BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021116
(317 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452620|ref|XP_002281501.1| PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera]
gi|296087748|emb|CBI35004.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/322 (74%), Positives = 267/322 (82%), Gaps = 12/322 (3%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 295
SVTPPYT VDYEVLM QIS SALVG+D+FIVVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 296 AIYGPDWAQKKRKSEKKIPIVT 317
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
>gi|147800028|emb|CAN74970.1| hypothetical protein VITISV_001039 [Vitis vinifera]
Length = 408
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/322 (74%), Positives = 267/322 (82%), Gaps = 12/322 (3%)
Query: 4 VSSSPILSPSSGRLSSN---SSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKK 60
VSSS I+SP + +N SS +LPLFS F K ++K +++ S KS GL +E+KK
Sbjct: 3 VSSSAIVSPLLINIRTNLSSSSPDLPLFSI-FRKTTTRKP-SVVILSCKSEDGLANEEKK 60
Query: 61 ELLKRYGLDPDEFLSEPSPKT-RRRKE----GRGSKLVVSDEKSQEERTTHRLLQVLGGK 115
LL+RYG D +EF+SEPSPKT RRRKE G+G + VS E + RTTH+LLQVLGGK
Sbjct: 61 LLLERYGYDANEFVSEPSPKTTRRRKELQKTGKGKQ--VSPEDPKPPRTTHKLLQVLGGK 118
Query: 116 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS 175
ARRKKLLSPKGMDVRPMMEVVKGAAFDILQ AGGCPASLRPGRWLDLYSGTGSVGIEA+S
Sbjct: 119 ARRKKLLSPKGMDVRPMMEVVKGAAFDILQVAGGCPASLRPGRWLDLYSGTGSVGIEALS 178
Query: 176 RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235
RGCSEVHFVEMDPWVVS+VL PNLEWTGFLDVS IHTVRVE FLERA QFVGKD FDY+
Sbjct: 179 RGCSEVHFVEMDPWVVSDVLRPNLEWTGFLDVSVIHTVRVENFLERAMQFVGKDQSFDYI 238
Query: 236 SVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHL 295
SVTPPYT VDYEVLM QIS SALVG+D+FIVVEYPLR DMLD+CGCLVKI DRRFGRTHL
Sbjct: 239 SVTPPYTEVDYEVLMGQISSSALVGEDTFIVVEYPLRIDMLDSCGCLVKIADRRFGRTHL 298
Query: 296 AIYGPDWAQKKRKSEKKIPIVT 317
AIYGP WAQK+RKSEK P+V
Sbjct: 299 AIYGPKWAQKRRKSEKSFPVVA 320
>gi|224060033|ref|XP_002300031.1| predicted protein [Populus trichocarpa]
gi|222847289|gb|EEE84836.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/321 (72%), Positives = 267/321 (83%), Gaps = 17/321 (5%)
Query: 3 VVSSSPILSP-----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYK-SGTGLTS 56
+SSSPI SP ++ SS+S NL LF+ +KP + + +++ SYK SG GLTS
Sbjct: 2 AISSSPIASPLGININTKLASSSSFPNLALFNLP-SKP-TNRISTIVLSSYKNSGNGLTS 59
Query: 57 EDKKELLKRYGLDPDEFLSEPSP-----KTRRRKE----GRGSKLVVSDEKSQEERTTHR 107
EDKK L ++YGLDP++F S+PS KT+RRKE GRG ++ D + + +RTTHR
Sbjct: 60 EDKKALFEKYGLDPNQFPSQPSSSSPSLKTKRRKEIQNPGRGKQVREEDGEDKPQRTTHR 119
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
LLQVLGGKA+RKKLLSPKGMDVRPMMEVVKG+AFDILQ+AGGCPASLRPGRWLDLYSGTG
Sbjct: 120 LLQVLGGKAKRKKLLSPKGMDVRPMMEVVKGSAFDILQAAGGCPASLRPGRWLDLYSGTG 179
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEAISRGCSEVHFVEMDPWVVSNVL PNLE TGFLDVS IHTVRVE+FLERAEQFVG
Sbjct: 180 SVGIEAISRGCSEVHFVEMDPWVVSNVLQPNLECTGFLDVSVIHTVRVESFLERAEQFVG 239
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+D FD++SVTPPYT VDY +LM QISKS +VG+D+FIVVEYPLRTDMLD+CGCLVKI D
Sbjct: 240 QDSAFDFISVTPPYTQVDYGILMDQISKSPIVGEDTFIVVEYPLRTDMLDSCGCLVKIND 299
Query: 288 RRFGRTHLAIYGPDWAQKKRK 308
RRFGRTHLAIYGP+WAQKKRK
Sbjct: 300 RRFGRTHLAIYGPEWAQKKRK 320
>gi|449519687|ref|XP_004166866.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 313
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 235/284 (82%), Gaps = 5/284 (1%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALV 259
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY VLM Q+SKSALV
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 260 GKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303
G+D+FIVVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
>gi|449461901|ref|XP_004148680.1| PREDICTED: putative rRNA methyltransferase YlbH-like [Cucumis
sativus]
Length = 315
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 235/284 (82%), Gaps = 5/284 (1%)
Query: 22 STNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKT 81
S N PL S +KP + +IV SYKSG +E KK+LL++YGLDP+EFLSEPS
Sbjct: 25 SLNSPL-SNICSKPSAHPSSSIIVCSYKSGNHTVTERKKKLLEQYGLDPNEFLSEPSTNR 83
Query: 82 RR--RKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGA 139
RR RK G+G ++ D K Q R TH+LLQVLGG ARR KLLSPKG+DVRPMMEVVKGA
Sbjct: 84 RREMRKTGKGKQIFPEDPKPQ--RQTHKLLQVLGGSARRMKLLSPKGLDVRPMMEVVKGA 141
Query: 140 AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199
AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNL
Sbjct: 142 AFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAMSRGCSEVHFVEMDPWVVSDVLRPNL 201
Query: 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALV 259
E TGF DVS IHT+RVE F+ERA+Q +G + PFDY+SVTPPYT VDY VLM Q+SKSALV
Sbjct: 202 ESTGFFDVSVIHTIRVENFIERADQLIGTERPFDYISVTPPYTQVDYGVLMGQLSKSALV 261
Query: 260 GKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303
G+D+FIVVEYPLRTDML++CGCL KI DRRFGRTHLAIYGP WA
Sbjct: 262 GEDTFIVVEYPLRTDMLESCGCLTKITDRRFGRTHLAIYGPKWA 305
>gi|297818452|ref|XP_002877109.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
gi|297322947|gb|EFH53368.1| hypothetical protein ARALYDRAFT_905108 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/319 (64%), Positives = 238/319 (74%), Gaps = 17/319 (5%)
Query: 1 MSVVSSSPILSP----SSGRLSSNSSTNLPLFSTSFTKPISQKRYPLIVFSYKSGTGLTS 56
M+V+ SSPI+SP + +S +S + LF S I R ++ SGTGL S
Sbjct: 1 MAVLLSSPIVSPLGINKNLGVSYSSFPQIHLFKVSTPLRI---RKSVVSSRKNSGTGLAS 57
Query: 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE------RTTHRLLQ 110
EDKK LL+RYG D ++ S K RR++E K+ + + EE RTTHRLLQ
Sbjct: 58 EDKKLLLERYGYDANDDFGSQSKKARRKEE----KMSGRNGQQAEEVVVVQPRTTHRLLQ 113
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSGTGSVG
Sbjct: 114 VLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSVG 173
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEAISRGCSE HFVEMDPWVV+NVL PNLE TGF+D S IHT RVE FLERA++ VGKDG
Sbjct: 174 IEAISRGCSEAHFVEMDPWVVTNVLQPNLEHTGFVDTSVIHTARVENFLERADKLVGKDG 233
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FDY+SVTPPY VDYEVLM QI+KS +G+++FI+VEYP RT MLD+CGCL K+ DRRF
Sbjct: 234 AFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKMTDRRF 293
Query: 291 GRTHLAIYGPDWAQKKRKS 309
GRTHLAIYGP WAQK RKS
Sbjct: 294 GRTHLAIYGPKWAQKPRKS 312
>gi|22331389|ref|NP_189487.2| methyltransferase [Arabidopsis thaliana]
gi|9294581|dbj|BAB02862.1| unnamed protein product [Arabidopsis thaliana]
gi|18389226|gb|AAL67056.1| unknown protein [Arabidopsis thaliana]
gi|23296698|gb|AAN13150.1| unknown protein [Arabidopsis thaliana]
gi|332643927|gb|AEE77448.1| methyltransferase [Arabidopsis thaliana]
Length = 314
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/264 (73%), Positives = 214/264 (81%), Gaps = 4/264 (1%)
Query: 49 KSGTGLTSEDKKELLKRYGLDPDEFLSEPSPKTRRRKE---GRGSKLVVSDEKSQEERTT 105
SGTGL SEDKK LL+RYG D ++ S K RR++E GR S+ V + RTT
Sbjct: 52 NSGTGLASEDKKLLLERYGYDANDDFGSQSKKARRKEEKMSGRNSQQVEE-VVVVQPRTT 110
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
HRLLQVL G A+RKKLLS KGMDVRPMMEVVKGAAF ILQ+AGGCP SLRPGRWLDLYSG
Sbjct: 111 HRLLQVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSG 170
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGSVGIEAISRGCSE HFVEMDPWVVSNVL PNLE TGF+D S IHT RVE FLERA++
Sbjct: 171 TGSVGIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKL 230
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
VGKDG FDY+SVTPPY VDYEVLM QI+KS +G+++FI+VEYP RT MLD+CGCL K+
Sbjct: 231 VGKDGVFDYISVTPPYMEVDYEVLMDQIAKSPAIGENTFILVEYPSRTTMLDSCGCLEKM 290
Query: 286 KDRRFGRTHLAIYGPDWAQKKRKS 309
DRRFGRTHLAIYGP WAQK RKS
Sbjct: 291 TDRRFGRTHLAIYGPKWAQKPRKS 314
>gi|356550476|ref|XP_003543613.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Glycine max]
Length = 311
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/308 (68%), Positives = 240/308 (77%), Gaps = 8/308 (2%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSPTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGRWLDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRWLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240
VHFVEMDPWVVS+VL PNLE TGFLD S IHTVRVE F ERAEQFVG GPFDY+SVTPP
Sbjct: 184 VHFVEMDPWVVSDVLRPNLEETGFLDASVIHTVRVEKFFERAEQFVGNSGPFDYISVTPP 243
Query: 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300
YT VDY VLM QIS+S+L+G+++FIVVEYPL+TDMLD+CG LVKI DRRFGRT LAIYGP
Sbjct: 244 YTQVDYGVLMRQISESSLIGENTFIVVEYPLKTDMLDSCGSLVKITDRRFGRTLLAIYGP 303
Query: 301 DWAQKKRK 308
W+QKKR+
Sbjct: 304 TWSQKKRR 311
>gi|255552778|ref|XP_002517432.1| conserved hypothetical protein [Ricinus communis]
gi|223543443|gb|EEF44974.1| conserved hypothetical protein [Ricinus communis]
Length = 268
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/231 (78%), Positives = 204/231 (88%), Gaps = 4/231 (1%)
Query: 80 KTRRRKEGRGS---KLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVV 136
+++R+KEG+ + K VV++E ++ RTTHRLLQV GGKA+RKKLLSP GMDVRPMMEVV
Sbjct: 18 RSKRKKEGKNAGKGKQVVAEE-AKPPRTTHRLLQVFGGKAKRKKLLSPMGMDVRPMMEVV 76
Query: 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196
KG AFDILQ+AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL
Sbjct: 77 KGCAFDILQAAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLQ 136
Query: 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKS 256
PNLE TGFLDVS +HTVRVE FLERAEQF+G + FD++SVTPPY V+Y LM Q+SKS
Sbjct: 137 PNLESTGFLDVSVVHTVRVENFLERAEQFIGSNRTFDFISVTPPYMEVNYGTLMDQVSKS 196
Query: 257 ALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKR 307
ALVG+D+FIVVEYPLRT+MLD CG L+KI DRRFGRTHLAIYGP WAQKKR
Sbjct: 197 ALVGEDTFIVVEYPLRTEMLDACGSLIKIADRRFGRTHLAIYGPKWAQKKR 247
>gi|357496275|ref|XP_003618426.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
gi|355493441|gb|AES74644.1| hypothetical protein MTR_6g009400 [Medicago truncatula]
Length = 325
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/267 (70%), Positives = 212/267 (79%), Gaps = 7/267 (2%)
Query: 51 GTGLTSEDKKELLKRYG--LDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+RYG +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERYGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
QFVG + FDY+SVTPPY VDY VLM IS+S VG D+FIVVEYP +TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRLISESPFVGDDTFIVVEYPSKTDMLESCGPLV 293
Query: 284 KIKDRRFGRTHLAIYGPDWAQKKRKSE 310
KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320
>gi|388508868|gb|AFK42500.1| unknown [Medicago truncatula]
Length = 325
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/267 (70%), Positives = 212/267 (79%), Gaps = 7/267 (2%)
Query: 51 GTGLTSEDKKELLKR--YGLDPDEFLSEPSPKTR----RRKEGRGSKLVVSDE-KSQEER 103
G GL SE+KK LL+R Y +D D++ + S +++ RG K V + + R
Sbjct: 54 GNGLASEEKKILLERDGYDVDADDYFPQSSSPKSKRKKEQQKTRGGKQVQDPPVEPKPPR 113
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
TTH+LLQV+GG ARR KLLSPK MDVRPMMEVVKGAAFDILQ+AGG PASLRPGRWLDLY
Sbjct: 114 TTHKLLQVIGGTARRTKLLSPKSMDVRPMMEVVKGAAFDILQAAGGSPASLRPGRWLDLY 173
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
SGTGSVGIEA+SRGCSEVHFVEMDPWVVS+VL PNLE TGF+D S IHTVRVE F ERAE
Sbjct: 174 SGTGSVGIEALSRGCSEVHFVEMDPWVVSDVLRPNLEVTGFIDDSVIHTVRVEKFFERAE 233
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
QFVG + FDY+SVTPPY VDY VLM IS+S VG D+FIVVEYPL+TDML++CG LV
Sbjct: 234 QFVGNNDTFDYISVTPPYAEVDYVVLMRVISESPFVGDDTFIVVEYPLKTDMLESCGPLV 293
Query: 284 KIKDRRFGRTHLAIYGPDWAQKKRKSE 310
KI DRRFGRT LAIYGP WAQKKRKS+
Sbjct: 294 KITDRRFGRTLLAIYGPTWAQKKRKSK 320
>gi|226529235|ref|NP_001144192.1| uncharacterized protein LOC100277052 [Zea mays]
gi|195638230|gb|ACG38583.1| hypothetical protein [Zea mays]
Length = 318
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/262 (63%), Positives = 207/262 (79%), Gaps = 11/262 (4%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+RYGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLERYGLNPNDFEEDAEDNPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFLDVSHIHMLRVENFLANAEKSQ 235
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G+ FDY+SVTPPY V+Y L+ Q+++S LVGKD FI+VEYPL+TDM ++CG LVK+
Sbjct: 236 GRYPSFDYISVTPPYLEVNYSTLLGQLARSPLVGKDCFILVEYPLKTDMAESCGNLVKVA 295
Query: 287 DRRFGRTHLAIYGPDWAQKKRK 308
DRRFGRT+L IYGP W++KK+K
Sbjct: 296 DRRFGRTNLLIYGPTWSEKKKK 317
>gi|242033039|ref|XP_002463914.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
gi|241917768|gb|EER90912.1| hypothetical protein SORBIDRAFT_01g008850 [Sorghum bicolor]
Length = 320
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/260 (62%), Positives = 200/260 (76%), Gaps = 11/260 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPK-----------TRRRKEGRGSKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + + + + ++ VV+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAGEDPRQEKRDRRRRRQSGRGEQTAEAVVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+ GK
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEKSQGKYP 238
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FDY+SVTPPY V+Y L+AQ+++S LVGKD FI+VEYPL+TDM ++CG L+KI DRRF
Sbjct: 239 SFDYISVTPPYLEVNYSTLLAQLARSPLVGKDCFILVEYPLKTDMAESCGNLIKIADRRF 298
Query: 291 GRTHLAIYGPDWAQKKRKSE 310
GRT+L IYGP W++KKR+ +
Sbjct: 299 GRTNLLIYGPTWSEKKRRRD 318
>gi|357116543|ref|XP_003560040.1| PREDICTED: putative rRNA methyltransferase ylbH-like [Brachypodium
distachyon]
Length = 312
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 167/260 (64%), Positives = 206/260 (79%), Gaps = 9/260 (3%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRL 108
+++ L+RYGL+PD++ +EP P+ RR+E R + V+ K+ E R TH++
Sbjct: 50 ERRRFLERYGLNPDDYEEDAEPDPREERRRERRMRRSGRGEDEAAVAPVKAVERRETHKM 109
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGS
Sbjct: 110 LQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGS 169
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRGCSEVHFVEMDPWVVS VL PNLE TGFLD S IH +RVETFL+ AE+ G+
Sbjct: 170 VGIEAMSRGCSEVHFVEMDPWVVSEVLKPNLECTGFLDASDIHMLRVETFLDNAEKSKGR 229
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FDY+SVTPPY V+Y L+ Q++ S LVG+D FI+VEYPL+TDM ++CG L+KI DR
Sbjct: 230 YPSFDYISVTPPYVEVNYSTLLDQLASSPLVGEDCFILVEYPLKTDMAESCGKLIKIADR 289
Query: 289 RFGRTHLAIYGPDWAQKKRK 308
+FGRT+L IYGP W++KK+K
