999999999999 9998777655 44566677778775 6799999999999999999977
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~-~vl~e--i~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+. +++.+ +++.+++|++++|++.......++....+ ..++.||-.-=.+ ++. .-+.| .-. +...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~~---~a~~g-------~l~-~~~g 137 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GPP---GAEEG-------TLT-IMVG 137 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HHH---HHHHT-------TEE-EEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-ccc---ccccc-------ceE-EEcc
Confidence 65 58887 99999999999999876432211100121 3456666421111 111 11123 323 3344
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021114 267 QDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~ 287 (317)
.+ .++.+.++.+++.+|..
T Consensus 138 G~--~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 138 GD--EEAFERVRPLLEAMGKN 156 (163)
T ss_dssp S---HHHHHHHHHHHHHHEEE
T ss_pred CC--HHHHHHHHHHHHHHhCC
Confidence 43 68999999999999953
No 38
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.54 E-value=4.8e-14 Score=135.70 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=116.1
Q ss_pred ccccchhhhhhcCCCccc-------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A 157 (317)
++..+++. +++|+|... .+..+|.| +++||||+|.||..+|+.++.+ |++|++..+.... .
T Consensus 116 ~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~ 183 (314)
T PRK06932 116 SLMGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V 183 (314)
T ss_pred ChHHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence 35566766 889999532 13468999 9999999999999999999988 9998655432211 0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCC
Q 021114 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPK 228 (317)
Q Consensus 158 ~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~ 228 (317)
...+ ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.+ .|-. +..++ .+.....
T Consensus 184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~-~g~i~gA 255 (314)
T PRK06932 184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE-NGKIAGA 255 (314)
T ss_pred cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-cCCccEE
Confidence 0111 3489999999999999999999886 776 899999999999954 4642 23333 3334345
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHHHH
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG 279 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a~~ 279 (317)
..+|...+|..+.+...+.+.+- -|+++|||-- .+.++.+....
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHHH
Confidence 67888889965544332211111 4789999863 44555555433
No 39
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.53 E-value=5.2e-14 Score=136.39 Aligned_cols=156 Identities=24% Similarity=0.281 Sum_probs=111.5
Q ss_pred ccccchhhhhhcCCCccc--------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH
Q 021114 85 SLANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~ 156 (317)
++..+++. +|+|+|... ....+|.| ++|||||+|+||.++|+.|+.+ |++|+++++.... ..
T Consensus 118 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~ 187 (333)
T PRK13243 118 RLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EA 187 (333)
T ss_pred CHHHHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hh
Confidence 35566766 899999632 12368999 9999999999999999999999 9998765554322 22
Q ss_pred HHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCC
Q 021114 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFP 227 (317)
Q Consensus 157 A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~ 227 (317)
..+.|+. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++++.++ |-. +..++ .+.+..
T Consensus 188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~-~g~i~g 261 (333)
T PRK13243 188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK-EGWIAG 261 (333)
T ss_pred HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH-cCCeEE
Confidence 3344554 3589999999999999999998875 665 8999999999999664 432 12222 233323
Q ss_pred CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...+|...+|.. .+ .++.. -|+++|||--
T Consensus 262 AaLDV~~~EP~~-~~---pL~~~--------~nvilTPHia 290 (333)
T PRK13243 262 AGLDVFEEEPYY-NE---ELFSL--------KNVVLAPHIG 290 (333)
T ss_pred EEeccCCCCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence 457888888853 22 23432 4789999874
No 40
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.53 E-value=5.8e-14 Score=134.69 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=110.3
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+..+++. +++|+|... ...+|.| ++|||||+|+||..+|+.|+.+ |++|+++++...+ .|+..
T Consensus 100 i~~~~~~-~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~- 162 (303)
T PRK06436 100 ICENNYN-MKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS- 162 (303)
T ss_pred hHHHHHH-HHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence 4455656 899999754 4579999 9999999999999999999988 9998766654221 23321
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~vh 236 (317)
...+++|++++||+|++++|.++.++ +++ +.+..||+|++++.++ |-.+ ..+++ +.......+|...+
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E 239 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE 239 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence 13489999999999999999999876 666 7899999999999654 4321 22222 22222245777778
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEecc--CCCHHHHHH
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~--d~~~ea~e~ 276 (317)
|..+... --|+++|||- ..+.+..+.
T Consensus 240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence 8543321 1478999993 355654443
No 41
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.53 E-value=2.5e-13 Score=128.47 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=114.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~~~~~ 171 (317)
+++|+|||+|.||.++|+.|... |++|++.+++.+ ..+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPA-ALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 47899999999999999999999 998876665432 2221 222231100 001223
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
..+++++||+||+++|..... .++.++.+.++++++|+ +++|+.+..+.+ .+....+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 346789999999999966654 47888888999999886 889988877765 3344468999999877654
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ ....+++...++++..+.++.+++.+|...++
T Consensus 149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVVC 181 (295)
T ss_pred --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 2 23457788889999999999999999976554
No 42
>PRK07574 formate dehydrogenase; Provisional
Probab=99.52 E-value=1.6e-13 Score=135.68 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=118.0
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++... ..+...+.|
T Consensus 165 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g 235 (385)
T PRK07574 165 NYEPSHRQ-AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG 235 (385)
T ss_pred CHHHHHHH-HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence 45556666 889999642 23578999 9999999999999999999999 999876665432 223333456
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++++.++ |-.+ ..++ .+.+.....+|
T Consensus 236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~-sG~i~GAaLDV 310 (385)
T PRK07574 236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE-SGHLAGYAGDV 310 (385)
T ss_pred cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH-hCCccEEEEec
Confidence 542 4589999999999999999999876 776 7999999999999654 5322 2333 23333345777
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
...+|..+.+. ++.. -|+++|||- ..+.++.+.
T Consensus 311 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 311 WFPQPAPADHP---WRTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CCCCCCCCCCh---HHhC--------CCeEECCccccCcHHHHHH
Confidence 77888544433 2222 478899986 344555543
No 43
>PLN03139 formate dehydrogenase; Provisional
Probab=99.50 E-value=2.9e-13 Score=133.85 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.. ...+...+.|
T Consensus 172 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g 242 (386)
T PLN03139 172 NFLPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG 242 (386)
T ss_pred CcHHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence 45566766 889999632 23478999 9999999999999999999998 99987655432 2223334456
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.++.++ +++ ++++.||+|++|+.++ |-.+ ..++ .+.+.....+|
T Consensus 243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~-sG~l~GAaLDV 317 (386)
T PLN03139 243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS-SGHIGGYGGDV 317 (386)
T ss_pred cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH-cCCceEEEEcC
Confidence 542 3589999999999999999999876 776 7999999999999764 5322 2333 23333345777
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e 275 (317)
...+|..+.+.. +.. -|.++|||-- .+.++.+
T Consensus 318 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 318 WYPQPAPKDHPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred CCCCCCCCCChh---hcC--------CCeEEcccccccCHHHHH
Confidence 778886554432 222 4788999873 3444444
No 44
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.49 E-value=3.4e-13 Score=128.51 Aligned_cols=149 Identities=22% Similarity=0.226 Sum_probs=108.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|+||.+||++|.+. |+++.+++|+.++..+.+++.|... ..++.|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999988777677788889875 67889999999999999999998
Q ss_pred HH-HHH---HHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEecc---CCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 AD-NYE---KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCP---KGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 ~~-vl~---ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhP---n~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
.+ ++. .+.+.+|+|++++|++.+....-++.-..+ ..+..++- .| -.++.. .| . ..|
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A~------~G-------t-Lti 135 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGAA------AG-------T-LTI 135 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhhh------hC-------c-eEE
Confidence 75 663 699999999999999877431111000011 12444442 12 111111 22 2 324
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
-+..+ +++.++++-+++.+|..
T Consensus 136 mvGG~--~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 136 MVGGD--AEAFERAKPVLEAMGKN 157 (286)
T ss_pred EeCCC--HHHHHHHHHHHHHhcCc
Confidence 44444 78999999999999954
No 45
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.49 E-value=2e-13 Score=127.45 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=136.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++||||.|+|..++++++... |+ +++... ...++... .+..|+.. ..+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~-~~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASV-QTERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeec-CchhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 76 333333 33444444 67778764 445589999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
+|..+.+++.++.+.+..+++|+ ...|+++..++. .++...++||+|||+|... | +|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence 99999999999888777888766 889999988876 6667789999999999876 4 78885 888
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
..+++.+..+.++.++..+|.. .|+.+|+++.-|=|.|.
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGS 172 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGS 172 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCC
Confidence 8899999999999999999944 35689999999988885
No 46
>PLN02928 oxidoreductase family protein
Probab=99.47 E-value=3e-13 Score=131.85 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=113.9
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH--H----
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A---- 159 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~---- 159 (317)
+..+++. +++|+|... ...+|.| ++|||||+|.||..+|+.|+.+ |++|+++++...+...... .
T Consensus 137 ~~~~~~~-~~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~ 207 (347)
T PLN02928 137 QNEMQIS-LKARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDV 207 (347)
T ss_pred HHHHHHH-HHcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccc
Confidence 3445555 788999643 2368999 9999999999999999999998 9998766554221111100 0
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i 230 (317)
..+..+.....+++|++++||+|++++|.+..++ +++ +.+..||+|++|+.++ |-. +..++ .+.......
T Consensus 208 ~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~-~g~i~gAaL 286 (347)
T PLN02928 208 DDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE-SGHLGGLAI 286 (347)
T ss_pred cccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEEE
Confidence 0000000124589999999999999999998876 776 8999999999999654 532 22333 233333467
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
+|...+|..+.+. ++.. -|+++|||-- .+.+..+..
T Consensus 287 DV~~~EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~~ 323 (347)
T PLN02928 287 DVAWSEPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRSM 323 (347)
T ss_pred ccCCCCCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHHH
Confidence 8888888654433 3332 5889999963 344444443
No 47
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.47 E-value=2.6e-13 Score=130.68 Aligned_cols=162 Identities=20% Similarity=0.162 Sum_probs=113.2
Q ss_pred cccchhhhhhcCCCccc-------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH
Q 021114 86 LANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (317)
+..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.++.+ |++|+++.+....
T Consensus 118 ~~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------ 183 (317)
T PRK06487 118 LPDYQQA-VAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHHHH-HHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence 4556666 899999642 12468999 9999999999999999999988 9998655543211
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCC
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKN 229 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~ 229 (317)
.... ..+++|++++||+|++++|.+..++ +++ +.++.||+|++++-+ .|-. +..++ .+......
T Consensus 184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~-~g~i~gAa 256 (317)
T PRK06487 184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR-SGHLGGAA 256 (317)
T ss_pred -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEE
Confidence 1111 3489999999999999999999886 776 899999999999955 4532 23333 33343446
Q ss_pred ccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
++|...+|..+.+. ++... =-|+++|||-- .+.+..+.+
T Consensus 257 LDVf~~EP~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 257 TDVLSVEPPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred eecCCCCCCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence 78888888654332 33200 14788999863 344544443
No 48
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.46 E-value=7.4e-13 Score=122.88 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=110.8
Q ss_pred ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchhhhh
Q 021114 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHL 219 (317)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~ 219 (317)
.+++++.|+.++..+.+.+.|+.. ..++.++++++|+|||++||+...++++++.+.++++++|+ .++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 357777765444334445567653 46788899999999999999999999999988777666655 8899999888
Q ss_pred hhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 220 QSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 220 ~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
+. .++.+.+++|+|||+|... | +|++. +++.++++++..+.++.||..+|...++ .
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~~v--------~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVGEVVEL--------P 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCCCEEEE--------C
Confidence 76 6666668999999998766 3 56777 6788888899999999999999966655 4
Q ss_pred ccchhhhhhhcC
Q 021114 300 SDIFGERGECFP 311 (317)
Q Consensus 300 ~dl~~e~~il~g 311 (317)
++.|.--|.|.|
T Consensus 142 E~~~~~~talsg 153 (245)
T TIGR00112 142 EALMDAVTALSG 153 (245)
T ss_pred HHHcchHHhhcc
Confidence 566666677754
No 49
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.45 E-value=1.7e-12 Score=131.92 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-------------------HCC-ceecCCCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~ 170 (317)
+++|+|||+|+||.++|.+|... |++|+++++..+. .+... ..| +.. ..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~ 72 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CA 72 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHhhhccchhhhhhceEe----eC
Confidence 47999999999999999999999 9999887765432 22111 112 221 45
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++++++||+|+.++|++... .++.++.+.++++++|. -++|+.+..+.+ .+...-.++..||+.|...
T Consensus 73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~---- 145 (495)
T PRK07531 73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL---- 145 (495)
T ss_pred CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc----
Confidence 8889999999999999999753 37778888888887664 556776666654 4444567999999988654
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ .-..+++...++++.++.++.+++.+|...+.
T Consensus 146 ---~-------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~ 178 (495)
T PRK07531 146 ---L-------PLVELVGGGKTSPETIRRAKEILREIGMKPVH 178 (495)
T ss_pred ---C-------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 2 23456778888899999999999999966543
No 50
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.45 E-value=8.6e-13 Score=127.89 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=106.6
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|+|.+. ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++.... .. ++.
T Consensus 121 ~~~~~~~-~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~-~~-----~~~ 186 (330)
T PRK12480 121 FPDIERR-VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNK-DL-----DFL 186 (330)
T ss_pred HHHHHHH-HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhH-hh-----hhh
Confidence 4555656 788876432 23478999 9999999999999999999998 9998766554321 11 111
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~vV~ 234 (317)
. ...++++++++||+|++++|.+..+. ++. ++++.||+|++|+.+ .|-.+ ..++ .+.......+|..
T Consensus 187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~-~g~i~gaalDV~~ 262 (330)
T PRK12480 187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN-DGTLLGAAIDTYE 262 (330)
T ss_pred h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH-cCCeeEEEEeccC
Confidence 1 13489999999999999999998764 565 799999999999955 46422 2333 2333234567777
Q ss_pred eccCC----------CChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
-+|.. ..+....|+.. -|+++|||-
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHi 297 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHI 297 (330)
T ss_pred CCCccccccccccccCchhhHHHhcC--------CCEEECCcc
Confidence 78841 11111235543 589999987
No 51
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.45 E-value=3.5e-13 Score=134.08 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=109.3
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +++|+|... ....+|.| +++||||+|.||..+|+.++.+ |++|+++++... ....++.
T Consensus 126 ~~~~~~~~-~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~ 192 (409)
T PRK11790 126 GIPEKNAK-AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNAR 192 (409)
T ss_pred ChHHHHHH-HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCce
Confidence 35556666 899999653 23478999 9999999999999999999998 999865554311 1112232
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..+++|++++||+|++++|.+..++ +++ +.+..||+|++|+.++ |-. +..+++ +.......+|..
T Consensus 193 ~----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~ 267 (409)
T PRK11790 193 Q----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFP 267 (409)
T ss_pred e----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCC
Confidence 1 3589999999999999999999876 776 7999999999999554 532 233332 333234567777
Q ss_pred eccCCCChhh-HHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSV-RRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~-r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|....... ..++.. -|++++||-
T Consensus 268 ~EP~~~~~~~~~pL~~~--------~nvilTPHi 293 (409)
T PRK11790 268 VEPKSNGDPFESPLRGL--------DNVILTPHI 293 (409)
T ss_pred CCCCCccccccchhhcC--------CCEEECCcC
Confidence 7875432111 123332 478999986
No 52
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.44 E-value=6.3e-13 Score=127.98 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=108.0
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+..+.+. .+.|+|... +..++.| ++|||||+|+||..+|+.|+.+ |++|+++.+.... . .++..
T Consensus 114 ~~~~~~~-~~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~- 177 (312)
T PRK15469 114 FDDYQAL-QNSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS- 177 (312)
T ss_pred hHHHHHH-HHhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence 4455555 788999743 3468999 9999999999999999999999 9998766553221 1 12211
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vh 236 (317)
.....++++++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.......+|...+
T Consensus 178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E 256 (312)
T PRK15469 178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE 256 (312)
T ss_pred ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence 0113588999999999999999999876 776 7999999999999654 542 223332 32323346777778
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
|..+.+. ++.. -|+++|||--
T Consensus 257 Pl~~~~p---l~~~--------~nvi~TPHia 277 (312)
T PRK15469 257 PLPPESP---LWQH--------PRVAITPHVA 277 (312)
T ss_pred CCCCCCh---hhcC--------CCeEECCcCC
Confidence 8543322 3332 5889999863
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=4.2e-12 Score=119.86 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=111.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~ 169 (317)
+++|+|||.|.||.++|..+... |++|+++++.. +..+.+.+. +...++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD-EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 47999999999999999999998 99987776543 223332211 111000 014
Q ss_pred CCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
.++++++++||+||.++|.+.. .++++++.+.++++++|+ ..++..+..+.+ .++...+|++.||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 5788899999999999997743 458889999999999886 445555545543 2333457999999776443
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
...+.+++...++++.++.+.++++.+|...+
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv 181 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPI 181 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 24566788899999999999999999996544
No 54
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=3.9e-12 Score=120.05 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=113.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (317)
+++|+|||+|.||.++|..|.+. |++|+++++. ++..+.+.+ .|...+. ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47999999999999999999999 9998776654 333333221 1111000 0135
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++++++||+||.|+|.+... .++.++.+.++++++| ++++.+.+..+.+ ......++++.|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 7888999999999999998764 4778888899999987 4777777666654 3333357889999755432
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+.-..+++...++++.++.++.+++.+|...+.
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~ 179 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKETVV 179 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 134557788888999999999999999965543
No 55
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.44 E-value=6.1e-13 Score=136.13 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=111.5
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +|+|+|... +...+|.| ++|||||+|.||+++|+.|+.+ |++|+++++.. ..+.+.+.|+..
T Consensus 114 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~ 183 (525)
T TIGR01327 114 IPQADAS-LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL 183 (525)
T ss_pred HHHHHHH-HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence 4556666 899999643 23478999 9999999999999999999999 99886655432 233455567652
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-. +..++ .+.......+|+..
T Consensus 184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~-~g~i~gAaLDVf~~ 258 (525)
T TIGR01327 184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE-EGHVRAAALDVFEK 258 (525)
T ss_pred ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH-cCCeeEEEEecCCC
Confidence 3489999999999999999998875 775 7889999999999664 432 22333 23333345777777
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
+|. +.+ .|+.. -|+++|||--
T Consensus 259 EP~-~~~---pL~~~--------~nvi~TPHia 279 (525)
T TIGR01327 259 EPP-TDN---PLFDL--------DNVIATPHLG 279 (525)
T ss_pred CCC-CCC---hhhcC--------CCeEECCCcc
Confidence 883 222 24432 5788888863
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.43 E-value=4.1e-13 Score=106.06 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=70.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCC---ceEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
||||||.|+||.+++++|.+. | .++.+. .|+.++..+.+.+.+... ...+..|+++++|+|||++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA---TADDNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE---ESEEHHHHHHHTSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc---ccCChHHhhccCCEEEEEECH
Confidence 799999999999999999999 8 788766 555444445567777543 123799999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+...++++++ +...++++|+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 9999999999 777788888743
No 57
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.43 E-value=2.6e-12 Score=116.97 Aligned_cols=158 Identities=17% Similarity=0.129 Sum_probs=108.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
|||+||| .|+||.++++.|.+. |++|+++.|..++..+.+.. .|+.. .....+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 6899997 999999999999999 99988876654332222221 12210 001236678899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEE-ecCchh-----------------hhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l-----------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
+++|++...++++++.+.++ +++|++ +.|+.. +.+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 99999999999988877775 477764 457654 22333 456547899999999876543
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCcE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~al-G~~~~ 289 (317)
. .....+...++ -.| ++++.+.+.+|.+.+ |+..+
T Consensus 150 ~------~~~~~~~~~~v--~Gd-d~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 150 D------VDDEVDCDVLV--CGD-DEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred C------CCCCCCCCEEE--ECC-CHHHHHHHHHHHHhcCCCCcc
Confidence 2 12223444433 333 356999999999999 98765
No 58
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.42 E-value=8.8e-13 Score=134.98 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=111.3
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++... .+.+...|+..
T Consensus 116 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~ 185 (526)
T PRK13581 116 IPQAHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL 185 (526)
T ss_pred HHHHHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE
Confidence 4556666 899999642 23468999 9999999999999999999999 999866554322 33445567653
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
.+++|++++||+|++|+|.++.++ +++ +.++.||+|++++.++ |-. +..++ .+.......+|+..
T Consensus 186 -----~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~-~g~i~gAaLDVf~~ 259 (526)
T PRK13581 186 -----VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK-SGKVAGAALDVFEK 259 (526)
T ss_pred -----EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh-cCCeeEEEEecCCC
Confidence 389999999999999999998875 775 8999999999999664 432 12232 23333345777778
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|. +.+ .|+.. -|+++|||-
T Consensus 260 EP~-~~~---pL~~~--------~nvilTPHi 279 (526)
T PRK13581 260 EPP-TDS---PLFEL--------PNVVVTPHL 279 (526)
T ss_pred CCC-CCc---hhhcC--------CCeeEcCcc
Confidence 883 222 24432 478889986
No 59
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.41 E-value=8.7e-12 Score=117.85 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=112.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (317)
+++|+|||.|.||.++|..+... |++|++.+++ ++..+.+. +.|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVS-EEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCC-HHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 9988766654 33333221 11221000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhh
Q 021114 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (317)
Q Consensus 168 ~~~~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~ 244 (317)
...+. +.+++||+||+++|++.. .++++++.+.++++++|+ .++|..+..+.. .+...-+|++.||..|.+.+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 578999999999999874 458888888899999876 567777766664 44445689999999988763
Q ss_pred HHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ +.. +.+...++++..+.+..+++.+|...+.
T Consensus 152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v~ 183 (291)
T PRK06035 152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPIE 183 (291)
T ss_pred ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 1 222 3488889999999999999999976543
No 60
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.40 E-value=4.3e-12 Score=123.13 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=119.4
Q ss_pred ccccchhhhhhcCCCcccc---cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~---~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++...+|. +++|+|.... ....+.| |+|||+|+|.||..+|++|+.+ |..+.+..|. +...+.+.+.+
T Consensus 135 ~~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 135 RFSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 58888888 9999993321 3589999 9999999999999999999999 9544444443 34445555555
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEE-EecCchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi-~~~Gv~l------~~~~~~~~~l~~~i~v 232 (317)
.. ..+.+|.+.++|+|++++|+++.+. +++ +.+.+||+|.+|+ .+-|-.+ ..+ ..+.....+.+|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL-~sG~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL-KSGKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH-hcCCcccccccc
Confidence 44 3489999999999999999999986 777 8999999999998 4446422 222 244555668889
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
.-.+| .+-+. ++. --|++++||- .++.+..+..
T Consensus 280 f~~EP-~~~~~---l~~--------~dnvv~~PHigs~t~~t~~~m 313 (336)
T KOG0069|consen 280 FEPEP-PVDHP---LLT--------LDNVVILPHIGSATLETREKM 313 (336)
T ss_pred cCCCC-CCCcc---hhc--------ccceeEecccccCcHHHHHHH
Confidence 98999 44333 222 2457788976 4444444433
No 61
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.37 E-value=1e-11 Score=118.18 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=106.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|||||+|+||.+||++|.+. |++|.++++.. + .+...+.|... ..+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99887776653 2 34455677764 56888999999999999999866
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 192 ~-~vl~---ei~~~lk~gaiVi~~~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
. +++. .+.+.+++|++|+|++.+.....++.. ..-..++.|+. +|-.-+.. ..+.| .-.++ ..
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~-~g 136 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEI---GAREG-------TLSIM-VG 136 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEE-Ec
Confidence 4 4663 367788999999999887543211100 11134677887 57333222 22233 32323 34
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 267 QDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
. +++..+.++.+++.+|...+.
T Consensus 137 G--~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 137 G--DEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred C--CHHHHHHHHHHHHHHcCCcEE
Confidence 4 378899999999999965443
No 62
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.37 E-value=2.7e-11 Score=114.39 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=110.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceec--------C-CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------~-~~~~ 170 (317)
+++|+|||.|.||.++|..|..+ |++|+++++.. +..+.+.+ .|...+ . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSA-DRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 37899999999999999999999 99988776553 33333221 232100 0 0124
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++ +.+++||+||.++|..... .+++++.+.++++++|+ .++++.+..+.+ .+....++++.|+-.|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 4578999999999987553 47789999999999886 788887766654 33334578999987766542
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+ . -+.+...++++.++.+..+++.+|...+.
T Consensus 150 --~~-------v--ei~~g~~t~~~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 150 --KL-------V--ELIRGIATDEATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred --ce-------E--EEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 11 2 35677788899999999999999976543
No 63
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.36 E-value=1.4e-11 Score=117.24 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=104.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e---~v~~ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|.+++++ .+..+...+.|... ..++++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHD-QDAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 9998776554 44455666667653 345555 44678999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
....++++++.+.+++|++|++++... ...... ..-..+++|+.....+..... + .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a----~-------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR----E-------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-e-eee
Confidence 976779999999999999999887652 111111 122356788875554422111 1 243 3 445
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021114 266 HQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~ 286 (317)
..+ +++.+.++.+++.+|.
T Consensus 135 gG~--~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GGD--GEAFARAEPLFADVAP 153 (298)
T ss_pred CCC--HHHHHHHHHHHHHhcC
Confidence 554 7899999999999996
No 64
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.35 E-value=7.2e-12 Score=121.42 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=92.8
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHH-HhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+..+++. +++|.|.+. ....+|.| ++|||||+|+||.++|+.| +.+ |++|+..++..... ...++
T Consensus 121 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~ 188 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYV 188 (332)
T ss_pred hHHHHHH-HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhc
Confidence 4445556 788877432 22468999 9999999999999999999 556 88876554432211 11222
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV 233 (317)
.. ..++++++++||+|++++|.+..++ +++ +.++.||+|++|++++ |..+ ..+++ +.......+|.
T Consensus 189 ~~----~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~ 263 (332)
T PRK08605 189 DY----KDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY 263 (332)
T ss_pred cc----cCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence 21 3489999999999999999999887 444 7889999999999654 5422 22222 22223346777
Q ss_pred Eecc
Q 021114 234 AVCP 237 (317)
Q Consensus 234 ~vhP 237 (317)
..+|
T Consensus 264 ~~Ep 267 (332)
T PRK08605 264 EFER 267 (332)
T ss_pred cCCC
Confidence 7776
No 65
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.34 E-value=1.6e-11 Score=111.30 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=95.1
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||. |.||..++..++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98863 257999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhhcccccCCCceEEEEeccC
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
..++++++. .+|+|++|++....+. ..+||+.||+. |++ ..++| .+++++ .++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMf-Gp~~a~~~lf----------~~~iv~-~~~ 98 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHPLF-GPMSYNDGVH----------RTVIFI-NDI 98 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCCCC-CCCcCccccc----------ceEEEE-CCC
Confidence 999888764 3788999998633221 34799999943 533 22222 356665 556
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.++++++.++++|+ | .+++++|+++|=
T Consensus 99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD 125 (197)
T PRK06444 99 SRDNYLNEINEMFR--G-YHFVEMTADEHD 125 (197)
T ss_pred CCHHHHHHHHHHHc--C-CEEEEeCHHHHH
Confidence 77888999999998 6 689999999994
No 66
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.34 E-value=4e-11 Score=114.41 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
|++|+|||.|.||.++|..|.+. |++|+++++..+ ..+. ..+.|..+.. ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999887766532 2232 2244542100 1245
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+++++++++|+|+.++|.... ..++.++.+..+++.++. -+++.....+.+ .++....++..||-.|...+
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 888899999999999998753 346777766666665553 223334444544 34445679999997664331
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.-..+++....+++.++.++.+++.+|...+
T Consensus 149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v 179 (308)
T PRK06129 149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQSPV 179 (308)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1234778888899999999999999995544
No 67
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.34 E-value=8.2e-12 Score=120.64 Aligned_cols=175 Identities=20% Similarity=0.169 Sum_probs=128.9
Q ss_pred ccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 87 ANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 87 ~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
....-. ++.|+|... +...+|.| |++||||+|.||.-+|..++.. |++++.++.-. ..+++.+.|+.
T Consensus 123 ~~A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~--~~~~~~a~gvq-- 190 (406)
T KOG0068|consen 123 GQASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPIT--PMALAEAFGVQ-- 190 (406)
T ss_pred chhhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCC--chHHHHhccce--
Confidence 333434 899999664 46799999 9999999999999999999999 99876555543 34677788887
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cC-c-----hhhhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HG-F-----LLGHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~G-v-----~l~~~~~~~~~l~~~i~vV~vh 236 (317)
..+++|+++.||+|-||+|..+.++ +++ +.+..||+|.-|+.+ .| + .+..++ .+..-+..++|...+
T Consensus 191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~-sG~vaGaAlDVy~~E 266 (406)
T KOG0068|consen 191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD-SGQVAGAALDVYPEE 266 (406)
T ss_pred ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh-cCcccceeeecccCC
Confidence 5799999999999999999999876 776 789999999999854 34 3 123333 344445578899999
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccCCC-HH-----HHHHHHHHHHHcCC
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS 286 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~-~e-----a~e~a~~l~~alG~ 286 (317)
|...+.. ++|-.. -|.+.|||...+ .| +.|.++++...+..
T Consensus 267 pp~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 267 PPKNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred CCccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 9665432 334433 578899998543 33 34555666666654
No 68
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.33 E-value=2.2e-11 Score=115.90 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=102.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~---ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+++|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVN-QEAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 5899999999999999999999 9998776655 34445566677664 5688888876 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 189 ~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.. ..++++++.+.+++|++|++++.... ..+.+ ..-..++.|+. +|-.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 84 45688899999999999999876632 12211 11123566653 33121111 001 234 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021114 265 VHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~ 286 (317)
+..+ +++.+.++.+++.+|.
T Consensus 135 ~gG~--~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGGD--KEIYDRLEPVFKALAP 154 (299)
T ss_pred ecCC--HHHHHHHHHHHHHhcC
Confidence 5554 6789999999999997
No 69
>PLN02306 hydroxypyruvate reductase
Probab=99.33 E-value=9e-12 Score=123.30 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHH-HH
Q 021114 85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR 158 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-A~ 158 (317)
++..+++. +++|+|. +. ....+|.| ++|||||+|.||..+|+.++ .+ |++|+++++......+. ..
T Consensus 137 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 137 RIVEADEF-MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred ChHHHHHH-HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence 35556666 8888884 21 12368999 99999999999999999985 67 99986555432211111 01
Q ss_pred HCCc-------eecC-CCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhh
Q 021114 159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQS 221 (317)
Q Consensus 159 ~~G~-------~~~~-~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~ 221 (317)
..|. ...+ ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.+ .|-. +..+++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 1221 0000 012489999999999999999998876 776 899999999999955 4532 233332
Q ss_pred cccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 222 ~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
+.......+|...+|.. .. .++.. -|+++|||- ..+.+..+
T Consensus 289 -g~i~gAaLDVf~~EP~~-~~---~L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 289 -NPMFRVGLDVFEDEPYM-KP---GLADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred -CCeeEEEEeCCCCCCCC-cc---hHhhC--------CCEEECCccccCcHHHHH
Confidence 33333457777788842 22 24433 589999986 33444433
No 70
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.33 E-value=3.1e-12 Score=108.60 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||.|++|.++++.|.+. |+.|...+.++..+.+++.+. .. .....+++|+++++|+|+|++||+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7999999999999999999999 998654444433444444332 11 12245788999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 021114 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (317)
Q Consensus 192 ~~vl~ei~~~--lk~gaiVi~~~Gv~-l~~~~~~~~~l~~~i~vV~vhP 237 (317)
.++.+++... .++|++|++++|-. ...++. .-..+..+...||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999863 333331 1123556677777
No 71
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.32 E-value=2e-11 Score=115.13 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=104.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~ 192 (317)
+|||||+|+||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+.++++++||+||+++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 9998766655 44456666777653 458889999999999999998765
Q ss_pred H-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 193 ~-vl---~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+ ++ +.+.+.+++|++|++++..... .+.+ .+ ..+++|+. +|- .+... ... +|... +.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~-------~g~l~-i~ 134 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAI-------EGTLS-IM 134 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHh-------cCCEE-EE
Confidence 4 54 3477888999999988766432 2222 22 23677777 573 22221 111 12333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. ++++.+.++.+++.+|...+
T Consensus 135 ~gg--~~~~~~~~~~ll~~lg~~~~ 157 (291)
T TIGR01505 135 VGG--DQAVFDRVKPLFEALGKNIV 157 (291)
T ss_pred ecC--CHHHHHHHHHHHHHhcCCeE
Confidence 443 37899999999999995443
No 72
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.31 E-value=2.6e-11 Score=114.85 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~~~~~~~~~e~v 176 (317)
||+|+|||+|.||.++|..|.+. |++|.++.+.. +..+...+.| .. ...+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLR----ATTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeE----EeCCHHHHH
Confidence 47999999999999999999999 99987776643 3334344432 22 135777889
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cchh-------hhhhhcccCCCC-CccEEEeccCCCChhhHHH
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSIGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv~l-------~~~~~~~~~l~~-~i~vV~vhPn~pg~~~r~l 247 (317)
+++|+||+++|+....++++++.+.++++++|+++. |+.. ..++. .++. ....+...|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999877789999999999999888654 7753 12222 2232 123455667543221
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. .| .....++ .. .+.+..+.+..+++..|..
