RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021114
(317 letters)
>gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 338
Score = 159 bits (404), Expect = 2e-46
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 32/203 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI---GLDFPK 228
E +D+V++L+ D Q + YEK I +K + LG +HGF +I + PK
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGF------NIHFGLIVPPK 122
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 123 DVDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG-- 175
Query: 289 TFA----TTLEQEYKSDIFGERG 307
T A TT ++E ++D+FGE+
Sbjct: 176 TRAGVIETTFKEETETDLFGEQA 198
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 151 bits (384), Expect = 9e-44
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 22/198 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYKSDIFGERG 307
TT ++E +SD+FGE+
Sbjct: 166 LETTFKEETESDLFGEQA 183
>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 165
Score = 142 bits (361), Expect = 6e-42
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
>gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.
Length = 330
Score = 144 bits (367), Expect = 6e-41
Identities = 74/201 (36%), Positives = 111/201 (55%), Gaps = 32/201 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI--GL-DFPK 228
E +D++++L+ D QA+ YE+ I +K + L +HGF +I G P
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGF------NIHFGQIVPPA 121
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G
Sbjct: 122 DVDVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG-- 174
Query: 289 TFA----TTLEQEYKSDIFGE 305
T A TT ++E ++D+FGE
Sbjct: 175 TRAGVIETTFKEETETDLFGE 195
>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional.
Length = 335
Score = 95.2 bits (236), Expect = 2e-22
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYKSDIFGERG 307
TT ++E ++D+FGE+
Sbjct: 179 ETTFQEETETDLFGEQA 195
>gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.
Length = 487
Score = 83.1 bits (206), Expect = 1e-17
Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYKSDIFGE 305
A LE E KSD+ GE
Sbjct: 201 RAGVLESSFVAEVKSDLMGE 220
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal
structure and biogenesis].
Length = 234
Score = 33.4 bits (77), Expect = 0.10
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 135 AEAKSDIVVKVGLRKGSRSFAEA------------RAAGFTEENGTLGDIYETISGSDLV 182
AE + V+K F A +A G + G + GS +
Sbjct: 142 AEEQVQEVLKALRPIIPIRFERAKVAVKIPVEYAGKAYGLLRKFGEIKKEEWQEDGSWIC 201
Query: 183 LLLISDAAQADNYEKI 198
+L I Q + YE +
Sbjct: 202 VLEIPAGNQDEFYELL 217
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B
alpha/beta/delta family [Translation, ribosomal
structure and biogenesis].
Length = 301
Score = 32.0 bits (73), Expect = 0.37
Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 20/164 (12%)
Query: 36 FSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVR 95
TA+ L++++ RG++ A A+E E A ++ + I
Sbjct: 6 VDETAEKLKSMEI---RGASWIAIAAAEA---------LEILASDSQAPTVEELIDAIRE 53
Query: 96 GGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA 155
L K P A + N I + +N R SL +A + + +V A
Sbjct: 54 LSETLVKARPTAVSLGNLIRFVL-RDSSGGDKENRRQSLIKAAQEFIDRVEK-------A 105
Query: 156 EARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
+ R A E GD+ T S S VL ++ AA K+
Sbjct: 106 KERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVI 149
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 32.3 bits (74), Expect = 0.39
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 111 INQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
++ VIG G G + A+ LR+ LA VV V R S A + G +
Sbjct: 3 FGRVVVIGLGLIGGSFAKALRERGLARE----VVAVDRRAKSL--ELAVSLGVIDRGEE- 55
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKP 204
D+ E +SG+D+++L A EK+ + +KP
Sbjct: 56 -DLAEAVSGADVIVL----AVPVLAMEKVLADLKP 85
>gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 146
Score = 29.9 bits (68), Expect = 0.79
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 294 LEQEYKSDIFGERG 307
E+E +SD+FGE+
Sbjct: 1 FEEETESDLFGEQA 14
>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.