Sbjct: 290 KFGRTNLLIYGPTWSEKKKK 309
>gi|222625753|gb|EEE59885.1| hypothetical protein OsJ_12486 [Oryza sativa Japonica Group]
Length = 313
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 195/256 (76%), Gaps = 8/256 (3%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 58 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 117
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 118 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 177
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ GK FD
Sbjct: 178 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSGKYPSFD 237
Query: 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293
Y+SVTPPY V+Y L+ Q+++S LVG+D FI+VEYPL+TDM ++CG L+K+ DRRFGRT
Sbjct: 238 YISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKVADRRFGRT 297
Query: 294 HLAIYGPDWAQKKRKS 309
+L IYGP WA+KKR+S
Sbjct: 298 NLLIYGPTWAEKKRRS 313
>gi|257209025|emb|CBB36503.1| Arabidopsis protein targeted to chloroplast protein At3g28460
[Saccharum hybrid cultivar R570]
Length = 327
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 163/256 (63%), Positives = 195/256 (76%), Gaps = 11/256 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRR--------KEGRG---SKLVVSDEKSQEERTTHRLLQ 110
L+RYGL+PD+F + R + GRG ++ V+ K+ E R TH++LQ
Sbjct: 59 FLERYGLNPDDFEEDAEEDPREERRDRRRRRQSGRGEQTAEAAVTPSKAAEPRETHKMLQ 118
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
VLGGK RR+KLLSP+ +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVG
Sbjct: 119 VLGGKVRRRKLLSPRDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGTGSVG 178
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+ GK
Sbjct: 179 IEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSHIHMLRVEKFLANAEKSQGKYP 238
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FDY+SVTPPY V+Y L+AQ+++S LVGKD FI+VEYPL+TDM ++CG L+KI DRRF
Sbjct: 239 SFDYISVTPPYLEVNYSTLLAQLARSPLVGKDCFILVEYPLKTDMAESCGNLIKIADRRF 298
Query: 291 GRTHLAIYGPDWAQKK 306
GRT+L IYGP W K
Sbjct: 299 GRTNLLIYGPTWCNDK 314
>gi|115455185|ref|NP_001051193.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|108710953|gb|ABF98748.1| expressed protein [Oryza sativa Japonica Group]
gi|108710954|gb|ABF98749.1| expressed protein [Oryza sativa Japonica Group]
gi|113549664|dbj|BAF13107.1| Os03g0736400 [Oryza sativa Japonica Group]
gi|215697269|dbj|BAG91263.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740723|dbj|BAG97379.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193713|gb|EEC76140.1| hypothetical protein OsI_13427 [Oryza sativa Indica Group]
Length = 311
Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 195/256 (76%), Gaps = 8/256 (3%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ GK FD
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSGKYPSFD 235
Query: 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293
Y+SVTPPY V+Y L+ Q+++S LVG+D FI+VEYPL+TDM ++CG L+K+ DRRFGRT
Sbjct: 236 YISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKVADRRFGRT 295
Query: 294 HLAIYGPDWAQKKRKS 309
+L IYGP WA+KKR+S
Sbjct: 296 NLLIYGPTWAEKKRRS 311
>gi|326511379|dbj|BAJ87703.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534084|dbj|BAJ89392.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534138|dbj|BAJ89419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 314
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/255 (61%), Positives = 198/255 (77%), Gaps = 9/255 (3%)
Query: 62 LLKRYGLDPDEFL--SEPSPKTRRRKEGRG-------SKLVVSDEKSQEERTTHRLLQVL 112
L+RYGL+PD+F +EP P+ RR+E R + V+ + E R TH++LQ+L
Sbjct: 55 FLERYGLNPDDFEEDAEPDPREERRRERRMRRSGRGEEEAAVAPARPVERRETHKMLQIL 114
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASL+PG WLDLYSGTGSVGIE
Sbjct: 115 AGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLKPGLWLDLYSGTGSVGIE 174
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232
A+SRGCSE HFVE+DPWV+S VL PNL+ TGFLD S IH +RVE FL+ AE+ G+ F
Sbjct: 175 AMSRGCSEAHFVELDPWVISEVLKPNLDCTGFLDTSHIHMLRVENFLDNAEKSKGRYPSF 234
Query: 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGR 292
DY+SVTPPY V+Y L+ Q+++S LVG+D FI+VEYPL+TDM ++CG L+KI DR+FGR
Sbjct: 235 DYISVTPPYVEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMPESCGKLIKIADRKFGR 294
Query: 293 THLAIYGPDWAQKKR 307
T+L IYGP W++KK+
Sbjct: 295 TNLLIYGPTWSEKKK 309
>gi|29788862|gb|AAP03408.1| hypothetical protein [Oryza sativa Japonica Group]
gi|37999998|gb|AAR07085.1| unknown protein [Oryza sativa Japonica Group]
Length = 318
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/264 (60%), Positives = 195/264 (73%), Gaps = 17/264 (6%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEV--------HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+SRGCSEV HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+
Sbjct: 176 MSRGCSEVFPRTEVKAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEK- 234
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K FDY+SVTPPY V+Y L+ Q+++S LVG+D FI+VEYPL+TDM ++CG L+K+
Sbjct: 235 SSKYPSFDYISVTPPYLEVNYSTLLDQLARSPLVGEDCFILVEYPLKTDMAESCGSLIKV 294
Query: 286 KDRRFGRTHLAIYGPDWAQKKRKS 309
DRRFGRT+L IYGP WA+KKR+S
Sbjct: 295 ADRRFGRTNLLIYGPTWAEKKRRS 318
>gi|168036734|ref|XP_001770861.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677920|gb|EDQ64385.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 245
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 126/206 (61%), Positives = 156/206 (75%), Gaps = 4/206 (1%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
R TH+LL+V+ GK +KL SP ++VRPMME+V+GA F+ILQ+ GG A L PGRWLDL
Sbjct: 38 RLTHKLLRVMAGKVGGRKLASPADLNVRPMMEIVRGAVFNILQALGGGAAQLPPGRWLDL 97
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER- 221
YSGTGSVGIEA+SRGC +FVEMDPWV+ VL PNL TGF D + +HT VET L++
Sbjct: 98 YSGTGSVGIEALSRGCEMAYFVEMDPWVIDEVLNPNLAVTGFQDQAVVHTSPVETLLDQV 157
Query: 222 AEQFVG-KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDT 278
AE G G FDY+SVTPPY AV + LM QIS S LV +D+ IVVEYP+++ +M +T
Sbjct: 158 AEHGAGLLGGQFDYISVTPPYEAVVFSKLMQQISDSPLVKEDTCIVVEYPIKSKREMPET 217
Query: 279 CGCLVKIKDRRFGRTHLAIYGPDWAQ 304
CG LVKI+DRR+GRTH+AIYGP WA+
Sbjct: 218 CGPLVKIRDRRYGRTHVAIYGPAWAK 243
>gi|302790748|ref|XP_002977141.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
gi|300155117|gb|EFJ21750.1| hypothetical protein SELMODRAFT_57071 [Selaginella moellendorffii]
Length = 207
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 3/202 (1%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 7 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 66
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNLE T + + S +H ++VET+LE
Sbjct: 67 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLEATNYTEQSVVHMLKVETYLE 126
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDT 278
+ + K FDY+SVTPPY AV Y LM Q+S S LVG ++++VEYPL++ +M +
Sbjct: 127 K-QATNPKAEVFDYISVTPPYEAVHYPTLMEQLSTSPLVGDYTYVIVEYPLKSKQEMPEA 185
Query: 279 CGCLVKIKDRRFGRTHLAIYGP 300
CG L KI DRR+GRTHLA+YGP
Sbjct: 186 CGPLAKIVDRRYGRTHLAVYGP 207
>gi|302820944|ref|XP_002992137.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
gi|300140063|gb|EFJ06792.1| hypothetical protein SELMODRAFT_134814 [Selaginella moellendorffii]
Length = 225
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 119/203 (58%), Positives = 152/203 (74%), Gaps = 3/203 (1%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL 160
E RT H+LL+V+GGK KKLLSP VRPMMEVV+GA F++LQ+ GG L PG+WL
Sbjct: 23 EPRTVHKLLRVMGGKNNGKKLLSPNDSSVRPMMEVVRGAVFNMLQARGGYTGGLPPGKWL 82
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLYSGTGSVGIEA+SRGC HF+EMDPWV+S VL PNL+ T + + S +H ++VET+LE
Sbjct: 83 DLYSGTGSVGIEALSRGCLAAHFIEMDPWVISKVLKPNLDATNYTEQSVVHMLKVETYLE 142
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDT 278
+ + K FDY+SVTPPY AV Y LM Q+S S LVG ++++VEYPL++ +M +
Sbjct: 143 K-QATNPKAEVFDYISVTPPYEAVHYPTLMEQLSTSPLVGDYTYVIVEYPLKSKDEMPEA 201
Query: 279 CGCLVKIKDRRFGRTHLAIYGPD 301
CG L KI DRR+GRTHLA+YGP+
Sbjct: 202 CGPLAKIVDRRYGRTHLAVYGPN 224
>gi|413933138|gb|AFW67689.1| hypothetical protein ZEAMMB73_980003, partial [Zea mays]
Length = 255
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/200 (63%), Positives = 154/200 (77%), Gaps = 11/200 (5%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRGCSE HFVEMDPWV+S VL PNLE TGF+DVS IH +RVE FL AE+
Sbjct: 176 GSVGIEAMSRGCSEAHFVEMDPWVISEVLKPNLECTGFIDVSQIHMLRVEKFLANAEKSH 235
Query: 227 GKDGPFDYMSVTPPYTAVDY 246
GK FDY+SVTPPY V+Y
Sbjct: 236 GKYPSFDYISVTPPYLEVNY 255
>gi|108710955|gb|ABF98750.1| expressed protein [Oryza sativa Japonica Group]
Length = 238
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 128/174 (73%), Gaps = 8/174 (4%)
Query: 62 LLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEE--------RTTHRLLQVLG 113
L+RYGL+PD+F + + R + ++++ R TH++LQVLG
Sbjct: 56 FLERYGLNPDDFEDDAEAEPREERRRDRRNRRSGRGEAEDAPAKAAAEPRETHKMLQVLG 115
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGTGSVGIEA
Sbjct: 116 GKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGFPASLRPGRWLDLYSGTGSVGIEA 175
Query: 174 ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+SRGCSE HFVEMDPWVVS VL PNLE TGFLDVS IH +RVE FL AE+ G
Sbjct: 176 MSRGCSEAHFVEMDPWVVSEVLKPNLECTGFLDVSHIHMIRVENFLANAEKSSG 229
>gi|255640797|gb|ACU20682.1| unknown [Glycine max]
Length = 199
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 141/195 (72%), Gaps = 8/195 (4%)
Query: 9 ILSPSSGRLSSNSSTNL--PLFSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRY 66
+L P+ L N+ T+ P F S PL V KSG GL SEDKK LL++Y
Sbjct: 4 LLPPTFSPLLLNTKTDFGSPPFPLLTLSSSSTTSSPLFVSYTKSGNGLASEDKKILLEKY 63
Query: 67 G--LDPDEFLSEPSPKTRRRKEG---RGSKLVVSD-EKSQEERTTHRLLQVLGGKARRKK 120
G +D DE+ S+ S K++RRKE RG K V E + R TH+LLQVLGG ARR K
Sbjct: 64 GYDIDADEYFSQSSSKSKRRKEQPRRRGGKQVQDPPEDPKPPRVTHKLLQVLGGTARRVK 123
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
LLSPKGMDVRPMMEVVKGAAFDILQ+AGGCPA+LRPGR LDLYSGTGSVGIEA+SRGCS+
Sbjct: 124 LLSPKGMDVRPMMEVVKGAAFDILQAAGGCPAALRPGRCLDLYSGTGSVGIEALSRGCSQ 183
Query: 181 VHFVEMDPWVVSNVL 195
VHFVEMDPWVVS+VL
Sbjct: 184 VHFVEMDPWVVSDVL 198
>gi|307109177|gb|EFN57415.1| hypothetical protein CHLNCDRAFT_142855 [Chlorella variabilis]
Length = 656
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 133/202 (65%), Gaps = 8/202 (3%)
Query: 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLY 163
TH+ L+V+ G A ++L SP+G RPMME+V+ A F ++ S G P SL P RWLDLY
Sbjct: 422 THQRLRVIAGAAAGRRLRSPQGDQTRPMMEMVRNAVFSMVMSLYGSPTSLPPTTRWLDLY 481
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTG+VGIEA+SRG + HFVEM PWVVS L+PNLE + +HT + E FL RA+
Sbjct: 482 AGTGAVGIEALSRGVGQCHFVEMSPWVVSKCLMPNLEACEMESAAVVHTGKAEDFLRRAQ 541
Query: 224 Q---FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML--DT 278
Q F G G FD++SV PPY VDYE + + S L+ +S +VVEYP + L
Sbjct: 542 QLSRFAG--GAFDFLSVCPPYELVDYEEIFDLLHASPLLHGESIVVVEYPKKLASLVRQR 599
Query: 279 CGCLVKIKDRRFGRTHLAIYGP 300
G L K++DRR+GRT++AIYGP
Sbjct: 600 LGPLEKLRDRRYGRTYMAIYGP 621
>gi|384246870|gb|EIE20358.1| hypothetical protein COCSUDRAFT_18562 [Coccomyxa subellipsoidea
C-169]
Length = 226
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 135/209 (64%), Gaps = 8/209 (3%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRP 156
++ E TH+ L+++GG K++ S +G RPMME V+ A FD++ S AGG P+ L
Sbjct: 17 RTAAEHKTHKRLRLVGGALAGKRITSGRGETTRPMMEKVRKAVFDMMMSFAGGNPSFLEG 76
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
RWLDL++GTGSVG+EA+SRG + F+E+DPWV++NVL PN+E G D + IH+ + E
Sbjct: 77 TRWLDLFAGTGSVGLEALSRGAAHCQFIELDPWVINNVLSPNIESCGASDSTVIHSGKAE 136
Query: 217 TFLERAE---QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
FL+RA F K PFDY+SV PPY V YE L +S S L+ S + VEYP
Sbjct: 137 AFLQRARDATHFSSK--PFDYISVCPPYLLVSYEELFDLLSTSPLLHSGSVVFVEYPQSA 194
Query: 274 DML--DTCGCLVKIKDRRFGRTHLAIYGP 300
+ DT G L ++DR++GRT +AIYGP
Sbjct: 195 SKIIPDTLGPLALLRDRKYGRTQVAIYGP 223
>gi|145346079|ref|XP_001417522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577749|gb|ABO95815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 468
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 228 RKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPDSRW 287
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LD++ GTG++GIE+ISRG E HFVEMDPWVV+NV NL G ++ HT V+ F+
Sbjct: 288 LDMFCGTGAIGIESISRGVVEAHFVEMDPWVVNNVTNKNLNSLGLTKQTTTHTASVQAFM 347
Query: 220 ERAEQFV-GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+ + G G FD++S PPY V Y L+ Q+ +SALV + ++VEY
Sbjct: 348 NQHHKNARGVGGAFDFISFCPPYEKVSYPELLLQLDESALVKDSTILLVEY 398
>gi|412986233|emb|CCO17433.1| predicted protein [Bathycoccus prasinos]
Length = 547
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 115/175 (65%), Gaps = 4/175 (2%)
Query: 101 EERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PG 157
EE+ TH+ LQ++ G+ R+ +L+P G++ RPMM VV+GA FD++ S G ++++
Sbjct: 320 EEKKTHKRLQIVAGRHSRRVVLTPSGLNTRPMMGVVRGATFDMILSLVGSRSNVQFPENS 379
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217
RWLDL++GTG++G+EA+SRGC + HFVEMD W V NV N++ G ++ H VET
Sbjct: 380 RWLDLFAGTGAIGLEALSRGCVDAHFVEMDDWTVKNVTRVNIKTLGEEKNATAHCASVET 439
Query: 218 FLER-AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271
FL+R ++ G G F+++S PPY + Y L+ +I S LV D+ ++VEY +
Sbjct: 440 FLQRHSKNTSGVGGAFNFVSFCPPYEKISYPDLLLEIDSSPLVSDDAIVLVEYAI 494
>gi|293336610|ref|NP_001168658.1| uncharacterized protein LOC100382446 [Zea mays]
gi|223949969|gb|ACN29068.1| unknown [Zea mays]
gi|413933137|gb|AFW67688.1| hypothetical protein ZEAMMB73_980003 [Zea mays]
Length = 200
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 105/135 (77%), Gaps = 11/135 (8%)
Query: 58 DKKELLKRYGLDPDEFL--SEPSPKTRRR------KEGRG---SKLVVSDEKSQEERTTH 106
+++ L+ YGL+P++F +E +P+ R+ + GRG ++ V+ K +E R TH
Sbjct: 56 ERRRFLESYGLNPNDFEEDAEENPREERKDRRRRRQSGRGEQTAEAAVTPAKVEEPRETH 115
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++LQVLGGK RR+KLLSPK +VRPMMEVV+GAAFDILQSAGG PASLRPGRWLDLYSGT
Sbjct: 116 KMLQVLGGKVRRRKLLSPKDRNVRPMMEVVRGAAFDILQSAGGSPASLRPGRWLDLYSGT 175
Query: 167 GSVGIEAISRGCSEV 181
GSVGIEA+SRGCSEV
Sbjct: 176 GSVGIEAMSRGCSEV 190
>gi|308803004|ref|XP_003078815.1| unnamed protein product [Ostreococcus tauri]
gi|116057268|emb|CAL51695.1| unnamed protein product [Ostreococcus tauri]