T Consensus 143 ~-~g-----~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 143 A-RG-----LPTAVVI-AS--TDEELAERVQELFHSPYFR 173 (325)
T ss_pred H-cC-----CCcEEEE-Ee--CCHHHHHHHHHHhCCCCEE
Confidence 1 12 2122222 22 2467888999999988854
No 73
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.30 E-value=4.6e-11 Score=109.13 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=107.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
||+|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 58999999999999999999999 99999998887765544433 33321 2468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC-----ch----h---------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhc
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHG-----FL----L---------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~G-----v~----l---------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (317)
.+..++.++.+.+. |++|+|+.= .. . +.+++ .+|.. ++|..--+.+... ++++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~----l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAV----LADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHH----hccC
Confidence 99999999998886 889987531 10 0 11121 33332 4554333333332 2222
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+.. +...++...+ |.++.+.+.+|.+.+|+.-+
T Consensus 143 ~~~~--~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 143 AKPG--GRRDVLVAGD--DAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CCcC--CceeEEEecC--cHHHHHHHHHHHHhcCccee
Confidence 1111 2223233333 36899999999999998765
No 74
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=7.6e-11 Score=114.15 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=113.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~e 174 (317)
+++|+|||.|.||.++|..+... |++|++++...+ ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999987766532 22211 112211000 12458889
Q ss_pred hcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhc
Q 021114 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (317)
++++||+|+-++|.+...+ ++.++.+.++++++|. -+++..+..+.+ .+...-+|++.||--|.+-++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 9999999999999888653 8889999999999765 445666656654 333445899999977766531
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.++++.+|...+.
T Consensus 151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~ 181 (321)
T PRK07066 151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRPLH 181 (321)
T ss_pred --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEe
Confidence 1225688899999999999999999965543
No 75
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.26 E-value=4.7e-11 Score=121.58 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=104.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc---CCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~v~~---ADvVILa 185 (317)
.+|||||+|.||.+||++|.+. |++|.+++|+.++..+...+ .|... -....+++|+++. +|+||++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEEE
Confidence 6899999999999999999999 99999888875543322221 14320 0014588888876 9999999
Q ss_pred cCCchHHH-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceE
Q 021114 186 ISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 186 vP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
+|+...++ +++++++.+++|.+|+|.+-... ....+ ..-.++++|+. +|-.=+... .+ .|. +
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~g------A~----~G~-~ 145 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEG------AR----NGP-S 145 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHH------hc----CCC-e
Confidence 99998865 88899999999999999876532 11111 11134677664 341111110 10 344 4
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
|.+..+ +++.+.++.+++.+|.+
T Consensus 146 -im~GG~--~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 146 -LMPGGS--FEAYKNIEDILEKVAAQ 168 (493)
T ss_pred -EEecCC--HHHHHHHHHHHHHHhhh
Confidence 566665 68999999999999964
No 76
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.26 E-value=1e-10 Score=111.31 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=104.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|+|||+|+||.++|++|.+. |++|++++++. +..+...+.|... ..++.++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~-~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNP-QAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 36899999999999999999999 99887776654 4455566667653 5688899999999999999987
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 191 ~~-~vl~---ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+. .++. .+.+.+++|+++++++.+... .+.. .....++.|+- .|-.-+... -+. |... +
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~~---a~~-------g~l~-~ 135 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSDN---AIT-------GTLL-L 135 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHHH---HHh-------CcEE-E
Confidence 54 4653 577889999999988766432 2221 11123566663 453222211 112 2333 3
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.... +++..+.++.+++.+|...+.
T Consensus 136 ~~gg--~~~~~~~~~p~l~~~g~~~~~ 160 (296)
T PRK15461 136 LAGG--TAEQVERATPILMAMGNELIN 160 (296)
T ss_pred EECC--CHHHHHHHHHHHHHHcCCeEe
Confidence 3333 468899999999999964433
No 77
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.26 E-value=8e-11 Score=112.03 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=104.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~---ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|++++++. +..+.+.+.|... ..+++|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNP-EAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999999 99987766653 4455566678764 4578888875 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 189 ~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.. ..++++++.+.+++|+++++++.... ..+.. ..-..++.|+- +|..=+... =+ .|. . +-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~ 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence 84 45688889999999999998865432 11211 11134678885 774433221 01 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021114 265 VHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~ 286 (317)
+.. +++..+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 444 36889999999999997
No 78
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.25 E-value=1.8e-10 Score=108.68 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=102.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|.||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+.+|+++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9988765544 44455566667653 45788999999999999998876
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 ~~-vl---~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
.+ ++ +++.+.+++|+++++++.+... .+.+ .+ ..+++|+-. |-.-+... .. .|...++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~---~~~~~g~~~~d~-pv~g~~~~----a~------~g~l~i~ 137 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA---ALKAKGIEMLDA-PVSGGEPK----AI------DGTLSVM 137 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH---HHHHcCCcEEEc-CCCCCHHH----Hh------hCcEEEE
Confidence 54 55 3578889999999998877542 2222 11 224555443 42211110 00 1233323
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. +++..+.+..+++.+|...+
T Consensus 138 -~gg--~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 138 -VGG--DKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHhcCCeE
Confidence 333 36889999999999996544
No 79
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.24 E-value=1.3e-10 Score=109.84 Aligned_cols=150 Identities=20% Similarity=0.135 Sum_probs=103.7
Q ss_pred EEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH-HHH
Q 021114 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (317)
Q Consensus 116 IIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~-~~v 194 (317)
|||+|+||.++|++|.+. |++|++++++. +..+...+.|... ..++.++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFP-DAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 99987776653 4455666677753 45889999999999999999665 557
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 195 l---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
+ +++.+.+++|++|++++++.....+.....+ ..++.|+-. |-.-+. ...+.| ... +-...+
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~---~~a~~g-------~l~-~~~gg~-- 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGV---GGARAG-------TLT-FMVGGV-- 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCH---HHHhhC-------cEE-EEECCC--
Confidence 7 5788899999999999987543221110122 246777764 622221 122333 333 223333
Q ss_pred HHHHHHHHHHHHHcCCCcEE
Q 021114 271 GRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~~~~ 290 (317)
++..+.++.+++.+|...++
T Consensus 136 ~~~~~~~~~~l~~~g~~~~~ 155 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNIVH 155 (288)
T ss_pred HHHHHHHHHHHHHhcCCeEe
Confidence 57889999999999965443
No 80
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.22 E-value=3.9e-10 Score=115.24 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=114.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCc-------------eec
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGF-------------TEE 165 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~-------------~~~ 165 (317)
.+++|||||+|.||..||..+... |++|++.++..+ ..+. ..+.|. ..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 458999999999999999999999 999987776543 3333 244552 22
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
..++++ +.+||+||-++|.+...+ ++.++...++++++|. ++++..+..+.. .....-+|++.|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 346655 569999999999988754 6778888889999984 788887766654 333335789999877776
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+ .-..++....++++.++.+..+++.+|...+.
T Consensus 151 v~--------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~ 184 (507)
T PRK08268 151 LM--------------KLVEVVSGLATDPAVADALYALARAWGKTPVR 184 (507)
T ss_pred cC--------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 63 12446677788899999999999999976543
No 81
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.21 E-value=2.2e-10 Score=116.16 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=103.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcC---cCCEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSDLVL 183 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~---~ADvVI 183 (317)
+.+|||||+|+||.+||++|.+. |++|.+++|+.++ .+...+ .|... ....+++|+++ ++|+|+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~-~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEK-TEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEE
Confidence 36899999999999999999999 9998887776443 233322 25321 12568888886 589999
Q ss_pred EccCCchHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCC
Q 021114 184 LLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (317)
Q Consensus 184 LavP~~~~~-~vl~ei~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G 258 (317)
+++|+.... ++++++.+++++|.+|+|++... ....+. ...++++|+. +|-.=+.. .-+ .|
T Consensus 72 l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~---gA~-------~G 137 (470)
T PTZ00142 72 LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEE---GAR-------YG 137 (470)
T ss_pred EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHH---HHh-------cC
Confidence 998887765 58899999999999999987542 112111 2235677764 33111211 111 23
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. + +.+..+ +++.+.++.+++.+|.+
T Consensus 138 ~-~-lm~GG~--~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 138 P-S-LMPGGN--KEAYDHVKDILEKCSAK 162 (470)
T ss_pred C-E-EEEeCC--HHHHHHHHHHHHHHhhh
Confidence 3 4 566665 68999999999999975
No 82
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.19 E-value=3e-10 Score=109.82 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~e 197 (317)
|.+||++|.+. |++|+++++..+ ..++...+.|... ..+..|+++++|+||+++|+..+. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 88999999999 999988876532 2234566778775 568999999999999999999876 58888
Q ss_pred HHhcCCCCcEEEEecCchhh---hhhhcccC-CCCCccEEEeccCC-CChhhHHHHhhcccccCCCceEEEEeccCCCHH
Q 021114 198 IFSCMKPNSILGLSHGFLLG---HLQSIGLD-FPKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~l~---~~~~~~~~-l~~~i~vV~vhPn~-pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~e 272 (317)
+++++++|++|+|++-+... +.-+..+. -++++.+...||-+ |++.-.+.|.-+ |.. +.-..-.+++
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~ee 173 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATEE 173 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCHH
Confidence 99999999999999876432 11111111 25789999999932 444332234332 222 3355678899
Q ss_pred HHHHHHHHHHHcCCC
Q 021114 273 ATNVALGWSVALGSP 287 (317)
Q Consensus 273 a~e~a~~l~~alG~~ 287 (317)
+++...+|.++.|..
T Consensus 174 ~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 174 QISKCVELAKSTGKK 188 (341)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999965
No 83
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.19 E-value=1.9e-10 Score=116.45 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=102.9
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhc---CcCCEEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~v---~~ADvVIL 184 (317)
+|||||+|+||.+||++|.+. |++|++++|+.++ .+...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~-~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEK-TDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 9998888776543 3444433 2 332 44677766 56899999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCch-h--hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL-L--GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 185 avP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv~-l--~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
++|+... .++++++.+++++|.+|+|.+... . ..... ....+++.||.....+-.... + .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsGG~~gA----~-------~G~- 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSGGEEGA----R-------KGP- 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCCCHHHH----h-------cCC-
Confidence 9999655 468899999999999999988542 1 11111 122457888876665522211 1 233
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+ +.+..+ +++.+.++.+++.++.+
T Consensus 136 ~-im~GG~--~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGGS--AEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCCC--HHHHHHHHHHHHHHhhh
Confidence 3 445554 78999999999999975
No 84
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.17 E-value=1.1e-09 Score=104.16 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
+++|||||.|.||..+|..+... |++|++.++..+ ..+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47899999999999999999999 999887776543 2222 3344432100 0134
Q ss_pred CHHhhcCcCCEEEEccCCchHHH--HHHHHHhcC-CCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~l-k~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
++ +.+++||+||-++|.+...+ ++.++...+ ++++++.. +++..+..+.. .....-++++.|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 66 55899999999999988754 777777777 89999874 55556655554 22233469999998876653
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHH-HcCCCcEE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTF 290 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~-alG~~~~~ 290 (317)
+ ..=+.+...++++.++.+..++. .+|...+.
T Consensus 152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~ 184 (286)
T PRK07819 152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQVVR 184 (286)
T ss_pred ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceE
Confidence 1 12367888999999999999988 59966543
No 85
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=2.2e-10 Score=109.87 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=97.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~v~~ADv 181 (317)
|+|+|||+|.||.++|..|.+. |++|.++.|+.+ ..+...+. |.... -....+++|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~-~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPE-FAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 8999999999999999999999 999888777533 23323222 31100 0014578888999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhcccCCCC---CccEEEeccCCCChhhHHHHhhcc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-----l~~~~~~~~~l~~---~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
|++++|.....+++ +.++++.+++ .+.|+. ...+.+ .+++ .--.+...|+.+... +
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~---~l~~~~~~~~~~~~gP~~a~~~-------~- 142 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR---VLEFLTQARVAVLSGPNHAEEI-------A- 142 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH---HHHHhcCCCeEEEECccHHHHH-------H-
Confidence 99999999765554 5567787766 455653 222221 1111 112346777664332 1
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchh
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFG 304 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~ 304 (317)
+|.... +.-...+.+..+.++.+++..|.+-.+ ..|+.|
T Consensus 143 ----~~~~~~-~~~~~~~~~~~~~v~~ll~~~~~~v~~--------~~di~g 181 (328)
T PRK14618 143 ----RFLPAA-TVVASPEPGLARRVQAAFSGPSFRVYT--------SRDRVG 181 (328)
T ss_pred ----cCCCeE-EEEEeCCHHHHHHHHHHhCCCcEEEEe--------cCCccc
Confidence 222221 111223467889999999988855444 456666
No 86
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.14 E-value=1.1e-09 Score=111.98 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=112.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
+++|+|||.|.||..||+++... |++|++++++.+ ..+. ..+.|...+. ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAE-ALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 999988776643 2222 2334421000 0134
Q ss_pred CHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++ +.+||+||.++|.+...+ ++.++...++++++|. .+++..+..+.. .+....++++.|.--|.+.++
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~~-- 151 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVMA-- 151 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccCc--
Confidence 6655 579999999999877653 7778888889998876 677776655543 333345799999877777631
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-..+.....++++.++.+..+++.+|...+.
T Consensus 152 ------------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~ 182 (503)
T TIGR02279 152 ------------LVEVVSGLATAAEVAEQLYETALAWGKQPVH 182 (503)
T ss_pred ------------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeE
Confidence 2446677788999999999999999976553
No 87
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.12 E-value=1.8e-10 Score=121.14 Aligned_cols=114 Identities=13% Similarity=-0.049 Sum_probs=92.3
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~-i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
||||+|+....++++++.++++++++|+|+++++-...+.....++.. .+||+.|| +.|++ ...|+..+...++|++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999743322211244432 57999999 55665 3455555555667899
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
+++||.++.++++++.+++||..+| .+++.+|+++|=
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD 115 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHD 115 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence 9999999999999999999999999 779999999984
No 88
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.11 E-value=2.4e-10 Score=113.03 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=100.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.++.| ++|||||+|+||..+|+.|+.+ |++|+++++.... . .+.. ...+++|++++||+|++|
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEEe
Confidence 67899 9999999999999999999999 9998665432211 1 1211 145899999999999999
Q ss_pred cCCch----HH-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAA----QA-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~----~~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+. .+ .+++ +.+..||+|++++.++ |-.+ ..++ .+......++|...+|. +... +..
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~-~g~i~~a~LDV~e~EP~-~~~~---L~~--- 246 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL-SGEDLDAVLDVWEGEPQ-IDLE---LAD--- 246 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH-hCCCcEEEEeCCCCCCC-CChh---hhh---
Confidence 99976 24 4776 7899999999999654 5322 2222 22233335677777884 3222 221
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021114 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (317)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~l~~alG~~ 287 (317)
.+.++|||-- .+.+..+ .++.+.+-+|..
T Consensus 247 ------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 247 ------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred ------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3788999863 3444333 234444555654
No 89
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=104.74 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=106.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||.+|+.+|.+. |++|++++|.. +..+...+.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~-~k~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTK-DKCKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcH-HHHHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 99999888764 4456677788875 67999999999999999999887
Q ss_pred HH-HHH---HHHhcCCCCcEE-EEecCchh---hhhhhcccCCCCCccEEEe--ccCCCChhhHHHHhhcccccCCCceE
Q 021114 192 AD-NYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSIGLDFPKNIGVIAV--CPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 192 ~~-vl~---ei~~~lk~gaiV-i~~~Gv~l---~~~~~~~~~l~~~i~vV~v--hPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
.+ ++- .++..+++|... +|++-+.. ..+.+ ..-..+..+|-. +=.-.+++ +|.-.
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~--~i~~~~~~~vDAPVSGg~~~A~-------------~G~Lt 169 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK--AISNKGGRFVDAPVSGGVKGAE-------------EGTLT 169 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH--HHHhCCCeEEeccccCCchhhh-------------cCeEE
Confidence 64 664 477778888877 78887632 12221 111234555532 11111221 23444
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
|+ ... ++...+.+..+++.+|...++
T Consensus 170 im-agG--de~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 170 IM-AGG--DEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred EE-ecC--cHHHHHHHHHHHHHhcceEEE
Confidence 33 333 378889999999999965544
No 90
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.10 E-value=2.1e-09 Score=104.99 Aligned_cols=145 Identities=12% Similarity=0.166 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~e 197 (317)
|.+||.+|.+. |++|++++++.+. ..+...+.|+.. ..+..++++++|+||+++|+.. ..+++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 89999999999 9998877765431 334556677763 4588889999999999999988 5678889
Q ss_pred HHhcCCCCcEEEEecCchhh----hhhhcccCCCC---CccEEEeccCCC-ChhhHHHHhhcccccCCCceEEE-----E
Q 021114 198 IFSCMKPNSILGLSHGFLLG----HLQSIGLDFPK---NIGVIAVCPKGM-GPSVRRLYVQGKEINGAGINSSF-----A 264 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~l~----~~~~~~~~l~~---~i~vV~vhPn~p-g~~~r~lf~~G~e~~g~G~~~ii-----t 264 (317)
+.++++++++|++++.+... .+.. .++. .+.++..||-.. +.+ ++ .-+++ +
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~v~Gae------~g-------~l~Vm~gg~t~ 165 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAAVPGTP------QH-------GHYVIAGKTTN 165 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCccccccc------cc-------hheEEeCCCcc
Confidence 99999999999988776432 2222 2232 334444455221 111 11 11223 2
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
+....+++.++.++.+++++|. +++.+..
T Consensus 166 ~~~~~~~e~~e~v~~LL~a~G~-~v~~~~~ 194 (342)
T PRK12557 166 GTELATEEQIEKCVELAESIGK-EPYVVPA 194 (342)
T ss_pred cccCCCHHHHHHHHHHHHHcCC-EEEEeCH
Confidence 3445578999999999999994 4455553
No 91
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.08 E-value=3.3e-09 Score=101.32 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
.+ |+|+|||+|+||.++|+.|.+. |++|.++.|+.. .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 8999999999999999999999 999987776531 2677889999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEEEec
Q 021114 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~-lk~gaiVi~~~ 212 (317)
....++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8777888888764 78888887654
No 92
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.08 E-value=2.4e-10 Score=112.97 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=99.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+|.| ++|||||+|+||+.+|+.|+.+ |++|+++++.... ..... ...+++|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999999 9998765432111 01111 145899999999999999
Q ss_pred cCCchH----H-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+.. + .+++ +.+..||+|++++.++ |-. +..+++ +.......+|...+|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 998874 3 4776 7999999999999654 532 223332 2232335677778884 3222 3321
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCC
Q 021114 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGS 286 (317)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~l~~alG~ 286 (317)
.+ ++|||-- .+.+... .++.+.+.+|.
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 23 7899863 3444443 33555556663
No 93
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.07 E-value=2.1e-09 Score=106.54 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~~ 171 (317)
|+|+|||+|.||.++|..|.+. |++|+++++. .+..+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDID-QEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECC-HHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998665544 33222211 123 221 357
Q ss_pred HHhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCchh---hhh----hhcccCCCCCcc-EE
Q 021114 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL---GHL----QSIGLDFPKNIG-VI 233 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~----------~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~----~~~~~~l~~~i~-vV 233 (317)
..++++++|+||+++|... ...+++++.+.+++|++|++.+++.. ..+ .+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999753 44566788899999999998876521 111 111000111233 36
Q ss_pred EeccCCCCh--hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcC-CCcEEecCch
Q 021114 234 AVCPKGMGP--SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE 295 (317)
Q Consensus 234 ~vhPn~pg~--~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG-~~~~~~tT~~ 295 (317)
..+|..... .+.+++. ...++.- .+++..+.++.+++.++ ...+..++++
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE 202 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence 777743221 1111111 1232323 35789999999999997 4445545544
No 94
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.07 E-value=1.9e-09 Score=104.71 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=103.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~e~v~~AD 180 (317)
++|+|||.|+||.++|..|.+. | +++++.++ ++..+...+.+ +...+ ....+.+++++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999998 8 45555544 22232222222 10000 01357778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiV-i~~~Gv~l-------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+||+++|.....++++++.+++++++++ ....|+.. ..+++ .++....++...|+.+... +
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------~- 148 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------A- 148 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH-------H-
Confidence 9999999999999999999999888754 47778753 23433 3444334567888664332 1
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhh
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~ 306 (317)
+|.++.++...+ +.+..+.+.+++..-|.+-. +.+|+.|-+
T Consensus 149 ----~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~--------~s~Di~gve 189 (341)
T PRK12439 149 ----EGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVY--------TTDDVVGVE 189 (341)
T ss_pred ----cCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEE--------EcCchHHHH
Confidence 244443333322 34555666666665553332 367877754
No 95
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.06 E-value=5.5e-09 Score=93.03 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=102.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI 172 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~---------~~~~~~~~ 172 (317)
||+|||.|.||..+|..+... |++|.+.+...+ ..+.+ .+.|... .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999987766432 22111 1122110 00114678
Q ss_pred HhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHh
Q 021114 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~ 249 (317)
+++. +||+||=++|..... +++.++.+.++++++|. .++++.+..+.. .++..-+|++.|+-.|.+.+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~----- 144 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM----- 144 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-----
Confidence 8888 999999999987764 48999999999999986 778888877775 34445689999997776542
Q ss_pred hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.-.=+.++..++++.++.+.++++.+|...+
T Consensus 145 ---------~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 145 ---------PLVEVVPGPKTSPETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 1122678889999999999999999985444
No 96
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.06 E-value=2.6e-09 Score=103.79 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=118.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
.+|||||+|+||+=+|.-|.+. |+.++...|.+ --..+...|..- .+.+.+++ +..|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99887777764 233455555442 44566655 68999999999888
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 191 QADNYEKIFS-CMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~~vl~ei~~-~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+.+++...-+ .+|.|++++++-+++. ..++. .+|++.+++-+||+ -|+.. + --.++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpm-fGPks------v-nh~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPM-FGPKS------V-NHEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCC-cCCCc------C-CCccccCceEEEEe
Confidence 8788775543 4899999998887753 33333 78999999999994 33331 0 12235667766554
Q ss_pred cC----CCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 267 QD----VDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 267 ~d----~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
.- ..++.-|.+.+++...|++ .+++|.++|-+
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 32 3378889999999999965 45677777743
No 97
>PLN02858 fructose-bisphosphate aldolase
Probab=99.01 E-value=3.1e-09 Score=119.46 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=103.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||.+||++|.+. |++|+++++.. +..+...+.|... ..++.+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYK-PTLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 99987776653 3445555667653 56889999999999999997665
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC---CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 192 ~-~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l---~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
. +++ ..+.+.+++|+++++++.+.....++....+ +.++.|+- .|-.-++.. -+ .|.-. +.
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A~-------~G~L~-im 461 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---AA-------MGTLT-IM 461 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---hh-------cCCce-EE
Confidence 4 566 2578889999999998876432211100011 14566653 232222221 01 23333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+..+ ++..+.++.+++.+|...+
T Consensus 462 vgG~--~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 462 ASGT--DEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC--HHHHHHHHHHHHHHhCcEE
Confidence 3333 5789999999999996543
No 98
>PLN02858 fructose-bisphosphate aldolase
Probab=99.01 E-value=4.1e-09 Score=118.49 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=105.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||..||++|.+. |++|.+++++. +..+...+.|... ..++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIST-PLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 99988777654 4455666778764 67999999999999999999887
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 192 ~~-vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~--i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.+ ++ +.+++.+++|++++|++-+.....++....+ ..+ +.|+- +|-.=+.. .-+.| .-. +.
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~L~-im 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------KLM-II 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------CeE-EE
Confidence 65 65 3688889999999998866432221100011 223 55553 33111111 11123 223 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+..+ ++..+.++.+++.+|...+
T Consensus 142 vGG~--~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 142 ASGR--SDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred EcCC--HHHHHHHHHHHHHhcCceE
Confidence 4443 5788999999999995443
No 99
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.98 E-value=1.1e-08 Score=102.06 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=100.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--------------- 175 (317)
+++|+|||+|.||.++|.+|.+. |++|+.+++ +++..+ +...|..+ .....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~-~~~~v~-~l~~g~~~--~~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDI-NQHAVD-TINRGEIH--IVEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeC-CHHHHH-HHHCCCCC--cCCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 999865554 444343 33444332 011122222
Q ss_pred cCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh-------hhhhcccC--CC----CCcc-
Q 021114 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSIGLD--FP----KNIG- 231 (317)
Q Consensus 176 v~~ADvVILavP~~----------~~~~vl~ei~~~lk~gaiVi~~~Gv~l~-------~~~~~~~~--l~----~~i~- 231 (317)
+++||+||+|+|.. .+..+++++.+++++|++|++.+.+... .+.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999974 4455777899999999999987765321 12211111 11 0112
Q ss_pred EEEecc--CCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCch
Q 021114 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (317)
Q Consensus 232 vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~ 295 (317)
.+...| -.++....+... .+.++ .. .+++..+.++.+++.++...+..++++
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vv--gG-~~~~~~~~~~~ly~~~~~~~~~~~~~~ 206 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVI--GG-MTPVCSARASELYKIFLEGECVVTNSR 206 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEE--Ee-CCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence 345667 445544332221 23332 22 357889999999999996555555554
No 100
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.94 E-value=3.4e-09 Score=91.97 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=69.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhcCcCCEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~e~v~~ADvV 182 (317)
||+|||.|++|.++|..|.+. |++|.++.++. +..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998877754 33332222221100 01246899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv 214 (317)
++++|.+.+.++++++.++++++++++ ...|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998877 45577
No 101
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.90 E-value=3.9e-08 Score=92.50 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=101.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~v~~ADvV 182 (317)
|+|+|||.|.||..+|..|.+. |++|.+..| . +..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 998877776 3 3344445556432110 123566667899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~ 254 (317)
|+++|..+..++++++.+.++++++|+ ...|+. ...+.. .+|++ .++ ......|+....
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~~--------- 139 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVVQ--------- 139 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEEE---------
Confidence 999999988889999999888888765 557874 334443 34443 222 233233333310
Q ss_pred cCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 255 ~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
.+.+. ..+........+..+.+.+++...|.......++
T Consensus 140 ~~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 178 (305)
T PRK12921 140 RADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI 178 (305)
T ss_pred cCCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence 01222 2243333333455666677788888655553333
No 102
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.88 E-value=2.7e-08 Score=95.44 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=100.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~-----------~~~~~~e~v~ 177 (317)
+++|+|||.|.||.++|..|.+. |++|++..|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 37899999999999999999999 99988776642 23344445543210 0 01233 5678
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEecc-----CCCChhhHHHHhh
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQ 250 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~ 250 (317)
.+|+||+++|.....++++++.+.++++++|+ ...|+. ...++. .+++..-+.+.+| .+|+... .
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~---~~~~~~~~~g~~~~~~~~~~pg~~~-----~ 144 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA---ALPGATVLAGMVPFNVISRGPGAFH-----Q 144 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH---hCCCCcEEEEEEEEEEEecCCceEE-----e
Confidence 99999999999988889999999999999876 446764 334443 4444322222233 2333221 1
Q ss_pred cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.+.|. ..+. . .+..+.+..+++..|....+..++....
T Consensus 145 ----~~~g~-l~~~--~---~~~~~~~~~~l~~~g~~~~~~~di~~~~ 182 (341)
T PRK08229 145 ----GTSGA-LAIE--A---SPALRPFAAAFARAGLPLVTHEDMRAVQ 182 (341)
T ss_pred ----cCCCc-eEec--C---CchHHHHHHHHHhcCCCceecchhHHHH
Confidence 11222 2222 1 1345777888888887666644444333
No 103
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.87 E-value=6.2e-08 Score=90.85 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=97.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------~~~~~~~e~v~~ADvVIL 184 (317)
|+|+|||.|.||..+|..|.+. |++|.+..|.. +..+...+.|+...+ ....+.+++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRG-AHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh-HHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 99987777643 334445555653100 113345555 89999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccccC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g 256 (317)
++|..+..++++++.+.+.++++|+ ...|+. ...+.. .+++. .++ ......|+... ..|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~---------~~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVR---------HTG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEE---------EcC
Confidence 9999988889999999998876554 677875 334443 33332 232 22222333321 012
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.|... +...++.. +..+.+.+++...|.....
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~~~~ 171 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLDVEW 171 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCCCCC
Confidence 34433 44433322 4456677778887765433
No 104
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.82 E-value=1.4e-08 Score=96.80 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=82.1
Q ss_pred cccchhhhhhcCCCcccc--cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~--~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++.|+..-+-.+.|.... ...++.| ++++|||+|.||.++|+.|+.. |++|++.+|+.. ..+.+.+.|+.
T Consensus 125 va~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~ 196 (287)
T TIGR02853 125 VAIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLI 196 (287)
T ss_pred eEEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCe
Confidence 334444444444443211 2358899 9999999999999999999999 999888877643 34445556654
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
. ....++++.++++|+||+++|..... .+.++.|+++++|+|++..
T Consensus 197 ~--~~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 197 P--FPLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred e--ecHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCcC
Confidence 2 11346778899999999999975221 3577889999999988643
No 105
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.80 E-value=5.8e-09 Score=88.58 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=77.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++++ ++|+|||.|.||.++++.|++. | .+|.+++++.++..+.+.+.+.........+.+++++++|+||++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4667 9999999999999999999987 6 567666665433333344434210000145777889999999999
Q ss_pred cCCchH-HH--HHHHHHhcCCCCcEEEEecCchh--hhhhhcccCCCCCccEEEeccCC
Q 021114 186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPKNIGVIAVCPKG 239 (317)
Q Consensus 186 vP~~~~-~~--vl~ei~~~lk~gaiVi~~~Gv~l--~~~~~~~~~l~~~i~vV~vhPn~ 239 (317)
+|+..+ .+ .+. ...++++++++|++.... ...+. .-..++.++.++|..
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~~ 142 (155)
T cd01065 89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEML 142 (155)
T ss_pred cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHHH
Confidence 999886 21 121 123688999998876532 11111 112356788777733
No 106
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.76 E-value=1.7e-07 Score=90.51 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=111.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~ 171 (317)
|++|+|||.|.||..+|..+... |++|.+.+.+.+ +++++..+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999999887 899887766522 222333334422211 00123
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
+. .+++||+||=+++-+... +++.++-.+.+|++++- .+++..+..+.+. ..-| -+|++.|+-.|.+-++
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~m~--- 149 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPLMP--- 149 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCcce---
Confidence 32 789999999999987764 48999999999999996 7888887766641 2223 4699999977766631
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
-.=+.+...++++.++.+.++...+|..
T Consensus 150 -----------LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 150 -----------LVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 1224577788999999999999999954
No 107
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.75 E-value=1.9e-07 Score=99.27 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=115.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceecC---------CC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~~ 168 (317)
+.|++|+|||.|.||..+|..+... |++|++.+...+ ..+ ...+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999887765532 222 12223321100 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..++ +.+++||+||=++|.+-.. +++.++-+.++++++|. .++++.+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2345 4579999999999988765 48999999999999986 778888777765 333445799999988776531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=|.++..++++.++.+.+++..+|...+.
T Consensus 460 --------------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~ 490 (715)
T PRK11730 460 --------------LVEVIRGEKTSDETIATVVAYASKMGKTPIV 490 (715)
T ss_pred --------------eEEeeCCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 1225678899999999999999999976553
No 108
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.75 E-value=2.8e-08 Score=87.79 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=68.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| |++.|+|+|.+|..+|+.|+.. |.+|++....+-+ .-+|...|+. ..+++|+++++|++|.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 56789 9999999999999999999999 9999888765433 3467778998 45899999999999999
Q ss_pred cCCchHHHHH-HHHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl-~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|-...+ + .+.+..||+|++|..++.+.