Length = 154
Score = 29.5 bits (67), Expect = 1.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 126 QAQNLRDSLAEAKSDIVVKVGL-----RKGSRSFAEARAAGFT 163
QA LRD++ E K VV +G+ K SR FAE FT
Sbjct: 49 QACGLRDNMDELKKAGVVVLGISTDKPEKLSR-FAEKELLNFT 90
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 159
Score = 28.7 bits (65), Expect = 2.5
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 117 IGWGSQGP------AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTE 164
IG GS P AQA+ L +L E D+ V + +R G S EA +A G
Sbjct: 60 IGGGS--PLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDR 115
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 28.7 bits (65), Expect = 3.9
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I IG G G A NL + E V V R ++ AAG T
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHE------VTVYNRTPEKAAELLAAAGATVA----ASPA 52
Query: 174 ETISGSDLVLLLISDAAQADN----YEKIFSCMKPNSIL 208
E + +D+V+ ++ D A + +KP +I+
Sbjct: 53 EAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIV 91
>gnl|CDD|176450 cd08663, DAP_dppA_1, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 266
Score = 28.7 bits (65), Expect = 3.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
G +VR + + G+E+ G+N++ A V
Sbjct: 119 SGGAVRDVRLNGREVGETGLNAAVAGEYGV 148
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 27.2 bits (61), Expect = 4.2
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
IG+IG G+ G A A+ LA A ++V+ R ++ A A G T
Sbjct: 2 IGIIGAGNMGEALARG----LAAAGHEVVI-ANSRNPEKAAALAEELGV---KATAVSNE 53
Query: 174 ETISGSDLVLLLI 186
E + +D+V L +
Sbjct: 54 EAVEEADVVFLAV 66
>gnl|CDD|218344 pfam04951, Peptidase_M55, D-aminopeptidase. Bacillus subtilis DppA
is a binuclear zinc-dependent, D-specific
aminopeptidase. The structure reveals that DppA is a new
example of a 'self-compartmentalising protease', a
family of proteolytic complexes. Proteasomes are the
most extensively studied representatives of this family.
The DppA enzyme is composed of identical 30 kDa subunits
organised in a decamer with 52 point-group symmetry. A
20 A wide channel runs through the complex, giving
access to a central chamber holding the active sites.
The structure shows DppA to be a prototype of a new
family of metalloaminopeptidases characterized by the
SXDXEG key sequence. The only known substrates are
D-ala-D-ala and D-ala-gly-gly.
Length = 265
Score = 28.3 bits (64), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 241 GPSVRRLYVQGKEINGAGINSSFAVHQDV 269
G RR+++ G+E+ AG+N++ A V
Sbjct: 120 GSVFRRVWINGEEVGEAGLNAAVAGEYGV 148
>gnl|CDD|239334 cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown
subfamily; uncharacterized proteins containing a CXXC
motif with similarity to thioredoxin (TRX)-fold arsenic
reductases, ArsC. Proteins containing a redox active
CXXC motif like TRX and glutaredoxin (GRX) function as
protein disulfide oxidoreductases, altering the redox
state of target proteins via the reversible oxidation of
the active site dithiol. ArsC catalyzes the reduction of
arsenate [As(V)] to arsenite [As(III)], using reducing
equivalents derived from glutathione via GRX, through a
single catalytic cysteine.
Length = 111
Score = 27.2 bits (61), Expect = 4.7
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 20/79 (25%)
Query: 19 PSSETLKGAFKHLNLA---FFSSTAKSLRALKTTRGRGSALGAQMASETAL--------- 66
PS E LK + L FF+++ KS R L ++ E AL
Sbjct: 36 PSKEELKKWLEKSGLPLKKFFNTSGKSYRELGL-----KDKLPSLSEEEALELLSSDGML 90
Query: 67 -KTPFLL--DFETSVFKKD 82
K PF++ D FK++
Sbjct: 91 IKRPFVVDDDKVLVGFKEE 109
>gnl|CDD|176451 cd08769, DAP_dppA_2, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 270
Score = 28.0 bits (63), Expect = 6.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 241 GPSVRRLYVQGKEINGAGINSSFA 264
G ++ +++ GKE+N IN+++A
Sbjct: 120 GSTIYNIWINGKEMNETLINAAYA 143
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed.
Length = 333
Score = 28.2 bits (64), Expect = 6.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 117 IGWGS----QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTE 164
IG GS QA+ L+ LA D+ V +G+R + S EA +A G
Sbjct: 66 IGGGSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDR 121
>gnl|CDD|216106 pfam00762, Ferrochelatase, Ferrochelatase.
Length = 311
Score = 27.9 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 125 AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTE 164
AQA+ L+ L E +D+ V + +R G S +A +A G
Sbjct: 71 AQAEALQKRLGERGADVKVYLAMRYGPPSIEDALEELKADGVDR 114
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 27.9 bits (63), Expect = 7.6
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 161 GFTEENGTLGD-----IYETISGSDLVLLLI-SDAAQADNYEKIFSCMK 203
G + LG+ + DL+L ++ +D E I +K
Sbjct: 63 GIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLK 111
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 27.9 bits (63), Expect = 8.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENG 167
G A L + LA A+ +V+ +G GS A A F E G
Sbjct: 190 GAADLARLAELLARAERPLVI-LG---GSGWTEAAVADLRAFAERWG 232
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,131,984
Number of extensions: 1567653
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 29
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)