Length = 472
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 110/171 (64%), Gaps = 4/171 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
+ TH+ + ++ GK R+KLLSP G+D RPMM +V+GA FD++ + G ++++ RW
Sbjct: 226 KKTHKRMTIVAGKYARRKLLSPSGLDTRPMMSMVRGATFDMMLNFLGSRSNVQFPPNSRW 285
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL+ GTG++G+E+ISRGC E HFVEMDPWV++N N+ G ++ H V+ F+
Sbjct: 286 LDLFCGTGAIGLESISRGCVEAHFVEMDPWVINNCTNKNIATLGVQKQTTTHCASVQAFM 345
Query: 220 ERAEQFV-GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+ + G G FD++S PPY V Y L+ Q+ +SAL+ + ++VEY
Sbjct: 346 SQNHKSARGVGGAFDFISFCPPYYKVSYPELLLQLDESALIKDSTVLIVEY 396
>gi|303282743|ref|XP_003060663.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458134|gb|EEH55432.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 120/212 (56%), Gaps = 22/212 (10%)
Query: 80 KTRRRKEGRGSKLVVSDEKSQEE--RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
K RR E + + +E+ Q E R TH+ + ++ G R+KLLSP G+D RPMM +V+
Sbjct: 243 KLLRRLESEKAAVASFNERKQTEQARKTHKRMTIVAGTYARRKLLSPSGLDTRPMMGMVR 302
Query: 138 GAAFDILQSAGGCPASLR----PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193
GA FD++ + G ++++ RWLDL++GTG++G+EA+SRGC E HFVEMDPWV +N
Sbjct: 303 GATFDMVMALIGSASNVQFPDPSSRWLDLFAGTGAIGLEAMSRGCVESHFVEMDPWVTNN 362
Query: 194 VLIPNLEWTGF-----------LDVSSIH-----TVRVETFLERAEQFVGKDGPFDYMSV 237
VL N++ G ++ SIH VRV G FD++S
Sbjct: 363 VLEKNIKSLGLTRSDARVHTSSVEARSIHWSPYDPVRVAFLASHKRSAKAAGGAFDFVSF 422
Query: 238 TPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
PPY V Y L+ ++ S L+ + + +VVEY
Sbjct: 423 CPPYYKVSYPELLLELDASPLLAEHTVLVVEY 454
>gi|255085040|ref|XP_002504951.1| predicted protein [Micromonas sp. RCC299]
gi|226520220|gb|ACO66209.1| predicted protein [Micromonas sp. RCC299]
Length = 121
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR---PGRW 159
R TH+ L ++ G R+KLLSP G+D RPMM +V+GA FD++ S G ++ RW
Sbjct: 1 RRTHKRLTIVAGTLSRRKLLSPSGLDTRPMMGMVRGATFDMIMSLIGIRSNTAFPPDSRW 60
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LDL++GTG++GIEAISRGC+E HFVEMDPWVV+NV NL+ G + +++HT VE FL
Sbjct: 61 LDLFAGTGAIGIEAISRGCAESHFVEMDPWVVNNVTRKNLQSLGVVSKTTVHTASVEAFL 120
>gi|387219991|gb|AFJ69704.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422292740|gb|EKU20042.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
gi|422293042|gb|EKU20343.1| n6-adenine-specific methylase, partial [Nannochloropsis gaditana
CCMP526]
Length = 363
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 110/194 (56%), Gaps = 9/194 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG AR K+L SP+ + +RPMM V+ A F L S + RP R +DL+ G GS
Sbjct: 134 LRIIGGSARGKRLDSPE-VHLRPMMSKVREALFSTLFSFDLFGS--RPPRVMDLFCGAGS 190
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-IHTVRVETFLERAEQFVG 227
VG+EA+SRG E FV+M V NL+ F V I R E L R + +G
Sbjct: 191 VGLEALSRGAGEAVFVDMASECCECVE-RNLKLCNFDAVKGKIVRARAEEVL-RQPKRLG 248
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC---GCLVK 284
G FD +S+TPPY V Y L+ + +S V +DS IV+EYP+ L G L+
Sbjct: 249 VIGTFDLISITPPYEEVVYADLIRDVMESPAVAEDSLIVIEYPVELGSLPFNIGKGRLLG 308
Query: 285 IKDRRFGRTHLAIY 298
+++RR+GRT LAIY
Sbjct: 309 LRNRRYGRTVLAIY 322
>gi|452819936|gb|EME26986.1| putative N6-adenine-specific methylase [Galdieria sulphuraria]
Length = 329
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 10/196 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
L V G + ++LL+P + +RPMM V+ A F +L LRP R LD+++GTG
Sbjct: 97 LYVNAGSVKGRRLLNPP-VYIRPMMSKVRSALFCMLTDM----KLLRPEYRILDIFAGTG 151
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+S+ + FV+ P + V NLE F D E F++ +F
Sbjct: 152 AVGIEALSQNVGKAVFVDSSPDCCATVR-ENLERCRFSDRGDAFCSTYEDFVDNPGRFQV 210
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC--LVKI 285
K G F+ +++TPPY +DY LM+ I+ S+L+G S +VVEYP+ ++ LV +
Sbjct: 211 K-GTFELVTLTPPYEEIDYNTLMSTIATSSLIGPGSVVVVEYPIELGVMPPVIMERLVGL 269
Query: 286 KDRRFGRTHLAIYGPD 301
++RR+GRT L +YG D
Sbjct: 270 RNRRYGRTVLGLYGVD 285
>gi|299116748|emb|CBN74861.1| putative S-adenosylmethionine-dependent methyltransferase
[Ectocarpus siliculosus]
Length = 363
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 8/215 (3%)
Query: 87 GRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS 146
GR K+ E+ + L+V GG A+ ++L SP + +RPMM VK A F L
Sbjct: 129 GRPGKVRPQGEEREVSINNAARLKVAGGIAKGRRLESPD-VFLRPMMAKVKEALFSTLMG 187
Query: 147 AGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206
G R+LDL+SG+GSVGIEA+SRG FV+ +V + N GF D
Sbjct: 188 FG--VFETEDARFLDLFSGSGSVGIEALSRGAGHATFVDFAKDCC-DVCLRNANLCGFSD 244
Query: 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266
+ V L ++ G D PFD ++VTPPY V Y L+ +S S LV +D+ +V
Sbjct: 245 QAKAVKGDVMDVLYNPRRY-GLDAPFDVITVTPPYEEVVYTELVKALSVSDLVAQDTLVV 303
Query: 267 VEYPLRTDMLDTC---GCLVKIKDRRFGRTHLAIY 298
+EYP+ + G +V +++RR+GRT + ++
Sbjct: 304 IEYPVELGCMPHAIGDGTMVGLRNRRYGRTVVGVW 338
>gi|221632131|ref|YP_002521352.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
gi|221157241|gb|ACM06368.1| N6-adenine-specific methylase [Thermomicrobium roseum DSM 5159]
Length = 195
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G+ RPM + ++ A F +L S G +RP R LDLY+G+G+
Sbjct: 1 MRVIGGSARGRRLKAPRGLRTRPMADKIREALFSMLDSLG-----IRPQRVLDLYAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG V FV+ + V+ NL TGF D ++H V+ FL R +
Sbjct: 56 IGIETLSRGARWVDFVDRSAAACA-VIRDNLTATGFADRGAVHCTTVQAFLRRPPR---- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
P+D++ + PPY M +++S V + +VV + R M + L +++DR
Sbjct: 111 -EPYDFVIMDPPYADPTIHETMLAVARSPHVRDGTILVVGHSPRVPMPERLDGLEQLRDR 169
Query: 289 RFGRTHLAIY 298
G + +AIY
Sbjct: 170 CHGDSCVAIY 179
>gi|390562348|ref|ZP_10244573.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173074|emb|CCF83875.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 194
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 105/190 (55%), Gaps = 12/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RPM + ++ A F +L S G ++P R LDLY+G+GS
Sbjct: 1 MRVISGTARGHRLKAPRGMTTRPMADKIREAVFSVLASEG-----IQPVRVLDLYAGSGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE + + V+ NL T F +++H VE+F+ R +
Sbjct: 56 VGIEALSRGAEWADFVEHNAAACA-VIRDNLASTRFTGRAAVHQATVESFISRIRE---- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
P+D++ + PPY + ++ +++S V + +V+ + R + D G L ++ R
Sbjct: 111 --PYDFIIMDPPYASPTIRDVIEALARSPAVEHGTILVIGHSPRVALPDRIGPLELLRQR 168
Query: 289 RFGRTHLAIY 298
G + AIY
Sbjct: 169 CHGDSCFAIY 178
>gi|302037877|ref|YP_003798199.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
gi|300605941|emb|CBK42274.1| putative Ribosomal RNA small subunit methyltransferase D
[Candidatus Nitrospira defluvii]
Length = 190
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V+ G R ++LL P+G +RP + VK A F IL ++ G R LDLY+GT
Sbjct: 1 MRVIAGLHRGRRLLGPRGQAIRPTSDRVKEALFSILGERTTGA--------RVLDLYAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG + V FVE D + ++ NLE G +++ +V F RA Q+
Sbjct: 53 GSIGIEALSRGAAHVTFVEADRQAL-RLINSNLEQCGLQQSANVCACQVSQFFRRATQW- 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
GP+D + PPY + MAQ + + D+ +++E+ + ++ T G L ++K
Sbjct: 111 --SGPYDIVFCDPPYQLTPELITMAQEWNAGWLADDAVVIIEHGKKAEIPQTLGLLSQVK 168
Query: 287 DRRFGRTHL 295
+G T L
Sbjct: 169 RYDYGDTAL 177
>gi|309789638|ref|ZP_07684219.1| methyltransferase [Oscillochloris trichoides DG-6]
gi|308228374|gb|EFO82021.1| methyltransferase [Oscillochloris trichoides DG6]
Length = 185
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ L +PKGM RPM++ VKG+ F IL+ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGKAKGHTLKAPKGMGTRPMLDKVKGSLFSILEGYG----RIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG S FVE V S ++ NL T + +H + V+ F++
Sbjct: 56 LGIECLSRGASAADFVEQSAHVCS-IINENLRHTKLDALGKVHCLPVDRFIQSQRGV--- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G +D + + PPY E + + L + +VV + R + D L +IK R
Sbjct: 112 -GHYDIIIMDPPYADPQIEQTITNVGSFQLGHAGTLLVVGHSARVTLADAYPHLTRIKFR 170
Query: 289 RFGRTHLAIYGPD 301
R G +IY D
Sbjct: 171 RLGDACFSIYEMD 183
>gi|163847955|ref|YP_001635999.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525835|ref|YP_002570306.1| methyltransferase [Chloroflexus sp. Y-400-fl]
gi|163669244|gb|ABY35610.1| methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222449714|gb|ACM53980.1| methyltransferase [Chloroflexus sp. Y-400-fl]
Length = 192
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G S+ LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYGPIRGSV-----LDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE + V S ++ NL T F I+ + V+ FL R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCS-IIADNLRHTRFEQQGHIYHMPVDRFLHRQRGI--- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G +D + + PPY E M ++ S + + S ++V + R ++ D L +IK R
Sbjct: 112 -GRYDIIIMDPPYADPTIEATMQLVASSGVGKEGSLLIVGHSPRVELDDDYPGLHRIKFR 170
Query: 289 RFGRTHLAIY 298
R G + +IY
Sbjct: 171 RLGDSCFSIY 180
>gi|449017917|dbj|BAM81319.1| similar to N6-adenine-specific methylase [Cyanidioschyzon merolae
strain 10D]
Length = 354
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 15/201 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG AR ++L SP + VRP M V+ A F IL+ P S +P R+LDL+ G G+
Sbjct: 141 LRITGGTARGRRLESPP-VYVRPAMAQVREACFSILRELQILP-SRQPVRFLDLFCGAGT 198
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHTVRVETFLERAEQFVG 227
+G EA+SRG S FV+ P + V N+ G + ++ + VE +L A
Sbjct: 199 MGFEALSRGASSAVFVDRSPECCACVRR-NMSKLGVGEGIALVRETTVEEYLATA----- 252
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC--GCLVKI 285
DG +++TPPY + Y+ L+ +S+SA++ + + +++EYP L L+ +
Sbjct: 253 PDGVLQIVALTPPYEEISYDELLRTLSQSAVISERTVVMLEYPYELGSLPPVIENRLIGM 312
Query: 286 KDRRFGRTHLAIYG----PDW 302
++RR+GRT L +Y P+W
Sbjct: 313 RNRRYGRTVLGMYACQPDPNW 333
>gi|82753598|ref|XP_727743.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483734|gb|EAA19308.1| similar to unknown proteins [Plasmodium yoelii yoelii]
Length = 455
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 65 RYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSP 124
+YG+ ++ P ++ + + K+ +E + ++L + G + KKL SP
Sbjct: 192 KYGIPEEKLNIRRLPNSKIKSKYNFCKIKTYNETTNINYKKKKILTINEGILKNKKLYSP 251
Query: 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184
+ RPMM VK + F+IL G ++ LD +SG+G++GIE ISRG V FV
Sbjct: 252 -DIYTRPMMSKVKESLFNILVHLG--VFNINNFNVLDAFSGSGNLGIECISRGLENVTFV 308
Query: 185 EMDPWVVSNVLIPNLEWTGFLDVSS-IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243
++ + NL+ ++++ I V L+ +F D ++ TPPY
Sbjct: 309 DL-SLNSCRTICENLKLCNIQNLNNKIIRSDVLELLKNPYKFDILD-KYNLAFFTPPYEQ 366
Query: 244 VDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVKIKDRRFGRTHLAIY 298
+ Y L+ ISKS L D+ I +EYP DML L+ +++R+FGRT+ AIY
Sbjct: 367 IVYSELVHSISKSELFDNDALIFIEYPKEIDMLPQKVDNLIGLRNRKFGRTYFAIY 422
>gi|428672075|gb|EKX72990.1| conserved hypothetical protein [Babesia equi]
Length = 396
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 9/225 (4%)
Query: 78 SPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVK 137
S K + R + R +++ + T ++++ GG R +KL P + +RPMM VK
Sbjct: 131 SKKVKSRYKFRPTRMQGIKLHDESSFNTVSMMKINGGSIRGRKLCCPP-VYIRPMMSRVK 189
Query: 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197
GA F LQ G R +DL+ GTGSVG+EA+S G + FV++ I
Sbjct: 190 GALFSSLQHIGMFSPD-RECSVIDLFCGTGSVGLEALSYGATNCTFVDISMECCKATSI- 247
Query: 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKS 256
N GF D S + +R + ++ + FD + PPY V Y L+ +I+ S
Sbjct: 248 NAGHCGFKDKSRV--LRADAMESITSPWLHSINQKFDLLIACPPYQEVIYSELIEKIANS 305
Query: 257 ALVGKDSFIVVEYPLRTDMLDTC---GCLVKIKDRRFGRTHLAIY 298
++ K++ +V+EYP + L G L+ IK+RR+GRT LA+Y
Sbjct: 306 TILNKNAAVVIEYPKEINFLPQNVGDGKLLGIKNRRYGRTILAVY 350
>gi|269926754|ref|YP_003323377.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
gi|269790414|gb|ACZ42555.1| methyltransferase [Thermobaculum terrenum ATCC BAA-798]
Length = 189
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 110/202 (54%), Gaps = 13/202 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R L SP+ + RPM + ++ A F I+ P GR LDLY+GTG+
Sbjct: 1 MRVTGGELRGVTLKSPRSLSTRPMTDRLRLALFSII-----APMEQPRGRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ + + V+ NLE T ++ + +H V++FL E G+
Sbjct: 56 LGIEALSRGADFVDFVDQNSSACA-VIRANLEQTKLVNRAKVHKRSVKSFLASYE---GE 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + + PPY D E +++ IS+ ++ D +V+ + R + + G L + R
Sbjct: 112 --PFDLIFMDPPYADADIEEVLSFISRKGMLSADGLLVLGHTSRRNFAERIGALELLIKR 169
Query: 289 RFGRTHLAIYGPDWAQKKRKSE 310
G + ++IY A++ R ++
Sbjct: 170 CHGDSCISIY--TVAERDRNTD 189
>gi|226325134|ref|ZP_03800652.1| hypothetical protein COPCOM_02926 [Coprococcus comes ATCC 27758]
gi|225206482|gb|EEG88836.1| RNA methyltransferase, RsmD family [Coprococcus comes ATCC 27758]
Length = 202
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 19/208 (9%)
Query: 93 VVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA 152
VVSD +QE ++V+ GKARR L++ KGM+ RP + K F+++ + G C
Sbjct: 7 VVSDIINQENDK----MRVIAGKARRIPLVTVKGMETRPTTDRTKETLFNMI-AHGLCDC 61
Query: 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212
+ +LDL+SG+G++GIEAISRG + FVE +P + ++ NL+ T D + +
Sbjct: 62 T-----FLDLFSGSGAIGIEAISRGVKKAVFVENNPNAIQCIM-ENLKKTQLADQAKVIR 115
Query: 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272
V + L R + G++ FDY+ + PPY + + ++ ++KS L+ KD+ I+VE L
Sbjct: 116 EDVFSALRRLD---GRE-KFDYVFMDPPYNHMLEKEVLTYLAKSDLLEKDALIIVEASLA 171
Query: 273 TDM--LDTCGCLVKIKDRRFGRTHLAIY 298
TD L+ G L+ IK +++ +T++ ++
Sbjct: 172 TDFSYLEELGFLM-IKQKKY-KTNMHVF 197
>gi|219849855|ref|YP_002464288.1| methyltransferase [Chloroflexus aggregans DSM 9485]
gi|219544114|gb|ACL25852.1| methyltransferase [Chloroflexus aggregans DSM 9485]
Length = 192
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L +PKG+ RPM++ VK A F +L+ G +R G LDLY+GTGS
Sbjct: 1 MRVITGKAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GVVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE + V + ++ NL T F I+ + V+ FL R
Sbjct: 56 LGIECLSRGADSADFVERNAHVCT-IIADNLRHTHFEQQGRIYQMPVDRFLHRQRGVR-- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY E + +++S + + S +++ + R ++ DT L +IK R
Sbjct: 113 --HYDIIIMDPPYADPAIEATIQLVAQSDVGKEGSLLIIGHSPRVELADTYPGLHRIKYR 170
Query: 289 RFGRTHLAIY 298