T Consensus 86 TG~~~v---i~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDV---ITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSS---B-HHHHHHS-TTEEEEESSSST
T ss_pred CCCccc---cCHHHHHHhcCCeEEeccCcCc
Confidence 887543 3 36677899999999988874
No 109
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.75 E-value=2.3e-07 Score=98.65 Aligned_cols=157 Identities=9% Similarity=0.068 Sum_probs=114.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (317)
..+++|+|||.|.||..+|..+... |++|++.+...+ ..+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3558999999999999999999999 999877765432 2221 1222211000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..++ +.+++||+||=++|.+-.. +++.++-+.++++++|. .+++..+..+.. .+...-+|++.|+-.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 4579999999999988765 49999999999999986 677877777765 333345799999977776531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.++..++++.++.+.+++..+|...+.
T Consensus 460 --------------lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 490 (714)
T TIGR02437 460 --------------LVEVIRGEKSSDETIATVVAYASKMGKTPIV 490 (714)
T ss_pred --------------eEeecCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1125578899999999999999999976554
No 110
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.74 E-value=2.7e-07 Score=97.87 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=112.4
Q ss_pred CCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (317)
.+++|+|||.|.||..+|..+. .. |++|++.+... +..+.+ .+.|..... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINP-QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4579999999999999999886 57 99988766543 222221 222211000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
.+++ +.+++||+||=++|.+... +++.++-+.++++++|. -+++..+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2345 5689999999999988765 48999999999999986 677888877765 333345899999977766531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.++++.+|...+.
T Consensus 452 --------------lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~ 482 (699)
T TIGR02440 452 --------------LVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482 (699)
T ss_pred --------------eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 1225678889999999999999999976554
No 111
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.71 E-value=2.1e-07 Score=99.16 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceec--------C-CCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTL 169 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~ 169 (317)
.|++|+|||.|.||..+|..+... |++|++.+...+ ..+ ...+.|...+ . ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 458999999999999999999999 999877665432 222 1222221100 0 012
Q ss_pred CCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
.++ +.+++||+||=++|.+... +++.++-+.++++++|. -+++..+..+.. .+...-+|++.|+-.|.+.++
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~- 481 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ- 481 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc-
Confidence 355 4679999999999988765 48999999999999986 677888877765 333345799999987776631
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.+++..+|...+.
T Consensus 482 -------------LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 512 (737)
T TIGR02441 482 -------------LLEIITHDGTSKDTLASAVAVGLKQGKVVIV 512 (737)
T ss_pred -------------eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 1225678899999999999999999976553
No 112
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.71 E-value=2e-07 Score=89.39 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=69.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhc-CcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~--~~~~~~~e~v-~~AD 180 (317)
|+|+|||.|.||.++|..|.+. |++|.++.|+. +..+.-.+. +.. ..+ ....+.++.+ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNH-TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH-HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999999 99987776643 222222221 110 000 0124566666 5899
Q ss_pred EEEEccCCchHHHHHHHHHh-cCCCCc-EEEEecCc
Q 021114 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGF 214 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~-~lk~ga-iVi~~~Gv 214 (317)
+||+++|+....++++++.+ ++++++ +|+...|+
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 99999999999999999998 888776 45577887
No 113
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.3e-07 Score=86.83 Aligned_cols=146 Identities=22% Similarity=0.209 Sum_probs=107.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---cCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~---v~~ADvVILavP~ 188 (317)
|+||.||+|.||..+.++|.+. |+++ ++++.++.+.+.+...|... ..+++|. +...-+|-|++|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9986 56677777888888899764 4566665 4567899999999
Q ss_pred chHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 189 AAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 189 ~~~~-~vl~ei~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..++ ++++++.++|.+|.+|||-+-.. +...+ ....++++|+-+=-.+=.. |.-..+.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~---~l~~kgi~flD~GTSGG~~-------------G~~~G~~l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAK---LLAEKGIHFLDVGTSGGVW-------------GAERGYCL 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHH---HHHhcCCeEEeccCCCCch-------------hhhcCceE
Confidence 8665 59999999999999999977542 22222 1335688998654433111 11122445
Q ss_pred EeccCCCHHHHHHHHHHHHHcCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~ 286 (317)
.+.. ++++++.++-+|.++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 5666 47999999999998753
No 114
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.70 E-value=6.4e-08 Score=98.16 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=74.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| ++++|||+|.||..+|+.|+.+ |++|++..+...+ ...+...|+. ..+++++++++|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9998776554332 3345556776 35789999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+. ...+++ +.+..||+|++|+.++-+
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCC
Confidence 74 234775 789999999999977654
No 115
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.70 E-value=4.2e-07 Score=96.45 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=113.6
Q ss_pred CCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (317)
.+++|+|||.|.||..+|..+. .. |++|++.+.+. +..+. ..+.|...+. ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINP-QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999987 77 99987766542 22222 1222221000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..+. +.+++||+||=++|.+... +++.++-++++|+++|. .+++..+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5679999999999988764 48999999999999986 677888877765 333345899999977766531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=|.++..++++.++.+.+++..+|...+.
T Consensus 457 --------------lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 487 (708)
T PRK11154 457 --------------LVEVIPHAKTSAETIATTVALAKKQGKTPIV 487 (708)
T ss_pred --------------eEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 1226688899999999999999999976554
No 116
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.67 E-value=9.3e-07 Score=84.57 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=106.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~e~v~~ADvV 182 (317)
++|+|||.|.||..+|..|.+. |++|++..|.. .+...+.|.... ++. ..+..+.+..+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 99988887753 233344554321 010 11222346789999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEE------eccCCCChhhHHHHhhcccc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l-~~~~~~~~~l~~~i~vV~------vhPn~pg~~~r~lf~~G~e~ 254 (317)
|+++|..+..++++.+.+.++++.+|+ ..-|+.. ..+.. .+|+. +++. .....|+... .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 999999888888889988888877665 5667743 33443 44543 3332 3333443321 1
Q ss_pred cCCCceEEEEeccCCC-----HHHHHHHHHHHHHcCCCcEEecCchhhhhccch
Q 021114 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFATTLEQEYKSDIF 303 (317)
Q Consensus 255 ~g~G~~~iitp~~d~~-----~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~ 303 (317)
.|.|... |.+....+ .+..+.+.++++..|....+...++...-..|+
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 2234433 44433322 456667778899999776665555555444443
No 117
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.64 E-value=7.5e-07 Score=89.42 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=63.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhcCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~~~~~~~e~v~~A 179 (317)
++|||||+|.||..+|.+|.+ |++|+ +++.++...+... .|... | ....++..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~-g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVV-GFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEE-EEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 899999999999999999654 67775 4554444444333 44320 0 00123444578999
Q ss_pred CEEEEccCCch------H-HHHH---HHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAA------Q-ADNY---EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~------~-~~vl---~ei~~~lk~gaiVi~~~Gv 214 (317)
|++|+|+|... . ..++ +.+.+++++|++|++.+-+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999999652 1 2333 4788999999999987654
No 118
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.57 E-value=1e-06 Score=88.30 Aligned_cols=93 Identities=23% Similarity=0.247 Sum_probs=74.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| ++++|+|+|.||..+++.++.. |.+|++.++ ++...+.|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~-d~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEV-DPICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC-ChhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 35789 9999999999999999999999 998877544 444567888899863 4677889999999998
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+.. ..+++ +.+..||+|.+|+.++.+
T Consensus 265 tG~---~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGN---KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 764 34565 568899999999877643
No 119
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.56 E-value=6.1e-07 Score=90.97 Aligned_cols=139 Identities=15% Similarity=0.083 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCc---CCEEEEccCCchHHH-
Q 021114 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (317)
Q Consensus 122 mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~---ADvVILavP~~~~~~- 193 (317)
||.+||++|.+. |++|.+++|+.++..+..... |++. ..+++|+++. +|+|++++|+...++
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999988887755443333222 3553 5689998874 899999999988765
Q ss_pred HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 194 vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
+++++++.|.+|.+|+|.+-... ..... ..-.++++||..-=.+ +.. .=+ .|. + |.+..+
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSG-G~~---gA~-------~G~-s-iM~GG~-- 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSG-GEE---GAL-------HGP-S-IMPGGQ-- 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCC-CHH---HHh-------cCC-E-EEEeCC--
Confidence 88999999999999999874421 11111 1213467776532222 111 011 233 4 557765
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021114 271 GRATNVALGWSVALGSP 287 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~ 287 (317)
+++.+.++-+++.+|.+
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999965
No 120
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.54 E-value=6.9e-07 Score=86.83 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=104.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~v~~ADv 181 (317)
++|+|||.|+-|.++|+-|.+. |++|.+|.|+.+ ..+.-.+. |+... -....|+++++++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 7899999999999999999999 999888877532 11111110 11110 0125689999999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch------h-hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhccc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~------l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e 253 (317)
|++++|.+...++++++.+++++++.++ .+.|+. + +.+++ .+|.+.-++-.=||-..- . .
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~E----V-a---- 142 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKE----V-A---- 142 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHH----H-h----
Confidence 9999999999999999988898888776 566762 2 23333 455444444555644222 2 2
Q ss_pred ccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhh
Q 021114 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306 (317)
Q Consensus 254 ~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~ 306 (317)
+|.++-++.... +.+..+.++.+|.. +++ +--+..|+.|-+
T Consensus 143 ---~g~pta~~vas~-d~~~a~~v~~~f~~---~~F-----rvy~~~Dv~Gve 183 (329)
T COG0240 143 ---QGLPTAVVVASN-DQEAAEKVQALFSS---PYF-----RVYTSTDVIGVE 183 (329)
T ss_pred ---cCCCcEEEEecC-CHHHHHHHHHHhCC---CcE-----EEEecCchhhhH
Confidence 346776666654 34555555555544 322 111356777655
No 121
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.53 E-value=4.6e-07 Score=86.77 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| ++++|||+|.+|..+++.|+.. |.+|++.+++.. ..+.+...|+.. ....++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~--~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSP--FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCee--ecHHHHHHHhCCCCEEEEC
Confidence 56789 9999999999999999999998 998877776643 355666777653 1134677889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|... +-++.+..|+++.+|+|.+.
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence 98632 22467788999999998764
No 122
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=3.1e-07 Score=88.47 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=62.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |+|+|||.| .||.+||..|.+. |+.|+++.++. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 47899 999999996 9999999999999 99988775542 267889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... ++. .+|+|++|+|++
T Consensus 209 avg~~~~v---~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLI---DAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChhcc---cHh--hccCCcEEEEec
Confidence 99986542 211 289999999985
No 123
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.49 E-value=8.7e-07 Score=88.60 Aligned_cols=92 Identities=23% Similarity=0.235 Sum_probs=74.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.++| ++++|||+|.+|..+|+.++.. |.+|++..+... ....+...|+. ..+++|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999999 999877655433 34566677886 346788999999999887
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
.. ..+++ +.+..||+|++++.++.+
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 64 45676 588999999999977654
No 124
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.48 E-value=7.3e-07 Score=87.27 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=72.0
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCC--------ceEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~~~~ 170 (317)
||+|||.|+.|.++|..|.+. | ++|.+|.|.. .+....... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 589999999999999999987 6 8888887632 111111111 1221000 0135
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh
Q 021114 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l 216 (317)
|+++++++||+|++++|++.+.++++++.++++++++++ .+.|+..
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 889999999999999999999999999999999887654 7778743
No 125
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.46 E-value=6.4e-07 Score=88.40 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred CEEEEEeccchHHHHHHHHHhh-hhhhcCCceEEEEecCCcc---cHHHHHH-C--------Cceec-C-CCcCCHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSR---SFAEARA-A--------GFTEE-N-GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~-~~~~~~G~~Vivg~r~~~~---s~~~A~~-~--------G~~~~-~-~~~~~~~e~v 176 (317)
++|+|||.|++|.++|..|.+. .+.-.+|++|.+|.|+..- ....... . |+... + ....|+++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 7999999999999999999987 0000112688877766421 1111111 1 11100 0 0145788999
Q ss_pred CcCCEEEEccCCchHHHHHHHHHh--cCCCCcEEE-EecCch
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL 215 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~--~lk~gaiVi-~~~Gv~ 215 (317)
++||+|++++|++...++++++.+ +++++++++ .+.|+.
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 999999999999999999999988 888776554 788874
No 126
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.45 E-value=3.2e-06 Score=83.98 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=63.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~e~ 175 (317)
|+|+|||+|.||..+|..+ +. |++|+..+ .+++..+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD-~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALD-ILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEE-CCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 5899999999999999655 46 88876554 44443443332 11110 012346788
Q ss_pred cCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 176 v~~ADvVILavP~~-----------~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+++||+||+++|.. ...++++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22346677877 69999998776553
No 127
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.45 E-value=1e-06 Score=88.56 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.+.| ++++|||+|.+|..+|+.|+.. |.+|++.++...+ ...+...|+. ..+++++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 4789 9999999999999999999999 9998777655433 3455556776 347889999999999987
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~ 215 (317)
.. ..+++ +.+..||+|++++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 34676 7889999999999877653
No 128
>PLN02494 adenosylhomocysteinase
Probab=98.43 E-value=1.2e-06 Score=88.96 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=72.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.+.| ++++|||+|.+|..+|+.++.. |++|++..+... ....+...|+.. .+++++++++|+||.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~-r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPI-CALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 4789 9999999999999999999998 998877655432 234667778863 47889999999999866
Q ss_pred CCchHHHHH-HHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl-~ei~~~lk~gaiVi~~~Gv 214 (317)
... .++ .+.++.||+|++|+.++.+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 543 344 5788899999999977653
No 129
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=2.9e-06 Score=84.19 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=104.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e---~v~~ADvVIL 184 (317)
..||+||+|.||..+|+|+.+. |+.|.+++|..++..+.-.+.+ ++. ..+++| .++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999998776655444443 222 345665 4677889999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++.-... ..++++++|+|.+|.+|||-+-. ++...++ .-.+++.||+.==.+ |.|.-=.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9988543 45899999999999999998753 2333332 335688999743322 11000011
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+. |.|..+ +++.+.++-+++++-++
T Consensus 139 PS-iMpGG~--~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGGQ--KEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCCC--HHHHHHHHHHHHHHHhh
Confidence 23 445554 78999999999988654
No 130
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.34 E-value=7.8e-06 Score=83.28 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=95.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--c-----------C---CCcCCHHh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------N---GTLGDIYE 174 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~---~~~~~~~e 174 (317)
+|+|+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.. +.|... + . ...++..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l-~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAW-NSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHH-HcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 48999999999999999999876 2246665 444443333221 111100 0 0 01346778
Q ss_pred hcCcCCEEEEccC--Cc-------------hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCcc-EEEe
Q 021114 175 TISGSDLVLLLIS--DA-------------AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIG-VIAV 235 (317)
Q Consensus 175 ~v~~ADvVILavP--~~-------------~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~-vV~v 235 (317)
++++||++|+|+| .. .+..+.+++.++++++++|+.-+-+.. ..+......-.++.+ .|..
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~ 154 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILS 154 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEE
Confidence 8999999999986 21 223456689999999999875543311 111110000011233 3566
Q ss_pred cc--CCCChhhHHHHhhcccccCCCceEEE-EeccC-CCHHHHHHHHHHHHHcC-CCcEEecCch
Q 021114 236 CP--KGMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALG-SPFTFATTLE 295 (317)
Q Consensus 236 hP--n~pg~~~r~lf~~G~e~~g~G~~~ii-tp~~d-~~~ea~e~a~~l~~alG-~~~~~~tT~~ 295 (317)
.| ..+|..+++++. .+-++ ...++ ..+++.+.++++...+- ...+..|+++
T Consensus 155 ~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~ 210 (473)
T PLN02353 155 NPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW 210 (473)
T ss_pred CCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence 66 234444433332 34433 22222 22567888888888774 2456666665
No 131
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.33 E-value=2.4e-06 Score=76.61 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=60.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--cC---------------CCcCCHHh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN---------------GTLGDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~---------------~~~~~~~e 174 (317)
|||+|||+|-+|..+|..|.+. |++|+ |.+.+++..+. ...|... |. ....+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99874 66655432222 2223110 00 01357788
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCc
Q 021114 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 175 ~v~~ADvVILavP~~~----------~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++++|++++|+|... ..+.++++.++++++++|++-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999997331 334667899999999998876644
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.32 E-value=3e-06 Score=80.21 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=62.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|||||+|.||..++++|.+.. .++++....+++. +..+.+.+.|... ...+++++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 1666654444433 3333444555321 24689999999999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 021114 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (317)
Q Consensus 191 ~~~vl~ei~~~lk~ga-iVi~~~G 213 (317)
+.++..+.+. .|+ +++.+.|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 8777766543 454 4444434
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.32 E-value=3.5e-06 Score=79.31 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
+++|||||+|.||..+++.+.+. +.+++++...+++.+..+. +...|... +.+++|++.++|+|++++|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47899999999999999999875 1135554445554433332 33344432 568899889999999999998
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
.+.++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 134
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=1.9e-06 Score=82.98 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| |+|+||| .|.||.+||.+|.+. |+.|+++..+. .+++|++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7899 9999999 999999999999999 99988774321 1467889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.... +++. .+++|++|+|++-
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvGi 231 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVGI 231 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcCC
Confidence 998663 3322 2899999999864
No 135
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.26 E-value=1.7e-05 Score=76.50 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=109.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~e~v~~ADvVI 183 (317)
|||.|+|.|.||+-++..|.+. |.+|.+..|.. . .+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 86676666653 2 455566676442111 112235566899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEeccC-----CCChhhHHHHhhcccccC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVCPK-----GMGPSVRRLYVQGKEING 256 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn-----~pg~~~r~lf~~G~e~~g 256 (317)
++++-.+..+.++.+.+.+++++.|+ .--|.. .+.+.. .++...-+.++.+- +|+... ..|
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g 140 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG 140 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence 99999999999999999999998665 667775 333443 55554223334442 233221 122
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhh
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGE 305 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e 305 (317)
.|... +........+..+.+.+.++..|....+...+....-..|+..
T Consensus 141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N 188 (307)
T COG1893 141 LGDTV-IGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVN 188 (307)
T ss_pred CCcEE-EccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhh
Confidence 34444 3333333335666666777888876666555555555555444
No 136
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.23 E-value=4.9e-06 Score=80.00 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+.| ++|+|||.|.||..+++.|+.. | .+|++.+|..++..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 6 4677777665555566677665320 123567888999999999
Q ss_pred cCCchHHHHHHHHHhcC-CCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~l-k~gaiVi~~~ 212 (317)
+|.....+++.+..... +++.+++|.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99877644555444332 3566777765
No 137
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.19 E-value=1.8e-05 Score=75.82 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceec-CCCc------CCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-NGTL------GDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~-~~~~------~~~~e~v~~ADvVI 183 (317)
|+|+|||.|.||+-+|-.|.+. |.+|.+..|..+ ..+.-++ .|+... ++.. ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 998887777532 2332322 344321 1110 01112245789999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCc-----cEEEeccCCCChhhHHHHhhcccccC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNI-----GVIAVCPKGMGPSVRRLYVQGKEING 256 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l-~~~~~~~~~l~~~i-----~vV~vhPn~pg~~~r~lf~~G~e~~g 256 (317)
++++-.+..+.++++.+++.+++.|+ .--|+.. ..+.. .+|++. .+++.+...|+... ..|
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v~---------~~~ 143 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRVV---------FAG 143 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEEE---------Eec
Confidence 99999988889999999998888765 6778753 33443 445431 12234444554431 112
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.|. ..|.+..+ +..+...+++...|....+
T Consensus 144 ~g~-~~~G~~~~---~~~~~l~~~l~~ag~~~~~ 173 (305)
T PRK05708 144 HGF-TWLGDPRN---PTAPAWLDDLREAGIPHEW 173 (305)
T ss_pred eEE-EEEcCCCC---cchHHHHHHHHhcCCCCcc
Confidence 222 22443222 3345556677777754444
No 138
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.18 E-value=6.6e-06 Score=67.92 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=60.1
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCC-ce---ecCCCcCCHHhhcCcCCEEEEcc
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAG-FT---EENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G-~~---~~~~~~~~~~e~v~~ADvVILav 186 (317)
||+||| .|.+|..++..|.+. .++++.....++. .....+...+ +. ..+....+.+ ..++|+|++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcC
Confidence 589999 599999999999884 0555433322211 1111111221 11 0000011222 25899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+..+.+++..+...+++|++|+|++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 9999988877666778999999999986
No 139
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=4.8e-06 Score=79.72 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |+|+|||. |.||.+||..|.+. |+.|+++..+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 99999999 99999999999999 9988776211 1267889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... +. .++++|++|+|++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99986652 21 1389999999985
No 140
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.17 E-value=7.4e-05 Score=72.22 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021114 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY 173 (317)
Q Consensus 122 mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~~~~--~~~ 173 (317)
||..+|..+... |++|++.+...+. .. +.+.+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999887765421 11 122233322100 0011 366
Q ss_pred hhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhh
Q 021114 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~ 250 (317)
+++++||+||-++|.+...+ ++.++.+.++++++|. -+++..+..+.. .+...-++++.|+-.|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 88999999999999988754 7889999999999986 556666666654 333335799999977665531
Q ss_pred cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
-.=+.+...++++.++.+..++..+|...+
T Consensus 147 ---------lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v 176 (314)
T PRK08269 147 ---------LVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (314)
T ss_pred ---------eEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 122456778899999999999999996654
No 141
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.09 E-value=2.1e-05 Score=63.92 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=62.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.+|......++.. ..+.+++...+++.+..+ .+.+.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999888876 114565544555544333 456678774 779999987 79999999999
Q ss_pred chHHHHHHHHHhc
Q 021114 189 AAQADNYEKIFSC 201 (317)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (317)
..+.+++.+.+..
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9998888776554
No 142
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.09 E-value=2e-05 Score=66.75 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhcCcCCEEE
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~e~v~~ADvVI 183 (317)
|.|+|.|.||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777664 3444555666432111 111224577899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhh
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~ 221 (317)
++++-.+..++++.+.+++++++.|+ .--|+. ...+++
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~ 112 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE 112 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH
Confidence 99999999999999999998886554 667875 344443
No 143
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.05 E-value=1e-05 Score=73.35 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=51.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcC-cCCEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETIS-GSDLV 182 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v~-~ADvV 182 (317)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.+++ .+..+.. ...|... .+.+++.. ++|++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~-~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~ 89 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADIN-EEAVARAAELFGATV-----VAPEEIYSVDADVF 89 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHHcCCEE-----EcchhhccccCCEE
Confidence 467899 9999999999999999999999 9998755544 3333333 3335442 24455554 89999
Q ss_pred EEccCCc
Q 021114 183 LLLISDA 189 (317)
Q Consensus 183 ILavP~~ 189 (317)
+.+..-.
T Consensus 90 vp~A~~~ 96 (200)
T cd01075 90 APCALGG 96 (200)
T ss_pred Eeccccc
Confidence 9666543
No 144
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.04 E-value=5.9e-06 Score=70.10 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~v~~ADv 181 (317)
.+++| +++.|||.|-+|.+++..|.+. |.+ +.+.+|+.++..+.+...+ +.. ....+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 57889 9999999999999999999999 885 8888887655555555542 111 124567778899999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
||.++|.... .+-++.++...+. .+++|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999997654 1112333333222 3788874
No 145
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.00011 Score=73.20 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=92.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~ 172 (317)
.+|||||+|-+|.++|..+... |++| +|.|-+++. .+.+.+.|.-. ..++.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7899999999999999999999 9987 465543321 33455566332 13455
Q ss_pred HhhcCcCCEEEEccCCch----HHH------HHHHHHhcCCCCcEEEEec----Cch---hhhhhh--cccCCCCCccEE
Q 021114 173 YETISGSDLVLLLISDAA----QAD------NYEKIFSCMKPNSILGLSH----GFL---LGHLQS--IGLDFPKNIGVI 233 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~----~~~------vl~ei~~~lk~gaiVi~~~----Gv~---l~~~~~--~~~~l~~~i~vV 233 (317)
++ ++.||++++|+|..- +.+ ..+.|.+.|++|.+|++=+ |.+ ...+.+ .++.+++++. +
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~-l 157 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY-L 157 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-E
Confidence 54 559999999987431 111 2346999999999988543 432 112222 4556654432 3
Q ss_pred Eecc--CCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
..+| -.||...+++-. .+=+ -...+++..+.+.+|-+.+=...++.++.
T Consensus 158 aysPERv~PG~~~~el~~---------~~kV---IgG~tp~~~e~a~~lY~~iv~~~~~vts~ 208 (436)
T COG0677 158 AYSPERVLPGNVLKELVN---------NPKV---IGGVTPKCAELAAALYKTIVEGVIPVTSA 208 (436)
T ss_pred eeCccccCCCchhhhhhc---------CCce---eecCCHHHHHHHHHHHHHheEEEEEcCCh
Confidence 3333 122433322221 1221 12345667777777776665554444444
No 146
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.98 E-value=7.8e-05 Score=70.71 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~e 197 (317)
|..||-.+... |++|+....+ +.+.++.-...|+.. .+|..++++.+++.+|-+|-...+ .+.++
T Consensus 33 Ga~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v----v~dD~eaa~~~Ei~VLFTPFGk~T~~Iare 102 (340)
T COG4007 33 GARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV----VSDDAEAAEHGEIHVLFTPFGKATFGIARE 102 (340)
T ss_pred chHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE----ecCchhhhhcceEEEEecccchhhHHHHHH
Confidence 66777777777 9998887543 234577888899885 567778999999999999998554 67889
Q ss_pred HHhcCCCCcEEEEecCch---h-hhhhhcccCC-CCCccEEEeccCC-CChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 198 IFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~---l-~~~~~~~~~l-~~~i~vV~vhPn~-pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
|.+++..|++|.-.+-++ + ..++ ..+.. ++++.+-..||-+ ||+...+.|.-+ |.+. .-.+-.++
T Consensus 103 i~~hvpEgAVicnTCT~sp~vLy~~LE-~~Lr~kR~dVGvssmHPAgvPGtp~h~~yvia------gr~t--~g~elATe 173 (340)
T COG4007 103 ILEHVPEGAVICNTCTVSPVVLYYSLE-GELRTKREDVGVSSMHPAGVPGTPQHGHYVIA------GRST--EGKELATE 173 (340)
T ss_pred HHhhCcCCcEecccccCchhHHHHHhh-hhhcCchhhcCccccCCCCCCCCCCCceEEEe------ccCC--CceeeccH
Confidence 999999999998555432 2 2222 22232 3567777888843 555533333322 1110 01224678
Q ss_pred HHHHHHHHHHHHcCCC
Q 021114 272 RATNVALGWSVALGSP 287 (317)
Q Consensus 272 ea~e~a~~l~~alG~~ 287 (317)
+.+++..+++++.|..
T Consensus 174 EQi~r~velaes~Gk~ 189 (340)
T COG4007 174 EQIERCVELAESTGKE 189 (340)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999999953
No 147
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.93 E-value=1.9e-05 Score=78.99 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=66.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+.| ++|+|||.|.||..+++.|+.. |. +|++.++..++..+.+.+.|... ....+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~--~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEA--IPLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcE--eeHHHHHHHhccCCEEEEC
Confidence 4788 9999999999999999999988 87 67777776554445666655321 0124566788999999999
Q ss_pred cCCchH---HHHHHHHHh-cCCCCcEEEEecC
Q 021114 186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~---~~vl~ei~~-~lk~gaiVi~~~G 213 (317)
++.... .+.++.... .-..+.+++|.+-
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 985543 234443221 1123467778763
No 148
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=2.4e-05 Score=75.41 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=60.6
Q ss_pred CEEEEEeccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
++|+|||+|.||..+++.+.. . + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+|+.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~------~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR------PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISC 195 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEE
Confidence 899999999999999987765 3 4 46878887655444444432 4 332 4688899999999998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++|.. ..++.. +.+++|++|..++
T Consensus 196 aT~s~--~pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 196 ATLST--EPLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred eeCCC--CCEecH--HHcCCCCEEEeeC
Confidence 88865 233432 4578998544333
No 149
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.87 E-value=2.9e-05 Score=76.44 Aligned_cols=93 Identities=25% Similarity=0.295 Sum_probs=77.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.-++| |++.|.|+|-.|..+|+.|+.. |.+|++..-.+-+.+ +|.-.||. +..++|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~Al-eA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRAL-EAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHHH-HHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 45788 9999999999999999999998 999988876654444 56678998 46899999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+-... ++. +.+..||+|++|..++-|
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHF 298 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHF 298 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEeccccc
Confidence 88744 454 777889999999887766
No 150
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.84 E-value=6.6e-05 Score=75.17 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=66.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..++| ++|+|||.|.||..+++.|+.. | .+|++.+++..+..+.+.+.|... ....+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~--i~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEA--VKFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeE--eeHHHHHHHHhhCCEEEE
Confidence 35889 9999999999999999999998 8 567777776554444565555421 013467788899999999
Q ss_pred ccCCchHH---HHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQA---DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~---~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... +.++.....-+...+++|.+
T Consensus 247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 99755431 23333221111234677776
No 151
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.83 E-value=4e-05 Score=75.69 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceec-C-CCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-N-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~-~~~~~~~e~v~~ADvVIL 184 (317)
+.+ .++.|||.|.+|...++.++.. |.+|++.+++.++ .+.+ ...|.... . ....++.+.++++|+||.
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~-~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDR-LRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHhcCceeEeccCCHHHHHHHHccCCEEEE
Confidence 566 8899999999999999999999 9987776655332 3333 23333110 0 001245678899999999
Q ss_pred ccCC--chHHHHH-HHHHhcCCCCcEEEEec
Q 021114 185 LISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~--~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
+++. .....++ ++....|+++.+|+|++
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 9853 2223344 46778899999999765
No 152
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.83 E-value=5e-05 Score=73.64 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=63.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+++||||+|.||..+++.+.... ...+|.++++..++..+.+. +.|... ..+.+.+|++++||+|+.+||.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 78999999999999998886641 02356666665443332222 345311 1256899999999999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
.. .++. .+.+|||+.|.-++...
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCCC
Confidence 42 2332 23468999988776553
No 153
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.82 E-value=8.2e-05 Score=69.48 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC-------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------------- 166 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~------------- 166 (317)
++.++|||.|.||..+|+-...+ |++|++.++. ++.+.+|.+ .+..+..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999998 9998776554 333333321 1221100
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 167 -~~~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
...++..++++++|+||=++-.+... ++++++-...|+.++++ ..+++.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 11456778889999998776655433 36667766778888886 788887766654 333445788888877777
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.|+ |.+ +.-+.+++++.......+.+.+|...+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKttV 193 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKTTV 193 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCce
Confidence 753 222 225668888999999999999997654
No 154
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=4.9e-05 Score=72.89 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|.+ |..++..|... |..|++...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 36899 99999999988 99999999988 9888664321 2377889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-.. ++.. +++|+|++|+|++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999533 4443 6789999999986
No 155
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.75 E-value=0.00017 Score=67.60 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=88.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+ |.||..+++.+.+. .+++++...+.+.+........|+.. ..+++++++++|+|+.++|+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~~ 72 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPEA 72 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHHH
Confidence 78999998 99999999988763 15776655555433222222234432 4688998989999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCC-hhh-HHHHhhcccccCCCceEE-EEec
Q 021114 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG-PSV-RRLYVQGKEINGAGINSS-FAVH 266 (317)
Q Consensus 191 ~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg-~~~-r~lf~~G~e~~g~G~~~i-itp~ 266 (317)
..+++...+.+ |. +|+-..|+.....+.... ..+.+.++ ..||..- ..+ ..+-+......|. ..+- +--|
T Consensus 73 ~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~-aa~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l~~-~d~ei~E~H 146 (257)
T PRK00048 73 TLENLEFALEH---GKPLVIGTTGFTEEQLAELEE-AAKKIPVV-IAPNFSIGVNLLMKLAEKAAKYLGD-YDIEIIEAH 146 (257)
T ss_pred HHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH-HhcCCCEE-EECcchHHHHHHHHHHHHHHHhcCC-CCEEEEEcc
Confidence 87766655443 44 343455766543332111 12344443 3343321 111 1111110001111 1222 2333
Q ss_pred c----C-CCHHHHHHHHHHHHHcCC
Q 021114 267 Q----D-VDGRATNVALGWSVALGS 286 (317)
Q Consensus 267 ~----d-~~~ea~e~a~~l~~alG~ 286 (317)
. | +++.++.+++.+.+..+.