R G + +IY
Sbjct: 171 RLGDSCFSIY 180
>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
Length = 189
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 9/190 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L +P+G RP + VK A F +L SAG L R LDL++G+GS
Sbjct: 1 MRVIAGKARGMRLTAPRGTTTRPTSDRVKEALFSLLDSAG----RLDGMRVLDLFAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V F+E D + ++ + NL TGF D + + LER V +
Sbjct: 57 LGIEALSRGAEQVTFIEKDRHALESLRL-NLGHTGFSDRAEVLPFDCLQALER---LVRQ 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY A ++ ++ +++ SAL+ D +V E RT + + G + R
Sbjct: 113 KVCFDLILLDPPYQAGLHQKVI-ELAGSALLAADGLVVAEAAARTPLPERIGPCNRSDRR 171
Query: 289 RFGRTHLAIY 298
+G T L +Y
Sbjct: 172 IYGDTALELY 181
>gi|266623325|ref|ZP_06116260.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
gi|288864902|gb|EFC97200.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
13479]
Length = 187
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 12/174 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G+D RP + +K F+IL P S +LDL+SG+G
Sbjct: 1 MRVIAGKARRLLLKTIDGLDTRPTTDRIKETLFNILNP--DLPGS----TFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F+EM+P + + NL+ T F D S + V T L+R E GK
Sbjct: 55 IGIEALSRGADRAVFIEMNPK-AAECIRENLQTTKFTDESIVMNCDVLTGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCG 280
D FD++ + PPY ++ +S S L+ +D+ ++VE L+T D L++ G
Sbjct: 111 DYVFDFVFMDPPYGKELERQVLTFLSASPLISEDTLMIVEADLKTGFDYLESLG 164
>gi|428182160|gb|EKX51022.1| hypothetical protein GUITHDRAFT_151135 [Guillardia theta CCMP2712]
Length = 323
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTG 167
++V GG A+ +KL P+ + +RPMM VK A F IL LR LD ++G G
Sbjct: 111 IRVAGGTAKGRKLNRPE-VYLRPMMGKVKEALFSILTEFD----VLRDDAIALDTFAGCG 165
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+SRG + FV+ N + NLE F D + + E + Q +
Sbjct: 166 SVGIEALSRGVGKAVFVDYSKEA-CNTIRGNLEVCEFEDRGMVVCSKAEAIYDDPVQVLA 224
Query: 228 KDGP--FDYMSVTPPYTAVDYEVLMAQISKSA-LVGKDSFIVVEYPLRTDMLD--TCGCL 282
K G FD +++TPPY VDY L+ +I+KS L+ +VVEYP+ L L
Sbjct: 225 KMGGKGFDLLTMTPPYEEVDYGDLLGRITKSEHLMNDGCIVVVEYPIELGSLPPVVGNRL 284
Query: 283 VKIKDRRFGRTHLAIY 298
V +++R++GRT LAIY
Sbjct: 285 VGMRNRKYGRTMLAIY 300
>gi|298243748|ref|ZP_06967555.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
gi|297556802|gb|EFH90666.1| methyltransferase [Ktedonobacter racemifer DSM 44963]
Length = 194
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+A+ K+L SPK +D RP+++ VK A FDIL ++ R+LDL+ G G+
Sbjct: 1 MRVVTGEAKGKRLKSPKTIDTRPILDRVKTALFDILS------GEVQGTRFLDLFGGVGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQFV 226
VGIEA+SRG + F+E++P V +L NL+ TG ++ TVR + FL+
Sbjct: 55 VGIEALSRGAAHATFLELNPQVF-RILRENLQLTGL--INRAETVRGDAFKFLQAGAAPG 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE-YPLRTDMLD--TCGCLV 283
P+D + V PP + + S LV D ++V+ +P + TC L
Sbjct: 112 AAPKPYDIIYVAPPQYQEMAARALEMLDHSPLVPDDGLVIVQIHPKERPGVAAVTCQRLT 171
Query: 284 KIKDRRFGRTHLAIY 298
+ +RR+G T L Y
Sbjct: 172 LVDERRYGSTLLMFY 186
>gi|283798042|ref|ZP_06347195.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|291074344|gb|EFE11708.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
gi|295091819|emb|CBK77926.1| RNA methyltransferase, RsmD family [Clostridium cf. saccharolyticum
K10]
Length = 190
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+GMD RP + +K F+++Q L R+LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKAPEGMDTRPTTDRIKETLFNMIQD------ELYHCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE P V V+ NL+ T D + + V+T L R E+ +
Sbjct: 55 IGIEALSRGGELAVFVENSPKAVE-VIRSNLKTTHLEDRAMVMNCDVQTALNRLEE---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD--MLDTCG-CLVKI 285
FD++ + PPY + + ++ ++S S L+ +++ I+ E TD + + G C+ ++
Sbjct: 111 GMSFDFIFMDPPYNHLYEKQVLERLSGSPLIKENTLIIAEASRETDTSYIPSLGFCISRV 170
Query: 286 KDRRFGRTHLAI 297
K+ + + HL I
Sbjct: 171 KEYKTNK-HLFI 181
>gi|433655103|ref|YP_007298811.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293292|gb|AGB19114.1| RNA methyltransferase, RsmD family [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 194
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNIIG------ADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +FVE V +N+ N + LD + V L+ F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYIN-DNIKLLDSTDNAKVLHMDVLDALYYFSKN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY Y + +IS+ L+ +I+VE+ + D G L K++ R
Sbjct: 111 DIKFDIIYIDPPYYKNLYVEPLNKISEYKLLDSYGYIIVEHHKNDILNDKYGNLQKVRVR 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGETVLTFY 180
>gi|71032457|ref|XP_765870.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352827|gb|EAN33587.1| hypothetical protein TP01_0343 [Theileria parva]
Length = 335
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 43/290 (14%)
Query: 48 YKSGTGLT----SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEER 103
Y+S + L ++D E D DE + E PK + K KL +S ++ +
Sbjct: 27 YRSNSRLNVFIDADDNDEFF-----DHDEVIEEKPPKFMKNKLNHAQKLHISRPINKSVK 81
Query: 104 TTHRL--------------------LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDI 143
T ++L L++ GG R +KL P + VRP M VK + F+
Sbjct: 82 TRYKLQQFPKKQGVTKDGAYKFCSNLRICGGSIRGRKLCIP-PIYVRPAMAKVKISVFNY 140
Query: 144 LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203
L S + +DLY GTGS+G+E++S G S+ FV+ + V + N E
Sbjct: 141 LNSLSMFSID-KETNVIDLYCGTGSLGLESLSYGASKCTFVDTSLKCLKAVSL-NSEKCN 198
Query: 204 FLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD 262
+ D + +R ++ L + + FD M V+PPY V Y ++ IS ++ KD
Sbjct: 199 YEDKCRL--IRCDSMELISSPHLYNINEKFDLMFVSPPYEEVVYSEILEYISNCNILNKD 256
Query: 263 SFIVVEYP-----LRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKR 307
+ ++VEYP L + D L +K++++GRT +AIY + + K+
Sbjct: 257 AIVIVEYPKELLALAHTINDK---LFGLKNKKYGRTVIAIYVYNPSSNKQ 303
>gi|269837913|ref|YP_003320141.1| hypothetical protein Sthe_1886 [Sphaerobacter thermophilus DSM
20745]
gi|269787176|gb|ACZ39319.1| Protein of unknown function methylase putative [Sphaerobacter
thermophilus DSM 20745]
Length = 194
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 12/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L P+ RPM + V+ A F +L + G +RP R LDLY+G+G
Sbjct: 1 MRVIAGTMKGHQLKVPRTRRTRPMSQRVREALFMVLHTLG-----VRPRRVLDLYAGSGG 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +P + V+ NL T F D +++H V++FL R +
Sbjct: 56 IGIEALSRGAEWCDFVEQNPAACA-VIRDNLASTRFTDRAAVHQTTVQSFLSRPLE---- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
P+D + + PPY M ++++S V + + + + + R ++ + G L +I+ R
Sbjct: 111 --PYDLVVMDPPYADPHILQTMQRVAESGAVAEGTILALGHWPRLELPEEIGPLRQIRRR 168
Query: 289 RFGRTHLAIY 298
G + +IY
Sbjct: 169 CHGDSCFSIY 178
>gi|148656730|ref|YP_001276935.1| putative methyltransferase [Roseiflexus sp. RS-1]
gi|148568840|gb|ABQ90985.1| putative methyltransferase [Roseiflexus sp. RS-1]
Length = 205
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +L +PKG+ RPM++ VK A F +L+ G +R GR LDLY+GTG+
Sbjct: 1 MRVITGTAKGHRLKAPKGLGTRPMLDRVKEALFSVLEGYG----PIR-GRVLDLYAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG S FVE V ++ NLE T D + + + VE FL R G
Sbjct: 56 LGIECLSRGASWADFVEHKAHVC-QIIRENLEHTRLADRARVFQMPVERFLHRQ----GP 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY E + + + L+ +VV + R ++ D + K R
Sbjct: 111 HEKYDIIIMDPPYADPAIEATICAVHDADLLKDTGLLVVGHSPRVELDDRYQRFHRRKFR 170
Query: 289 RFGRTHLAIY 298
R G + +IY
Sbjct: 171 RLGDSCFSIY 180
>gi|134299931|ref|YP_001113427.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052631|gb|ABO50602.1| putative methyltransferase [Desulfotomaculum reducens MI-1]
Length = 184
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL SPKGM RP + V+ A F+IL S P S R+LDL+SGTG+
Sbjct: 1 MRIIAGTARGRKLKSPKGMTTRPTSDRVREALFNILSSY--VPGS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE--TFLERAEQFV 226
V IEA+SRG + VE D + ++ NL LD + + TV V T + R
Sbjct: 55 VAIEALSRGAEKATLVERDKN-TARIIYDNLRMCNVLDKAEVLTVDVSQATLIMRR---- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K FD + + PPY +EV + +I + L+ D +VVE + D G L
Sbjct: 110 -KKETFDLIFIDPPYKK-GFEVPTLEKIQECHLLSSDGILVVESDQKDLPPDLVGNLTAT 167
Query: 286 KDRRFGRTHLAIY 298
+ R+G T L Y
Sbjct: 168 RRERYGDTALTFY 180
>gi|397616529|gb|EJK64018.1| hypothetical protein THAOC_15292 [Thalassiosira oceanica]
Length = 317
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 34/219 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGA------AFDILQSAGGCPASLRPGRWLDL 162
L+VLGG R +KL SP + +RPMM VK A +F GG P + R LD+
Sbjct: 83 LRVLGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGFYDGVGGQPCTTR---HLDI 138
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHT-------- 212
+SG+GSVG+E++SRG FV+M N+E GF + I T
Sbjct: 139 FSGSGSVGLESLSRGAKHCTFVDMSSDCCG-ACERNIERCGFDGWNEGGIGTEVGDSGEP 197
Query: 213 ----VRVETFLE-RAEQFVGKD--GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFI 265
V + + R + VG D +D +++ PPY + Y L+ ++ S LV +D+ I
Sbjct: 198 VANVVCTDAYRALREPETVGIDPEAKYDLVTLCPPYEEIVYAELLDAVANSKLVKEDTVI 257
Query: 266 VVEYPLRTDML------DTCGCLVKIKDRRFGRTHLAIY 298
+VEYP+ L + G L+ +++R++GRT +A+Y
Sbjct: 258 LVEYPVELGCLPHVIGREDGGVLIGVRNRKYGRTVIAMY 296
>gi|304316956|ref|YP_003852101.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778458|gb|ADL69017.1| methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 194
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KL P G +RP ++VK + F+I+ A + R+LDL+SGTGS
Sbjct: 1 MRVISGKAKGRKLKCPPGKAIRPTSDMVKESLFNII------GADIYNSRFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +FVE V +N+ N + LD + V L+ F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYIN-DNIKLLDSTDNAKVLHMDVLDALYYFSKN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY Y + +IS+ L+ +I+VE+ + D L K++ R
Sbjct: 111 DIKFDIIYIDPPYYKNLYVEPLNKISEYKLLDSYGYIIVEHHKNDILNDKYENLQKVRVR 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGETVLTFY 180
>gi|154483594|ref|ZP_02026042.1| hypothetical protein EUBVEN_01298 [Eubacterium ventriosum ATCC
27560]
gi|149735504|gb|EDM51390.1| RNA methyltransferase, RsmD family [Eubacterium ventriosum ATCC
27560]
Length = 185
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR +L + GM RP + +K F+++ + P ++ +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLQLKTIDGMGTRPTTDRIKETLFNMINN--DMPQAV----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ +FVE + V + NL +T D + + + VE+ L+ E V
Sbjct: 55 IGIEALSRGASKAYFVESNKKAVQ-CIKDNLNFTKLQDDAVVMAMPVESALKDLEHKV-- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
FD++ + PPY + + ++ +SKS L+ K S I+VE L TD
Sbjct: 112 --KFDFIFMDPPYDKLYEKDVLIFLSKSDLINKSSRIIVEASLDTDF 156
>gi|296133586|ref|YP_003640833.1| methyltransferase [Thermincola potens JR]
gi|296032164|gb|ADG82932.1| methyltransferase [Thermincola potens JR]
Length = 185
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL +P+GM+ RP + VK + F+IL + +LDL++GTGS
Sbjct: 1 MRVITGIAKGRKLKAPRGMNTRPTTDRVKESLFNILGE------KVINSVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG SE F+E D V V++ NL TG D ++ V +RA +GK
Sbjct: 55 IGIEALSRGASEAVFIEKDVRVYK-VILENLAHTGLADFGEVYRQDV----QRALSLLGK 109
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + PPY + I + L+ D +VVE + + L K +
Sbjct: 110 RQKKFDIIFADPPYLQYFERSTLENICRFDLIKPDGIVVVESSTLDQLPERVLRLQKYRT 169
Query: 288 RRFGRTHLAIYG 299
++G L YG
Sbjct: 170 EKYGNIALNFYG 181
>gi|310659144|ref|YP_003936865.1| putative methyltransferase [[Clostridium] sticklandii]
gi|308825922|emb|CBH21960.1| putative methyltransferase [[Clostridium] sticklandii]
Length = 188
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 9/190 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KKLLSP+ +RP ++ VK + F+I+ +R +LDL+ G+G+
Sbjct: 1 MRVIAGKARGKKLLSPQTDKIRPTLDRVKESLFNII------GFEIRDCSFLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISR +V+FV+ D + + N+E F D + ++ + F E K
Sbjct: 55 IGIEAISRDADKVYFVDRDSSSIE-LTQKNIESCKF-DSTKYKILKADAF-EALNSLANK 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
DY+ + PPY +D + ++ +IS+ L+ ++ E + + + G L K +++
Sbjct: 112 GIKLDYIFMDPPYGFLDIDKIIEKISQLDLLSSGGLLIAETDIDDSISENIGKLNKTREK 171
Query: 289 RFGRTHLAIY 298
++ T L+ Y
Sbjct: 172 KYSITKLSFY 181
>gi|221058393|ref|XP_002259842.1| methylase [Plasmodium knowlesi strain H]
gi|193809915|emb|CAQ41109.1| methylase, putative [Plasmodium knowlesi strain H]
Length = 400
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 11/210 (5%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++L + GK + +++ SP RPMM VK + F IL G S LD++SG+
Sbjct: 179 KILSIHEGKFKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--TMNVLDVFSGS 235
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQ 224
G++GIE ISR + V FV++ + NL+ +++S +R + L+ +
Sbjct: 236 GNLGIECISRDIAHVTFVDLSLNSCKTIY-ENLKLCN-INLSYNQIIRADAMELLKNPLK 293
Query: 225 F-VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCL 282
F +G+ F TPPY + Y L+ IS S L +DS + +EYP +ML +
Sbjct: 294 FHIGE--KFHLAFFTPPYEQIVYSELIQNISSSELFDRDSLVFIEYPKEIEMLPQRVYNM 351
Query: 283 VKIKDRRFGRTHLAIYGPDWAQKKRKSEKK 312
+ +++R+FGRT+ A+Y + + K +E+K
Sbjct: 352 IGLRNRKFGRTYFALYVLNSSGKYLSAERK 381
>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
Length = 189
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+A+R +L + KG D+RP E VK A F+IL S P S R+LDL++GTG
Sbjct: 1 MRVIGGEAKRCRLATLKGKDLRPTSERVKEALFNILASQ--VPGS----RFLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE DP V ++ NLE TG + + ++ V + L K
Sbjct: 55 VGIEALSRGAKFAVFVERDPRAV-KLIRENLERTGLSNRARVYGRDVLSLL---PYLARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + ++ +++ L+ + +VVE R D LV +
Sbjct: 111 KERFDLVYIDPPYQKGYEKKVLQLLAELDLLKTEGLVVVESSARELPPDKVLRLVLKRRE 170
Query: 289 RFGRTHLAIYG 299
R+G T L+ Y
Sbjct: 171 RYGDTALSFYA 181
>gi|409911782|ref|YP_006890247.1| DNA methyltransferase [Geobacter sulfurreducens KN400]
gi|298505356|gb|ADI84079.1| DNA methyltransferase, putative [Geobacter sulfurreducens KN400]
Length = 187
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLERAEQF 225
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I + FLER
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDFLER---- 112
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ F + + PPY + ++ +++ S L+ +++ IVVE + + D L +
Sbjct: 113 --EGASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLV 170
Query: 286 KDRRFGRTHLAIY 298
R +G T L+ +
Sbjct: 171 DRRIYGDTALSFF 183
>gi|392374452|ref|YP_003206285.1| methyltransferase [Candidatus Methylomirabilis oxyfera]
gi|258592145|emb|CBE68450.1| putative methyltransferase [Candidatus Methylomirabilis oxyfera]
Length = 185
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+GG AR +++L+P+G RP + ++ F++L A GR +LDLY+GTG
Sbjct: 1 MRVIGGLARGRRILAPRGRMTRPTSDYLREVLFNLL-------AQQVEGRTFLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+SRG + FVE D ++ +L NL+ +GF D + + ++ V +L RA V
Sbjct: 54 AVGIEALSRGAATAVFVEHDRSALT-MLYRNLDTSGFRDRAQVVSMEVLRYLRRA---VC 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PPY D E ++ I+ L+ ++E + + L I++
Sbjct: 110 GSQRFDLIFLDPPYLHADAEAVIGLIASMELLAPTGTAILERSTKVAPIHVPDGLALIRE 169
Query: 288 RRFGRTHLAIY 298
R G L +Y
Sbjct: 170 VRHGDAALQLY 180
>gi|325661177|ref|ZP_08149804.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472684|gb|EGC75895.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
4_1_37FAA]
Length = 189
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMIS------PYLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL+ T + + T V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMTTDVMTALRRMEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
G FDY+ + PPY + + ++ +++S L+ +DS I+VE TD
Sbjct: 110 SGTFDYIFMDPPYNKLLEKQVLEYLAESKLIDEDSVIIVEASKSTDF 156
>gi|39996346|ref|NP_952297.1| DNA methyltransferase [Geobacter sulfurreducens PCA]
gi|39983226|gb|AAR34620.1| DNA methyltransferase, putative [Geobacter sulfurreducens PCA]
Length = 187
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 104/190 (54%), Gaps = 7/190 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + +K A F+IL S R LDL++GTG+
Sbjct: 1 MRVVGGSARGRRLAAPRGNRVRPTADRIKEALFNILHSG---MEGFEEVRVLDLFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ V+ V+ NL+ GF D + I T ++ E+ +
Sbjct: 58 LGIEALSRGCSEAVFVDSHRESVA-VIRRNLDELGFGDRARIIARDALTAIDYLER---E 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY + ++ +++ S L+ +++ IVVE + + D L + R
Sbjct: 114 GASFRLVMLDPPYRLGLADKVLGRLAGSPLIAEETIIVVESAVDEVLPDLMEPLHLVDRR 173
Query: 289 RFGRTHLAIY 298
+G T L+ +
Sbjct: 174 IYGDTALSFF 183
>gi|403386867|ref|ZP_10928924.1| methyltransferase [Clostridium sp. JC122]
Length = 185
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 12/197 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+ + LL P+GM RP ++ +K + F+I+Q +R +DL+SGTGS
Sbjct: 1 MRVIGGIAKGRNLLPPEGMGTRPTLDRIKESIFNIIQH------RVRGAVTVDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG + + +EM S +L N+E F D+ FL EQF +
Sbjct: 55 LGIEAASRGAEKSYLIEMGDSSYS-LLKKNVENLKFQDLCVTLNGDCYKFL---EQFYKE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY + ISK L+ KD IV + + + + R
Sbjct: 111 DKKFDIIFIDPPYAKEMIPPAVELISKYKLLQKDGLIVTKIDTSEVIYEGNDEITLFDKR 170
Query: 289 RFGRTHLAIYGPDWAQK 305
++G T + Y D+ +K
Sbjct: 171 KYGNTTVCFY--DYKEK 185
>gi|302670818|ref|YP_003830778.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
gi|302395291|gb|ADL34196.1| hypothetical protein bpr_I1459 [Butyrivibrio proteoclasticus B316]
Length = 183
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR KL++P+G D RP + +K F+++Q P S+ ++DLY+G+G
Sbjct: 1 MRVIAGSARRLKLVTPEGNDTRPTQDRIKETLFNMIQLQ--VPGSV----FIDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F++ + ++ NL+ T F DVS++ V L +
Sbjct: 55 IGIEALSRGAKKAYFID-NAMSSYKCIMTNLKTTHFEDVSTVLKQDVVIGLRNIHE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D + + PPY YE ++Q+S V +++ I++E PL D
Sbjct: 110 -EEADIIFIDPPYHEDLYERTLSQLSSLNFVTENTMIIIESPLEMDF 155
>gi|407474117|ref|YP_006788517.1| RsmD family RNA methyltransferase [Clostridium acidurici 9a]
gi|407050625|gb|AFS78670.1| RNA methyltransferase, RsmD family [Clostridium acidurici 9a]
Length = 187
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 12/198 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L SPKG++ RP + VK + F+IL LDL+SG+G
Sbjct: 1 MRVITGIARGHSLKSPKGLNTRPTSDKVKESIFNILGYID------EKSTVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIE +SRG +FV+ D + ++ NL T L+ S ++ V RA + +G
Sbjct: 55 IGIEFLSRGAETCYFVDSDINSIK-IIKENLSNTRLLEKSLVYKNNVN----RAIKILGS 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FDY+ + PPY + IS+ L+ K+ I+VE+ + ++ + VK
Sbjct: 110 KKIRFDYIFLDPPYAKEHVMSTLENISEENLLNKEGKIIVEHETKLELPNQSHGFVKADY 169
Query: 288 RRFGRTHLAIYGPDWAQK 305
R++G T ++ Y + Q
Sbjct: 170 RKYGDTSVSFYTYEEVQN 187
>gi|296005514|ref|XP_002809077.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
gi|225632021|emb|CAX64358.1| N6-adenine-specific methylase, putative [Plasmodium falciparum 3D7]
Length = 561
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---GCPASLRPGRWLDLY 163
++L +L G + K+L SP RPMM VK + F+IL G ++ LD++
Sbjct: 339 KILSILEGTLKNKRLYSPDTY-TRPMMSKVKESIFNILTHLNILNGYNINV-----LDVF 392
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLER 221
+G+G++GIE ISR V FV++ V NL D + +R + L+
Sbjct: 393 TGSGNLGIECISRDVKNVTFVDLSLNSCRTVF-ENLRLCNIYDTNK-KIIRADAMELLQN 450
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCG 280
+F + ++ TPPY + Y L+ IS S L +D I +EYP ++L G
Sbjct: 451 PYKFNVHE-KYNLGFFTPPYEQIIYSDLIHNISNSKLFEEDGLIFIEYPKEINLLPKKVG 509
Query: 281 CLVKIKDRRFGRTHLAIY 298
L+ +++R+FGRT+ +Y
Sbjct: 510 NLIGLRNRKFGRTYYTLY 527
>gi|323702702|ref|ZP_08114363.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333923274|ref|YP_004496854.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532365|gb|EGB22243.1| methyltransferase [Desulfotomaculum nigrificans DSM 574]
gi|333748835|gb|AEF93942.1| methyltransferase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 187
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP + V+ A F+IL A P S ++LDL+SGTG+
Sbjct: 1 MRIIAGSARGRTLKSPKGMSTRPTTDRVREALFNIL--AHQVPDS----KFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + VE D + +++ NL+ GF + + + + V +RA Q +GK
Sbjct: 55 VAIEALSRGAARAVLVEKD-RSAATIILNNLKLCGFSEKAQVLVLDV----QRAIQTLGK 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LDTCGCLVKIK 286
FD + + PPY M I + L+ +VVE ++D+ D G L +
Sbjct: 110 KKEVFDLIFIDPPYKHGHEVPTMEGIERQGLLSPHGTLVVESN-KSDLPPDLVGRLAAYR 168
Query: 287 DRRFGRTHLAIYGPD 301
++G T L Y D
Sbjct: 169 REKYGDTALTFYRYD 183
>gi|223992627|ref|XP_002285997.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977312|gb|EED95638.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 240
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG---------GCPASLRPGRW 159
L++LGG R +KL SP + +RPMM VK A + S G G R
Sbjct: 16 LRILGGSVRGRKLESPT-VYLRPMMGKVKEAVYSTFTSFGLYENNQNIGGGGTGTCSTRH 74
Query: 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
LD++SG+GSVG+E++SRG FV+M N+ G ++ + V + F
Sbjct: 75 LDIFSGSGSVGLESLSRGARHCTFVDMSNDCCG-ACERNIVRCGGEPIAKV--VCTDAFR 131
Query: 220 E-RAEQFVGKD--GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276
R + VG D +D +++ PPY + Y L+ ++ S LV +D+ I++EYP+ L
Sbjct: 132 ALRQPETVGIDPSCKYDLVTLCPPYEEIVYADLLDAVANSELVTEDTVILIEYPVELGCL 191
Query: 277 ------DTCGCLVKIKDRRFGRTHLAIY--GPDWAQKKRKS 309
+ G L+ I++R++GRT +A+Y P A++ +S
Sbjct: 192 PHAIGREDGGVLIGIRNRKYGRTVIAMYIVNPTGARETAES 232
>gi|333897205|ref|YP_004471079.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112470|gb|AEF17407.1| methyltransferase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 192
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ A + +LDL+SGTGS
Sbjct: 1 MRVISGMAKGRKLKCPPGRAIRPTSDMVKESLFNIIS------ADIYDSIFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG + +FVE V +N+ + N++ G +D + I + L + F
Sbjct: 55 IGIEALSRGANICYFVEK---VYNNIKYINDNVKLLGSIDSAVILHMDA---LHALDYFN 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD++ + PPY Y + +IS+ L+ D + +VE+ + + G L K +
Sbjct: 109 KNNIKFDFIYIDPPYYNNLYVEPLNKISEYELLNTDGYAIVEHHKNDFLEERYGSLQKFR 168
Query: 287 DRRFGRTHLAIY 298
+++G T L +
Sbjct: 169 MKKYGETILTFF 180
>gi|289422316|ref|ZP_06424166.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
gi|289157261|gb|EFD05876.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
653-L]
Length = 186
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V+F + DP + V N+ T F + TV + +L+ K
Sbjct: 55 LGIEALSRGASHVYFCDKDPKSIG-VTKSNISKTKF---EARSTVILGDYLKAISNISSK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D + + PPY + ++ +I ++ +D +VVE+ + + + G + IK++
Sbjct: 111 KEKMDIIFIDPPYYKGLFGEVLKEIVDQGILEEDGILVVEHDYQVAIEEVDGLNI-IKNK 169
Query: 289 RFGRTHLAIYG 299
++G+T + IYG
Sbjct: 170 KYGKTAVTIYG 180
>gi|94967148|ref|YP_589196.1| hypothetical protein Acid345_0117 [Candidatus Koribacter versatilis
Ellin345]
gi|94549198|gb|ABF39122.1| conserved hypothetical protein 95 [Candidatus Koribacter versatilis
Ellin345]
Length = 186
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P+GMDVRP + ++ F++L S L RW+DL++GTG+
Sbjct: 1 MRIISGKFRSRSLKTPQGMDVRPSSDRLRETLFNVLASG----YQLEDSRWIDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG ++FVE P ++ + N++ D + + T L + E G
Sbjct: 57 VGLEALSRGAGYIYFVEKAPK-IARITQENVKSLDAQDQAEVLTSDANAGLRQLE---GI 112
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D P DY+ + PPY Y ++ +S S L+ + ++ E+ D D G L + +
Sbjct: 113 D-PVDYVFLDPPYREEGAYLGVLRILSDSPLLKPSAIVIAEHTKHFDPGDGVGALQRYRS 171
Query: 288 RRFGRTHLAIY 298
+ G L+ Y
Sbjct: 172 LKQGDAVLSFY 182
>gi|331085068|ref|ZP_08334155.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408768|gb|EGG88233.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 189
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ L R+LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMISP------YLYDCRFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL+ T + + V T L R E
Sbjct: 55 IGIEALSRGAGEAVFVEQNPKAMA-CIKENLKKTKLEERAVTMATDVMTALRRMEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
G FDY+ + PPY + + ++ +++S L+ +DS I++E TD
Sbjct: 110 SGTFDYIFMDPPYNKLLEKQVLEYLAESKLIDEDSVIIIEASKSTDF 156
>gi|118580607|ref|YP_901857.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
gi|118503317|gb|ABK99799.1| putative methyltransferase [Pelobacter propionicus DSM 2379]
Length = 187
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+GM RP + V+ A F I+QS L R LD+ +GTG
Sbjct: 1 MRVIAGSARGTRLAAPRGMRTRPTADRVREALFSIIQS----RYELDGARVLDMCAGTGG 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
+GIEA+SRG S FVE D + L NL T + +++ +E L RA + G
Sbjct: 57 LGIEALSRGASTCCFVEKDREAL-KCLRQNLLATRCAERATL----LEMDLLRALPLLAG 111
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ F + PPY + Y +M +S L+ + + E R + + GCLV+
Sbjct: 112 RGSRFSIIFFDPPYASELYTPVMRSLSSLELLEPEGLFIAESAARAILPEREGCLVRSDR 171
Query: 288 RRFGRTHLAIY 298
R +G T LA+Y
Sbjct: 172 RVYGDTALALY 182
>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 189
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
T ++V+ GKARR L + G+D RP + +K F+ILQ L R+LDL+S
Sbjct: 3 TESEMRVIAGKARRLNLKTIPGIDTRPTTDRIKETLFNILQP------ELLECRFLDLFS 56
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+G +GIEA+SRG S FVE +P + + NL +T + + + V L+
Sbjct: 57 GSGGIGIEALSRGASYAVFVEKNPKAAA-CIRENLAFTKLAEDGKLLNMDV---LQALRS 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
GK G FD + + PPY ++ + S + K++ I+VE L+TD
Sbjct: 113 LEGK-GVFDIIFMDPPYNNELERQVLEYLKDSTVADKNTLIIVEADLQTDF 162
>gi|422338361|ref|ZP_16419321.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355372277|gb|EHG19618.1| RNA methyltransferase, RsmD family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 182
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEAIK-YIIENIDNLGFTDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|68006113|ref|XP_670251.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56485326|emb|CAI03073.1| conserved hypothetical protein [Plasmodium berghei]
Length = 208
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD-- 187
RPMM VK + F+IL G + +D +SG+G++GIE ISRG S V FV++
Sbjct: 9 RPMMSKVKESLFNILVHLG--VFNFNNINVIDAFSGSGNLGIECISRGLSNVTFVDLSLN 66
Query: 188 --PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245
+ N+ + N++ + I V L+ +F D ++ TPPY +
Sbjct: 67 SCRTICENLKLCNIQHVN----NKIIRSDVLELLKNPYKFDVLD-KYNLGFFTPPYEQII 121
Query: 246 YEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVKIKDRRFGRTHLAIY 298
Y L+ ISKS L D+ I +EYP +ML L+ +++R+FGRT+ AIY
Sbjct: 122 YSELVHSISKSELFDNDALIFIEYPKEINMLPQKVDNLIGLRNRKFGRTYFAIY 175
>gi|269121048|ref|YP_003309225.1| methyltransferase [Sebaldella termitidis ATCC 33386]
gi|268614926|gb|ACZ09294.1| methyltransferase [Sebaldella termitidis ATCC 33386]
Length = 183
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + KKL + +G + RP +E VK A F I+ + +LDLY+GTGS
Sbjct: 1 MRVVAGSVKNKKLKTKEGRETRPTLERVKEAIFSIISD------EITDSSFLDLYAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG +E D + ++I N+ GF ++S + +R L+R +
Sbjct: 55 IAIEALSRGARRAILIEQDKEALR-IIIENINNCGFENISRAYKNDVIRALEILQRKGEL 113
Query: 226 VGKDGPFDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY + ++ L +IS+ ++ K+ I+ E+ + D G LVK
Sbjct: 114 ------FDIIFLDPPYKENISFDTL-KKISECKVLKKEGIIISEHGNYEKLPDEIGDLVK 166
Query: 285 IKDRRFGRTHLAIY 298
+R + + L+ Y
Sbjct: 167 YDERDYNKKILSFY 180
>gi|289765717|ref|ZP_06525095.1| methyltransferase [Fusobacterium sp. D11]
gi|289717272|gb|EFD81284.1| methyltransferase [Fusobacterium sp. D11]
Length = 182
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ ++ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIKGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDVV----RAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|300088242|ref|YP_003758764.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527975|gb|ADJ26443.1| methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 188
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G + + + P RP E+V+GA F +L A+L W LDL+SG
Sbjct: 4 MRIIAGDCKGRPIKVPDRKSTRPATELVRGAIFSML-------ANLTED-WDEVLDLFSG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+GIEA+SRG V FVE +++ NL G + + +H V V E+A F
Sbjct: 56 SGSLGIEALSRGAGHVDFVEQGR-DCCDIIRANLRACGVEESARVHCVPV----EKAVGF 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GK +D + + PPY D L+ ++S + L+G +++V+ + R + G L
Sbjct: 111 LGK--TYDVILMDPPYRREDIGELLEKMSGTELIGPHTWLVITHSPRVTLDSAYGPLALY 168
Query: 286 KDRRFGRTHLAIY 298
K+RR G + +AIY
Sbjct: 169 KERRHGDSVIAIY 181