T Consensus 147 H~~K~DaPSGTA~~l~~~i~~~~~~ 171 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEAIAEARGR 171 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 3 3 368899999988887763
No 156
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.74 E-value=9.2e-05 Score=65.70 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| ++|.|||.|.| |..+|+.|.+. |.+|++..|.. .++.+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 57899 99999999997 77799999998 88877766541 256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999754 3431 1357788888776
No 157
>PLN00203 glutamyl-tRNA reductase
Probab=97.72 E-value=0.00014 Score=75.01 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.|.+ ++|+|||.|.||..+++.|... |. +|++.+|+.++..+.+.+. |....-....+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3778 9999999999999999999988 86 5777777755544444443 221000113467788999999999
Q ss_pred ccCCchH---HHHHHHHHhcCC---CCcEEEEec
Q 021114 185 LISDAAQ---ADNYEKIFSCMK---PNSILGLSH 212 (317)
Q Consensus 185 avP~~~~---~~vl~ei~~~lk---~gaiVi~~~ 212 (317)
+|+-..- .+.++++.+.-+ ...+++|.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 9864332 235554432211 113566664
No 158
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00013 Score=70.13 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.4
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||.|. +|..+|+.|... |..|++..++. .++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999988 999999999988 88887776431 257788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++-.. ++.. +.+|+|++|+|++-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998744 3332 24789999999875
No 159
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.69 E-value=0.00016 Score=70.19 Aligned_cols=126 Identities=21% Similarity=0.179 Sum_probs=88.7
Q ss_pred cccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
++-|-++=+.+-=+|-+..|.++. |--. . .-.-+.| |...|.|+|..|..-|+.||.+ |..|++..-..-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~D-gikr-a-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLD-GIKR-A-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhhh-hhhh-h-hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 334566666555566666665332 1000 0 1133667 8999999999999999999999 988887765544
Q ss_pred ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 152 ~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
..+ +|.-.|+. +.+++|++++.|+++.++-...+ +..+.+..||.++||...+-+.
T Consensus 249 ~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 434 44456887 57999999999999998876443 3457888999999998766553
No 160
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=0.00033 Score=66.02 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=52.2
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
|+||||||+|.||..+++.+.+. .++++....+......+.... .+... +.+++++-.+.|+|+.++|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999875 034443333322211111111 23332 45787775569999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 72 ~~~~e~~~~aL~ 83 (265)
T PRK13303 72 AALKEHVVPILK 83 (265)
T ss_pred HHHHHHHHHHHH
Confidence 887776665544
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.63 E-value=0.00012 Score=65.10 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=63.3
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS 177 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~-~~~~~~~e~v~ 177 (317)
.++++ +++.|+|. |.+|..+++.|.+. |.+|++..|+.++..+.+... +. ...+ ....+..++++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 36788 99999995 99999999999988 888877776543322222211 11 1100 00123347889
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|+||.++|..... ........+++.+++|+.-
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~~ 130 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVNA 130 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEccC
Confidence 999999999977651 1122223456778887653
No 162
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.62 E-value=0.00016 Score=59.90 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=58.1
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEE-EecCC--cccHHHHHH--CCceecCCCc-CCHHhhcCcCCEEEEc
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTL-GDIYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~~~~~-~~~~e~v~~ADvVILa 185 (317)
||+||| .|.+|..+.+.|.+. ..++++. ..++. ...+..... .++.+ -.. ....+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1345433 33332 122222211 11211 001 1123445999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+|.....++.+++ +++|..|+|.++.
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9998888887776 4578899998874
No 163
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00013 Score=70.09 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.. ++++|||.|.||..+++.+... .+. ++.++.|..++..+.+.+. ++.. ...+.++++.++|+|+.
T Consensus 124 ~~-~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PP-GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVVT 194 (304)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEEE
Confidence 45 8999999999999999999763 054 5777777654444444333 2221 13578899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+||... .++.. .+|||+.|.-++...
T Consensus 195 aT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 195 ATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred ccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 999764 34432 379999988777654
No 164
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.51 E-value=0.00035 Score=70.15 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=71.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..|++ +++.|||.|-||.-.|+.|... |. ++++.+|.-++..+.|.+.|... -...++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999999 85 78889998888888888888442 235577788999999999
Q ss_pred ccCCc-hHH--HHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDA-AQA--DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~-~~~--~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|.-. .+. +.+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 97633 222 244443332222 3455554
No 165
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.0003 Score=68.08 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||+|.||..++..+... .+. +|.++.|..++..+.+. +.++.. ....+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8999999999999999887543 154 46666665444333332 224321 12567899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|... .++. ..+++|+.|+-+++..
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCCC
Confidence 9662 2443 5679999998777653
No 166
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.47 E-value=0.0012 Score=62.31 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=88.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++|+||| +|.||..+++.+.+. .+++++...+ .++... ..+.. .|+.. ..+++++...+|+|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~DvV 72 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDVL 72 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCEE
Confidence 6899999 699999999999864 1677665555 322111 11111 23332 45788876679999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCC-CccEEEeccCCCChh--hHHHHh-hcccccCC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPK-NIGVIAVCPKGMGPS--VRRLYV-QGKEINGA 257 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~~-~i~vV~vhPn~pg~~--~r~lf~-~G~e~~g~ 257 (317)
|.++|+....+++...+.+ |. +|+-..|++....+.......+ ++. +...||+.--. +..+.+ ..+...+.
T Consensus 73 IdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~~ 148 (266)
T TIGR00036 73 IDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGDY 148 (266)
T ss_pred EECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccCC
Confidence 9999998887777665543 33 4554567754333221111111 233 34445554332 111111 11111112
Q ss_pred CceEEEEecc-----CCCHHHHHHHHHHHHHcCC
Q 021114 258 GINSSFAVHQ-----DVDGRATNVALGWSVALGS 286 (317)
Q Consensus 258 G~~~iitp~~-----d~~~ea~e~a~~l~~alG~ 286 (317)
.+- |+--|. -+++.++.+++.+.+..+.
T Consensus 149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 112 233343 2378899999888877763
No 167
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.46 E-value=0.00042 Score=67.63 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=51.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
.+|+|||+|+||..+++.+.+. .+++++...+++... ......+... ..+.++++.+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999999765 167765444544211 1112234332 34677788999999999998776
Q ss_pred HHHHH
Q 021114 192 ADNYE 196 (317)
Q Consensus 192 ~~vl~ 196 (317)
.+...
T Consensus 74 ~~~~~ 78 (324)
T TIGR01921 74 IPEQA 78 (324)
T ss_pred HHHHH
Confidence 55443
No 168
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.44 E-value=0.0011 Score=64.90 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCcee-----------cCC---CcCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE-----------ENG---TLGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~-----------~~~---~~~~~~e~ 175 (317)
+.||||+|+|.||+.+++.+.+. .+++++...+.+.+... .+.+.|+.. .+. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 36899999999999999998764 16776655554332222 233333210 000 02467778
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.++|+|+.++|.....+..+... +.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence 889999999999987777666443 457788888874
No 169
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.44 E-value=0.00038 Score=58.31 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=59.0
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++|+|+|+ |.||..+++.+.+. .++++..+.++..+.. ... ...|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999983 1787766655543100 000 0223332 46899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchh
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l 216 (317)
|-.+-+....+.++....+ |. +|+=+.|+.-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999776666666655544 33 4555778753
No 170
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.42 E-value=0.0012 Score=62.81 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.2
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhcCcCCEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV 182 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~---~~~~~~~e~v~~ADvV 182 (317)
|+||+|||.|.||..+|..+... |+ ++++.+...+.....+.+ ...... + ....+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 48999999999999999999877 65 676666543322111211 110000 0 012345 558999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 171
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00044 Score=66.24 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|. .|.+++..|.+. |..|++..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 47899 9999999997 999999999988 8887776652 1256677799999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++... .+. .+.+++|++|+|++
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996322 333 13479999999876
No 172
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00056 Score=65.66 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||-|. .|..+|.-|... |..|++..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888766432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +.. +++|+|++|+|++
T Consensus 209 avG~p~~---v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---ccH--HHcCCCcEEEEcc
Confidence 9954332 221 5679999999987
No 173
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.41 E-value=0.00027 Score=71.02 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
..+.| ++|.|||.|-||..++.+|.+. |. ++++.+|+..+..+.+.+.+ ... ....++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 56889 9999999999999999999988 86 67888887665555666554 211 01345678899999999
Q ss_pred EccCCch
Q 021114 184 LLISDAA 190 (317)
Q Consensus 184 LavP~~~ 190 (317)
.||+...
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998644
No 174
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.39 E-value=0.00039 Score=68.35 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=63.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.|+..+++.+..-. .+ +|.++.|..++..+.+.+ .|+.. ....+.++++++||+|+.+|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEecC
Confidence 78999999999999998887741 33 577777765433332222 23321 114689999999999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
......+++. +.+|||+.|..++...
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCCC
Confidence 5432234431 3568999888776553
No 175
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.39 E-value=0.0004 Score=67.34 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=63.3
Q ss_pred CEEEEEeccchHHHHHHHHHh-hhhhhcCCc-eEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++++|||.|.||..+++.|.. . +. +|.+++|..++..+.+.+. |+.. ....+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 4 54 5777777655444444332 4421 1146789999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
||... .++. ...+++|+.+..++.
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMGS 225 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeCC
Confidence 98743 2333 124789998876554
No 176
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.39 E-value=0.00038 Score=66.96 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||.|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ....+.+|++.+||+|+.+|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 8999999999999999998874 144 577777765543333322 24321 12568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+-.. .+++ ...+|||+.|..++...
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCCC
Confidence 9643 3443 13568898888776653
No 177
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.35 E-value=0.00034 Score=65.72 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=60.8
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hcCcCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e-~v~~ADvVI 183 (317)
.++ +++.|+|.|.+|.+++..|.+. |.+|++.+|..++..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 567 8999999999999999999998 888888777644433333332 2211 123333 346899999
Q ss_pred EccCCchHHHHHH-H-HHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYE-K-IFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~-e-i~~~lk~gaiVi~~~ 212 (317)
.++|......+-+ . ....++++.+++|+.
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~ 214 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMV 214 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence 9999853211100 0 123467788888764
No 178
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.34 E-value=0.0011 Score=61.85 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=57.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|||||+|.||..+...+++- .-+++.++.+|++.+.. +.....+.. ...+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 01345444555543322 222233333 25789999999999999999999
Q ss_pred HHHHHHHHHhc
Q 021114 191 QADNYEKIFSC 201 (317)
Q Consensus 191 ~~~vl~ei~~~ 201 (317)
..+...+++..
T Consensus 73 v~e~~~~~L~~ 83 (255)
T COG1712 73 VREYVPKILKA 83 (255)
T ss_pred HHHHhHHHHhc
Confidence 88877776654
No 179
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.34 E-value=0.0019 Score=62.04 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=62.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||.|+||.-.+..+.+. .+.++....+.+.++ .+.+++.|+.. ...+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 5799999999999998877754 145554334433332 45677788753 1347788775 6799999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
...+.++..... +.|+.|++-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 998887766544 35777765543
No 180
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.34 E-value=0.001 Score=58.79 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=53.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..++++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 46899 999999988 5999999999999 9887664332 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++.-... ++ .+.+|+|++|+|++-.
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--CE
T ss_pred eeccccc---cc--cccccCCcEEEecCCc
Confidence 9986432 32 2467999999998754
No 181
>PRK06046 alanine dehydrogenase; Validated
Probab=97.33 E-value=0.00063 Score=65.93 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=59.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||+|.||..+++++... .+.+ +.++++..++..+.+.+ .|+.. ....+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999754 1554 44444443322222222 24321 11457888887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|... .+++ .+.+|+|+.|..++...
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 9753 3333 13468999988777653
No 182
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.33 E-value=0.00032 Score=66.32 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~v~~ADvVI 183 (317)
.++++ +++.|+|.|-+|.+++..|... | .+|++.+|+.++..+.+.+.+... .... .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 36788 9999999999999999999988 8 578888887544433333322110 0001 13456778999999
Q ss_pred EccCCchHHH--HHHHHHhcCCCCcEEEEe
Q 021114 184 LLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 184 LavP~~~~~~--vl~ei~~~lk~gaiVi~~ 211 (317)
.++|...... ...-....++++.+|+|+
T Consensus 191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Di 220 (278)
T PRK00258 191 NATSAGMSGELPLPPLPLSLLRPGTIVYDM 220 (278)
T ss_pred ECCcCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999765421 101012345667777765
No 183
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.31 E-value=0.0017 Score=62.54 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.||..+|..+... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 76 666555432211112110 01111 1356666 78999
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999987
No 184
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.31 E-value=0.0071 Score=56.25 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=90.1
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhcCcCCEEEEccCCch
Q 021114 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 121 ~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~v~~ADvVILavP~~~ 190 (317)
.||..+|..|.+. |++|.+..|. +..+.-++.|+...+ + ...++++ +...|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3789999999998 9988877764 334444555643211 1 1123344 678999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 191 QADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
..+.++.+.+++.++++|+ ..-|+. ...+.. .++++ +++ ......|+.. +..|.|...
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~- 137 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK- 137 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-
Confidence 8889999999998887765 556774 333433 33432 233 2333344422 112234433
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
|...+... +..+.+.+++...|........+...
T Consensus 138 iG~~~~~~-~~~~~l~~~l~~~~~~~~~~~di~~~ 171 (293)
T TIGR00745 138 IGDYVGEN-EAVEALAELLNEAGIPAELHGDILAA 171 (293)
T ss_pred EecCCCch-HHHHHHHHHHHhCCCCCEecchHHHH
Confidence 44333222 45566677788877665554443333
No 185
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.30 E-value=0.00086 Score=57.94 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| ++|.|||-+ ..|..++..|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 9887665432 1267789999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-.. +++ .+.+|+|++|+|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence 998763 333 24579999998765
No 186
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00094 Score=65.37 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
...++|||.|.|+..+.+.++.- +++ +|.++.|+.+...+.+ .+.+... -....+.++++++||+|+.+|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEec
Confidence 37899999999999999999885 244 5667777654433333 2233210 123678999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|... .++. .+.++||+.|..+++.
T Consensus 204 ~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 204 PSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred CCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 9877 3332 2356799999877764
No 187
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.27 E-value=0.0022 Score=62.14 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcC-----cCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v~-----~ADvVIL 184 (317)
.+|||||+|++|..++..+.+. .+.++....+.+. +..+.+++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6899999999999988887764 1456544444433 3345677788753 2357888884 5899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|...+.++..... +.|+.++|-..
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999988877766554 45888887654
No 188
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.26 E-value=0.001 Score=68.67 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=68.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--C----C-----C--cCC---
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD--- 171 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~-----~--~~~--- 171 (317)
..+ .++.|||.|.+|...++.++.. |..|++.+++ ....+.+++.|...- + + + ..+
T Consensus 162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 445 7999999999999999999998 9886655544 445677777776420 0 0 0 000
Q ss_pred -------HHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 172 -------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 172 -------~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
+.+.++++|+||.++ |-.....++ ++....||+|++|+|.+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345678999999987 222233444 47788999999999775
No 189
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.0012 Score=65.17 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=96.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HH-CC--ceecCCCcCCHHhh---cCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AG--FTEENGTLGDIYET---ISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~-~G--~~~~~~~~~~~~e~---v~~ADvVIL 184 (317)
..||.||++.||+.++.|+.+. |+.|.+++|..++.-+.. .+ .| ++. ..+++|. ++.--.|+|
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence 5699999999999999999999 999998998765433221 11 12 331 4577776 467789999
Q ss_pred ccCCchHHH-HHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
.++-...++ +++++.++|.+|.+|+|-+-- +....++ .-.+++=||+.--.+ |.|.-=.|
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G- 141 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG- 141 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-
Confidence 999877765 778999999999999987642 1222221 112355666533322 21111112
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALG 285 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG 285 (317)
+. +.|..+ .+++..++.+++.+-
T Consensus 142 PS-lMpGg~--~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 142 PS-LMPGGS--KEAWPHIKDIFQKIA 164 (487)
T ss_pred Cc-cCCCCC--hHHHHHHHHHHHHHH
Confidence 22 345554 789999999998874
No 190
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.25 E-value=0.0017 Score=59.98 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=64.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce---EEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~ 171 (317)
..+++ ++|.|+|.|.+|.++|..|.+. |.. +++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 45788 9999999999999999999988 864 77777762 221 22333332111 0136
Q ss_pred HHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.++++++|+||-++|+.... ++....|.++.++.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999855433 24555666777777654
No 191
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.23 E-value=0.0011 Score=63.00 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=55.0
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCC--ceEEEEe-cCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEc
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G--~~Vivg~-r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILa 185 (317)
.+|||||+|.+++ ..+..+++. + +.++... +..++..+.+.+.|+.. .+.+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 6899999996664 578888776 4 3433333 44344455677778741 26799999986 5999999
Q ss_pred cCCchHHHHHHH
Q 021114 186 ISDAAQADNYEK 197 (317)
Q Consensus 186 vP~~~~~~vl~e 197 (317)
+|+..+.++..+
T Consensus 75 tp~~~H~e~~~~ 86 (342)
T COG0673 75 TPNALHAELALA 86 (342)
T ss_pred CCChhhHHHHHH
Confidence 999999887643
No 192
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.22 E-value=0.0018 Score=50.59 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..+++ ++++|+|.|.+|..++..|.+. +. ++.++++ |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44778 9999999999999999999987 54 4443322 99999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998755422 2345567888888865
No 193
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.21 E-value=0.0018 Score=63.28 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hcCcCCEEEEcc
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~e-~v~~ADvVILav 186 (317)
+++|+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +....+.++ ...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 379999996 99999999999875 14555443433221111111111 1100 001222222 457899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|...+.++..+..+ .|+.|+|.++-
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcc
Confidence 99888887776643 58889987763
No 194
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.19 E-value=0.0019 Score=58.66 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=58.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .-.++.+.++|+||
T Consensus 5 ~l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~--~~~~~~l~~adlVi 75 (202)
T PRK06718 5 MIDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK--EFEPSDIVDAFLVI 75 (202)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec--CCChhhcCCceEEE
Confidence 357999 9999999999999999999999 9887766544323333333334 221001 11134578999999
Q ss_pred EccCCchHHHHHHHHH
Q 021114 184 LLISDAAQADNYEKIF 199 (317)
Q Consensus 184 LavP~~~~~~vl~ei~ 199 (317)
.++.+....+.+.+..
T Consensus 76 aaT~d~elN~~i~~~a 91 (202)
T PRK06718 76 AATNDPRVNEQVKEDL 91 (202)
T ss_pred EcCCCHHHHHHHHHHH
Confidence 9999988776555443
No 195
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.18 E-value=0.0055 Score=60.22 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=70.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhh-cCCceEEEEecCCcc-----cHHHHHH---------CCcee-cC-CCcCCHHh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSR-----SFAEARA---------AGFTE-EN-GTLGDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~-~~G~~Vivg~r~~~~-----s~~~A~~---------~G~~~-~~-~~~~~~~e 174 (317)
.+|+|||.|+=|.++|+.+...-.+- -|..+|..|.+...- .+.+-.. .|+.. ++ ....|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 79999999999999999998762221 223345544432110 0000000 01000 00 12568999
Q ss_pred hcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch
Q 021114 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~ 215 (317)
++++||++|..+|.+-..++++++..++|++..-| .+.|+.
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 99999999999999999999999999999999854 777764
No 196
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.17 E-value=0.0041 Score=50.20 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=59.7
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccCCc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP~~ 189 (317)
|.|+|+|.+|..+++.|++. +.++++.+ .+++..+.+.+.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87765544 44556778888885432233334332 357899999999987
Q ss_pred hHHHHHHHHHhc-CCCCcEEEEecC
Q 021114 190 AQADNYEKIFSC-MKPNSILGLSHG 213 (317)
Q Consensus 190 ~~~~vl~ei~~~-lk~gaiVi~~~G 213 (317)
...-.+-..+.. .+...++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665444333333 333344444443
No 197
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.001 Score=64.48 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.|+..+++.+..- +.+ +|.++.|..++..+.+ .+.|+.. ....+.++++++||+|+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEecC
Confidence 8999999999999999998764 133 5777777655433222 2224432 124689999999999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
-.. .+++ .+.+|||+.|.-+++..
T Consensus 202 s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 202 SRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 543 3443 13578999988777653
No 198
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.15 E-value=0.0026 Score=60.59 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=52.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVILavP~~~ 190 (317)
+||||||+|.||..+++.|.+... .++++...+++.....+.. ..... .+.+++++ ..+.|+|+=|.++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~---~~~~l~~V~~~~~~~~~~~-~~~~~----~~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAA---QPCQLAALTRNAADLPPAL-AGRVA----LLDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCC---CceEEEEEecCCHHHHHHh-hccCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence 689999999999999999876300 0345544455543222222 11222 25688886 578899998888887
Q ss_pred HHHHHHHHHh
Q 021114 191 QADNYEKIFS 200 (317)
Q Consensus 191 ~~~vl~ei~~ 200 (317)
..+....++.
T Consensus 75 v~e~~~~iL~ 84 (267)
T PRK13301 75 IAEHAEGCLT 84 (267)
T ss_pred HHHHHHHHHh
Confidence 7776655544
No 199
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.12 E-value=0.0012 Score=64.11 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=61.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||.|.+|.+++..+... .+. +|.++.|..++..+.+.+ .|+.. ....++++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 8999999999999999998863 044 577777664443333332 24331 12468899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|... .++.. ..+++|+.|..++.
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg~ 228 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMGS 228 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeCC
Confidence 8753 34432 23678887765443
No 200
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.12 E-value=0.0011 Score=67.53 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..++| ++++|||.|.+|.+++..|.+. |.++++.+|..++..+.+...+... ....+.. .+.++|+||.+
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45788 9999999999999999999998 9888777765433333333322110 0012222 25789999999
Q ss_pred cCCch
Q 021114 186 ISDAA 190 (317)
Q Consensus 186 vP~~~ 190 (317)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99875
No 201
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.0013 Score=63.16 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-| ..|..+|..|.+. |..|++.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 47899 999999999 8999999999988 8888765321 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++..... +. .+++|+|++|+|++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9976443 32 23459999999986
No 202
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.09 E-value=0.00041 Score=66.98 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=53.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH--HC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~~-G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.||..+++.+...+ ++ +|.++.|+.++..+.+. +. |+.. ....+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 78999999999999999998751 44 56677766433222222 22 4332 125689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
-.....+++ ...+++|+.|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 765212333 2357889888876654
No 203
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0012 Score=64.33 Aligned_cols=133 Identities=19% Similarity=0.073 Sum_probs=82.3
Q ss_pred cccccchhhhhhcccccc-hhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 72 LDFETSVFKKDAISLANR-DEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~-~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+--+.++-..-+....| -|. .++|+-.+--..-.... -++.|||.|-.|..-|+-+... |.+|.+.+.+.
T Consensus 130 LaPMSeVAGrla~q~Ga~~lek-~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 130 LAPMSEVAGRLAAQAGAYYLEK-TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred cchHHHHhhhHHHHHHHHHHHh-ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 333444444433333333 344 66666544212122223 5899999999999999987766 88898887764
Q ss_pred cccHHHHHHCCcee--cCCCcCCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 151 SRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 151 ~~s~~~A~~~G~~~--~~~~~~~~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+....-...+... .-.+...++|.+.++|+||-++ |-.....++ +++.++||||++|+|++
T Consensus 202 ~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 202 DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 33222222223221 0122346788999999999764 555666644 58899999999998764
No 204
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0043 Score=58.26 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=88.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.+||||.|..|.+......+- ++..- +. .+++.+.++. .+.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~cs-~i--~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVACS-AI--SSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heeeh-hh--hhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6799999999999955544333 33321 11 1233334433 2222 2244444556678888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh-hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe-
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp- 265 (317)
+..+.++... ..-+||++|++++|+.- +.+.. .-..+.--...||++..+...+-.++. .+. + |..
T Consensus 77 d~~~s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~-~-~~i~ 144 (289)
T COG5495 77 DALYSGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDT-I-FGIT 144 (289)
T ss_pred HHHHHHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----ccc-E-EEee
Confidence 7644333322 23579999999999863 22221 112233446799999988766655544 222 3 333
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+.| +.....++.|..-+|+..++
T Consensus 145 eaD--~~g~ai~q~la~emgg~~f~ 167 (289)
T COG5495 145 EAD--DVGYAIVQSLALEMGGEPFC 167 (289)
T ss_pred ccc--ccccHHHHHHHHHhCCCcee
Confidence 333 34566788999999998765
No 205
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.07 E-value=0.0041 Score=60.21 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=44.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~A 179 (317)
.+. +||+|||.|.||.++|..+... | .++++.+...+.....+.+ .+....-....+.+ .+++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 345 8999999999999999998887 7 3655555443221111211 11100000124555 77999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+||++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999998
No 206
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.04 E-value=0.0039 Score=59.78 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=45.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|||.|.+|.++|..|... |. ++++.++..+.....+.+. +... .....+. +.+++||+|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~~~~~-~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIKAGDY-SDCKDADIV 72 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEEcCCH-HHhCCCCEE
Confidence 5899999999999999999988 74 6666666544322222221 1100 0012344 457899999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|+++..
T Consensus 73 Iitag~ 78 (306)
T cd05291 73 VITAGA 78 (306)
T ss_pred EEccCC
Confidence 999875
No 207
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.04 E-value=0.0032 Score=60.41 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=80.7
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hh-hhhhcccCCCCCccEE
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSIGLDFPKNIGVI 233 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~---l~-~~~~~~~~l~~~i~vV 233 (317)
+.|+.. .+|-.|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+. +- .++. .=++++.+.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 367764 5677789999999999999887 5789999999999999999877663 22 2222 226789999
Q ss_pred EeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
..|| +..+.+. |+.+. -.+..++++++...+|.++.|..
T Consensus 199 S~HP-aaVPgt~-----Gq~~i---------~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 199 SYHP-GAVPEMK-----GQVYI---------AEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred ccCC-CCCCCCC-----Cceec---------ccccCCHHHHHHHHHHHHHhCCC
Confidence 9999 3344431 43222 35678899999999999999965
No 208
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.01 E-value=0.0036 Score=58.81 Aligned_cols=155 Identities=11% Similarity=0.121 Sum_probs=99.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceec----------CCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~~~~~ 171 (317)
.||+|+|.|++|++.|..+... |++|..++-..+ +.+....+.|.... -+.+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999998 999877654321 11122223332110 023568
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEEEecCch-hhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi~~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
++|++++|=.|-=|+|..-.. .++.++-..+.|..++.-+.+.. ...+-+ .+-.....+-.||--|-. |
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPy-----f 149 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPY-----F 149 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCc-----c
Confidence 999999987777788865543 36677666676766665443332 222221 222345678899944321 1
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
--. .=+.|+.-++++.+++..++.+.+|-..+
T Consensus 150 iPL---------vElVPaPwTsp~tVdrt~~lM~sigq~pV 181 (313)
T KOG2305|consen 150 IPL---------VELVPAPWTSPDTVDRTRALMRSIGQEPV 181 (313)
T ss_pred cch---------heeccCCCCChhHHHHHHHHHHHhCCCCc
Confidence 111 12578888999999999999999995443
No 209
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0026 Score=61.17 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=60.4
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||-+. .|..+|.-|... |..|.+.... ..++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8887665422 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++--.. ++. .+.+|+|++|+|++-
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence 776432 232 236799999999874
No 210
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.00 E-value=0.004 Score=61.04 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=58.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEE-EEecCC--cccHHHHHHCC----ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKG--SRSFAEARAAG----FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~--~~s~~~A~~~G----~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++|+|||. |.+|..+++.|.+. .+.+++ +..++. .+... ...+ .........+.++++.++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVS--EVHPHLRGLVDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChH--HhCccccccCCceeecCCHHHhhcCCCEEE
Confidence 58999997 99999999999865 134554 222221 11121 1121 1000000125566667899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+|+|.....++..++.+ .|+.|+|.++.
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 99999888777776644 58889987764
No 211
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.98 E-value=0.0045 Score=59.59 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~~~~~~~e~v~~ADvVIL 184 (317)
|||+|||.|.+|.++|..|... |. ++++.++..+.....+... .... . .....+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 84 5655554432221122211 1100 0 0011344 56899999999
Q ss_pred ccCC
Q 021114 185 LISD 188 (317)
Q Consensus 185 avP~ 188 (317)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
No 212
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0022 Score=61.52 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||.+ ..|..+|..|... |..|.+..++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47899 999999999 8999999999888 88877665321 267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-. .++.+ .++|+|++|+|++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99743 33331 1259999999887
No 213
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.98 E-value=0.0052 Score=59.08 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=81.5
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEE
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~ 234 (317)
+.|+.. .+|-.|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+. +-++-+ .+. ++++.+..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 467764 5677889999999999999887 5789999999999999999877663 222222 122 57899999
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.|| +..+.+. |--|+ ..+..++++++...+|.++.|..
T Consensus 198 ~HP-aaVPgt~------------~q~Yi--~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 198 YHP-GCVPEMK------------GQVYI--AEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred cCC-CCCCCCC------------CceEe--ecccCCHHHHHHHHHHHHHhCCC
Confidence 999 3333321 22343 47889999999999999999965
No 214
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.97 E-value=0.0052 Score=61.00 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=53.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcC---CHHhh-cCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~---~~~e~-v~~ADvVILav 186 (317)
|+|.|+|+|.+|..+++.|++. |+++++..+. .+..+.+.+ .|+..-.+... .++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9987655544 333444443 44321111112 23445 78999999999
Q ss_pred CCchHHHHHHH
Q 021114 187 SDAAQADNYEK 197 (317)
Q Consensus 187 P~~~~~~vl~e 197 (317)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766544433
No 215
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0031 Score=63.03 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCC---c--eecC-CCcCCHHhhcCcCCEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEEN-GTLGDIYETISGSDLVL 183 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~-~~~~~~~e~v~~ADvVI 183 (317)
+++|.|||+|.+|..+|..|.+. | .+|+++.|+.++ ++++.... + ..-| .....+.+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 48999999999999999999888 7 789888887443 33443332 1 1101 01224568899999999
Q ss_pred EccCCchHHHHHH
Q 021114 184 LLISDAAQADNYE 196 (317)
Q Consensus 184 LavP~~~~~~vl~ 196 (317)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999988776654
No 216
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.002 Score=61.51 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~v~~AD 180 (317)
..+++ +++.|||.|-+|.+++..|... |. ++++.+|..++..+.+...+ ... -....+..+.++++|
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD 194 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD 194 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence 35678 9999999999999999999998 87 67777776554444443321 110 001234456778999
Q ss_pred EEEEccCCch
Q 021114 181 LVLLLISDAA 190 (317)
Q Consensus 181 vVILavP~~~ 190 (317)
+||.++|...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999753
No 217
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0028 Score=60.82 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999988 8999999999988 8877654321 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975432 32 24578999999986
No 218
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.0061 Score=56.25 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=55.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-HH-HCCceecCCCcCC---HHhh-cCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR-AAGFTEENGTLGD---IYET-ISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~-~~G~~~~~~~~~~---~~e~-v~~ADvVILa 185 (317)
|+|.|||+|..|.++|+.|.+. |++|++.++..+ ..+. +. +.+...-.+..++ +.++ +.++|+++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~-~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEE-RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHH-HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 6899999999999999999999 999876665544 3333 22 2332211111222 3444 7889999999
Q ss_pred cCCchHHHHHHHHH
Q 021114 186 ISDAAQADNYEKIF 199 (317)
Q Consensus 186 vP~~~~~~vl~ei~ 199 (317)
+..+.+.-++-.+.
T Consensus 74 t~~d~~N~i~~~la 87 (225)
T COG0569 74 TGNDEVNSVLALLA 87 (225)
T ss_pred eCCCHHHHHHHHHH
Confidence 99988776665544
No 219
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.92 E-value=0.0028 Score=57.88 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=62.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC-cCC----HHhhcCcC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGD----IYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~-~~~----~~e~v~~A 179 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+.-..........-. .+ ..+ +.+.+++|
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs---~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE---KHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc---cccccchhhHHHHHhhhC
Confidence 37999 999999966 6899999999988 888877643221100000000000 00 013 67899999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+||.+++-.... +. .+.+|+|++|+|++..