>gi|255524278|ref|ZP_05391237.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296185397|ref|ZP_06853807.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
gi|255512103|gb|EET88384.1| methyltransferase [Clostridium carboxidivorans P7]
gi|296050231|gb|EFG89655.1| RNA methyltransferase, RsmD family [Clostridium carboxidivorans P7]
Length = 186
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G A+ +K++SP GMD RP ++ VK A F+I+Q+ +L D++SGTG
Sbjct: 1 MRIIAGLAKGRKIMSPIGMDTTRPTLDRVKEAMFNIIQNKTYGSIAL------DVFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + + V+ P S L+ N+E F + + ++++ + E+F
Sbjct: 55 SLGLEAASRGAKQCYLVDRSPETYS-FLVKNVENLKFQQIC--KCINMDSY-KALEEFAR 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY + I K L+ KD IV + R ++ ++ +
Sbjct: 111 KKIVFDLIFIDPPYMKDMIPPAVEIIEKEGLLNKDGLIVTKIDTREELYQGTDKIILVDY 170
Query: 288 RRFGRTHLAIY 298
R++G+T + Y
Sbjct: 171 RKYGKTTVCFY 181
>gi|126700177|ref|YP_001089074.1| hypothetical protein CD630_25590 [Clostridium difficile 630]
gi|255101721|ref|ZP_05330698.1| hypothetical protein CdifQCD-6_12989 [Clostridium difficile
QCD-63q42]
gi|255307590|ref|ZP_05351761.1| hypothetical protein CdifA_13437 [Clostridium difficile ATCC 43255]
gi|423084312|ref|ZP_17072817.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|423088007|ref|ZP_17076392.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|423092587|ref|ZP_17080391.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
gi|115251614|emb|CAJ69447.1| conserved hypothetical protein [Clostridium difficile 630]
gi|357542617|gb|EHJ24659.1| RNA methyltransferase, RsmD family [Clostridium difficile
002-P50-2011]
gi|357543535|gb|EHJ25552.1| RNA methyltransferase, RsmD family [Clostridium difficile
050-P50-2011]
gi|357553457|gb|EHJ35204.1| RNA methyltransferase, RsmD family [Clostridium difficile
70-100-2010]
Length = 184
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKSCTFVDISKESI-DIVKSNIKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + + +I S L+ +D IVVE+ D L K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|399924351|ref|ZP_10781709.1| RsmD family RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 188
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 17/195 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ G R KL +PKGMD RP + VK + F+IL Q+ G LDL+ G+G
Sbjct: 1 MRIISGNRRGLKLRAPKGMDTRPTEDRVKESVFNILGQNFDGDIV-------LDLFCGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ GIE ISRG +V+FV+ + V NLE FL+ V +E ++ +A + +
Sbjct: 54 ANGIEFISRGAEKVYFVDNSKEAIDCVK-SNLEKARFLN----QAVVIENYMNKAIKNL- 107
Query: 228 KDGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
D FDY+ + PP+ D Y+ I ++ ++ + ++VE+ +L G V+IK
Sbjct: 108 -DIKFDYIYIDPPFDRGDLYKKSFKLIRENKILKSEGKLIVEHSSDKSLLIGQG-FVEIK 165
Query: 287 DRRFGRTHLAIYGPD 301
++++G T ++I G D
Sbjct: 166 NKKYGNTSISICGWD 180
>gi|156741789|ref|YP_001431918.1| methyltransferase [Roseiflexus castenholzii DSM 13941]
gi|156233117|gb|ABU57900.1| putative methyltransferase [Roseiflexus castenholzii DSM 13941]
Length = 191
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 10/169 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L +P+G+ RPM++ VK A F +++ G +R GR LDLY+GTGS
Sbjct: 1 MRVITGTAKGRRLKAPEGLGTRPMLDRVKEALFSVIEGYG----PIR-GRVLDLYAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG + FVE V ++ NLE T D + I + VE FL + G
Sbjct: 56 LGIECLSRGAAWADFVEHKVH-VCRIIRENLEHTRLADRARIFPMSVERFL----RTYGH 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+D + + PPY E + + + ++ D ++V + R ++ D
Sbjct: 111 REKYDIIIMDPPYADPAIEATICAVDDANVLTDDGILIVGHSPRVELSD 159
>gi|255656537|ref|ZP_05401946.1| hypothetical protein CdifQCD-2_12754 [Clostridium difficile
QCD-23m63]
gi|296450012|ref|ZP_06891776.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296878393|ref|ZP_06902401.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
gi|296261282|gb|EFH08113.1| RsmD family RNA methyltransferase [Clostridium difficile NAP08]
gi|296430691|gb|EFH16530.1| RsmD family RNA methyltransferase [Clostridium difficile NAP07]
Length = 184
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKACTFVDISKESI-DIVKSNIKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + + +I S L+ +D IVVE+ D L K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|254302821|ref|ZP_04970179.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323013|gb|EDK88263.1| N6-adenine-specific methyltransferase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 182
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEDSIFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDVI----RAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|420155020|ref|ZP_14661891.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
gi|394759862|gb|EJF42525.1| RNA methyltransferase, RsmD family [Clostridium sp. MSTE9]
Length = 183
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KKL S +G VRP + VK A F+I+Q L R LDL++G+G
Sbjct: 1 MRIITGAARGKKLQSLEGERVRPTPDRVKEALFNIIQF------DLEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG E FV+ + V+ N+ TGF + + + +FL R Q
Sbjct: 55 LGLEALSRGAQEAVFVD-SSRDSAGVVERNIAATGFGERAKVVNADFASFLSRNPQ---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY + + Q +A++ I+ E+P ++ + G VK++
Sbjct: 110 --PFDIAFLDPPYRTGLLQQALPQ--TAAVMNHGGTIICEHPSDEELPLSAGDFVKVRSY 165
Query: 289 RFGRTHLAIY 298
R+G+ L +Y
Sbjct: 166 RYGKILLTVY 175
>gi|254976148|ref|ZP_05272620.1| hypothetical protein CdifQC_12574 [Clostridium difficile QCD-66c26]
gi|255093538|ref|ZP_05323016.1| hypothetical protein CdifC_12879 [Clostridium difficile CIP 107932]
gi|255315281|ref|ZP_05356864.1| hypothetical protein CdifQCD-7_13052 [Clostridium difficile
QCD-76w55]
gi|255517949|ref|ZP_05385625.1| hypothetical protein CdifQCD-_12616 [Clostridium difficile
QCD-97b34]
gi|255651065|ref|ZP_05397967.1| hypothetical protein CdifQCD_12831 [Clostridium difficile
QCD-37x79]
gi|260684131|ref|YP_003215416.1| hypothetical protein CD196_2397 [Clostridium difficile CD196]
gi|260687790|ref|YP_003218924.1| hypothetical protein CDR20291_2444 [Clostridium difficile R20291]
gi|306520921|ref|ZP_07407268.1| hypothetical protein CdifQ_14881 [Clostridium difficile QCD-32g58]
gi|384361773|ref|YP_006199625.1| hypothetical protein CDBI1_12425 [Clostridium difficile BI1]
gi|260210294|emb|CBA64593.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213807|emb|CBE05773.1| conserved hypothetical protein [Clostridium difficile R20291]
Length = 184
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+++ S + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNMINSY------IMESEVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV++ + +++ N++ S I + +T +++ + +
Sbjct: 55 LGIECLSRGAKSCTFVDISKESI-DIVKSNVKKARVESESIILNLDFKTAIDKLKL---Q 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + + +I S L+ +D IVVE+ D L K +D+
Sbjct: 111 NSKFDIIFMDPPYYKNMFIEAIEKIDNSNLLNEDGIIVVEHDTNDLFPDKICKLEKTRDK 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGNTTLTFY 180
>gi|296327942|ref|ZP_06870477.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154898|gb|EFG95680.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 182
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYIEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDVI----RAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|421526791|ref|ZP_15973397.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
gi|402256899|gb|EJU07375.1| methyltransferase [Fusobacterium nucleatum ChDC F128]
Length = 182
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYVEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDVI----RAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|237744130|ref|ZP_04574611.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260494285|ref|ZP_05814416.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
gi|229431359|gb|EEO41571.1| methyltransferase [Fusobacterium sp. 7_1]
gi|260198431|gb|EEW95947.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_33]
Length = 182
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDVI----RAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|403224311|dbj|BAM42441.1| uncharacterized protein TOT_040000808 [Theileria orientalis strain
Shintoku]
Length = 315
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 106/202 (52%), Gaps = 8/202 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG R +KL P + VRP+M VK + F+ L+S + +DLY GTGS
Sbjct: 86 LRICGGSIRGRKLCIPP-VYVRPVMSRVKISVFNFLRSLSLFSID-KTTNVIDLYCGTGS 143
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVG 227
+G+E++S G + FV++ + V + ++ GF D I +R ++ L +
Sbjct: 144 LGLESLSYGSHKCTFVDISLKCLKAVNLNTIKC-GFQDKCRI--IRSDSIELINSPYLYN 200
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC--GCLVKI 285
+ FD M V PPY V Y L+ IS+ ++ ++ +VVEYP L L +
Sbjct: 201 INEKFDLMFVAPPYEEVIYSDLLQYISECKILNDNAIVVVEYPKELSFLPHVINDKLFGV 260
Query: 286 KDRRFGRTHLAIYGPDWAQKKR 307
K++++GRT +A+Y + ++ +R
Sbjct: 261 KNKKYGRTVIAMYLFNPSENRR 282
>gi|291522174|emb|CBK80467.1| RNA methyltransferase, RsmD family [Coprococcus catus GD/7]
Length = 187
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 18/177 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR +L S +GM+ RP + +K F++L Q C +LDL+SG+G
Sbjct: 1 MRVIAGKARRIQLKSMEGMNTRPTTDRIKETLFNMLSQDIYEC-------HFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + FVE + V+ + NL T + + I V +T + + +
Sbjct: 54 AIGIEALSRGAASAVFVEHNRQAVA-CIKENLTKTKLMSQAEIMPVECQTAIRQLD---- 108
Query: 228 KDGP--FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCG 280
DG FD + + PPY + ++ Q+ ++ + +++ I++E L T D L+T G
Sbjct: 109 -DGKRHFDIVFMDPPYNKQLEKEMLIQMQHASFINEETMIIIEASLETEFDWLETYG 164
>gi|390934839|ref|YP_006392344.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570340|gb|AFK86745.1| methyltransferase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 194
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL P G +RP ++VK + F+I+ + +LDL+SGTGS
Sbjct: 1 MRVISGIAKGRKLKCPPGKAIRPTSDMVKESLFNII------GIDIYEATFLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
VGIEA+SRG + +FVE V +N+ + N++ G +D + + + L + F
Sbjct: 55 VGIEALSRGANICYFVEK---VYNNIKYIYDNVKLLGSIDNAVVLHMDA---LHALDYFS 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY Y + +IS+ L+ D + +VE+ + D G L K +
Sbjct: 109 KNNIKFDIIYIDPPYYNNLYVEPLNKISEYELLNADGYAIVEHHKNDFLEDKYGKLQKFR 168
Query: 287 DRRFGRTHLAIY 298
+++G T L +
Sbjct: 169 MKKYGETILTFF 180
>gi|253573471|ref|ZP_04850814.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846999|gb|EES75004.1| RsmD family RNA methyltransferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 200
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGRARGRSLKAVPGMGTRPTTDKVKEAIFSMIGP------YFDGGSALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ D + + NL+ TGF ++ ++ E L+ +
Sbjct: 55 LGIEALSRGMDKAVFIDKDFKSIETIR-QNLKATGFETMAEVYKNDAERALK---ALAKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + LM Q+ + L+ ++ IV+EY + G V+I+
Sbjct: 111 EASFDLVFLDPPYRLKHGDALMTQMDELQLLKPEATIVLEYEASYVYPERFGPFVQIRKA 170
Query: 289 RFGRTHLAIYGPD 301
+G T ++IY D
Sbjct: 171 EYGETSVSIYTYD 183
>gi|429728032|ref|ZP_19262777.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
gi|429150704|gb|EKX93601.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
VPI 4330]
Length = 186
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P+ D+RP + VK + F+++ + LDL+SG+G+
Sbjct: 1 MRVISGSARGLKLNTPEDYDIRPTTDRVKESMFNVIS------PYVYDAEVLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S V+F + DP + V N+ F + TV + +L+ K
Sbjct: 55 LGVEALSRGASHVYFCDKDPKSIG-VTKSNISKAKF---EARSTVILGDYLKAISNISSK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D + + PPY + ++ +I ++ +D +VVE+ + + + G + IK++
Sbjct: 111 KEKMDIIFIDPPYYKGLFGEVLKEIVDQGILEEDGILVVEHDYQVAIEEVDGLNI-IKNK 169
Query: 289 RFGRTHLAIYG 299
++G+T + IYG
Sbjct: 170 KYGKTAVTIYG 180
>gi|222056365|ref|YP_002538727.1| methyltransferase [Geobacter daltonii FRC-32]
gi|221565654|gb|ACM21626.1| methyltransferase [Geobacter daltonii FRC-32]
Length = 187
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 7/189 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL SPK M VRP + VK + F+IL + L R LD+++GTGS
Sbjct: 1 MRIISGSAKGRKLASPKDMRVRPTADRVKESLFNILTN---LMDDLSAVRTLDIFAGTGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG + FV+ + + ++ NL+ GF + S + L E+
Sbjct: 58 LGIEMLSRGGAYAVFVD-NHRQSAAMIAKNLQMLGFAEKSRLMVEEALVALRLLER--QG 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
DG FD + + PPY+ E ++ +S S L D+ +V E+ ++ D+ G L + R
Sbjct: 115 DG-FDLIFLDPPYSKGHTEKILEFLSHSLLATDDTIVVAEFSVQEDIPAGFGQLQQFDRR 173
Query: 289 RFGRTHLAI 297
+G T LA
Sbjct: 174 VYGDTVLAF 182
>gi|34763572|ref|ZP_00144507.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237742322|ref|ZP_04572803.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256845601|ref|ZP_05551059.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294785110|ref|ZP_06750398.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|421145506|ref|ZP_15605372.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|27886761|gb|EAA23899.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429970|gb|EEO40182.1| methyltransferase [Fusobacterium sp. 4_1_13]
gi|256719160|gb|EEU32715.1| RsmD family RNA methyltransferase [Fusobacterium sp. 3_1_36A2]
gi|294486824|gb|EFG34186.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 3_1_27]
gi|395488092|gb|EJG08981.1| methyltransferase [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 182
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKVIDKANILAEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|56964143|ref|YP_175874.1| N-6 adenine-specific DNA methylase [Bacillus clausii KSM-K16]
gi|56910386|dbj|BAD64913.1| N6-adenine-specific DNA methylase [Bacillus clausii KSM-K16]
Length = 183
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR +L + G RP + VK A F+I+ G+ LDLY+G+G+
Sbjct: 1 MRVIAGEARGLQLKAVPGKTTRPTTDKVKEAMFNIIGP------YFDGGKALDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + ++ + NL TG+ D + ++ R ++ RA + VGK
Sbjct: 55 LGIEALSRGMESCIFVDQNKQAIATIH-ANLSRTGYTDKAEVY--RNDSL--RALKAVGK 109
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D F+ + + PPY + I L+ V E L + DT G L+K ++
Sbjct: 110 RDVAFELILLDPPYAKQQIATIFGLIDDYHLLAPAGVTVCETALHIQLPDTAGPLIKERE 169
Query: 288 RRFGRTHLAIY 298
+G T L +Y
Sbjct: 170 ECYGDTKLTVY 180
>gi|148264544|ref|YP_001231250.1| putative methyltransferase [Geobacter uraniireducens Rf4]
gi|146398044|gb|ABQ26677.1| putative methyltransferase [Geobacter uraniireducens Rf4]
Length = 207
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G A+ +KL SPK M VRP + VK A F+IL S G + L R LD+++GTG+
Sbjct: 19 LRIISGSAKGRKLFSPKNMRVRPTADRVKEALFNILTSLIGDFSDL---RVLDIFAGTGN 75
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + ++ NLE GF + I L+ E+ +
Sbjct: 76 LGIEALSRGGTRTVFVDSHRESAA-IIRKNLEMLGFDQKAGILVQEALVALKALEK---R 131
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY E + ++ S L+ ++ IV E+ + + + G L + R
Sbjct: 132 GEKFHLVFLDPPYQTGLTEKTLEYLAVSGLITDETIIVAEFSAQEAIPTSFGQLQEFDRR 191
Query: 289 RFGRTHLAI 297
+G T LA
Sbjct: 192 VYGDTALAF 200
>gi|289578491|ref|YP_003477118.1| methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528204|gb|ADD02556.1| methyltransferase [Thermoanaerobacter italicus Ab9]
Length = 184
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGNEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ V + + L F + ++V L+++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSVKCIRENVAELNLIPFAKILHRDVLKVIEILDQS---- 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + ++ K+ L+ + I+ E+ + +T G LVKI+
Sbjct: 111 --NTKFDIIFLDPPYYQNLAEKTLIKLGKAKLLKRGGIIIAEHHKNDKVKETYGNLVKIR 168
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|336401304|ref|ZP_08582075.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
gi|336161214|gb|EGN64221.1| RsmD family RNA methyltransferase [Fusobacterium sp. 21_1A]
Length = 182
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----VRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILVEDGLIICEHHLLEDLEDNVAAFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|225016608|ref|ZP_03705800.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
gi|224950572|gb|EEG31781.1| hypothetical protein CLOSTMETH_00515 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
R ++V+ G AR +KL + +G DVRP + VK F I+Q L LDL++G+
Sbjct: 4 RFMRVITGSARGRKLRTLEGQDVRPTTDRVKEGIFSIIQ------FDLPGANVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG FV+ V NL+ G S + E+FL
Sbjct: 58 GQLGIEALSRGAKFCVFVD-SSRASHEVEKENLKTVGLFKQSRVVLSEAESFL------A 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G FD + + PPY ++ + K + +D+ ++ E+ L+ D+ + G LVK K
Sbjct: 111 GTKEVFDIVLLDPPYNQNLIPPVLEMLQKR--LAEDAIVLCEHELKEDLPEQIGKLVKHK 168
Query: 287 DRRFGRTHLAIY 298
D ++G+ + +Y
Sbjct: 169 DYKYGKIKVTVY 180
>gi|156096502|ref|XP_001614285.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803159|gb|EDL44558.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 410
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++L + GK + +++ SP RPMM VK + F IL G S LD++SG+
Sbjct: 189 KILSIHEGKLKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--HINVLDVFSGS 245
Query: 167 GSVGIEAISRGCSEVHFVEMD----PWVVSNVLIPNL--EWTGFLDVSSIHTVRVETFLE 220
G++GIE ISR V FV++ + N+ + N+ + + ++ ++
Sbjct: 246 GNLGIECISRDIPHVTFVDLSLNSCKTIYENLKLCNIPHSYNQIIRADAMELLKCPFKFH 305
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTC 279
E+F TPPY + Y L+ IS S L D + +EYP +ML
Sbjct: 306 LGEKF-------HLAFFTPPYEQIVYSELIQNISNSELFHPDCLVFIEYPKEIEMLPQRV 358
Query: 280 GCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKK 312
+V +++R+FGRT+ A+Y + + K +E++
Sbjct: 359 YNMVGLRNRKFGRTYFALYVLNSSGKYLSAERR 391
>gi|163797847|ref|ZP_02191792.1| putative methyltransferase [alpha proteobacterium BAL199]
gi|159176891|gb|EDP61458.1| putative methyltransferase [alpha proteobacterium BAL199]
Length = 187
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++P G+++RP E + A F IL G P +LR R LDL+SGTG+
Sbjct: 1 MRIVAGKHRGARLVAPDGLEIRPTSERAREALFSILDG-GRFPLTLRGARVLDLFSGTGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG ++V FVE ++ + I L G + R F+ER +
Sbjct: 60 LGLEALSRGAAQVVFVESGAAALAALRANIATLRAAGIAQIREADATR---FIERTPE-- 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
P D + + PPY + + + I + VG D+ I VE + + G +
Sbjct: 115 ----PVDLVLMDPPYGSGLWVEALDTIGRGGWVGPDTVIAVEVGKKEAVSAPEGYTLA-D 169
Query: 287 DRRFGRTHL 295
DRR+G L
Sbjct: 170 DRRYGAARL 178
>gi|297544767|ref|YP_003677069.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842542|gb|ADH61058.1| methyltransferase [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 184
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLRGRKIKSIEGSEVRPTADRVKESLFNILMN------KIEGSVFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +FV+ V + N+ + + I V +E +Q
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSVKCIR-ENVAELNLIPFAKILHRDVLKVIEILDQ---N 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY E + ++ K+ L+ + I+ E+ + +T G LVKI++
Sbjct: 111 NTKFDIIFLDPPYYQNLAEKTLIKLGKAKLLKRGGIIIAEHHKNDKVKETYGNLVKIREN 170
Query: 289 RFGRTHLAIY 298
++G T L+ Y
Sbjct: 171 KYGETILSFY 180
>gi|57235055|ref|YP_180937.1| methyltransferase [Dehalococcoides ethenogenes 195]
gi|57225503|gb|AAW40560.1| methyltransferase, putative [Dehalococcoides ethenogenes 195]
Length = 192
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RACCDIIKQNLETIGCAGQAHVYCLDV----PKAMSL 107
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GK +D + PPY ++ ++ S+L+G+++ + V + + + G L +
Sbjct: 108 LGKQ--YDVILADPPYRNQQIGEVLEKLGNSSLIGENTVMAVTHSAHLTLAERYGRLTML 165
Query: 286 KDRRFGRTHLAIYGPD 301
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|384109809|ref|ZP_10010671.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
gi|383868641|gb|EID84278.1| RNA methyltransferase, RsmD family [Treponema sp. JC4]
Length = 182
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGRIIKCPDGV-IRPAMDRMRESVFSILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFV 226
+ IEA+SRG S V E D V+ VL N+E T I H + VE F++R +
Sbjct: 53 IAIEAVSRGASHVELCEKDKIKVNTVL-ENVEVTEKECGVKIKCHFMPVEYFIKRCKS-- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
FDY+ PP+ +E L+ + ++ ++ I+V P M D G L ++
Sbjct: 110 ----KFDYIFFDPPFPYKFHEDLIKKADEAGMLNPTGMIMVHRPEEHFMPDAIGNLTRVD 165
Query: 287 DRRFGRTHLAIYG 299
R +GR+ + Y
Sbjct: 166 QRVYGRSIVDFYA 178
>gi|219130778|ref|XP_002185534.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403065|gb|EEC43021.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGC-PASLRPGRWLDLYSGT 166
+L++ G A+ ++L SP + +RPMM V+ A + + G PA+ R LD+++G+
Sbjct: 1 MLRIAAGTAKGRRLDSPN-VYLRPMMGKVREAVYSTFTAFGLYDPATTT--RHLDIFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQF 225
GSVG+E++SRG + FV++ S V N++W F I ++ E
Sbjct: 58 GSVGLESLSRGAAHCTFVDLSEDCCSAVE-RNVKWCDFAGKEQIVCGEAIQVLNEPFAAG 116
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC------ 279
+ + + +++ PPY + Y L+ ++ S +V D+ +++EYP+ L
Sbjct: 117 IPELQTYQLVTLCPPYEEIVYGDLIEAVANSPVVTDDTVVLIEYPVELGCLPHVVRRRDG 176
Query: 280 GCLVKIKDRRFGRTHLAIY 298
G +V +++RR+GRT +AIY
Sbjct: 177 GAMVGVRNRRYGRTVIAIY 195
>gi|19704664|ref|NP_604226.1| methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714972|gb|AAL95525.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ A S+ +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII--APYIEGSI----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILAEDGLIICEHHLLEDLEDNIVSFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|340750024|ref|ZP_08686871.1| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
gi|340562526|gb|EEO34715.2| RsmD family RNA methyltransferase [Fusobacterium mortiferum ATCC
9817]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MRIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + V RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDAEALK-YIIENVNNLGYEDRCRAYKNDV----LRAIEILGR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY +M I K ++ +D I+ E+ + +M DT G K +
Sbjct: 110 KGEKFNIIFMDPPYKDEVCTRVMKAIEKHKILAEDGLIICEHHVFEEMADTVGEYKKADE 169
Query: 288 RRFGRTHLAIY 298
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|336418713|ref|ZP_08598985.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|423137071|ref|ZP_17124714.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
gi|336164390|gb|EGN67297.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 11_3_2]
gi|371961138|gb|EHO78781.1| RsmD family RNA methyltransferase [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------TPYIEGSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EAISRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAISRGAKRAVMIEKDGEALK-YIIENIDNLGFSDRCRAYKNDV----IRAIEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + ++ I K+ ++ +D I+ E+ L D+ D K +
Sbjct: 110 KNEKFDIIFMDPPYQDNVTKKVLKAIDKANILVEDGLIICEHHLLEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|197118275|ref|YP_002138702.1| DNA methyltransferase [Geobacter bemidjiensis Bem]
gi|197087635|gb|ACH38906.1| DNA methyltransferase, putative [Geobacter bemidjiensis Bem]
Length = 193
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET---FLERAEQF 225
+GIEA+SRG F++ + + NLE T F + + T +L R E+
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFTEKGKVVTQEAAAALKWLARGEK- 115
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
PF + + PPY E ++ +S S L+ S +V E+ + ++ + G L +I
Sbjct: 116 -----PFHLVFLDPPYGEGHTERVLELLSSSPLIDAGSTVVAEFAAKEEIPRSFGRLTEI 170
Query: 286 KDRRFGRTHLAI 297
+ R +G T L+
Sbjct: 171 ERRVYGDTALSF 182
>gi|167745657|ref|ZP_02417784.1| hypothetical protein ANACAC_00349 [Anaerostipes caccae DSM 14662]
gi|167654969|gb|EDR99098.1| RNA methyltransferase, RsmD family [Anaerostipes caccae DSM 14662]
Length = 187
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 95/170 (55%), Gaps = 12/170 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC FVE + + + NL T ++ + + +ET + A + +G
Sbjct: 55 IGIEALSRGCKHAVFVEKNKKAAACIR-DNLIHTKLINDAQV----LETDVISALRKLGS 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+ FDY+ + PPY ++A++ L+ +++ ++ E L+T++ D
Sbjct: 110 ESRKFDYIFMDPPYNKGMERAVLAELDHLDLLKENTLVIAESSLQTEIQD 159
>gi|210615577|ref|ZP_03290675.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
gi|210150244|gb|EEA81253.1| hypothetical protein CLONEX_02893 [Clostridium nexile DSM 1787]
Length = 196
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 97/170 (57%), Gaps = 15/170 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
+++V+ G A+R +L + G+D RP + +K F+++ + A C +LDL+SG
Sbjct: 12 IMRVIAGSAKRLQLKTIDGLDTRPTTDRIKETLFNMISHEIADSC--------FLDLFSG 63
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G++GIEA+SRG E FVE + ++ + NL +T S + + V + L+R E
Sbjct: 64 SGAIGIEALSRGAKEAVFVEQNRKAMACIR-ENLTFTKLAKQSVLLEMDVLSALKRLE-- 120
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
GK FDY+ + PPY + + ++ +S+S ++ +D+ ++VE L T+
Sbjct: 121 -GK-YQFDYIFMDPPYRKMLEKQVLEYLSESTILSQDAVVIVESSLDTEF 168
>gi|442804249|ref|YP_007372398.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740099|gb|AGC67788.1| RNA methyltransferase, RsmD family [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 173
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS 179
KL +PKG++ RP ++ VK + F+IL P S + LDL++GTG++ IEA+SRG
Sbjct: 2 KLKTPKGLNTRPTVDSVKESIFNILNPY--IPGS----KVLDLFAGTGALAIEALSRGAE 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
+FVE + N++ NL T FLD ++ +V FL +F ++ FD + + P
Sbjct: 56 LAYFVE-ENRNCCNIIRENLAHTKFLDKGVVYCRKVSNFL---REFNPENIKFDIIFMDP 111
Query: 240 PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LDTCGCLVKIKDRRFGRTHLAIY 298
PY+ + + + ++ ++ +V E+ R +M D+ G L KI+ + +G T ++ +
Sbjct: 112 PYSRNFIQETLQLLMENDIINDKGIVVCEHH-RNEMPSDSIGNLRKIRVKNYGDTRVSFF 170
>gi|340754747|ref|ZP_08691483.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|421500014|ref|ZP_15947037.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313685756|gb|EFS22591.1| RsmD family RNA methyltransferase [Fusobacterium sp. D12]
gi|402269115|gb|EJU18461.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 182
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEAL-RFIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY ++ QI ++ ++ I+ E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGSFQKVDE 169
Query: 288 RRFGRTHLAIY 298
RR+ + + Y
Sbjct: 170 RRYQKKVITFY 180
>gi|73748121|ref|YP_307360.1| methyltransferase [Dehalococcoides sp. CBDB1]
gi|289432198|ref|YP_003462071.1| methyltransferase [Dehalococcoides sp. GT]
gi|452203032|ref|YP_007483165.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452204451|ref|YP_007484580.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
gi|73659837|emb|CAI82444.1| putative methyltransferase [Dehalococcoides sp. CBDB1]
gi|288945918|gb|ADC73615.1| methyltransferase [Dehalococcoides sp. GT]
gi|452110091|gb|AGG05823.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi DCMB5]
gi|452111507|gb|AGG07238.1| putative ribosomal RNA small subunit methyltransferase
[Dehalococcoides mccartyi BTF08]
Length = 192
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 18/196 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV----PKAMAF 107
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ K +D + PPY ++ ++ S L+G+++ + V + + + G L +
Sbjct: 108 LKKQ--YDVILADPPYRNQQIGEVLEKLGNSGLIGENTVMAVTHSAHLTLAECYGRLKML 165
Query: 286 KDRRFGRTHLAIYGPD 301
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|355677721|ref|ZP_09060488.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
gi|354812807|gb|EHE97421.1| RsmD family RNA methyltransferase [Clostridium citroniae WAL-17108]
Length = 185
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + K F++LQ G C ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVEGMDTRPTTDRTKETLFNMLQPQIGDC-------KFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + +E +P + + NLE T D + + V L++ E G
Sbjct: 54 AIGIEALSRGAAMAVMIENNPKAIE-CIRENLERTKLEDRALVMNCDVLAGLKKLE---G 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
++ FD + + PPY +++ ++ SA+V +D+ ++E T+
Sbjct: 110 RNYKFDMVFMDPPYGHGHERLVLEYLAHSAMVTEDTVFIIEASRETE 156
>gi|28210920|ref|NP_781864.1| methyltransferase [Clostridium tetani E88]
gi|28203359|gb|AAO35801.1| methyltransferase [Clostridium tetani E88]
Length = 185