T Consensus 128 DIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi~ 158 (197)
T cd01079 128 DVVITGVPSPNYK--VP--TELLKDGAICINFASI 158 (197)
T ss_pred CEEEEccCCCCCc--cC--HHHcCCCcEEEEcCCC
Confidence 9999999975531 22 2356899999998753
No 220
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.85 E-value=0.0043 Score=64.07 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=69.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--CCC------------c-CCH
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT------------L-GDI 172 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~------------~-~~~ 172 (317)
..| .++.|||.|.+|...++.++.. |.+|+ ..+.+....+.+++.|.... +.. . .+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~-a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVR-AFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEE-EEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 457 8999999999999999999998 98754 45555666788888886510 000 0 010
Q ss_pred --------HhhcCcCCEEEEccCCch--HHHHH-HHHHhcCCCCcEEEEec
Q 021114 173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 173 --------~e~v~~ADvVILavP~~~--~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+.++++|+||-++.... ...++ ++....||+|.+|+|++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999986432 34554 78889999999998764
No 221
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.85 E-value=0.0027 Score=62.40 Aligned_cols=164 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHh-hhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.+|+| ++|.|+|. |.||..+++.|.. . |. ++++..|...+..+.+.+.+.. ...++++++.++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47899 99999998 8999999999974 3 43 5666666533333334333211 134788999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEE----eccCCCC----------hhhHHH
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIA----VCPKGMG----------PSVRRL 247 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv-~l~~~~~~~~~l~~~i~vV~----vhPn~pg----------~~~r~l 247 (317)
+.++...... ++.. ..++++.+++|.+=- .+.. . .. .+++.++. .+|-... ...|..
T Consensus 220 v~~ts~~~~~-~I~~--~~l~~~~~viDiAvPRDVd~--~--v~-~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~ 291 (340)
T PRK14982 220 VWVASMPKGV-EIDP--ETLKKPCLMIDGGYPKNLDT--K--VQ-GPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQM 291 (340)
T ss_pred EECCcCCcCC-cCCH--HHhCCCeEEEEecCCCCCCc--c--cC-CCCEEEEeCCccccCCCcCccHHHHHhccchhhHH
Confidence 9888653321 1211 234788888887621 1111 0 01 13444432 2221111 111111
Q ss_pred Hhhcc---cccCCCceEEEEeccC-CCHHHHHHHHHHHHHcCCCc
Q 021114 248 YVQGK---EINGAGINSSFAVHQD-VDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 248 f~~G~---e~~g~G~~~iitp~~d-~~~ea~e~a~~l~~alG~~~ 288 (317)
|..-- ---.+|..--|+-..+ .+-+.++.+.+|...-|++.
T Consensus 292 ~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~kHGf~~ 336 (340)
T PRK14982 292 FACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVKHGFSP 336 (340)
T ss_pred HHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHHcCCcc
Confidence 11100 0001333333455555 67888899999999998764
No 222
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0037 Score=60.17 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ .+|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999954 7899999999988 8877655422 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++=
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVGi 228 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVGI 228 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEccC
Confidence 998653 332 345789999999863
No 223
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.84 E-value=0.0022 Score=63.73 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC-----CceecCCCcCCHHhhcCcCCEEE
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+-++++|||.|.|+..+++.+..-.. ++ +|.++.|..++..+.+.+. |+.. -..+.+.+|++++||+|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~----~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~-v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP----GIDTIKIKGRGQKSLDSFATWVAETYPQITN-VEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC----CccEEEEECCCHHHHHHHHHHHHHhcCCCce-EEEeCCHHHHHcCCCEEE
Confidence 33799999999999999999877410 24 5777777654433322221 3210 012568999999999999
Q ss_pred EccCCchH----HHHHHHHHhcCCCCcEEEEecC
Q 021114 184 LLISDAAQ----ADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 184 LavP~~~~----~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.+|+.... ..+++ ...+|||+.|+..+.
T Consensus 229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 99974331 13443 234678887764433
No 224
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0037 Score=60.38 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999955 6899999999988 8887665322 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvGi 231 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVGI 231 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998543 233 245789999999874
No 225
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.82 E-value=0.0052 Score=52.67 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=43.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||. |++|.++|..|... +. ++.+.++........+.+ .+... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 68999999 99999999999987 54 565555543222222222 11110 012255678899999
Q ss_pred EEEcc
Q 021114 182 VLLLI 186 (317)
Q Consensus 182 VILav 186 (317)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99987
No 226
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.0056 Score=61.26 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc---------------cHHHHHHCCcee-cCCCcCCHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---------------SFAEARAAGFTE-ENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~---------------s~~~A~~~G~~~-~~~~~~~~~e~ 175 (317)
|||.|||.|-.|...+..|.+. |++|+.. |.++. -++...+.+... +-...+|.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a 73 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA 73 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH
Confidence 7899999999999999999999 9987544 43321 122222211110 00014688999
Q ss_pred cCcCCEEEEccCCchH---------H-HHHHHHHhcCCCCcEEEEec
Q 021114 176 ISGSDLVLLLISDAAQ---------A-DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 176 v~~ADvVILavP~~~~---------~-~vl~ei~~~lk~gaiVi~~~ 212 (317)
++++|++++++|.... . .+.+++.++++..++|+.=+
T Consensus 74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 9999999999874321 1 24567889987766665433
No 227
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.81 E-value=0.0013 Score=57.54 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=64.3
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC------------------
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------ 166 (317)
+..+.. .+|.|+|.|+.|..-++.++.. |.++++.+.. ....+.....+...-.
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 455666 8999999999999999999998 9987766554 3333444444432100
Q ss_pred ----CCcCCHHhhcCcCCEEEEc--cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 021114 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 167 ----~~~~~~~e~v~~ADvVILa--vP~~~~~~vl~-ei~~~lk~gaiVi~~~ 212 (317)
.....+.+.++.+|+||.+ .|......++. +....||++.+|+|++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0011355678999999963 45556667664 7888899999999874
No 228
>PRK11579 putative oxidoreductase; Provisional
Probab=96.80 E-value=0.0064 Score=58.87 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=51.7
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.||.. .+..++.. .+++++...+.+.+. .+.+. +.. .+.+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666553 156665445544322 12222 222 2568999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (346)
T PRK11579 74 NDTHFPLAKAALE 86 (346)
T ss_pred cHHHHHHHHHHHH
Confidence 9988876665443
No 229
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.79 E-value=0.0044 Score=59.54 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8887765422 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986443 32 34578999999986
No 230
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.78 E-value=0.0045 Score=59.33 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8887665432 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9986543 32 23478999999985
No 231
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.77 E-value=0.0084 Score=48.51 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
-+|+| +++.|||.|.+|..=++.|.+. |.+|++..... ...+..+... ....++.+.++|+|+++
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEec
Confidence 46889 9999999999999999999999 98877665442 1111222221 12445678999999999
Q ss_pred cCCchHHHHHHH
Q 021114 186 ISDAAQADNYEK 197 (317)
Q Consensus 186 vP~~~~~~vl~e 197 (317)
+.+....+.+.+
T Consensus 68 t~d~~~n~~i~~ 79 (103)
T PF13241_consen 68 TDDPELNEAIYA 79 (103)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 998776654443
No 232
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.77 E-value=0.0041 Score=59.60 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|.| +++.|||-++ .|..|++-|... +..|.+.... ..++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 47899 9999999886 699999999998 8888765433 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++--... +. .+.+|+|++|+|++--
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVGin 230 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecCCc
Confidence 9875443 22 4567999999998743
No 233
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.0046 Score=59.39 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999965 6899999999988 8887765332 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++-
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEeec
Confidence 9986543 32 235789999999874
No 234
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.73 E-value=0.0056 Score=53.55 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|...++.|.+. |.+|++.... . .+...+.+ +......+ . ++-+.++|+|+
T Consensus 8 ~l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~-~~~l~~l~~i~~~~~~~-~-~~dl~~a~lVi 75 (157)
T PRK06719 8 MFNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--I-CKEMKELPYITWKQKTF-S-NDDIKDAHLIY 75 (157)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--c-CHHHHhccCcEEEeccc-C-hhcCCCceEEE
Confidence 478999 9999999999999999999999 9987665322 1 12222222 21111111 1 22378899999
Q ss_pred EccCCchHHHHHHHHHh
Q 021114 184 LLISDAAQADNYEKIFS 200 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~ 200 (317)
.++.+.+....+.+...
T Consensus 76 aaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 76 AATNQHAVNMMVKQAAH 92 (157)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 99999887666655443
No 235
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0053 Score=59.02 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999966 6899999999988 8887665322 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++-
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvGi 230 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVGM 230 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEccC
Confidence 9986543 32 245789999999863
No 236
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0052 Score=59.08 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||- ...|..+|.-|... |..|++...+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46899 99999995 57899999999988 8887765321 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvGi 231 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVGV 231 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEeec
Confidence 997544 333 234689999999863
No 237
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.68 E-value=0.0054 Score=59.37 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999966 6899999999988 8888765322 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-. .++. .+++|+|++|+|++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 2333 24578999999986
No 238
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.67 E-value=0.0052 Score=56.64 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceecCCC---cCCH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEENGT---LGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~~~---~~~~ 172 (317)
.+|+| ++|+|.|+|++|..+|+.|.+. |..++...+.+. +..+...+.+-.. ... ..+.
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~-~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA-RVKVQDYFPG 90 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc-ccCcccccCc
Confidence 57899 9999999999999999999998 987665555554 4444444433221 000 1111
Q ss_pred Hhhc-CcCCEEEEccCCchHH
Q 021114 173 YETI-SGSDLVLLLISDAAQA 192 (317)
Q Consensus 173 ~e~v-~~ADvVILavP~~~~~ 192 (317)
++++ .+||+++-|.+.+.+.
T Consensus 91 ~~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 91 EAILGLDVDIFAPCALGNVID 111 (217)
T ss_pred ccceeccccEEeeccccCccC
Confidence 2222 3799999998876543
No 239
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.66 E-value=0.006 Score=58.73 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=58.9
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999965 6899999999988 8887665432 23678899999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.-.. ++. .+++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98543 332 24578999999976
No 240
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.65 E-value=0.0043 Score=59.07 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=53.9
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~v~~ADvV 182 (317)
.++| +++.|||.|-+|.+++..|.+. |. ++++.+|+.++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999998 87 5778888755544444433211000001 1234567889999
Q ss_pred EEccCCch
Q 021114 183 LLLISDAA 190 (317)
Q Consensus 183 ILavP~~~ 190 (317)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999764
No 241
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0064 Score=58.40 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++.... ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 37899 999999955 6899999999988 8887665432 1367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9986543 32 24578999999986
No 242
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.64 E-value=0.012 Score=57.19 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=43.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETIS 177 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~---~G--~~~~~~~~~~~~e~v~ 177 (317)
++. +||+|||.|.||..+|..+... |+ ++++.+...+.....+. . .+ ... ....+. +.++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I--~~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV--IGTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEE--EECCCH-HHhC
Confidence 344 8999999999999999998877 75 65554443321111111 1 11 111 012455 5789
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
+||+||++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
No 243
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.64 E-value=0.0054 Score=60.71 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999955 6899999999988 8877665322 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9986443 22 24578999999976
No 244
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.61 E-value=0.0086 Score=57.15 Aligned_cols=64 Identities=30% Similarity=0.281 Sum_probs=39.8
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH---HC----Cc--eecCCCcCCHHhhcCcCCEEE
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----GF--TEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~----G~--~~~~~~~~~~~e~v~~ADvVI 183 (317)
|+|||.|.||..+|..+... |+ +|++.+...+.....+. .. +. .. ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999998877 65 77666554322111111 11 10 10 012344 5689999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
No 245
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.61 E-value=0.0065 Score=58.38 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHh--hhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~--~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.+|+| |++.|||- ...|..++.-|.. . +..|.+...+ ..++++.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 99999995 5789999999987 5 6677655322 23678899999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|.++.-.. ++. .+++|+|++|+|++-
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvGi 233 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVGV 233 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEccc
Confidence 99998654 233 245789999999863
No 246
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.60 E-value=0.015 Score=48.37 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=56.9
Q ss_pred CEEEEEe----ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG----~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+|+||| -+..|.-+.++|++. |++|+-.+.+.. .. .|... +.+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~-~i-----~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGG-EI-----LGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCS-EE-----TTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCce-EE-----CcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788999999999998 988754443322 11 35442 6688884489999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 34455555553
No 247
>PRK04148 hypothetical protein; Provisional
Probab=96.60 E-value=0.025 Score=48.77 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=71.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcCcCCEEEEcc
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~~ADvVILav 186 (317)
.++ ++|.+||+| -|.++|+.|.+. |++| ++.|.++...+.+++.+.... ++-.....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~V-iaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDV-IVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEE-EEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 367 899999999 899999999998 9987 466666666777777764221 233344557889999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+.....-+-++....+-..++.-.+|
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 998887777777777765555553333
No 248
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.60 E-value=0.0064 Score=59.86 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|.+...+ ..++++.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 6899999999988 8877655322 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++=
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVGi 287 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVGT 287 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEccc
Confidence 9986543 22 245789999999863
No 249
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.58 E-value=0.0074 Score=57.95 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 6899999999988 8887655432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986443 32 23578999999976
No 250
>PRK10206 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.009 Score=58.21 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=52.2
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.++.- .+..+....+ +.+++...+++.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~----~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKD----SWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCC----CEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 58999999998753 3454433200 4566544554433334444554321 2568999995 67999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 75 ~~H~~~~~~al~ 86 (344)
T PRK10206 75 DSHFEYAKRALE 86 (344)
T ss_pred hHHHHHHHHHHH
Confidence 998887665443
No 251
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.56 E-value=0.0034 Score=57.14 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=51.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~~ 189 (317)
++|+|||+|.+|..+++.+... + .|++++...+.+...... .-.|+.. ....++.+++++ .|.|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 1 277766555543321110 0123321 113467777754 99999999999
Q ss_pred hHHHHHHHHH
Q 021114 190 AQADNYEKIF 199 (317)
Q Consensus 190 ~~~~vl~ei~ 199 (317)
...++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8877666544
No 252
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.55 E-value=0.0078 Score=58.12 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999965 6899999999988 8887655432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986543 22 23568999999975
No 253
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.52 E-value=0.012 Score=61.66 Aligned_cols=77 Identities=12% Similarity=0.205 Sum_probs=56.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP 187 (317)
.+|.|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...-.+..++.+- -+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 9887554 455666778888885432222333332 2679999999999
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
+......+
T Consensus 474 d~~~n~~i 481 (601)
T PRK03659 474 EPEDTMKI 481 (601)
T ss_pred CHHHHHHH
Confidence 98766433
No 254
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.51 E-value=0.013 Score=60.55 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADv 181 (317)
.++++ .|-|+|+|.+|..+++.|++. |+++++.+ ++++..+.+++.|+..-.+...+.+- -++++|.
T Consensus 414 ~~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 414 VDICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred cccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 34444 699999999999999999999 98876554 45556777777775432222334321 2579999
Q ss_pred EEEccCCchHHH
Q 021114 182 VLLLISDAAQAD 193 (317)
Q Consensus 182 VILavP~~~~~~ 193 (317)
++++++++....
T Consensus 485 viv~~~~~~~~~ 496 (558)
T PRK10669 485 LLLTIPNGYEAG 496 (558)
T ss_pred EEEEcCChHHHH
Confidence 999999876543
No 255
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.50 E-value=0.0094 Score=57.27 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. +..|++...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999965 6899999999888 8877665322 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGk~~---~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKAE---LVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEee
Confidence 998533 333 24578999999986
No 256
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.48 E-value=0.011 Score=53.67 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=59.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC--CcccHH------------------HHH-H-CC
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GSRSFA------------------EAR-A-AG 161 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~--~~~s~~------------------~A~-~-~G 161 (317)
...|+. ++|+|||+|-||..+|..|... |+ ++++.++. ....+. ... + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 466777 9999999999999999999998 87 45555433 010000 000 0 00
Q ss_pred -ceec----CCCcCCHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEEEecCc
Q 021114 162 -FTEE----NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 162 -~~~~----~~~~~~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi~~~Gv 214 (317)
...+ .-+..+..+.++++|+||-++ ++...+ ++++....++...++. .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 1100 000123456788999999994 554443 4457777776544444 5554
No 257
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.48 E-value=0.018 Score=55.43 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=66.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILav 186 (317)
.+|.|.| .|.+|..+.++|++. |+++++...+. ... -.|+.. +.+++|+-+. .|+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~~-----v~G~~~----y~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGTT-----VLGLPV----FNTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCCe-----EeCeec----cCCHHHHhhccCCCEEEEEc
Confidence 6789999 488999999999998 87644444443 211 146653 6688888776 89999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~ 217 (317)
|.....+.+++... ..-...+++++||.+.
T Consensus 74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 74 PPPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 99999998887665 2335578899999653
No 258
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.48 E-value=0.01 Score=59.16 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=43.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|.|||+|.+|.++|+.|++. |++|+..+++ ...... .+... +......+...+++|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKS-LEALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCC-ccccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCC
Confidence 8899999999999999999999 9887655543 222211 11110 0001233344578999999876543
No 259
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.44 E-value=0.016 Score=56.93 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhcCc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG 178 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---~~~~~~e~v~~ 178 (317)
|||+|+|.||..+++.+.+. .+++++...+.+.+.. ..|...|+... +. ...++++++.+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 1577655555433221 23333332110 00 03468899999
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+|+|+.|+|......-. +....++++++++
T Consensus 76 vDiVve~Tp~~~~~~na-~~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK-PLYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhH-HHHHhCCcCEEEE
Confidence 99999999987664433 3333456666554
No 260
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.40 E-value=0.015 Score=56.29 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=44.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--------G~~~~~~~~~~~~e~v~~ 178 (317)
+| +||+|||.|.+|.++|..|... |. ++.+.+...+.....+.+. .... ...+ .+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i---~~~~-~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI---YAGD-YSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE---EeCC-HHHhCC
Confidence 46 8999999999999999999988 76 5555554333222222211 1111 1223 456899
Q ss_pred CCEEEEccC
Q 021114 179 SDLVLLLIS 187 (317)
Q Consensus 179 ADvVILavP 187 (317)
||+||++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999653
No 261
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.33 E-value=0.03 Score=51.02 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=54.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
-+|+| +++.|||.|.+|..-++.|.+. |.+|++......+.++...+.| +....+.. + .+.+.++|+||.
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence 56899 9999999999999999999999 9887766544333333333343 32211111 2 345789999999
Q ss_pred ccCCchHHH
Q 021114 185 LISDAAQAD 193 (317)
Q Consensus 185 avP~~~~~~ 193 (317)
++.+.....
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 998875544
No 262
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.32 E-value=0.0091 Score=47.70 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~~ 189 (317)
.++.|+|.|++|.+++..+.+. . |+.+....+.+.+... -.-.|+.. ..+++++.+. .|+-+|++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999998665554 2 5544334333322111 01124543 3466666665 99999999998
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
...++..++.+
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 263
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.29 E-value=0.012 Score=56.89 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999965 68999999987621000 5666554322 1267789999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-. .++. .+++|+|++|+|++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99654 3343 12349999999986
No 264
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.26 E-value=0.04 Score=47.43 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=48.3
Q ss_pred EEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEccCCc
Q 021114 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISDA 189 (317)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILavP~~ 189 (317)
|.|+| .|.+|..+++.|.+. |++|+...|+.++.. . ..++..-.+...+ +.++++++|.|+.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~-~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAE-D--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHH-H--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhcc-c--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 67999 599999999999999 999988887755322 2 3443221222334 456788999999999853
No 265
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.26 E-value=0.0098 Score=57.10 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=65.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~v~~AD 180 (317)
.+.+| +++.|+|.|=.+.+++..|.+. |. ++++.+|+.++..+.+...+ .... ....++ +...++|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~-~~~~~~-~~~~~~d 192 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEA-AALADL-EGLEEAD 192 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccc-cccccc-ccccccC
Confidence 56678 9999999999999999999999 95 68889998766555555444 1100 001122 2222699
Q ss_pred EEEEccCCchHHH----HHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~----vl~ei~~~lk~gaiVi~~ 211 (317)
+||-+||...... .+. ...++++.++.|+
T Consensus 193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 193 LLINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 9999999876542 222 4556777777754
No 266
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.014 Score=56.27 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
.+++| |++.|||-+ ..|..++.-|.+. | ..|++...+ ..++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46899 999999965 6899999999876 4 455544322 236788899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+||.++.-... +. .+.+|+|++|+|++-
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvGi 234 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVGT 234 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEecC
Confidence 99999986543 32 245789999999863
No 267
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.0094 Score=57.36 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHh----hhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~----~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
.+++| |++.|||-+ ..|..++.-|.+ . +..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47899 999999965 689999999987 5 6666654422 126788999999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||.++.-.. ++. .+++|+|++|+|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996533 333 13458999999886
No 268
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.20 E-value=0.045 Score=54.37 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=59.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhcCcCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----e~v~~ADv 181 (317)
+.. ++|.|+|+|.+|..+++.|.+. |+++++.+.. ++..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 445 8999999999999999999998 9987665544 4444444443 3221012222332 23578999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|++++++....-....+...+.+..++.-+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 999998765433333444445455555433
No 269
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.20 E-value=0.025 Score=59.70 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=56.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----e~v~~ADvVILavP 187 (317)
++|-|+|+|.+|+.+++.|++. |+++++- +.+++..+.+++.|+..-.+..++.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6799999999999999999999 9886544 55566677788888643222233433 23568999999999
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
+.+....+
T Consensus 474 d~~~n~~i 481 (621)
T PRK03562 474 DPQTSLQL 481 (621)
T ss_pred CHHHHHHH
Confidence 87765433
No 270
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.19 E-value=0.035 Score=51.91 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=41.8
Q ss_pred EEEEec-cchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhcCcCC
Q 021114 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~~~~~~~e~v~~AD 180 (317)
|+|||. |.+|..+|..|... | .++.+.+...++....+.+ . .... ...+|..+.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666555433221111111 1 1111 01346678999999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
No 271
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.09 E-value=0.034 Score=56.31 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|+|||. |++|..+.++|++. |+ +|+ ...+... .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999998 77 453 3333221 1245553 56888887888999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+|+....+++++... ..-..++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999988765 34456788888874
No 272
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.98 E-value=0.017 Score=64.23 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhc---------CCceEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~e-- 174 (317)
+.+++|+|||.|.||...+..|.+. .+.. .+..|.+++...++..+.+... ++ ..-| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3348999999999999999999764 1000 0112555554432222223222 42 1101 335444
Q ss_pred -hcCcCCEEEEccCCchHHHHHH
Q 021114 175 -TISGSDLVLLLISDAAQADNYE 196 (317)
Q Consensus 175 -~v~~ADvVILavP~~~~~~vl~ 196 (317)
+++++|+||.++|..-+..+..
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAk 666 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAK 666 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHH
Confidence 4478999999999987766654
No 273
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.97 E-value=0.043 Score=49.64 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------cccHH---HHHHC-
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~~- 160 (317)
..-|+. ++|.|||+|-+|..+|++|... |. ++++.++.. .+... ...+.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 356778 9999999999999999999998 86 455544331 00000 11110
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 161 -G~~~~--~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
.+..+ +... .+.++.++++|+||.++-.......+++...
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~ 133 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV 133 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 11100 0111 1345678999999999866555556666543
No 274
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.96 E-value=0.012 Score=59.09 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.1
Q ss_pred CEEEEEeccchHHHHHH--HHHhhhhhhcCCceEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|++|.+.+. .+....+ -.|.+|++.++..+ ..+... ..+....-...+|.++++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 3431100 11667766655432 222111 11111000124588899999999
Q ss_pred EEEccCC
Q 021114 182 VLLLISD 188 (317)
Q Consensus 182 VILavP~ 188 (317)
||.+++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999995
No 275
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.93 E-value=0.016 Score=53.71 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC----------CcccHHH-HHHCCceec--CCCcCCH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSFAE-ARAAGFTEE--NGTLGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----------~~~s~~~-A~~~G~~~~--~~~~~~~ 172 (317)
.+++| ++|+|.|+|++|..+|+.|.+. |.+|+...|. +...+.. ..+.|-... .....+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 67889 9999999999999999999998 9987633333 2222222 223332110 0000122
Q ss_pred Hhhc-CcCCEEEEccCCchHH
Q 021114 173 YETI-SGSDLVLLLISDAAQA 192 (317)
Q Consensus 173 ~e~v-~~ADvVILavP~~~~~ 192 (317)
++++ .+||+++-|.+.+.+.
T Consensus 100 ~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 100 EELLELDCDILIPAALENQIT 120 (227)
T ss_pred ccceeecccEEEecCccCccC
Confidence 2222 3789999988776654
No 276
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.91 E-value=0.039 Score=55.58 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccccCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+...++ ++|.|||+|..|.+ +|+.|++. |++|.+.+.+..+..+...+.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 345677 89999999999999 89999999 99987665443333333445576531 122345667899998
Q ss_pred Ec
Q 021114 184 LL 185 (317)
Q Consensus 184 La 185 (317)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 85
No 277
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.85 E-value=0.03 Score=53.96 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+.. +..+..|++...+ ..++++.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 68999999997650 0002355543221 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvGi 230 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVGT 230 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998643 232 245789999999873
No 278
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.82 E-value=0.03 Score=54.92 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=53.9
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCC-c-eEEEEecCCcccHHHHHH-C--CceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
|.|||.|.+|..+++.|.+. + . +++++.|+.++..+.+.+ . .+....-...+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 4 3 677777765433333321 1 22110011223 56789999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+.....+++... +.|.-.+|.+.
T Consensus 75 ~gp~~~~~v~~~~i---~~g~~yvD~~~ 99 (386)
T PF03435_consen 75 AGPFFGEPVARACI---EAGVHYVDTSY 99 (386)
T ss_dssp SSGGGHHHHHHHHH---HHT-EEEESS-
T ss_pred CccchhHHHHHHHH---HhCCCeeccch
Confidence 99985555555332 23556667544
No 279
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.79 E-value=0.027 Score=55.39 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|.| +++.|||.|.||.-.+++|++. |. ++++.+|.... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 56889 9999999999999999999999 86 57888887421 111000 0011134578999998
Q ss_pred cc
Q 021114 185 LI 186 (317)
Q Consensus 185 av 186 (317)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 280
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.77 E-value=0.029 Score=54.27 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=56.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-+ .+|..+|.-|.+. .+..+..|.+...+ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999954 7899999999865 00002456554321 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+.+|+|++|+|++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9865432 32 23578999999976
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.77 E-value=0.039 Score=54.31 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCH-HhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~-~e~v~~ADvVILav 186 (317)
+| ++|+|+|.|-+|.--.|.++.. |.+|+... ++++..+.|++.|...- +....+. +++-+.+|+|+.++
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~-~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAIT-RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEe-CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 46 8999999998888888888888 98876544 44556778898886421 1111122 22333399999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+ ... +++..+.|+++-.++.+
T Consensus 238 ~-~~~---~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 G-PAT---LEPSLKALRRGGTLVLV 258 (339)
T ss_pred C-hhh---HHHHHHHHhcCCEEEEE
Confidence 9 333 34444455665555433
No 282
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.76 E-value=0.036 Score=53.99 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=40.6
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~-------G~~~~~~~~~~~ 172 (317)
+||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ . .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999999876 44 45444442111 1111111 1 1111 1345
Q ss_pred HhhcCcCCEEEEcc
Q 021114 173 YETISGSDLVLLLI 186 (317)
Q Consensus 173 ~e~v~~ADvVILav 186 (317)
.+.+++||+||++.
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 67889999999975
No 283
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.72 E-value=0.06 Score=48.53 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=50.3
Q ss_pred EEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 021114 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (317)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILavP~ 188 (317)
|.|+|. |.+|+++++.|.+. +++|.+..|+..+ ..+...+.|+..-..... ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689994 99999999999998 9998888877532 234445567542112222 455689999999999994
No 284
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.66 E-value=0.028 Score=53.65 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~ 173 (317)
..++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.+
T Consensus 122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK 194 (289)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence 35778 9999999999999999999988 985 87887764 2222222221 1 000000011 233
Q ss_pred hhcCcCCEEEEccCCch
Q 021114 174 ETISGSDLVLLLISDAA 190 (317)
Q Consensus 174 e~v~~ADvVILavP~~~ 190 (317)
+.++++|+||.+||...
T Consensus 195 ~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 195 AEIASSDILVNATLVGM 211 (289)
T ss_pred hhhccCCEEEEeCCCCC
Confidence 45678899999999764
No 285
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.033 Score=56.21 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
..+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+...+.|+.... -....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCCE
Confidence 55668 9999999999999999999999 99887666443211 1234556764311 1123455688999
Q ss_pred EEEc
Q 021114 182 VLLL 185 (317)
Q Consensus 182 VILa 185 (317)
||..
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9986
No 286
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.19 Score=49.51 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=84.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHH-HHHCCceecCCCcC--CHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAE-ARAAGFTEENGTLG--DIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~-A~~~G~~~~~~~~~--~~~e~v~~ADvVILav 186 (317)
++|||+| .|..|+.+.+.|.+. .+-+. +.+.....+. =+. ..-.|... .... ......+++|+++.+.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSa-G~~~~~f~~~~~--~v~~~~~~~~~~~~~Divf~~a 74 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSA-GKKYIEFGGKSI--GVPEDAADEFVFSDVDIVFFAA 74 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEeccccc-CCccccccCccc--cCccccccccccccCCEEEEeC
Confidence 7899998 799999999999885 11222 2222222111 011 11111110 0011 1123456899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+.....++.++.. +.|++|+|.++.- +. -+++..| -|--.... +...-+ .| .||+..
T Consensus 75 g~~~s~~~~p~~~---~~G~~VIdnsSa~----Rm-----~~DVPLV--VPeVN~~~---l~~~~~----rg--~Iianp 131 (334)
T COG0136 75 GGSVSKEVEPKAA---EAGCVVIDNSSAF----RM-----DPDVPLV--VPEVNPEH---LIDYQK----RG--FIIANP 131 (334)
T ss_pred chHHHHHHHHHHH---HcCCEEEeCCccc----cc-----CCCCCEe--cCCcCHHH---HHhhhh----CC--CEEECC
Confidence 9877766776655 4689999887741 11 1233333 33111111 111110 22 455555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchh
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQ 296 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~ 296 (317)
...+-..+-..+-|.+..|-.++..+|++.
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 555555556667777878888888888753
No 287
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.62 E-value=0.03 Score=53.70 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=51.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCc---ccHHHHHHCCcee-cCCCcCC------HHh
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTE-ENGTLGD------IYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~-~~~~~~~------~~e 174 (317)
.+++| +++.|||.|-.+.+++..|... |. ++.+.+|..+ +..+.+.+.+... ......+ +++
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999999887 86 6778887632 3333333221100 0000112 234
Q ss_pred hcCcCCEEEEccCCchH
Q 021114 175 TISGSDLVLLLISDAAQ 191 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~ 191 (317)
.+.++|+||.++|....
T Consensus 193 ~~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 193 ALASADILTNGTKVGMK 209 (288)
T ss_pred hcccCCEEEECCCCCCC
Confidence 56789999999998643
No 288
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.56 E-value=0.075 Score=51.78 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
.||+||| .|-.|.-+.+.|... ..+++. ...... . +. ..+.+++++++|++|+++|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~~-~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPDR-R--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEeccc-c--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 799999999999876 123432 222211 1 22 1255677789999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCc
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
..++.+++. +.|+.|+|.++.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad 82 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA 82 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH
Confidence 777776653 368889988763
No 289
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.061 Score=53.62 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++++ +++.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|.... .....++...+.|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELV--LGEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEE--eCCcchhHhhcCCEE
Confidence 4678 9999999999999999999999 999877766532222 22223454321 012233556789999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|.++-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 997643
No 290
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.45 E-value=0.064 Score=43.59 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HH
Q 021114 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (317)
Q Consensus 121 ~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl 195 (317)
+-+-.+++.|++. |.+|.+.+.. -... .... .++.. ..+++++++.+|+||++++-....+ -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~-v~~~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPY-VDEE-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TT-SHHH-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCc-cChH-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 5567788888888 9987655433 2222 2222 35553 4588999999999999999888877 45
Q ss_pred HHHHhcCCCCcEEEEecCc
Q 021114 196 EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 196 ~ei~~~lk~gaiVi~~~Gv 214 (317)
+++...|+++.+|+|..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889889999998875
No 291
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.44 E-value=0.049 Score=52.76 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=41.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH----CCceec-CCC-cCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-NGT-LGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-~~~-~~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... |. ++++.+...+.....+.+ ..+... .-. ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999877 65 455555433222222221 101100 001 245655 89999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 292
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.41 E-value=0.17 Score=48.68 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=63.4
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hcCcCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~e--~v~~ADvVI 183 (317)
.+| .++.|+|.|.+|...++.++.. |.+|++..++ +++..+.+++.|...-+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 368 9999999999999999999998 9887665553 3455677888887531111111111 224579999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
-++.... .+++....++++..++.++
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEEe
Confidence 9987432 4556667777777666443
No 293
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.38 E-value=0.52 Score=47.59 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~~~ 169 (317)
|.+|-|+|.|..+--+|..+++. +. ++=+..|.+.++. -.+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 46899999999999999999986 43 4544555543332 222222 21110 1124
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHH----HhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEE-------
Q 021114 170 GDIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIA------- 234 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~~vl~ei----~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~------- 234 (317)
.+.+++..+=|.+|||||-++..++++++ +..+| ++|.++..+. +..+-. ....++.||.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfGS~~lv~~~l~---~~~~~~EVISFStY~gd 149 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFGSHLLVKGFLN---DLGPDAEVISFSTYYGD 149 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccchHHHHHHHHH---hcCCCceEEEeeccccc
Confidence 56777888889999999999999999854 34443 3555665441 222211 2233677775
Q ss_pred ---eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE-EecCchhhhh
Q 021114 235 ---VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYK 299 (317)
Q Consensus 235 ---vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~-~~tT~~~e~~ 299 (317)
.+...|-...-...++ ..++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus 150 Tr~~d~~~~~~vlt~~vK~---------kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 150 TRWSDGEQPNRVLTTAVKK---------KIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred ceeccCCCcceehhhhhhc---------eEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 4444444444334432 3434444 4556788888999999997654 5555666655
No 294
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.35 E-value=0.085 Score=51.46 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=41.5
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc--ccHHHHHH--CCc-ee-cC-CCcCCHHhhc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA--AGF-TE-EN-GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~--~s~~~A~~--~G~-~~-~~-~~~~~~~e~v 176 (317)
.||+|||. |.+|.++|..|... |+ ++++.+.... .....+.+ ... .. .+ ....+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 4554444321 11222221 111 00 00 0013556789
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+||++.
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999975
No 295
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.35 E-value=0.091 Score=51.22 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=54.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
.+|+||| .|..|..+.+.|.+. . +++. ....++.. . .. +.++..+++|+||+++|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~-~~~s~~~~------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELL-SIPEAKRK------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEE-EEecCCCC------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999998876 3 2332 22221111 0 11 3345667899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
...++..++.+ .|+.|+|.++
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECCh
Confidence 77777776643 5888998876
No 296
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.34 E-value=0.081 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (317)
...|++ ++|.|||+|-+|..+|+.|... |+ ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467788 9999999999999999999998 87 455444421 0000 01111
Q ss_pred --CCceec----CCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhc
Q 021114 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (317)
Q Consensus 160 --~G~~~~----~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~ 201 (317)
.++..+ +.+..+++++++++|+||.++-+.....+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122110 111134677899999999999555444466765543
No 297
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.055 Score=52.40 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+.... .+..|.+...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 6899999998753000 02456553221 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++--.. ++. .+++|+|++|+|++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886543 332 24578999999976
No 298
>PRK05442 malate dehydrogenase; Provisional
Probab=95.29 E-value=0.068 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.0
Q ss_pred CEEEEEec-cchHHHHHHHHHhh
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
.||+|||. |.+|.++|..|...
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh
Confidence 79999998 99999999988765
No 299
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.046 Score=55.50 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=48.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.+ ++|.|+|+|-.|.++|+.|++. |.+|.+.+++.....+...+.|+.... -....+.+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45677 9999999999999999999999 998766554432222223445765310 11234556789999885
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.073 Score=53.74 Aligned_cols=70 Identities=27% Similarity=0.188 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.++| ++|.|||.|.+|.++|..|++. |++|++.++.+.. ..+..++.|+... ..+..+...++|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 4678 9999999999999999999999 9998777654321 1233455676531 11111244579999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9986
No 301
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.26 E-value=0.092 Score=50.36 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--Ccee-cC--CC-cCCHHhhcCcCCEEEEc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-EN--GT-LGDIYETISGSDLVLLL 185 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~--~~-~~~~~e~v~~ADvVILa 185 (317)
|+|||.|.+|.++|..|... |. ++++.+...+.....+.+. .... .. .. ..+ .+.+++||+||++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 68999999999999999887 74 5555554433222222211 0000 00 00 123 4688999999998
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
...
T Consensus 74 ag~ 76 (300)
T cd00300 74 AGA 76 (300)
T ss_pred CCC
Confidence 753
No 302
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.22 E-value=0.041 Score=53.69 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=45.1
Q ss_pred ccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhh
Q 021114 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET 175 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~e~ 175 (317)
+..++. +||+|||. |.+|.++|..|... +. ++++.+.. .....+.+ . .....+.+. .+..+.
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence 356777 99999999 99999999999865 43 55555542 11111111 0 111101111 223678
Q ss_pred cCcCCEEEEccC
Q 021114 176 ISGSDLVLLLIS 187 (317)
Q Consensus 176 v~~ADvVILavP 187 (317)
++++|+||++.-
T Consensus 74 l~gaDvVVitaG 85 (321)
T PTZ00325 74 LRGADLVLICAG 85 (321)
T ss_pred hCCCCEEEECCC
Confidence 999999998754
No 303
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.22 E-value=0.11 Score=51.22 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=66.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~A--DvVILavP~ 188 (317)
-++||+|+|.|+.-.+++|... .+ +++.|+ ++.++-+.+.+.|.+.++.. -...++.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4799999999999999999775 22 266554 33444445567778888831 23478999999876 999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021114 189 AAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi 209 (317)
.++.++.-.++.+=|+ +++
T Consensus 83 ~qH~evv~l~l~~~K~--VL~ 101 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH--VLC 101 (351)
T ss_pred ccHHHHHHHHHHcCCc--EEe
Confidence 9998877655554333 444
No 304
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.19 E-value=0.081 Score=51.53 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhh-hhhhcCCceEEEEecCCcccHHHHHHCCcee------cC-CCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~~-~~~~~~~e~v~~ADvV 182 (317)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.+ .+ ....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 57999998 99999999999875 0000002356555553211101111111110 00 0024667889999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9864
No 305
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.11 E-value=0.077 Score=51.90 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=53.5
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hh-hhcCCceEEEEecCCc-------ccHH----HHHHCCceec---CCCcCCHH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGS-------RSFA----EARAAGFTEE---NGTLGDIY 173 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~-~~~~G~~Vivg~r~~~-------~s~~----~A~~~G~~~~---~~~~~~~~ 173 (317)
.+|+|||+|.||..+++.|++. +. ..+.+++++...+++. -..+ .+.+.|.... .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998764 11 1122455433333210 0111 1222232110 00123778
Q ss_pred hhc--CcCCEEEEccCCchHH-HH-HHHHHhcCCCCcEEEE
Q 021114 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (317)
Q Consensus 174 e~v--~~ADvVILavP~~~~~-~v-l~ei~~~lk~gaiVi~ 210 (317)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 887 4689999999986542 22 2223344556666554
No 306
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.10 E-value=0.17 Score=44.15 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCCCEEEEEe--ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--c----cH----HHHHHCC--ceecCCCcCCHHh
Q 021114 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--R----SF----AEARAAG--FTEENGTLGDIYE 174 (317)
Q Consensus 109 ~GikkIGIIG--~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~----s~----~~A~~~G--~~~~~~~~~~~~e 174 (317)
+| +||++|| .+++..|++..+... |+++.+....+- + -. +.+.+.| +.. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999999 998665544331 1 12 1223334 232 469999
Q ss_pred hcCcCCEEEEccCC
Q 021114 175 TISGSDLVLLLISD 188 (317)
Q Consensus 175 ~v~~ADvVILavP~ 188 (317)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998876655
No 307
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.09 E-value=0.069 Score=52.05 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=39.8
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCcccHHHHHHCCceec-------CCCcCCHHhhcC
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-------NGTLGDIYETIS 177 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-------~~~~~~~~e~v~ 177 (317)
+|+|||. |.+|.++|..|... ++ ++++.+.........+......+. .....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 43 354554422110011111111100 000124467899
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
+||+||++.-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999753
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.06 E-value=0.19 Score=49.03 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhc--CcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----e~v--~~A 179 (317)
..+ .++.|+|.|.||.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 344 5899999999999999988888 87655666776777888888 44331000001 111 222 359
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|++|-++- ....+++....++++-.+..+
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 334566667777777766544
No 309
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.065 Score=53.88 Aligned_cols=67 Identities=30% Similarity=0.296 Sum_probs=46.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| ++|.|||+|-.|.+.|+.|++. |++|.+.++... ......+.|+... ..+. +-+.++|+||.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~---~~~~-~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPA-SRAKAAAAGITTA---DLRT-ADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChh-hHHHHHhcCcccc---CCCh-hHHcCCCEEEE
Confidence 45788 9999999999999999999999 998765554322 2223345676531 1122 34578999886
No 310
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.11 Score=53.02 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.+++ ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34568 9999999999999999999998 9988775543 3334445566764311 12334567889999986
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 311
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.00 E-value=0.04 Score=50.32 Aligned_cols=80 Identities=9% Similarity=0.219 Sum_probs=53.7
Q ss_pred CEEEEEeccchHHHHHHHH--HhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~L--r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.++.|||.|++|.|++..- .+. |++++-..|.+++..-. .-.++.. ...+++++.++ +.|+.||++|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V--~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPV--YDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeee--echHHHHHHHHhcCccEEEEEcc
Confidence 5799999999999998643 334 78887777776542211 1123332 12456777777 7899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
-....++.+.+..
T Consensus 156 a~~AQ~vad~Lv~ 168 (211)
T COG2344 156 AEHAQEVADRLVK 168 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666665543
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.00 E-value=0.24 Score=47.40 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=62.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC---cCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~---~ADvVI 183 (317)
.+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|...- +....+..+... ..|+|+
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 368 9999999999999999999998 98433444444556778888886421 111112333332 379999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
=++... ..++.....++++..++..+
T Consensus 241 d~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 888753 23445556677777766554
No 313
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.98 E-value=0.12 Score=49.70 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
| ++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|+.. ..+.+++++++|+|++.+|..
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888888999999999 9988764333221 1 2246653 446788999999999999873
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEE
Q 021114 190 AQA----------D-NY-EKIFSCMKPNSILG 209 (317)
Q Consensus 190 ~~~----------~-vl-~ei~~~lk~gaiVi 209 (317)
... + .+ ++.+..|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 210 1 12 36788999998555
No 314
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.96 E-value=0.13 Score=48.40 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=75.6
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEec
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVC 236 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~-~~l~~~i~vV~vh 236 (317)
+.|+.. .+|-.|+++++|+|+.=+|-.. +.++++++.+.+++|++|++++-+....+...- ..-+++.++-..|
T Consensus 124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsyh 199 (343)
T COG4074 124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYH 199 (343)
T ss_pred HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccC
Confidence 467664 4677899999999999998765 567999999999999999988876432221100 0224688999999
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHH
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~a 283 (317)
| +..+++ +| -- +..++..++++++.+-+|-+.
T Consensus 200 p-g~vpem-----kg-------qv--yiaegyaseeavn~lyelg~k 231 (343)
T COG4074 200 P-GTVPEM-----KG-------QV--YIAEGYASEEAVNALYELGEK 231 (343)
T ss_pred C-CCCccc-----cC-------cE--EEecccccHHHHHHHHHHHHH
Confidence 9 555664 23 22 346778889998887776554
No 315
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.95 E-value=0.045 Score=53.65 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=45.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
=+| .+++|+|+|..|.+.+++.|.+ |..-+++.|-+++..+.|++.|+++
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 357 8999999999999999999999 9877889999888899999999985
No 316
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.94 E-value=0.077 Score=52.93 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecC-CCcCCHH-hhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~-~~~~~~~-e~v~~ADvVILav 186 (317)
+||+||| .|..|..+.+.|.+. .++++....+..+ +...... ......+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 7999999 599999999988765 1445544333211 1111110 0000000 0011222 2258899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....++.+. |+.|+.|+|.++.
T Consensus 113 p~~~s~~i~~~----~~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKA----LPKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHH----HhCCCEEEEcCch
Confidence 98755555555 3457889987764
No 317
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.94 E-value=0.14 Score=48.54 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| +++.|+|.|.+|...++.++.. |.++++..+..+..++.+.+..+.+ ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 57 8999999999999999999988 9876555555554455555444331 111122458999998885
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.. .+++.++.++++..++..+
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEEe
Confidence 43 3455566677777666544
No 318
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.88 E-value=0.14 Score=50.38 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=57.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC--
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-- 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~-- 188 (317)
.+|||||+ .+|...+..+++. +.+.+++...+++ ++..+.|.+.|+.. +.+.+|++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999988876 0035654444443 44556777778753 67999999888888888753
Q ss_pred --chHHHHHHHHHhcCCCCcEEE
Q 021114 189 --AAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 189 --~~~~~vl~ei~~~lk~gaiVi 209 (317)
..+.++..+. |+.|+-|+
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 4555655543 34555544
No 319
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.88 E-value=0.096 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
..-|+. ++|.|||+|-+|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 356778 9999999999999999999998
No 320
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.87 E-value=0.098 Score=51.49 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=55.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEE-EEec-CCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLR-KGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vi-vg~r-~~~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++|+||| .|..|..+.+.|.+. ++ ++. +..+ ...+.... .| ...+ ..+. +.+.++|+||
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf 74 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL 74 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence 7899999 799999999999876 55 221 2222 11111111 12 1110 1122 4458999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++|.....++..+.. +.|+.|+|.++.
T Consensus 75 ~a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 75 FSAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred ECCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 9999987777776543 368899988763
No 321
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.84 E-value=0.082 Score=51.50 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce---EEEEecCCcccHHHHHHCCceecCCCcCCHH-hhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~-e~v~~ADvVILav 186 (317)
++|+||| .|..|..+.+.|.+. |+. +....+..+...... -.|... ...+.. +.++++|+||+++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~ 71 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA 71 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence 7999999 899999999999886 653 333332211110000 011110 011211 2347899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|-....++.+++. +.|+.|+|.++
T Consensus 72 g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 72 GGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9887777776654 35788887766
No 322
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.84 E-value=0.13 Score=49.52 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=41.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~~~~~~e~v~~A 179 (317)
|||+|||. |.+|..++..|... |+ ++++.++.. +.....+. ..+....-....+ .+.+++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence 68999997 99999999999987 76 365555532 11111110 1111000000124 4559999
Q ss_pred CEEEEccC
Q 021114 180 DLVLLLIS 187 (317)
Q Consensus 180 DvVILavP 187 (317)
|+||++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99999985
No 323
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.82 E-value=0.085 Score=53.18 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=50.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhh----hhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~----~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILa 185 (317)
.+|||||+|.+|..+++.|.+..+ ..|.++++....+++.. .+....... .....+.++++. +.|+|+.+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~---~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve~ 79 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE---KDRGVDLPG-ILLTTDPEELVNDPDIDIVVEL 79 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh---hccCCCCcc-cceeCCHHHHhhCCCCCEEEEC
Confidence 579999999999999998866411 12224454333333221 111111100 011457888885 57999999
Q ss_pred cCCch-HHHHHHHHHhcCCCCcEEEE
Q 021114 186 ISDAA-QADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 186 vP~~~-~~~vl~ei~~~lk~gaiVi~ 210 (317)
++... ..+.+. ..|+.|+-|+.
T Consensus 80 tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 80 MGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCchHHHHHHH---HHHHCCCeEEE
Confidence 87643 223332 33455665553
No 324
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.82 E-value=0.18 Score=46.41 Aligned_cols=82 Identities=16% Similarity=0.033 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-.|+| +++.|||.|..|..=++.|.+. |-+|++....-.+... ...+.++..-+ ...+.++.. .+++||
T Consensus 7 ~~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvi 77 (210)
T COG1648 7 FLDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVI 77 (210)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEE
Confidence 467899 9999999999999999999988 9887766555423333 33333322101 123444444 499999
Q ss_pred EccCCchHHHHH
Q 021114 184 LLISDAAQADNY 195 (317)
Q Consensus 184 LavP~~~~~~vl 195 (317)
.+|.+....+-+
T Consensus 78 aAt~d~~ln~~i 89 (210)
T COG1648 78 AATDDEELNERI 89 (210)
T ss_pred EeCCCHHHHHHH
Confidence 999998876533
No 325
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.81 E-value=0.086 Score=51.75 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=52.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce--EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~--Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+||| .|..|..+.+.|.+. ++. .+....+.+..-+.-.-.| ... ...+.++ ++++|+|++++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~~~l~~---~~~~~~~-~~~vD~vFla~ 74 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAGKNLRV---REVDSFD-FSQVQLAFFAA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCCcceEE---eeCChHH-hcCCCEEEEcC
Confidence 6899999 599999999999975 442 1122222111000000111 110 0113333 48899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....++.++... .|..++|.+|-
T Consensus 75 p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 75 GAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred CHHHHHHHHHHHHH---CCCeEEECchh
Confidence 97655555555543 58889987763
No 326
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.77 E-value=0.15 Score=46.15 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. ++|.|||+|.+|..++++|...
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~ 43 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS 43 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
No 327
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.74 E-value=0.23 Score=46.28 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc------CcCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v------~~ADvV 182 (317)
+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|....- ...+..+.+ ...|+|
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCCEE
Confidence 68 9999999999999999999998 986334445555566778888864200 001111111 246777
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+-++.... .+++....++++..++..+
T Consensus 192 id~~G~~~---~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 192 LEFSGATA---AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EECCCChH---HHHHHHHHhcCCCEEEEec
Confidence 77664322 3344445555655555433
No 328
>PLN02602 lactate dehydrogenase
Probab=94.70 E-value=0.1 Score=51.56 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=40.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CC--ceec-CCCc-CCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEE-NGTL-GDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~-~~~~-~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... +. ++.+.+.........+.+ .. +... .-.. .+.+ .+++||+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEE
Confidence 6999999999999999999877 65 454444432222222211 10 1100 0001 2444 489999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 111 itA 113 (350)
T PLN02602 111 VTA 113 (350)
T ss_pred ECC
Confidence 984
No 329
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.64 E-value=0.12 Score=47.27 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=57.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~v~~ADvVILavP 187 (317)
|||+||| .|..|..+++-+.+. |++|+...|..++... ..+.+.-+.. .....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7899999 799999999999999 9998777776443211 1233111111 2234467889999999864
Q ss_pred Cc----hH--HHHHHHHHhcCCC-Cc-EEEEecCc
Q 021114 188 DA----AQ--ADNYEKIFSCMKP-NS-ILGLSHGF 214 (317)
Q Consensus 188 ~~----~~--~~vl~ei~~~lk~-ga-iVi~~~Gv 214 (317)
.. .. .+..+.+...++. +. -+++++|.
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA 106 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA 106 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 43 21 1223334455544 22 25566665
No 330
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=94.62 E-value=0.025 Score=56.37 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=72.4
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
...-..| .++|+||+|..|.++++..+.+ |+.| +.+|.- .+-.+.+.-.+.+ .++.|+.-++|-+
T Consensus 172 g~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~-ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~ 237 (435)
T KOG0067|consen 172 GLARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVV-IFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCV 237 (435)
T ss_pred ccccccc-cceeeeccccccceehhhhhcc------ccee-eeecchhhhhhhhhccccee------cccchhhhhccce
Confidence 3456677 8999999999999999999999 9865 455542 2233444333343 3688889999999
Q ss_pred EEccCCchHHH-HHHH-HHhcCCCCcEEEE-ecCchh
Q 021114 183 LLLISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFLL 216 (317)
Q Consensus 183 ILavP~~~~~~-vl~e-i~~~lk~gaiVi~-~~Gv~l 216 (317)
.+++....... +++. -...|++|..++. +.|..+
T Consensus 238 S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglv 274 (435)
T KOG0067|consen 238 SLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLV 274 (435)
T ss_pred eeecccCcccccccccccceeecccceEeeecccccC
Confidence 99999998875 6653 4567999998774 456543
No 331
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.17 Score=50.42 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=47.4
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhcCc-CCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~v~~-ADvV 182 (317)
+++| +++.|+|.|.+|.+.|+.|++. |++|++.++.... ..+...+.|+.... -.+..+++.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9998776543221 12333445654210 0233344444 8998
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8854
No 332
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.59 E-value=0.13 Score=50.17 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.5
Q ss_pred EEEEEec-cchHHHHHHHHHhh
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
||+|||. |.+|.++|..|...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC
Confidence 7999999 99999999999875
No 333
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.51 E-value=0.19 Score=45.44 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~ 147 (317)
..-|+. .+|.|||+|.+|..++++|... |.. +.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 466777 9999999999999999999998 774 44443
No 334
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.51 E-value=0.078 Score=44.44 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r 148 (317)
++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7899999999999999999998 87 4555543
No 335
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.46 E-value=0.26 Score=48.71 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccH-HHHH-HCCceecCCCcCCHHhh-cCcCCEEEE
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSF-AEAR-AAGFTEENGTLGDIYET-ISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~-~~A~-~~G~~~~~~~~~~~~e~-v~~ADvVIL 184 (317)
++||+||| .|--|.-+.+.|... ...++.....+. .+.. +... ..|..+......+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 788898888888765 134543333221 1111 0000 11221100011233443 456999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+|...-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999988888877654 4556888776
No 336
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.14 Score=52.18 Aligned_cols=73 Identities=25% Similarity=0.227 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHC--CceecCCCcC-CHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~-~~~e~v~~ADvV 182 (317)
++.+ ++|.|||+|..|.++|+.|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+|
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~v 73 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLV 73 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEE
Confidence 3567 9999999999999999999999 998865554322 122223333 43321 11 234567789999
Q ss_pred EEc--cCCc
Q 021114 183 LLL--ISDA 189 (317)
Q Consensus 183 ILa--vP~~ 189 (317)
|.. +|+.
T Consensus 74 v~sp~I~~~ 82 (498)
T PRK02006 74 ALSPGLSPL 82 (498)
T ss_pred EECCCCCCc
Confidence 996 5653
No 337
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.45 E-value=0.27 Score=47.37 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=67.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~ 188 (317)
.+|.|.| .|.+|..+-.+++.. |.+++++..++. . ...-.|+.. +.+++|+-+. .|++++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~-~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGK-G--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCC-C--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6799999 899999999999998 887666655541 0 111246653 5688887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+.+++.... .-..++++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999988876652 23467889999853
No 338
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.43 E-value=0.11 Score=53.04 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=49.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc---HHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..+.| |+|.|+|+|.-|.+.|+.|++. |.+|++.+++.... .......++....+. ...+...++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 44567 9999999999999999999999 99988877554331 112223454332111 122667889999
Q ss_pred EEc
Q 021114 183 LLL 185 (317)
Q Consensus 183 ILa 185 (317)
|+.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 985
No 339
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.41 E-value=0.18 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. ++|.|||+|-+|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
No 340
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.38 E-value=0.31 Score=50.05 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=67.5
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-----cee------
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------ 164 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------ 164 (317)
..++| ++|+|+|+ .+-...++..|.+. |.+|.+++.. -...+.....+ +..
T Consensus 320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~-v~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
T PLN02353 320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQ-VTEEQIQRDLSMNKFDWDHPRHLQP 391 (473)
T ss_pred cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCC-CChHHHHHHhhcccccccccccccc
Confidence 35889 99999998 55677888888888 9987655433 22111111111 000
Q ss_pred -------cCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCch
Q 021114 165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 165 -------~~~~~~~~~e~v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv~ 215 (317)
......+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 001134667899999999999998877653 557777787666888988763
No 341
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.38 E-value=0.36 Score=40.69 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~ 147 (317)
+|.|||+|-+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 344443
No 342
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.32 E-value=0.074 Score=51.47 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=41.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC----Ccee-c--CCCcCCHHhhcCcCCEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-E--NGTLGDIYETISGSDLVL 183 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~-~--~~~~~~~~e~v~~ADvVI 183 (317)
||+|||.|.+|.++|..|... +. ++++.+.........+.+. -+.. . .....+ .+.+++||+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 699999999999999999877 65 4555554332222222211 1110 0 001223 46789999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9753
No 343
>PRK05086 malate dehydrogenase; Provisional
Probab=94.26 E-value=0.15 Score=49.36 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=41.6
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--C-C--ceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--A-G--FTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~-G--~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.....+.. . + .........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999885421 113455544443 222111111 1 1 110000023556888999999998
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
.-.
T Consensus 77 aG~ 79 (312)
T PRK05086 77 AGV 79 (312)
T ss_pred CCC
Confidence 753
No 344
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.25 E-value=0.36 Score=46.34 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+| .++.|+|.|.+|...++.+++ . | .+|++..+ ++...+.+++.+... ...+..+-. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~-~~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGK-HQEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeC-cHhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 47 899999999999998888775 4 4 35554443 344456666555432 011111211 479999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
........+++.+..++++-.++..
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334566677788887766544
No 345
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.21 E-value=0.17 Score=53.40 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=51.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|+|||.|..|.+.|..|++. |++|++..+... ...+...+.|+...-.+
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999999 999887765532 12344556675321111
Q ss_pred ----cCCHHhhcCcCCEEEEccCC
Q 021114 169 ----LGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 169 ----~~~~~e~v~~ADvVILavP~ 188 (317)
..+++++..+.|.|++++--
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 12455666789999998753
No 346
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.17 E-value=0.21 Score=48.53 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=40.8
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--ccHHHHHHCCce---ecCCC-cCCHHhhcCcCCEEE
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGFT---EENGT-LGDIYETISGSDLVL 183 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~~---~~~~~-~~~~~e~v~~ADvVI 183 (317)
||+|||. |.+|.++|..|... ++ ++++.+.... ..++. ..+.. ....+ ..+..+.+++||+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 6999999 99999999999877 65 4554443321 11111 11111 00000 013468899999999
Q ss_pred EccCC
Q 021114 184 LLISD 188 (317)
Q Consensus 184 LavP~ 188 (317)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 97643
No 347
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.12 E-value=0.84 Score=46.64 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=40.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhh-hhhhcCCc--eEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~~~~~~~e~v~~ADvV 182 (317)
-||+|||. |.+|.++|-.|... +-+.-.++ ++++.+...+.....+.+ .+. ..+-....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 68999999 99999999988653 00000011 344444333322222221 111 00000013456788999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
|+..-
T Consensus 181 VitAG 185 (444)
T PLN00112 181 LLIGA 185 (444)
T ss_pred EECCC
Confidence 99753
No 348
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=94.09 E-value=0.36 Score=47.22 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=68.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILav 186 (317)
.+|-|-| .|..|.-.++.+++. |-+|+-|..+.. .... ..|+.. +.+.+|+.+. +|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6899999 599999999999999 988888877643 2211 125553 6789999887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
|+....+.+.|..+. .-..+|+++.|+..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe 125 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQ 125 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCch
Confidence 999988877765442 12347788899853
No 349
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.06 E-value=0.18 Score=49.20 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=54.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCccc-HHHHHHCCc-----e---ecCCCcC-CHHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRS-FAEARAAGF-----T---EENGTLG-DIYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s-~~~A~~~G~-----~---~~~~~~~-~~~e~v~~A 179 (317)
++|+|+| .|.||..+++.|... . +++....+..... ........+ . ..+-... ..++...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4799999 599999999988775 4 4654443332110 001100110 0 0000010 112345889
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+|++++|.....++.+++.. .|..++|.+|.
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999877776655433 57778877764
No 350
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.05 E-value=0.32 Score=48.74 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=54.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP 187 (317)
..+-|+|+|.+|..+++.|++. |.++++.+.. . .+...+.|+..-.+..++.+. -+++||.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8877665543 1 233333342111122333332 2678999999998
Q ss_pred CchHHHHHHHHHhcCCCC-cEEE
Q 021114 188 DAAQADNYEKIFSCMKPN-SILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~g-aiVi 209 (317)
++.....+-.....+.|+ .++.
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa 334 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVA 334 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEE
Confidence 876654333333334443 3444
No 351
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.04 E-value=0.2 Score=48.45 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=52.4
Q ss_pred cccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..++| .+|++||-| ++..|++..+... |+++.+...++- ...+.+++.|... ....|+++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v--~~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKV--RETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEE--EEECCHHHHhCC
Confidence 45788 999999985 9999999999988 998877654321 2234555566432 124699999999
Q ss_pred CCEEEEc
Q 021114 179 SDLVLLL 185 (317)
Q Consensus 179 ADvVILa 185 (317)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999874
No 352
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.03 E-value=0.083 Score=45.83 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
....+| ++|++||+ +. +++..|+.. +.++.+.++... ... -...++. ..+.++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~-P~~~~l~~~------~~~v~v~d~~~~-~~~-~~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQ-PLVEKLKER------GAEVRVFDLNPD-NIG-EEPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----H-CCHHHHCCC------CSEEEEEESSGG-G---SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cH-HHHHHHhcC------CCCEEEEECCCC-CCC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence 355677 99999996 22 377788766 788888777642 111 0111232 3578899999999987
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.-. +-...-+++++++.++++.+++.+
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence 532 112235667777777666666544
No 353
>PRK08328 hypothetical protein; Provisional
Probab=93.94 E-value=0.33 Score=44.90 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|++ .+|.|||+|-+|..++++|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 567888 9999999999999999999988
No 354
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.87 E-value=0.16 Score=49.95 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=54.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCC--cccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVIL 184 (317)
++|+||| .|..|..+.+.|... .+ ++....... .+..... ..... ..+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~-~~~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFG-GKSVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEEC-CcceE-----EEeCchhhccCCCEEEE
Confidence 7999999 599999999999874 33 332222211 1111100 00111 2233333 378999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|.....++.++..+ .|+.|+|.++.
T Consensus 73 a~p~~~s~~~~~~~~~---~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEATN---AGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECChH
Confidence 9998866667666543 58899988763
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.87 E-value=0.5 Score=45.87 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~v~~ADvVILav 186 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++..+..++..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999999998 98876555544444445566776320 000 011223334579999887
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
... ..+++....++++..++..
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 2344555667777666544
No 356
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.84 E-value=0.12 Score=49.43 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=51.0
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~~~~~~~e~v~~A 179 (317)
+++| +++.|+|.|=.|.+++..|.+. |. ++.+.+|..++..+.+... +. .. .....+..+.+.++
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA 195 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence 5678 9999999999999999999988 87 5777777655444444331 11 11 00001223456789
Q ss_pred CEEEEccCCch
Q 021114 180 DLVLLLISDAA 190 (317)
Q Consensus 180 DvVILavP~~~ 190 (317)
|+||-++|...
T Consensus 196 divINaTp~Gm 206 (283)
T PRK14027 196 DGVVNATPMGM 206 (283)
T ss_pred CEEEEcCCCCC
Confidence 99999999654
No 357
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.82 E-value=0.14 Score=53.12 Aligned_cols=75 Identities=24% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVILa 185 (317)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+... ....+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence 4778 9999999999999999999998 9888777776444334443333110 001222222 2357888888
Q ss_pred cCCch
Q 021114 186 ISDAA 190 (317)
Q Consensus 186 vP~~~ 190 (317)
+|...
T Consensus 447 T~vGm 451 (529)
T PLN02520 447 TSVGM 451 (529)
T ss_pred ccCCC
Confidence 88764
No 358
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.78 E-value=0.34 Score=47.52 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (317)
..-|+. .+|.|||+|-+|..+|++|... |. ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 466778 9999999999999999999988 77 555555421 0101 01111
Q ss_pred --CCcee----cCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 160 --AGFTE----ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 160 --~G~~~----~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
..+.. .+-+..+..+.++++|+||.++-......++++...
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 11110 011112345788999999999876665557776544
No 359
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.77 E-value=0.15 Score=50.59 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=50.8
Q ss_pred CEEEEEeccchHHHH-HHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021114 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-~---------~--~~~~e 174 (317)
|||.++|.|+||.+. +..|.+. |++|++.+. .+...+...+.|. ...+. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~-~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDV-NQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEEC-CHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999866 6667666 888765553 3334444444553 11111 0 1 02122
Q ss_pred ---hcCcCCEEEEccCCchHHHHHHHHHhcC
Q 021114 175 ---TISGSDLVLLLISDAAQADNYEKIFSCM 202 (317)
Q Consensus 175 ---~v~~ADvVILavP~~~~~~vl~ei~~~l 202 (317)
.+.++|+|+++++......+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 4458899999999877655555444433
No 360
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.73 E-value=0.29 Score=39.83 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=48.7
Q ss_pred eccchHHHHHHHHHhhhhhhcCCceEEEEecCC---cccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCchHH
Q 021114 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (317)
Q Consensus 118 G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~~~~ 192 (317)
|+|.||..+++.|.+.-+. .++++....+++ .... .....+... ..++++++. +.|+||=|++.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 245544333333 1111 111122221 468899988 999999999888777
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 021114 193 DNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 193 ~vl~ei~~~lk~gaiVi~ 210 (317)
+.+.+.+. .|.-|+.
T Consensus 74 ~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVT 88 (117)
T ss_dssp HHHHHHHH---TTCEEEE
T ss_pred HHHHHHHH---CCCeEEE
Confidence 77766554 4555553
No 361
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.72 E-value=0.18 Score=48.96 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--cccHHHHHHCC-ceecCC-CcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~~~-~~~~~~e~v~~ADvVIL 184 (317)
+||+|||. |++|.++|..|... ++ ++++.+... ...++...... ...... ..+++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 444444321 11122111111 111000 01234688999999998
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 753
No 362
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.72 E-value=0.84 Score=45.28 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=80.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC-----H----HhhcC-c
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-----I----YETIS-G 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-----~----~e~v~-~ 178 (317)
.| .+++|+|+|-+|-+..++++.. |...+++.+.+...++.|++.|.++- ..+ . .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 45 7999999999999999999999 88778899988888999999998751 222 1 22233 7
Q ss_pred CCEEEEccCCchHHHHHHHHHhc-CCCCcEEEE-ecCc--hhhhhhhcccCCCCCccEE-----EeccCCCChhhHHHHh
Q 021114 179 SDLVLLLISDAAQADNYEKIFSC-MKPNSILGL-SHGF--LLGHLQSIGLDFPKNIGVI-----AVCPKGMGPSVRRLYV 249 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~-lk~gaiVi~-~~Gv--~l~~~~~~~~~l~~~i~vV-----~vhPn~pg~~~r~lf~ 249 (317)
+|.+|-++-... ++++-+.. -+-|..+++ +++. .+. +.. ..+-.+..+. ..-|..--+..-++|.
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~--~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~ 328 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRP--FQLVTGRVWKGSAFGGARPRSDIPRLVDLYM 328 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cCh--HHeeccceEEEEeecCCccccchhHHHHHHH
Confidence 899998887654 44432222 234665542 2221 110 110 0111111111 2566666666788999
Q ss_pred hcc
Q 021114 250 QGK 252 (317)
Q Consensus 250 ~G~ 252 (317)
+||
T Consensus 329 ~Gk 331 (366)
T COG1062 329 AGK 331 (366)
T ss_pred cCC
Confidence 985
No 363
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.69 E-value=0.21 Score=49.36 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=54.7
Q ss_pred CEEEEEec-cchHHHHHHHHHh-hhhhhcCCce---EEEEe-cC-CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL-RK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~-~~~~~~~G~~---Vivg~-r~-~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
++|||||. |..|+.+.+.|.+ . .++ +.... .+ ..+......+ ....+ ..+.++ +++.|+|++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~~-~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKINS-FEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHHH-hcCCCEEEE
Confidence 68999995 9999999999984 4 444 32222 21 1111111100 11110 124433 478999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|.....++..+.. +.|+.|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887666766653 368899988764
No 364
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.68 E-value=0.64 Score=43.29 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=55.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
-.++| +++.|||.|.+|..=++.|.+. |.+|++....-.+.+....+.| +...... .+. +-+..+++||.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~~~-~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-YDK-EFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CCh-HHhCCCcEEEE
Confidence 56678 9999999999999989999888 8887665443222332223333 2211111 122 34678999999
Q ss_pred ccCCchHHHHHHHHH
Q 021114 185 LISDAAQADNYEKIF 199 (317)
Q Consensus 185 avP~~~~~~vl~ei~ 199 (317)
||.+....+-+.+..
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999887766554443
No 365
>PRK15076 alpha-galactosidase; Provisional
Probab=93.62 E-value=0.091 Score=53.21 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCEEEEEeccchHHHHHH--HHHhhhhhhcCCceEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhcCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
++||+|||.|+||.+.+. .+... .+-.+.+|++.+.. ++..+.+ ...+....-...+|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 379999999999976655 55311 01114466555443 3222211 11221100012457789999999
Q ss_pred EEEEccCC
Q 021114 181 LVLLLISD 188 (317)
Q Consensus 181 vVILavP~ 188 (317)
+||.++-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99998755
No 366
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.24 Score=50.30 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=46.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH---HHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~---~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+.| ++|+|+|+|.=|.+.|+.|++. |.+|++.+.+...... ..++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999999 9998877644322111 222222221 1 1123456788999998
Q ss_pred cc
Q 021114 185 LI 186 (317)
Q Consensus 185 av 186 (317)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 53
No 367
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.52 E-value=0.47 Score=47.25 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| ++|+|.|+ -+-...+++.|.+. |.+|.+++..-.. .. ....+. ..+++|+
T Consensus 309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~-~~~~~~------~~~~~~~ 373 (411)
T TIGR03026 309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EE-VKGLPL------IDDLEEA 373 (411)
T ss_pred hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hh-hhhccc------CCCHHHH
Confidence 35789 99999998 45677888888888 9988665543221 11 111111 3578899
Q ss_pred cCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEe
Q 021114 176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~-vl~ei~~~lk~gaiVi~~ 211 (317)
++++|+|++++.-....+ -++++...|++ .+|+|.
T Consensus 374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 999999999999887765 35566666654 467764
No 368
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.49 E-value=0.27 Score=48.14 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=53.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCcee--------cCCC--cCCHHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTE--------ENGT--LGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~--------~~~~--~~~~~e~v~~A 179 (317)
++|+|+| .|.+|..+.+.|.+. ..+++....+..+..-+... ..++.. .+-. ..+.+ .+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCC
Confidence 7899998 899999999999875 02354433233211000000 011100 0000 12333 45789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+|++++|.....++.+.+.. .|..++|.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999866666654433 5777887776
No 369
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.49 E-value=0.29 Score=45.68 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|++ .+|.|||+|-+|..+|++|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 370
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.47 E-value=0.54 Score=45.00 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .++.|+|.|.+|...++.++.. |.+|+...+. ++..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 47 8999999999999999988888 9876554444 445788899987531 11111112347888877665
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
. ..+++.++.++++-.++..+
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEe
Confidence 3 35666667788877766544
No 371
>PLN00106 malate dehydrogenase
Probab=93.45 E-value=0.2 Score=48.92 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=42.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcc--cHHHHHHC-CceecC-CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAA-GFTEEN-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~--s~~~A~~~-G~~~~~-~~~~~~~e~v~~ADvVIL 184 (317)
.||+|||. |.+|.++|..|... +. ++.+.+....+ .++..... .....+ ....+..+.+++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999876 54 45554443211 11111000 011101 013356789999999999
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 753
No 372
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=93.44 E-value=0.74 Score=44.60 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHH-HHHCCceecCCCcCCHHhhcCcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
..++| .+|++||- ++...|++..+... |++|.+.....- ...+. +++.|... ....+++++++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASI--EVTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeE--EEEcCHHHHhCCC
Confidence 45788 89999996 78999999999888 998766653321 11111 45566321 1146999999999
Q ss_pred CEEEEc
Q 021114 180 DLVLLL 185 (317)
Q Consensus 180 DvVILa 185 (317)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
No 373
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.43 E-value=0.3 Score=48.91 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=46.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++.+ ++|.|+|.|..|.+.|+.|++. |++|.+.+..... ..+...+ .|+....+ ...++...+.|+||
T Consensus 2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA 72 (445)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence 3568 9999999999999999999999 9988766544322 1222222 36542101 11234457899999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 853
No 374
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.41 E-value=0.56 Score=46.76 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=51.9
Q ss_pred CEEEEEec-cchHHHHHHHHH-hhhhhhcCCce---EEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr-~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-e~v~~ADvVIL 184 (317)
++|||||+ |..|+.+.+.|. +. ++. +...... ++...- ..+........+. + +..++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 57999995 999999999888 54 443 2222211 110000 1110000011222 1 35789999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~g--aiVi~~~Gv 214 (317)
+.+.....++..+.. +.| ++|+|.++.
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence 998775555555543 467 788988764
No 375
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.32 E-value=0.52 Score=43.13 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. .+|.|||+|-+|..+|++|...
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence 567788 9999999999999999999988
No 376
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.27 E-value=0.4 Score=48.64 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|.|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+.....+
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 998877765421 12355667786431111
Q ss_pred -c---CCHHhhcCcCCEEEEccCC
Q 021114 169 -L---GDIYETISGSDLVLLLISD 188 (317)
Q Consensus 169 -~---~~~~e~v~~ADvVILavP~ 188 (317)
. ...++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1334555679999998754
No 377
>PLN03075 nicotianamine synthase; Provisional
Probab=93.23 E-value=0.4 Score=46.45 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred ccccchhhhhhcCCCccccc--ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH---
Q 021114 85 SLANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--- 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~--~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--- 159 (317)
+|..|..| .+=++-++... ...... ++|..||+|..|-+-.-.++.... +- .+++.+.+++..+.|++
T Consensus 98 ~Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 98 LFPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cCCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhh
Confidence 47777777 55554443321 111256 999999999987755544443311 22 35678877766665554
Q ss_pred --CCceec-CCCcCCHHhh---cCcCCEEEEccC----CchHHHHHHHHHhcCCCCcEEEEec
Q 021114 160 --AGFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 160 --~G~~~~-~~~~~~~~e~---v~~ADvVILavP----~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.|+... .....|..+. ..+-|+|++.+= .....++++.+...|+||.+++.-.
T Consensus 171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 222110 0001233332 468899999852 1334569999999999999987543
No 378
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.13 Score=51.12 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=43.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~v~~ADvVIL 184 (317)
++|||||-|-.|.=|+...+.. |+++++-+.. +..-........+..+ +....+.+++++||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 8999999999999999999998 9998665432 2222222222222100 001246678899999865
No 379
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.11 E-value=0.71 Score=40.84 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEec
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLR 148 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r 148 (317)
+|.|||+|-+|..++++|... |.. +.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 763 544443
No 380
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.10 E-value=0.22 Score=50.80 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
.+++| ++|+|.|+|++|...|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 998765534
No 381
>PLN02527 aspartate carbamoyltransferase
Probab=93.09 E-value=0.62 Score=45.21 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..++| .||++||-+ ++..|++..+... .|+++.+...+. ....+.+.+.|... ....++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEW--EESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEE--EEEcCHHHHhCC
Confidence 45788 999999976 5789999887763 167776654332 22234455555432 124689999999
Q ss_pred CCEEEEc
Q 021114 179 SDLVLLL 185 (317)
Q Consensus 179 ADvVILa 185 (317)
||+|...
T Consensus 219 aDvvyt~ 225 (306)
T PLN02527 219 CDVLYQT 225 (306)
T ss_pred CCEEEEC
Confidence 9999984
No 382
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=92.99 E-value=0.18 Score=49.64 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
+++|||||.|-.|..+++.+++. |+++++.+....... ......... ....| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999999 999876654322211 111122221 11223 4557788888754
No 383
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.99 E-value=0.21 Score=47.43 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=46.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILavP 187 (317)
|+|.|+| .|.+|..+++.|.+. |++|+...|+.++. ......|+....+... ++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99987777653321 1112234321111122 35677899999998754
No 384
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.98 E-value=0.61 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~---------~G~~~~~~~~~~~~e~v~~ADv 181 (317)
++|.|||.|.+--+...-.+.. +.. .+.+.|.++...+.+++ .+..-......+...-+.+.|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~------~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH------GPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H------TT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 4999999999987776665554 322 34566766655554432 1111100001122223578999
Q ss_pred EEEccCCc----hHHHHHHHHHhcCCCCcEEE--EecCc
Q 021114 182 VLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGF 214 (317)
Q Consensus 182 VILavP~~----~~~~vl~ei~~~lk~gaiVi--~~~Gv 214 (317)
|+++.-.. .-.++++.+..+|++|+.|+ -.+|.
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 99998776 44569999999999999887 45665
No 385
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=92.97 E-value=0.36 Score=47.35 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=49.7
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| .||++||-+ ++..|++..+... |+++.+...+. +...+ .+.+.|... ....+++++
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 35778 999999975 8888999988888 99877665432 12222 233456321 125699999
Q ss_pred cCcCCEEEEc
Q 021114 176 ISGSDLVLLL 185 (317)
Q Consensus 176 v~~ADvVILa 185 (317)
+++||+|..-
T Consensus 222 ~~~aDvvy~~ 231 (332)
T PRK04284 222 VKGSDVIYTD 231 (332)
T ss_pred hCCCCEEEEC
Confidence 9999999985
No 386
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.87 Score=40.84 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 99999995 89999999999998 99887666653
No 387
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.87 E-value=0.49 Score=46.65 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. .+|.|||+|-+|..++++|...
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
No 388
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.79 E-value=0.61 Score=46.10 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r 148 (317)
...|++ ++|.|||+|-+|..++.+|... |. ++++.++
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~ 167 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDH 167 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 356788 9999999999999999999998 77 4444443
No 389
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.74 E-value=0.44 Score=47.52 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=45.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++.+ ++|.|||+|-.|.+.++.|++. |++|.+.+...........+.|+.... -....+.+++.|+||..-
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~--~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHT--GSLNDEWLLAADLIVASP 73 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEe--CCCCHHHhcCCCEEEECC
Confidence 4667 8999999999999999999998 998765554322211112234654310 112334567889877643
No 390
>PRK08223 hypothetical protein; Validated
Probab=92.73 E-value=0.67 Score=44.75 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=26.5
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...-|+. .+|.|||+|-+|..++++|...
T Consensus 21 ~Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 21 EQQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 3577888 9999999999999999999998
No 391
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.72 E-value=0.33 Score=48.42 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCEEEEEec-cchHHHHHH-HHHhhhhhhcCCce---EEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~-~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|++|||||. |..|+.+.+ .|.+. .+. +.. ..+. ++-..-.. .|....-....+. +.++++|+|++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~ 71 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIIT 71 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcccccCCCcceEEecCCh-hHhcCCCEEEE
Confidence 468999995 999999997 55555 553 433 2221 00000000 1111000001223 34578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~g--aiVi~~~Gv 214 (317)
++|.....++..+... .| ++|+|.+|.
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECChH
Confidence 9998866667766544 57 678888764
No 392
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.72 E-value=0.54 Score=45.31 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=39.1
Q ss_pred EEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--C--ceecC-CCcCCHHhhcCcCCEEEEccC
Q 021114 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEEN-GTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 116 IIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~-~~~~~~~e~v~~ADvVILavP 187 (317)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+. . +...+ ....+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 4555554333222222221 1 00000 001234578899999999754
No 393
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=92.71 E-value=0.43 Score=46.94 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~v 176 (317)
.++| .+|++||-+ ++..|++..+... |+++.+...+. ....+ .+.+.|... ....++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKI--TLTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4778 999999976 7899999998888 99876654332 11122 233445321 0146999999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 394
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.70 E-value=0.44 Score=47.35 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--c-----------------ccH---HHHHH--
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--S-----------------RSF---AEARA-- 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~-----------------~s~---~~A~~-- 159 (317)
...|+. .+|.|||+|-+|..++++|... |. ++.+.++.. . +.. +...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 567788 9999999999999999999998 76 444443320 0 000 00111
Q ss_pred CCc--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 160 ~G~--~~~~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
..+ ...+... .+..+.++++|+|+-|+-.-....+++++..
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 1100111 2345788999999888877665557776543
No 395
>PRK06392 homoserine dehydrogenase; Provisional
Probab=92.69 E-value=0.46 Score=46.50 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhh--hhcCCceEEE-EecCCc----c--cHHH---HHHCCceecCCCcC--CHHhhc-
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKV-GLRKGS----R--SFAE---ARAAGFTEENGTLG--DIYETI- 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~--~~~~G~~Viv-g~r~~~----~--s~~~---A~~~G~~~~~~~~~--~~~e~v- 176 (317)
++|+|||+|++|+.+++.|++.-+ ..+.+++++. .+++.. . ..+. ..+.|... ..... +.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~-~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLE-EIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccc-cCCCCcCCHHHHhc
Confidence 489999999999999999977311 1123455432 232211 1 0111 01112110 00011 455553
Q ss_pred CcCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEE
Q 021114 177 SGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 177 ~~ADvVILavP~~~~-~~vl~ei~~~lk~gaiVi~ 210 (317)
.++|+||=++|.... ...+.-+.+.|+.|.-|+.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT 114 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT 114 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc
Confidence 478999999974321 1123333444556665553
No 396
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.67 E-value=0.28 Score=48.07 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCce---EEEEecCC--cccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEE
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG--SRSFAEARAAG--FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~--~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+|+||| .|..|..+.+.|.+. ++. +.+..+.. .+... -.| .... -.+. +.++++|+||+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~~~~---~~~~-~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKELEVN---EAKI-ESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeEEEE---eCCh-HHhcCCCEEEE
Confidence 589999 899999999999886 663 22222221 11111 112 1110 0123 34589999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|.....++..++. +.|+.|+|.++
T Consensus 68 a~g~~~s~~~a~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 68 SAGGSVSKEFAPKAA---KCGAIVIDNTS 93 (339)
T ss_pred CCCHHHHHHHHHHHH---HCCCEEEECCH
Confidence 999887777766554 35778888776
No 397
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.66 E-value=0.36 Score=52.33 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.3
Q ss_pred CEEEEEeccchHHHH-HHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|.|||+|-.|.+. |+.|++. |++|.+.+.+.....+...+.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 579999999999997 9999999 99987655443333344455676542 22234667789999875
No 398
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.62 E-value=1.2 Score=44.03 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e----~v--~~ADv 181 (317)
.| .++.|.|.|.+|...++.++.. |.++++..+.+.+..+.+++.|+..-+... .+..+ .. ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 57 8999999999999999999998 987665555555567888888874211111 12222 22 24799
Q ss_pred EEEccCCchH-----------HHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~-----------~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++-.... ...+++.++.++++-.++..+
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 9988875421 235666667777777666544
No 399
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.54 E-value=0.33 Score=46.23 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=48.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
+++.|+|.|-.+.+++..|.+. |. ++.+.+|..++..+.+...+... ..+. ....+|+||-++|...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 7899999999999999999988 87 58888887655544554443321 0011 1256899999999654
No 400
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.54 E-value=0.89 Score=42.93 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=65.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcC---cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~v~---~AD 180 (317)
|.| ++|.=||+| |+.++.-|.+. |..| .|.|-.++..+.|+ +.|+.. +....+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999998 67888888888 9876 57777777776665 344442 223456666665 579
Q ss_pred EEEE-----ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVIL-----avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+. |+|+... ++.....++|||.++.++.
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLST 161 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEec
Confidence 9876 4555433 6778888999998887653
No 401
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.48 E-value=0.57 Score=45.56 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-c-H----HHHHHCCceecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s-~----~~A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
.++| +||++||- +++..|++..+... |+++.+...+.-. . . +.+.+.|-.. ...+++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a 219 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA 219 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence 5788 99999996 68999999999888 9988766544311 1 1 2233344221 146899999999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+|..-+
T Consensus 220 Dvvy~d~ 226 (311)
T PRK14804 220 DYVYTDT 226 (311)
T ss_pred CEEEeee
Confidence 9999854
No 402
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.38 E-value=0.31 Score=50.53 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC--------------------cccHHHHHHCCceec-
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (317)
.-.| ++|.|||.|.+|.+.|..|++. |++|++.++.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999999 99887765321 123355677786421
Q ss_pred CCCc-C--CHHhhcCcCCEEEEccCCc
Q 021114 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (317)
Q Consensus 166 ~~~~-~--~~~e~v~~ADvVILavP~~ 189 (317)
+... . +.++.-...|+||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2334445689999988543
No 403
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=92.36 E-value=0.51 Score=45.78 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=47.4
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..++| .||++||- +++..|++..+... |+++.+...++-.. .. . ..+. ...+++|++++||+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~-~~-~-~~~~----~~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLP-EG-M-PEYG----VHTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCc-cc-c-cceE----EECCHHHHhCCCCEE
Confidence 45788 99999997 58999999999998 99876665432110 00 1 0122 256999999999998
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
....
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 8743
No 404
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.35 E-value=1.1 Score=41.01 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.3
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhc-Cc
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~e~v-~~ 178 (317)
...++ |+|.|+| .|.+|..+++.|.+. |++|+...|...+..+.... .++........+ +.+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45567 9999999 599999999999998 99887666653321111111 122110111222 33455 57
Q ss_pred CCEEEEccCC
Q 021114 179 SDLVLLLISD 188 (317)
Q Consensus 179 ADvVILavP~ 188 (317)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999988654
No 405
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.32 E-value=0.84 Score=44.48 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHH----HHCC--ceecCCCcCCHHhhc
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G--~~~~~~~~~~~~e~v 176 (317)
|+| +|+++||=| ||+.|+....... |+++.+.... +++-.+.| .+.| +.. ..|++|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999966 6888888887777 9988777543 23333333 3334 332 46999999
Q ss_pred CcCCEEEEccCCchHH--HHHHHHHhcCC
Q 021114 177 SGSDLVLLLISDAAQA--DNYEKIFSCMK 203 (317)
Q Consensus 177 ~~ADvVILavP~~~~~--~vl~ei~~~lk 203 (317)
++||+|..=+..+.-. +..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 9999999877655422 23334444443
No 406
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.27 E-value=0.32 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEeccchHHHHHHHHHhh
Q 021114 113 QIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~ 133 (317)
||.|||+|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999998
No 407
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.27 E-value=1.2 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhh
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
-||+|||. |.+|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 68999999 99999999999876
No 408
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.17 E-value=0.57 Score=46.74 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
..-|+. .+|.|||+|-+|..+|++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 456777 9999999999999999999988
No 409
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=92.12 E-value=1.1 Score=44.14 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhcC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v~ 177 (317)
.++| .+|++||- .++..|++..+... |++|.+...+. ..-.+. +...|... ....+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSV--LVTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeE--EEEcCHHHHhC
Confidence 5888 99999996 57888888888877 99877664432 112222 22345321 01469999999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 410
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.06 E-value=0.53 Score=46.24 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~v 176 (317)
.|+| .+|++||-+ ++..|++..+... |+++.+...+. +... +.+.+.|... ....++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARI--TVTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999986 6788888888887 99877665332 1111 2233456321 1257999999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 411
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.99 E-value=0.45 Score=47.29 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=43.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+|.|||+|-.|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECC
Confidence 479999999999999999999 9988766544322121 112 246643111 23 45678899998853
No 412
>PRK01581 speE spermidine synthase; Validated
Probab=91.89 E-value=1.2 Score=44.46 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---------CceecC--CCcCCHHhhc-
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEEN--GTLGDIYETI- 176 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~--~~~~~~~e~v- 176 (317)
..-++|.|||.| .|..+...|+.. +...+...+.++...+.|++. .+.+.. -...|..+.+
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH
Confidence 333899999998 455555555443 333345566666666777641 110000 0023444433
Q ss_pred ---CcCCEEEEccCCchH--------HHHHHHHHhcCCCCcEEEEecC
Q 021114 177 ---SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 177 ---~~ADvVILavP~~~~--------~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.+-|+||+-+|+... .++++.+...|+||-+++.-++
T Consensus 222 ~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 222 SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999999876421 3466788899999998765444
No 413
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.88 E-value=0.48 Score=47.48 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
-+|.|||+|-.|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999999 9988766544322 2222223 26543100 1224556789999884
No 414
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.87 E-value=0.81 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
.+|+| ++|.|.|.|++|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999999 998765444
No 415
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.86 E-value=1.5 Score=42.26 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~v--~~ADv 181 (317)
+| .+|.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 47 8999999999999999999998 98533455444556677777775210 111112222 22 24788
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+=++... ..+++....++++-.++..+
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence 88777642 23344445566666655443
No 416
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.84 E-value=0.91 Score=46.17 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc-eecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| +++.|||-|.++..=++.|.+. |.+|++....-.+......+.|- ....... . .+-++++|+||
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~ 77 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAI 77 (457)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEE
Confidence 468999 9999999999999989999988 88776653322222333333332 2111111 2 34578999999
Q ss_pred EccCCchHHH
Q 021114 184 LLISDAAQAD 193 (317)
Q Consensus 184 LavP~~~~~~ 193 (317)
.||.+....+
T Consensus 78 ~at~d~~~n~ 87 (457)
T PRK10637 78 AATDDDAVNQ 87 (457)
T ss_pred ECCCCHHHhH
Confidence 9999987755
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.84 E-value=0.53 Score=46.38 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCc---eecCCCcCCHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGF---TEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~---~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+| +.+||+|+|-+|.==.+..++. |++|++..+.+.+ .+++.+ .|. ++.-....-.+++...-|.++-
T Consensus 181 pG-~~vgI~GlGGLGh~aVq~AKAM------G~rV~vis~~~~k-keea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PG-KWVGIVGLGGLGHMAVQYAKAM------GMRVTVISTSSKK-KEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CC-cEEEEecCcccchHHHHHHHHh------CcEEEEEeCCchh-HHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcce
Confidence 68 9999999998887666777777 9998766655433 344443 553 2200000112334445566665
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+++.- ...-++....+||++-.++.+
T Consensus 253 ~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 253 TVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred eeeec-cccchHHHHHHhhcCCEEEEE
Confidence 55532 122344455566655554433
No 418
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.75 E-value=1.5 Score=39.99 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--cCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--v~~ADvVILa 185 (317)
+| .+|.|.|.|.+|.+..+.++.. |.+ |+ ..+.+.+..+.+.+.|..+ ......++. -...|+|+-+
T Consensus 97 ~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi-~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~~ 166 (277)
T cd08255 97 LG-ERVAVVGLGLVGLLAAQLAKAA------GAREVV-GVDPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIEA 166 (277)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEE-EECCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEEc
Confidence 57 8999999999999999999988 887 54 4444444456777777221 111111111 1358999987
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.... .+.+....++++..+++.+
T Consensus 167 ~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 167 SGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred cCChH---HHHHHHHHhcCCcEEEEEe
Confidence 76433 4555666777777666554
No 419
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=91.70 E-value=0.64 Score=45.71 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| .||++||-+ ++..|++..+... |+++.+...+. +...+ .++..|... ....+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKI--TITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 45788 999999987 7888999988888 99876664332 11111 233355321 114689999
Q ss_pred cCcCCEEEEcc
Q 021114 176 ISGSDLVLLLI 186 (317)
Q Consensus 176 v~~ADvVILav 186 (317)
+++||+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999853
No 420
>PLN02342 ornithine carbamoyltransferase
Probab=91.68 E-value=0.68 Score=45.83 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCC---ceecCCCcCCHHhhcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETIS 177 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~~~~~~~~~e~v~ 177 (317)
..|+| .||++||- -++..|++..+... |+++.+...+. ....+.+.+.| +.. ..+++|+++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~ 258 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVK 258 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhC
Confidence 45788 99999996 46888888888877 99876664332 22233444444 222 468999999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
+||+|..-.
T Consensus 259 ~aDVvy~~~ 267 (348)
T PLN02342 259 GADVVYTDV 267 (348)
T ss_pred CCCEEEECC
Confidence 999999874
No 421
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.67 E-value=1.5 Score=43.04 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
.| .+|.|.|.|.+|...++.++.. |.+|++..+.+++..+.+++.|....- ...+ ..+.....|+|+-+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCHHHHHHhhCCCcEEEEC
Confidence 57 8999999999999999999999 988766555444445566677763200 0111 22233457999988
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+.... .+++..+.++++..++..
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344445556666665544
No 422
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.61 E-value=2.2 Score=37.82 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| ++|.|.|. |.+|..+++.|.+. |++|++..|+.+
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 77999999999998 999877776543
No 423
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.33 E-value=0.87 Score=44.63 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=52.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHHCCcee---------cC------CC---c---C
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---L---G 170 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~------~~---~---~ 170 (317)
+|||+|+|.||..+.+.|.+.- .+.+++|.-.++. +.+.+....+++-+. ++ +. . .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 5899999999999999987640 0013565433332 222233333322110 00 00 1 1
Q ss_pred CHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 171 DIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 171 ~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++++.- .++|+|+.|++.....+...+. ++.|+.+++.++
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~Sa 121 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFSH 121 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEecC
Confidence 333321 4899999999987766655433 345666555443
No 424
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=91.33 E-value=0.6 Score=46.87 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.0
Q ss_pred EEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+|-|||.|-.|.+ +|+.|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987655443322333445576531 11223457789999885
No 425
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=91.30 E-value=0.85 Score=44.91 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~v 176 (317)
.++| .+|++||-+ ++..|++..+... |+++.+...+. ..-. +.+.+.|... ....+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i--~~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNI--TLTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999976 6899999998888 99876664332 1111 2234456321 1246999999
Q ss_pred CcCCEEEEc
Q 021114 177 SGSDLVLLL 185 (317)
Q Consensus 177 ~~ADvVILa 185 (317)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
No 426
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.28 E-value=0.83 Score=42.40 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=57.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcC---cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~---~AD 180 (317)
.+| ++|.-||+|. | .++..+.+. |...+++.+.++...+.|++ .++.. .-++.. ..|
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~-------~~~~~~~~~~fD 181 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL-------NVYLPQGDLKAD 181 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc-------eEEEccCCCCcC
Confidence 467 9999999998 5 455556665 65445677777665555543 23310 001111 579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+..........+++++...||||..++.+
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887665555566788999999999988765
No 427
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.28 E-value=1.6 Score=42.18 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~v~~ADvVILav 186 (317)
+| .++.|+|.|.+|...++.++.. |.++++..+.+++....+.+.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 67 8999999999999999999998 98776655544333233345675320 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.... .+++....++++..++..+
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEEC
Confidence 7432 3444555677777666544
No 428
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.27 E-value=0.78 Score=48.56 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=50.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+.+.|+.....+
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999999 999887765421 02344556675421110
Q ss_pred ----cCCHHhhcCcCCEEEEccC
Q 021114 169 ----LGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 169 ----~~~~~e~v~~ADvVILavP 187 (317)
..+.++...+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1134555668999999874
No 429
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.24 E-value=0.79 Score=46.13 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEec-----c---chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021114 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (317)
Q Consensus 107 ~l~GikkIGIIG~-----G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (317)
.++| +||+|+|- | ++..|++..+... |+++.+...++ +...+. +.+.|... ....
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i--~~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSF--RQVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 3777 89999986 4 5668888888887 99887665442 121222 34455321 0146
Q ss_pred CHHhhcCcCCEEEEcc
Q 021114 171 DIYETISGSDLVLLLI 186 (317)
Q Consensus 171 ~~~e~v~~ADvVILav 186 (317)
+++|++++||+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 9999999999999874
No 430
>PRK07411 hypothetical protein; Validated
Probab=91.10 E-value=0.67 Score=46.28 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=52.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--c-----------------ccH---HHHHH--
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--S-----------------RSF---AEARA-- 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~-----------------~s~---~~A~~-- 159 (317)
...|+. .+|.|||+|-+|..++++|... |+ ++++.++.. . +.. +...+
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467788 9999999999999999999998 76 333332210 0 000 01111
Q ss_pred CCceec--CCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 021114 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 160 ~G~~~~--~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~ 199 (317)
..+..+ .... .+..+.+.+.|+||.++=.-....++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111100 0111 234567899999998887766656777654
No 431
>PLN02477 glutamate dehydrogenase
Probab=91.10 E-value=0.42 Score=48.33 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi 144 (317)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999998 99876
No 432
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=91.08 E-value=1.3 Score=42.99 Aligned_cols=90 Identities=9% Similarity=0.168 Sum_probs=67.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~ 188 (317)
.+|.|.| .|.-|...-..+++. |-+++.|...+.. ...-.|+.. +.++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 899999999999999 9888888766420 011246653 5688887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
....+.+++.... .-..++++++||.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~ 105 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence 9998888876652 2244778899985
No 433
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.08 E-value=1.5 Score=41.77 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999998 98754555444455566666775
No 434
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=91.06 E-value=3.9 Score=32.35 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhcCcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~----~~e~v~~AD 180 (317)
++ ++|.=||+|. |. ++..+.+.. +...+++.+.++...+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~-G~-~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GS-ITIEAARLV-----PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CH-HHHHHHHHC-----CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 36 7899999998 33 333333320 2223466766555444432 2222100000112 122335799
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
+|++..++....++++++.+.||+|..++.
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987776667889999999999887663
No 435
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.05 E-value=1.8 Score=40.97 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=57.1
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhcC--cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---e~v~--~AD 180 (317)
.+| .+|.|+|.|.+|...++.++.. |.+ |++ .+.+++..+.+++.|...- +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~-~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIG-VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 9999999999999999999998 987 654 4444455667777775210 00001111 2222 578
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+-++..... +.+....++++..++..
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 88888775432 23334455565555543
No 436
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.03 E-value=0.84 Score=44.42 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCE
Q 021114 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 107 ~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADv 181 (317)
.++| .+|++||= +++..|++..+... |+ ++.+.....- ...... ..+.. ..++++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 89999997 69999999999988 98 7766543321 100111 12332 4689999999999
Q ss_pred EEE
Q 021114 182 VLL 184 (317)
Q Consensus 182 VIL 184 (317)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 987
No 437
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.03 E-value=1.7 Score=42.14 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 47 8999999999999999999988 98423444444556677788886320 000112222121 47888
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+-++.... .++.....++++..++..
T Consensus 264 id~~G~~~---~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 264 FEMAGSVP---ALETAYEITRRGGTTVTA 289 (371)
T ss_pred EECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 88875432 333334455555555433
No 438
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.99 E-value=1.4 Score=39.94 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| |++.|+| .|-+|.++|+.|.+. |++|++..++.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~ 42 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAE 42 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence 4678 9999999 589999999999998 998876655443
No 439
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.88 E-value=0.42 Score=46.67 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=40.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CCceec----CCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE----NGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~----~~~~~~~~e~v~~ADvVILa 185 (317)
+||+|||.|.+|.++|..|... +.+-++.+.+.......-.+.+ ...... .-..+...+.+++||+|+++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1232455555442211111111 110000 00011125678999999998
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
No 440
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.82 E-value=1.5 Score=43.03 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=47.4
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hh-hhcCCceEEEEecCC-c---------cc-HHHHHHCCceec--C--C-CcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKG-S---------RS-FAEARAAGFTEE--N--G-TLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~-~~~~G~~Vivg~r~~-~---------~s-~~~A~~~G~~~~--~--~-~~~~ 171 (317)
.+|+|+|+|++|..+++.|.+. +. ..|..++|+...+++ . +. .+...+.|.... + . ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999998773 11 122224443222211 0 00 111111121100 0 0 0126
Q ss_pred HHhhc--CcCCEEEEccCCchHHHHHHHHH
Q 021114 172 IYETI--SGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 172 ~~e~v--~~ADvVILavP~~~~~~vl~ei~ 199 (317)
.+|++ .++|+||=+++.....+++.+.+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al 112 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL 112 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH
Confidence 67776 58999999997765555555443
No 441
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.59 E-value=1.3 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
..++| +++-|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45788 99999995 89999999999999 99987776653
No 442
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.51 E-value=3.5 Score=36.61 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.1
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----cCcCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~-----v~~ADv 181 (317)
-+| .+|.|.|.|.+|.++++.++.. |.+|+...++ +...+.+++.|...- +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 457 8999999999999999999988 8877555444 344555555553210 0001122222 246899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++... ..++.....++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888763 23444555666666665444
No 443
>PLN02740 Alcohol dehydrogenase-like
Probab=90.28 E-value=1.8 Score=42.22 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=52.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |.. |+ ..+.+++..+.+++.|...- +... .+..+.+. ..
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi-~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKII-GVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEE-EEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 47 8999999999999999999998 984 54 44444556777888876310 0000 01222221 47
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKP 204 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~ 204 (317)
|+|+=++-... .+.+.+..+++
T Consensus 270 dvvid~~G~~~---~~~~a~~~~~~ 291 (381)
T PLN02740 270 DYSFECAGNVE---VLREAFLSTHD 291 (381)
T ss_pred CEEEECCCChH---HHHHHHHhhhc
Confidence 88888776432 33333344545
No 444
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.26 E-value=1.1 Score=43.19 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~ 147 (317)
+.-|.. .+|.|||+|-+|..+|++|... |.. +.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456677 8999999999999999999998 873 44444
No 445
>PRK10083 putative oxidoreductase; Provisional
Probab=90.25 E-value=3 Score=39.28 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=58.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHh-hhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC----cCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~----~ADv 181 (317)
-+| .+|.|+|.|.+|...++.++. . |.++++..++.++..+.+.+.|+..- +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999999988885 6 87655656555556677777776320 101112334332 3467
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|+-++... ..+.+....++++..+++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777632 2344555566666665544
No 446
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=90.14 E-value=0.78 Score=39.76 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=48.6
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~ 192 (317)
++.|+|.|..|..++..|++. |++++...+.+.... ...-.|+..- +...++.+..++.|.+++++++....
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence 378999999999999999988 998766665542211 1112344320 11122334455578899999755543
Q ss_pred -HHHHHHHh
Q 021114 193 -DNYEKIFS 200 (317)
Q Consensus 193 -~vl~ei~~ 200 (317)
++++.+..
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 35555443
No 447
>PRK07877 hypothetical protein; Provisional
Probab=90.12 E-value=0.6 Score=50.43 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred hhhhhhcccccchhhhhhcCCCccc------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecC
Q 021114 78 VFKKDAISLANRDEFIVRGGRDLFK------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (317)
Q Consensus 78 ~~~~~~~~~~~~~e~~v~~G~w~f~------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~ 149 (317)
+|+...+++.+-+|+ ++ =|+... ....-|+. .+|+|||+| +|+.+|..|... |. ++++.+..
T Consensus 71 pw~~~~v~~~~~~~~-~~-~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREF-RA-VRLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHh-hH-HHhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 799999999998887 21 133221 14677888 999999999 899999999988 63 34444321
Q ss_pred -----------------Cc-ccHHHHHH-----CCceec--CC--CcCCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 021114 150 -----------------GS-RSFAEARA-----AGFTEE--NG--TLGDIYETISGSDLVLLLISDAAQADNYEKI 198 (317)
Q Consensus 150 -----------------~~-~s~~~A~~-----~G~~~~--~~--~~~~~~e~v~~ADvVILavP~~~~~~vl~ei 198 (317)
+. +....++. ..+..+ +. +..+.+++++++|+|+=|+-.-...-++++.
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 00 11101111 011100 00 1135677889999999888776555566644
No 448
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.08 E-value=1.2 Score=44.55 Aligned_cols=67 Identities=28% Similarity=0.293 Sum_probs=43.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
+|.|||.|..|.+.|+.|.+. |++|.+.++....... ...+.|+...-+...+ ..+.+.+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 9988766654332221 2334566431111111 11357789999884
No 449
>PLN02827 Alcohol dehydrogenase-like
Probab=90.04 E-value=2.3 Score=41.55 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|+..- +... .+..+.+. ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 47 8999999999999999999998 98645555544555677777786310 0000 01222221 468
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCC-cEEEE
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~g-aiVi~ 210 (317)
+|+=++-... .+.+.+..++++ -.++.
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 8887766432 233334445555 44443
No 450
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.93 E-value=1.8 Score=39.16 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
..++| ++|-|+|. |-+|.++++.|.+. |++|++..++
T Consensus 3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 34778 99999996 89999999999998 9988766654
No 451
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=89.92 E-value=1.1 Score=44.46 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=47.8
Q ss_pred ccCCCCEEEEEecc--------chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021114 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (317)
Q Consensus 107 ~l~GikkIGIIG~G--------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (317)
.|+| +||+|+|.| ++..|++..+... |+++.+...+. +...+. +.+.|... ....
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~--~~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKF--NIVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 4778 899999864 3457788888877 99877665432 122222 33456331 1246
Q ss_pred CHHhhcCcCCEEEEcc
Q 021114 171 DIYETISGSDLVLLLI 186 (317)
Q Consensus 171 ~~~e~v~~ADvVILav 186 (317)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 9999999999999874
No 452
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.91 E-value=2.7 Score=37.02 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++. ++|.|+| .|.+|.++++.|.+. |++|++..+++.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4556 8999998 699999999999999 998776666544
No 453
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.80 E-value=2.2 Score=40.86 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++. +.+++..+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~-~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAI-DIDPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE-cCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 9876544 444455667777775
No 454
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.74 E-value=2 Score=40.26 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~v~~ADvVI 183 (317)
+| .+|.|+|.|.+|.++++.++.. |.++++....+.+..+.+.+.|...- +....+..+ .-+..|+++
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEE
Confidence 57 8999999999999999999998 98733344343444555566664210 000011111 124689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
-++... ..+.+....++++..++..+
T Consensus 232 ~~~~~~---~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EATGVP---KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECCCCh---HHHHHHHHHHhcCCEEEEEe
Confidence 887642 24445555666666655443
No 455
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.69 E-value=2.4 Score=42.84 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=63.2
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| ++|+|.|+ .+-+..++..|++. |.+|.+++ +.-...+.....+... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~D-P~v~~~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFD-PWVDAEEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEEC-CCCChhHHHHhcCccc----c-h-hhh
Confidence 35789 99999998 57788889999888 99877654 3211111112233321 1 1 234
Q ss_pred cCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv 214 (317)
+++||+|++++.-....++ ++++...|+...+|+|..++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 7789999999998776653 45666667655688887765
No 456
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.69 E-value=0.96 Score=40.96 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=32.3
Q ss_pred ccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+..++| +++-|.|. |-||.++++.|.+. |++|++..++
T Consensus 4 ~~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 4 LFDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred cccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 446789 99999996 78999999999999 9998776664
No 457
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.69 E-value=2.9 Score=40.43 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=52.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhc-----CcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v-----~~A 179 (317)
-+| .+|.|+|.|.+|...++.++.. |...++..+..+...+.+++.|...- +... .+..+.+ ...
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCC
Confidence 357 8999999999999999999998 98433444444455667777775210 0000 0112222 247
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKP 204 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~ 204 (317)
|+|+-++... ..+.+....+++
T Consensus 256 d~vid~~g~~---~~~~~~~~~l~~ 277 (365)
T cd08277 256 DYSFECTGNA---DLMNEALESTKL 277 (365)
T ss_pred CEEEECCCCh---HHHHHHHHhccc
Confidence 8888777643 234455556654
No 458
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.63 E-value=1.1 Score=45.20 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
+|+| ++|+|=|+||.|.-.|+.|.+. |.+|+...++..
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 4999 9999999999999999999988 998877666543
No 459
>PLN02214 cinnamoyl-CoA reductase
Probab=89.63 E-value=1.2 Score=42.83 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH---HHC---C--ceecCC-CcCCHHhh
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RAA---G--FTEENG-TLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---~~~---G--~~~~~~-~~~~~~e~ 175 (317)
..+++ ++|.|.|. |-+|..+++.|.+. |++|+...|......... ... . +...|- ...+++++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 45678 99999996 99999999999999 998876665432211110 111 1 111010 01235667
Q ss_pred cCcCCEEEEccCC
Q 021114 176 ISGSDLVLLLISD 188 (317)
Q Consensus 176 v~~ADvVILavP~ 188 (317)
++++|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899999887643
No 460
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.63 E-value=3.8 Score=38.99 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----e~v--~~ADv 181 (317)
+| .+|.|.|.|.+|...++.++.. |..+++..+..++..+.+++.|...- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 47 8999999999999999999988 88544555555555677777775310 00011221 122 34799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
++-++... ..+.+....++++..++..
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 88877643 3455556667676666544
No 461
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.55 E-value=0.48 Score=43.85 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=43.3
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhc------Cc-CCE
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETI------SG-SDL 181 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v------~~-ADv 181 (317)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..++........ ++.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4788885 99999999999998 999888777643211 112110001122 344455 45 899
Q ss_pred EEEccCCc
Q 021114 182 VLLLISDA 189 (317)
Q Consensus 182 VILavP~~ 189 (317)
|+++.|+.
T Consensus 71 v~~~~~~~ 78 (285)
T TIGR03649 71 VYLVAPPI 78 (285)
T ss_pred EEEeCCCC
Confidence 99888753
No 462
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=89.49 E-value=1.4 Score=42.73 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhc
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v 176 (317)
..++| .+|++||- +++..|++..+... |+++.+...+. ....+. +.+.|... ....++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSV--ELTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 34788 99999995 78889999988888 99876665332 111122 33455321 0146899999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-.
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 463
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.47 E-value=1 Score=45.42 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=56.4
Q ss_pred cCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 021114 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (317)
Q Consensus 108 l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~ 175 (317)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... ++. ...+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~----~~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVE----LESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCce----EeCCHHHH
Confidence 999 999999973 2344566667776 9987655432 12233222 123 25799999
Q ss_pred cCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEE
Q 021114 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGL 210 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~ 210 (317)
+++||++++++-.++..++ ++.+ .|| +.+|+|
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~-~~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMK-TPVVID 406 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hcc-CCEEEe
Confidence 9999999999998877664 2333 554 345544
No 464
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.36 E-value=1.3 Score=41.34 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHHHH-CC------ceecCCC-cCCHHhhcC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG------FTEENGT-LGDIYETIS 177 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G------~~~~~~~-~~~~~e~v~ 177 (317)
+| ++|.|.| .|-+|..+++.|.+. |++|++..++.... ...... .+ +...|-. ....+++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 46 8999999 799999999999999 99887666543321 111111 11 1110100 124567788
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
++|+||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9999887654
No 465
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.33 E-value=2.4 Score=40.21 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=58.9
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
-+| .++.|.|.|.+|...++.++.. |.++++..++ .+..+.+.+.|...- -...+ ..+.-...|+|+-
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEF-IATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEE-ecCcchhhhhhccCCceEEEE
Confidence 357 8999999999999999999998 9876555444 344566666664310 00011 1122356899998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++... .+++....++++..+++.+
T Consensus 239 ~~g~~~---~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 239 TVSASH---DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CCCCcc---hHHHHHHHhcCCCEEEEEe
Confidence 887642 2445556666666655443
No 466
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=89.32 E-value=1.5 Score=43.19 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
.++| .||++||- +++..|++..|... .|+++.+...++ ....+.+.+.|... ....+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKI--TITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeE--EEEcCHHHHHccC
Confidence 5889 99999997 58899988876643 177776664432 22234455555321 1246999999999
Q ss_pred CEEEEc
Q 021114 180 DLVLLL 185 (317)
Q Consensus 180 DvVILa 185 (317)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 467
>PRK06182 short chain dehydrogenase; Validated
Probab=89.28 E-value=3.1 Score=38.10 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhcC-------
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETIS------- 177 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~v~------- 177 (317)
++ +++.|.|. |-+|.++++.|.+. |++|++..|+.+ ..+...+.++..-.....+.+ ++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~-~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVD-KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46 89999994 89999999999998 998876665533 233232333221001123333 3333
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6799998764
No 468
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.25 E-value=2.9 Score=40.60 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=36.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (317)
.| .+|.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|.
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi-~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRII-AIDINPAKFELAKKLGA 231 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 98 554 44444555677777776
No 469
>PRK07774 short chain dehydrogenase; Provisional
Probab=89.23 E-value=2.8 Score=37.48 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
..++| +++.|.|. |-+|.++++.|.+. |++|++..|.
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~ 39 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADIN 39 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 34678 99999996 99999999999998 9988776665
No 470
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.23 E-value=1.4 Score=46.86 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=49.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (317)
-.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 357 9999999999999999999998 998877765421 0123445566543111
Q ss_pred Cc----CCHHhhcCcCCEEEEccCC
Q 021114 168 TL----GDIYETISGSDLVLLLISD 188 (317)
Q Consensus 168 ~~----~~~~e~v~~ADvVILavP~ 188 (317)
+. .+.++...+.|.||+++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 11 1344444569999998743
No 471
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=89.19 E-value=2.3 Score=41.45 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred cCCchHHHHHHHH--HhcCCCCcEEEEe-cCc---hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 186 ISDAAQADNYEKI--FSCMKPNSILGLS-HGF---LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 186 vP~~~~~~vl~ei--~~~lk~gaiVi~~-~Gv---~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++|.....++++. .-.++||.+|+.. +|- .+..... -.+.+++.+||.++..+.+.+-+. .|+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA 109 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA 109 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence 4555555566633 2348999999964 443 3444333 247899999999999998887776 689
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHcCC
Q 021114 260 NSSFAVHQ-DVDGRATNVALGWSVALGS 286 (317)
Q Consensus 260 ~~iitp~~-d~~~ea~e~a~~l~~alG~ 286 (317)
.++++|.. .....+.++++++......
T Consensus 110 evi~t~~~~g~~~~a~~~a~el~~~~p~ 137 (300)
T COG0031 110 EVILTPGAPGNMKGAIERAKELAAEIPG 137 (300)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhCCC
Confidence 99999983 4367799999999999965
No 472
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.19 E-value=3.8 Score=37.12 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| +++-|.| .|-||.++|+.|.+. |++|++..++.+
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD 43 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 4778 9999998 668999999999999 999887776543
No 473
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=89.18 E-value=0.6 Score=45.05 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=66.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.-+.|+|.|.++........+.. .+=.+|.+|+++.+.+.+.|.... +..+-....+.+++++.+|+|+-++
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~---pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLI---PSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhc---ccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 34789999999999887665540 001268899999877777666221 1111112457889999999999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
+-..- -++ ...+|||+.|-.+++++.
T Consensus 216 lsteP-ilf---gewlkpgthIdlVGsf~p 241 (333)
T KOG3007|consen 216 LSTEP-ILF---GEWLKPGTHIDLVGSFKP 241 (333)
T ss_pred ccCCc-eee---eeeecCCceEeeeccCCc
Confidence 85431 111 245789999989999864
No 474
>PRK09242 tropinone reductase; Provisional
Probab=89.11 E-value=3.5 Score=37.25 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| |++.|+|. |.||.++++.|.+. |++|++..|..
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4678 99999994 79999999999998 99987776653
No 475
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.05 E-value=3 Score=37.06 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|+| .|-+|..+|+.|.+. |+++++..++.
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 599999999999999 99877665543
No 476
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.02 E-value=1.4 Score=39.65 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.8
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
..++| +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34678 99999996 99999999999998 99887666553
No 477
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.00 E-value=0.69 Score=43.88 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi 144 (317)
.+++| ++|.|.|+|++|...|+.|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 67899 9999999999999999999998 99876
No 478
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=88.99 E-value=1.6 Score=44.52 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=48.9
Q ss_pred cCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 108 l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
|+| +||++||- +++..|++..+... .|+++.+...+. +...+.+.+.|... ....+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~-----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v--~~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALY-----RGLKFTLVSPPTLEMPAYIVEQISRNGHVI--EQTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHh-----cCCEEEEECCCccccCHHHHHHHHhcCCeE--EEEcCHHHHhCCCC
Confidence 788 99999998 48899999987653 188876654332 12234444556322 12469999999999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
No 479
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.84 E-value=2 Score=43.60 Aligned_cols=75 Identities=24% Similarity=0.214 Sum_probs=50.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE 165 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~ 165 (317)
..-.| ++|.|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 34467 8999999999999999999998 998877765321 11234555665421
Q ss_pred CCCc----CCHHhhcCcCCEEEEccC
Q 021114 166 NGTL----GDIYETISGSDLVLLLIS 187 (317)
Q Consensus 166 ~~~~----~~~~e~v~~ADvVILavP 187 (317)
.++. .+.++.....|.||+++-
T Consensus 212 ~~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 212 TNVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred eCCEECCcCCHHHHHhhCCEEEEecC
Confidence 1111 133455567999999873
No 480
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.82 E-value=0.58 Score=45.82 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|++|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 46899999999999999999998 99988877653
No 481
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=88.82 E-value=2.2 Score=45.34 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=58.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEE---ecCCc------ccHHHHHHC--Cc--eecC-CCcCCHHh
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG---LRKGS------RSFAEARAA--GF--TEEN-GTLGDIYE 174 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg---~r~~~------~s~~~A~~~--G~--~~~~-~~~~~~~e 174 (317)
+. .||+|||.|.+|.++...|... |..-+.+ +...+ +..+.|++. ++ ..-+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999998 7632222 22111 223445542 21 1101 11346788
Q ss_pred hcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEEEecCc
Q 021114 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++..|+|+..+-+.... +.+++..-.-+.+-+.....|.
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~ 242 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ 242 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 999999999888755544 3444433222222234455554
No 482
>PRK13984 putative oxidoreductase; Provisional
Probab=88.76 E-value=1.5 Score=45.75 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.+ ++|.|||.|..|.+.|..|++. |++|++..+... ...+...+.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 57 8999999999999999999999 998877654321 11234555665421111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 021114 169 -L---GDIYETISGSDLVLLLIS 187 (317)
Q Consensus 169 -~---~~~~e~v~~ADvVILavP 187 (317)
. .+.+++..+.|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 133455557999999986
No 483
>PRK07060 short chain dehydrogenase; Provisional
Probab=88.70 E-value=1.8 Score=38.49 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|.|. |.+|..+++.|.+. |++|++..|+.
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4778 99999997 89999999999998 99887766654
No 484
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.69 E-value=0.85 Score=40.71 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
++++ +++.|+| .|.+|.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4678 9999999 589999999999999 99987766654
No 485
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=88.59 E-value=0.91 Score=43.99 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=39.6
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
+|||||.|-.|..+++.+++. |+++++.+... ......+ ..-+.. ...| +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~a-d~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVA-DHVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhC-ceeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999999 99876654432 1221112 111111 1234 5567788898743
No 486
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.58 E-value=4.5 Score=35.58 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|+| .|.+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 4678 9999999 599999999999998 99877666643
No 487
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.50 E-value=0.78 Score=48.33 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=47.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH---H-----CC--------ceecCCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-----AG--------FTEENGT 168 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~-----~G--------~~~~~~~ 168 (317)
...+| ++|.|.|. |.+|..+++.|.+. |++|++..|..++....+. + .| ++. +.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~--gD 146 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVE--CD 146 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEE--ec
Confidence 34457 89999994 99999999999998 9998777765433211111 0 11 111 12
Q ss_pred cCC---HHhhcCcCCEEEEccC
Q 021114 169 LGD---IYETISGSDLVLLLIS 187 (317)
Q Consensus 169 ~~~---~~e~v~~ADvVILavP 187 (317)
+.+ +++++.++|+||.+.-
T Consensus 147 LtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 147 LEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CCCHHHHHHHhcCCCEEEEccc
Confidence 333 3456788999998864
No 488
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.47 E-value=4.3 Score=39.68 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhc----C--cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~-~~~e~v----~--~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |...+++.+.++...+.+++. +...-+.... +..+.+ . ..|
T Consensus 184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 57 8999999999999999999998 874334554445556666665 3211011111 122222 2 479
Q ss_pred EEEEccCCc------------------hHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~------------------~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++... .-...+++....++++..+++.+
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999887432 12346677778888887776554
No 489
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.42 E-value=4.3 Score=36.75 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=34.1
Q ss_pred ccccccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 101 FKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 101 f~~~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|.-+...|+| +++-|.|. |-+|.++++.|.+. |++|++..+.
T Consensus 6 ~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~ 48 (258)
T PRK06935 6 FSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG 48 (258)
T ss_pred hccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 4434556899 99999995 78999999999998 9988777665
No 490
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.41 E-value=3 Score=39.05 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .++.|.|.|.+|..+++.++.. |.++++..+.. +..+.+.+.|... .....+..-+..|+++.+.+.
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~---~~~~~~~~~~~vD~vi~~~~~ 235 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW---AGDSDDLPPEPLDAAIIFAPV 235 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE---EeccCccCCCcccEEEEcCCc
Confidence 56 8999999999999999999988 98876555543 4456666677532 011111112357888887654
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
. ..+++....++++..++..
T Consensus 236 ~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 236 G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred H---HHHHHHHHHhhcCCEEEEE
Confidence 3 3566677777777666643
No 491
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=88.39 E-value=3.3 Score=39.96 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcC--CHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG--DIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~--~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |.++++.....++..+.+.+.|...- +.... +..+.+ ...|
T Consensus 183 ~g-~~vlI~g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 183 PG-STCAVFGLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCc
Confidence 47 8999999999999999999988 98655555544455566667775310 00001 111111 2467
Q ss_pred EEEEccCCchHHHHHHHHHhcCC-CCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMK-PNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk-~gaiVi~~ 211 (317)
+|+-++... ..+.+....++ ++..++..
T Consensus 256 ~vid~~g~~---~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAFEVIGSA---DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCCEEEEE
Confidence 777766432 23444455555 66555533
No 492
>PRK05717 oxidoreductase; Validated
Probab=88.37 E-value=2.3 Score=38.50 Aligned_cols=38 Identities=21% Similarity=0.039 Sum_probs=31.8
Q ss_pred ccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
--.++| |++.|.| .|.+|.++|+.|.+. |.+|++..+.
T Consensus 5 ~~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 5 NPGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred CcccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 346789 9999999 589999999999998 9988766554
No 493
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=88.35 E-value=4.1 Score=39.01 Aligned_cols=160 Identities=17% Similarity=0.221 Sum_probs=89.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|.|. |.||+.+.+.+... .++++.-+.++..+.. .++ -..|+.. ..++.....++|++
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV~ 73 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADVL 73 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCEE
Confidence 78999997 99999999999876 1456555544432211 111 1123332 23567778899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhh-cccccCCCc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQ-GKEINGAGI 259 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~-G~e~~g~G~ 259 (317)
|=-+-|....++++-...+= -.+|+=+.|++-..++.. ..+.+.+.+| ..||+.--. +..+-++ .+-..+..+
T Consensus 74 IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l-~~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~Di 149 (266)
T COG0289 74 IDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKL-REAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYDI 149 (266)
T ss_pred EECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHH-HHHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCCE
Confidence 98888877777777544432 235666788864333321 1122334443 456664322 1111111 111111222
Q ss_pred eEEEEecc-----CCCHHHHHHHHHHHHHcC
Q 021114 260 NSSFAVHQ-----DVDGRATNVALGWSVALG 285 (317)
Q Consensus 260 ~~iitp~~-----d~~~ea~e~a~~l~~alG 285 (317)
-. +--|. -+++.++.+++.+.+..|
T Consensus 150 EI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 150 EI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred Ee-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 22 22332 456889999999999998
No 494
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.35 E-value=1 Score=34.07 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+|.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999999 99888776653
No 495
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.30 E-value=0.93 Score=47.65 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=46.3
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCC
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~AD 180 (317)
+...... |+|||||-|..|.-+++.+++. |++|++.+.. .............. ....| +.++++++|
T Consensus 16 ~~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~-~~apa~~~AD~~~v--~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 16 PVHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPL-EDCPASSVAARHVV--GSFDDRAAVREFAKRCD 85 (577)
T ss_pred cccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-CCCchhhhCceeee--CCCCCHHHHHHHHHHCC
Confidence 3445667 9999999999999999999998 9987665443 22111111111111 11234 445567899
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+|.....
T Consensus 86 vIt~e~e 92 (577)
T PLN02948 86 VLTVEIE 92 (577)
T ss_pred EEEEecC
Confidence 8866543
No 496
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=88.27 E-value=2.7 Score=40.79 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCC----ceec-CCCcCCHHhhc
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEE-NGTLGDIYETI 176 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~-~~~~~~~~e~v 176 (317)
+..+++. .||.|+|.|..|.+.|..+... |. ++.+.+-...+..-++.... |... +-.....-.+-
T Consensus 14 ~~~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 14 EEKEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVS 86 (332)
T ss_pred ccccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCccccc
Confidence 3455566 8999999999999999998887 65 33333322222222222211 1100 00011122456
Q ss_pred CcCCEEEEccCCchH------------HHHHHHHHhc---CCCCcEEEEec
Q 021114 177 SGSDLVLLLISDAAQ------------ADNYEKIFSC---MKPNSILGLSH 212 (317)
Q Consensus 177 ~~ADvVILavP~~~~------------~~vl~ei~~~---lk~gaiVi~~~ 212 (317)
+++|+||+..--.+. .++++.+.|. ..|++++++++
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvS 137 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVS 137 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 789999997644332 1233444443 26788877655
No 497
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.26 E-value=16 Score=36.59 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--cccHHHHHHCCceec-----------------CCCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARAAGFTEE-----------------NGTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~~s~~~A~~~G~~~~-----------------~~~~~ 170 (317)
+.++-++|.|...--+|.-|+.. |- .+-+..|.+ ++++.+|.+.+-.-. |....
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h------~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~k 77 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAH------GDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIK 77 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhc------cCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHh
Confidence 46789999999999999999887 53 333334432 234445544331110 11134
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHH----HhcCCCCcEEEEecCc--h--hhhhhhcccCCCCCccEEE--------
Q 021114 171 DIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGF--L--LGHLQSIGLDFPKNIGVIA-------- 234 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~vl~ei----~~~lk~gaiVi~~~Gv--~--l~~~~~~~~~l~~~i~vV~-------- 234 (317)
+++++..+=|-+|++||-++..+++++| ++.+|. +|.++..+ . +.+... .+..++.||.
T Consensus 78 d~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~--viLiSptfGsn~lv~~~mn---k~~~daeViS~SsY~~dT 152 (431)
T COG4408 78 DLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKS--VILISPTFGSNLLVQNLMN---KAGRDAEVISLSSYYADT 152 (431)
T ss_pred hHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccE--EEEecccccccHHHHHHHh---hhCCCceEEEeehhcccc
Confidence 6777888889999999999999988753 344432 33344322 2 333332 4445677775
Q ss_pred --eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc-EEecCchhhhhc
Q 021114 235 --VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYKS 300 (317)
Q Consensus 235 --vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~-~~~tT~~~e~~~ 300 (317)
++-..|-+..-..+++ .-+ +.. +..+....+...+.+..+|-.- ++++-++.|++.
T Consensus 153 k~id~~~p~~alTkavKk--------riY-lgs-~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrn 211 (431)
T COG4408 153 KYIDAEQPNRALTKAVKK--------RIY-LGS-QHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRN 211 (431)
T ss_pred eeecccCcchHHHHHHhH--------hee-ecc-CCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcc
Confidence 4444555555455554 223 322 3333456677889999999754 577777777764
No 498
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.19 E-value=4.6 Score=37.85 Aligned_cols=45 Identities=18% Similarity=0.040 Sum_probs=36.0
Q ss_pred CCCcccccccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 97 GRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 97 G~w~f~~~~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+.|... .+.+++| ++|.|.| .|-||.++|+.|.+. |++|++..|.
T Consensus 4 ~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~ 49 (306)
T PRK06197 4 TKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRN 49 (306)
T ss_pred CCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCC
Confidence 455432 3567899 9999999 589999999999998 9988776665
No 499
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.16 E-value=3.8 Score=39.50 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=36.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|.|.+|...++.++.. |. +|++. ...++..+.+++.|.
T Consensus 187 ~g-~~VlV~G~g~vG~~a~q~ak~~------G~~~vi~~-~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KG-STVAIFGLGAVGLAVAEGARIR------GASRIIGV-DLNPSKFEQAKKFGV 233 (369)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHcCC
Confidence 57 8999999999999999999988 98 56544 444455677777775
No 500
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=88.00 E-value=2 Score=48.82 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=59.4
Q ss_pred CcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHH
Q 021114 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEAR 158 (317)
Q Consensus 99 w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~ 158 (317)
|..+-|+-.-.| ++|+|||.|.-|.+-|..|-+. |+.|+++.|++. +..+...
T Consensus 1774 wm~p~pp~~rtg-~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTG-KRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred CCccCCcccccC-cEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 544446677778 9999999999999999999999 999988887543 2223334
Q ss_pred HCCcee----cCCCcCCHHhhcCcCCEEEEccC
Q 021114 159 AAGFTE----ENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 159 ~~G~~~----~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.|+.- +-+...+++++.++-|.|++++-
T Consensus 1847 ~egi~f~tn~eigk~vs~d~l~~~~daiv~a~g 1879 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKHVSLDELKKENDAIVLATG 1879 (2142)
T ss_pred hhCceEEeeccccccccHHHHhhccCeEEEEeC
Confidence 455421 11223478899999999999863
Done!