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 104/194 (53%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+L P+GM+ RP ++ VK F+++Q + + LDL++GTGS
Sbjct: 1 MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQ------VHVYGAKTLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFL-ERAEQ 224
+G+EA+SRG SE + ++ P S +L N++ GF D ++ + TFL E+ E+
Sbjct: 55 LGLEAVSRGASECYLIDRFPKTYS-LLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEE 113
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY + +I + L+ +D I ++ + ++ + +
Sbjct: 114 -------FDLIFIDPPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEGSEHIKL 166
Query: 285 IKDRRFGRTHLAIY 298
++ +R+G T + Y
Sbjct: 167 VRIKRYGNTTVCFY 180
>gi|294782567|ref|ZP_06747893.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
gi|294481208|gb|EFG28983.1| RNA methyltransferase, RsmD family [Fusobacterium sp. 1_1_41FAA]
Length = 182
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY ++ I K+ ++ D I+ E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L Y
Sbjct: 170 RKYNKKILTFY 180
>gi|210622471|ref|ZP_03293176.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
gi|210154184|gb|EEA85190.1| hypothetical protein CLOHIR_01124 [Clostridium hiranonis DSM 13275]
Length = 189
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL PK VRP + VK + F+I+ S + LDL++G+GS
Sbjct: 1 MRVISGKARGLKLNPPKDQSVRPTTDRVKESLFNIINSY------VMDANVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE---TFLERAEQF 225
+GIE +SRG F ++ + + S+I RVE T + + +
Sbjct: 55 LGIECLSRGAEHCVFSDLSKESIKIIQ------------SNIKKARVERESTVINKDYKN 102
Query: 226 VGKD-----GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
V D FD + + PPY + + +I K+ ++ +D IVVE+ + ++ D G
Sbjct: 103 VISDMGIKKQEFDIIMLDPPYYEGLFVDCIERIDKNQILSEDGVIVVEHDKKDELPDEIG 162
Query: 281 CLVKIKDRRFGRTHLAIY 298
+VK+K++++G T L+ Y
Sbjct: 163 NIVKVKEKKYGITVLSFY 180
>gi|153954010|ref|YP_001394775.1| hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219854624|ref|YP_002471746.1| hypothetical protein CKR_1281 [Clostridium kluyveri NBRC 12016]
gi|146346891|gb|EDK33427.1| Hypothetical protein CKL_1385 [Clostridium kluyveri DSM 555]
gi|219568348|dbj|BAH06332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 186
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSG 165
++V+GG AR +KL+SPKG + RP ++ VK A F+I+Q+ G C LD+++G
Sbjct: 1 MRVIGGLARGRKLMSPKGYNTTRPTLDRVKEAMFNIIQNRIYGSC--------VLDIFAG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+G+EA SRG + V+ D S L N+E GF ++ FL + E+
Sbjct: 53 TGSLGLEAASRGAKKCLLVDKDKDTFS-FLKQNVENLGFSEICETINRDSYEFLRQIER- 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K FD + V PPY ++ + L+ +D IV + ++ + ++
Sbjct: 111 --KTEIFDIIFVDPPYKKNMIPPIIEIVGSKKLLCEDGIIVTKIDTGEEIYEGINNIILT 168
Query: 286 KDRRFGRTHLAIY 298
RR+G T + Y
Sbjct: 169 DHRRYGNTTVCFY 181
>gi|255281786|ref|ZP_05346341.1| RNA methyltransferase, RsmD family [Bryantella formatexigens DSM
14469]
gi|255267853|gb|EET61058.1| RNA methyltransferase, RsmD family [Marvinbryantia formatexigens
DSM 14469]
Length = 188
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 18/183 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + +GMD RP + +K F++L + GC R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLALKTVEGMDTRPTTDRIKETLFNMLNAQIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG FVE + + + NL +T D + + V + L + E
Sbjct: 54 AIGIEALSRGAESAVFVEHNRR-AAQCIQQNLSFTRLKDRAVLMQTDVCSALRKME---- 108
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCG-CLV 283
+ PFD + + PPY ++ EVL ++ S+L + I+ E L T D LD G L+
Sbjct: 109 GEKPFDIIFMDPPYRQGLEREVL-EMLADSSLADAQTLIITEAALDTAFDYLDGLGYSLL 167
Query: 284 KIK 286
K K
Sbjct: 168 KYK 170
>gi|323691872|ref|ZP_08106126.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|355627815|ref|ZP_09049446.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
gi|323504079|gb|EGB19887.1| RsmD family RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|354820140|gb|EHF04566.1| RsmD family RNA methyltransferase [Clostridium sp. 7_3_54FAA]
Length = 186
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY + + ++ ++ SAL D+ I+ E T M
Sbjct: 110 RQLVFDIIFMDPPYNQLLEKAVLEYLAHSALTHADTLIIAEASRETGM 157
>gi|419840643|ref|ZP_14364031.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386907586|gb|EIJ72293.1| RNA methyltransferase, RsmD family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 182
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEALR-FIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY ++ QI ++ ++ I+ E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGKFQKVDE 169
Query: 288 RRFGRTHLAIY 298
RR+ + + Y
Sbjct: 170 RRYQKKVITFY 180
>gi|326201983|ref|ZP_08191853.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
gi|325987778|gb|EGD48604.1| methyltransferase [Clostridium papyrosolvens DSM 2782]
Length = 184
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ AS PG LDL++G+
Sbjct: 1 MLRVISGSAKGLKLSTLEGMNTRPTTDRVKENLFNII-------ASYIPGSNILDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG F + + ++ NLE T +D S I + L++ Q
Sbjct: 54 GSLGIEALSRGAESAVFCDQSEQ-STEIITRNLEHTKLMDKSEIFLGEAQIILKKLSQLS 112
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K FD + + PPY ++ + S ++ + I VE + + G L +
Sbjct: 113 KK---FDIIFLDPPYKKEIVPGILQNLENSGVLDEKVLISVETDIEDQLPQEIGTLCVSR 169
Query: 287 DRRFGRTHLAIY 298
+ +G+T L Y
Sbjct: 170 QQVYGKTKLTFY 181
>gi|166031898|ref|ZP_02234727.1| hypothetical protein DORFOR_01599 [Dorea formicigenerans ATCC
27755]
gi|166028351|gb|EDR47108.1| RNA methyltransferase, RsmD family [Dorea formicigenerans ATCC
27755]
Length = 183
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE +P + + NLE T D + + V L R +
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAKTMQMDVFAALSR----LNG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ F+Y+ + PPY + ++ ++ + L+ D I+VE TD+
Sbjct: 110 EWKFEYIFMDPPYNHEWEKQVLEFLTDTTLLADDGIIIVEASKETDL 156
>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
gi|149833243|gb|EDM88325.1| RNA methyltransferase, RsmD family [Ruminococcus obeum ATCC 29174]
Length = 184
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLALKTVPGMETRPTTDRIKETLFNILQP------EIPDCRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +P + + NL +T + + + V L+ G+
Sbjct: 55 IGIEALSRGAESAVFVEKNPKACA-CIRENLTFTKLAEHGKLLNMDV---LQALRSLEGE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY ++ + S+L D+ IV E L TD
Sbjct: 111 EA-FDCIFMDPPYNKDLERQVLEYLKDSSLANTDTLIVTEADLHTDF 156
>gi|346306212|ref|ZP_08848374.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
gi|345905933|gb|EGX75668.1| RsmD family RNA methyltransferase [Dorea formicigenerans
4_6_53AFAA]
Length = 183
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + GMD RP + +K F+++ A L +LDL+SG+G
Sbjct: 1 MRVIAGTARRLQLKTLDGMDTRPTTDRIKETLFNMI------SAELYDSNFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE +P + + NLE T D + + V L R +
Sbjct: 55 IGIEALSRGAANAVFVEKNPKAMK-CIQENLESTKLKDRAKTMQMDVFAALSR----LNG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ F+Y+ + PPY + ++ ++ + L+ D I+VE TD+
Sbjct: 110 EWKFEYIFMDPPYNHEWEKQVLEFLADTTLLADDGIIIVEASKETDL 156
>gi|414154287|ref|ZP_11410606.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454078|emb|CCO08510.1| putative methyltransferase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 184
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L SP+GM RP + V+ A F+IL P S R+LDL+SGTG+
Sbjct: 1 MRVIAGSARGRILKSPRGMSTRPTADRVREALFNILSPL--VPDS----RFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
V IEA+SRG + VE D + ++ NL+ G L+ + + + V +R Q +G
Sbjct: 55 VAIEALSRGAARAVLVEKDRQ-TAGIIYENLKLCGLLNQAEVLAMDV----DRGLQVLGQ 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LDTCGCLVKIK 286
+ FD + + PPY + + ++ + ++ VVE R D+ D G LV +
Sbjct: 110 RKDVFDLIFIDPPYRKGFEKPTIEKVLRHNILAAGGIAVVESN-RADLPPDRVGNLVAYR 168
Query: 287 DRRFGRTHLAIY 298
+++G T L Y
Sbjct: 169 CQQYGDTALTFY 180
>gi|335039528|ref|ZP_08532688.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
gi|334180596|gb|EGL83201.1| methyltransferase [Caldalkalibacillus thermarum TA2.A1]
Length = 190
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F+++ + R G LDL++GTGS
Sbjct: 1 MRVISGTFKGRRLTAVPGHHTRPTADRVKEAIFNLIPDD-----TYRDGTGLDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC + F++ P V V+ NL+ G + S ++ RA + + K
Sbjct: 56 LGIEALSRGCRRMIFIDHHPMAVK-VIYQNLKALGLSENSEVY----RNDARRALKVLAK 110
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY + V+++ I + L+ + IVVE T + + L+ K
Sbjct: 111 RGLQFEIIFLDPPYARHNLPVILSLIEEYNLLRPEGVIVVETAKGTALNNKLNQLILDKH 170
Query: 288 RRFGRTHLAIY 298
+G T + IY
Sbjct: 171 HHYGDTEIRIY 181
>gi|239826501|ref|YP_002949125.1| methyltransferase [Geobacillus sp. WCH70]
gi|239806794|gb|ACS23859.1| methyltransferase [Geobacillus sp. WCH70]
Length = 189
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + G+ RP + VK A F+++ G LDL+SG+G
Sbjct: 1 MRVISGKCKGRRLQAVPGISTRPTTDKVKEAIFNMV------GPYFSGGMGLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ L+ + I+ ERA + + K
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTVK-KNVATCRLLEQAEIY----RNDAERALRAIIK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY E +++ I + L+ KD +VVE+ T + + G LVK K
Sbjct: 110 RGLRFHLIFLDPPYKEQKLESILSFIDEHELLEKDGAVVVEHSAETHLAEQVGRLVKWKH 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 EVYGITAVSIY 180
>gi|358466377|ref|ZP_09176207.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069127|gb|EHI79075.1| hypothetical protein HMPREF9093_00677 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 182
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSIV------APYIENSLFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + + I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALKYI-IENIDSLGFTDRCRAYKNDV----IRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY ++ I+K+ ++ D I+ E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIAKADILADDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|291545920|emb|CBL19028.1| RNA methyltransferase, RsmD family [Ruminococcus sp. SR1/5]
Length = 182
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 13/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ GKARR L + G + RP + +K F+ILQ GC R+LDL+SG+G
Sbjct: 1 MRVIAGKARRLNLKTIPGNETRPTTDRIKETLFNILQPEIPGC-------RFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG FVE +P + + NL +T D + + V L+ G
Sbjct: 54 AIGIEALSRGAEYAVFVEKNPKACT-CIRENLSFTKLTDGGKLLNMDV---LQALRSLEG 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ PFD + + PY + ++ ++ S L +++ IVVE L TD
Sbjct: 110 GE-PFDCIFMDAPYEQHLEQPVLEYLADSTLADENTLIVVEEDLHTDF 156
>gi|153853066|ref|ZP_01994475.1| hypothetical protein DORLON_00460 [Dorea longicatena DSM 13814]
gi|149753852|gb|EDM63783.1| RNA methyltransferase, RsmD family [Dorea longicatena DSM 13814]
Length = 189
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARRTQLKTLEGMDTRPTTDRIKETLFNMI------APYLYDSIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL+ T F + V T L + E
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACVK-ENLQKTHFERKGMTMQMDVMTALYKLE----G 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+ FDY+ + PPY + ++ +++S+L+ ++ I+VE TD
Sbjct: 110 EKQFDYIFMDPPYNHELEKSVLTYLAESSLLAEEGIIIVEASKETD 155
>gi|373111993|ref|ZP_09526228.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|371656561|gb|EHO21886.1| RsmD family RNA methyltransferase [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
Length = 175
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F I+ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSII------APHLEESIFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDAEALR-FIIENVNTLGYQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY ++ QI ++ ++ I+ E+ DM D G K+ +
Sbjct: 110 KGEKFNIIFMDPPYQDNVCTKVLEQIDNCGILEEEGIIICEHHAFEDMADQVGSFQKVDE 169
Query: 288 RRFGR 292
RR+ +
Sbjct: 170 RRYQK 174
>gi|422317032|ref|ZP_16398401.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
gi|404590303|gb|EKA92750.1| RsmD family RNA methyltransferase [Fusobacterium periodonticum D10]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYIENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY ++ I K+ ++ D I+ E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILSDDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|317472740|ref|ZP_07932053.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
gi|316899766|gb|EFV21767.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
Length = 187
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR +L + +GMD RP + +K F+++Q + +LDL++G+G+
Sbjct: 1 MRVISGKARSLRLKTVEGMDTRPTQDRIKETLFNMIQH------EIAGAEFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC FVE + + + NL T ++ + + +ET + A + +G
Sbjct: 55 IGIEALSRGCKHAVFVEKNKKAAACIRY-NLIHTKLINDAQV----LETDVISALRKLGA 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FDY+ + PPY ++A++ L+ +++ ++ E L+T++
Sbjct: 110 ESRKFDYIFMDPPYNKGMERAVLAELDHLDLLKENTLVIAESSLQTEI 157
>gi|160933338|ref|ZP_02080726.1| hypothetical protein CLOLEP_02183 [Clostridium leptum DSM 753]
gi|156867215|gb|EDO60587.1| RNA methyltransferase, RsmD family [Clostridium leptum DSM 753]
Length = 210
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 15/193 (7%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ ++V+ G AR ++L + +G +VRP E +K A F I+Q + R+LDL++G
Sbjct: 25 EKAMRVITGSARGRRLQTLEGQEVRPTPERIKEAVFSIIQ------FQIEGRRFLDLFAG 78
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G +GIEA+SRG E FV+ V ++ NLE TG + + FL +
Sbjct: 79 SGQMGIEALSRGAREAVFVDSRKDSV-QIIRENLEKTGLGQQGRVVNMDSLAFLSQP--- 134
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+G FD + PPY E + SA+V I+ E+P ++ G VK
Sbjct: 135 ---NGKFDLAFLDPPYRTGLLEKALEMT--SAVVKPGGVILCEHPADEELPAQAGDFVKR 189
Query: 286 KDRRFGRTHLAIY 298
+D R G+ +++Y
Sbjct: 190 RDYRHGKILISLY 202
>gi|358063819|ref|ZP_09150419.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
gi|356697956|gb|EHI59516.1| RsmD family RNA methyltransferase [Clostridium hathewayi WAL-18680]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 16/176 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLR-PGR-WLDLYSGT 166
++V+ G ARR L + +G+D RP + +K F+++ +LR PG +LDL+SG+
Sbjct: 1 MRVIAGSARRLNLKTIEGLDTRPTTDRIKETLFNMI--------NLRLPGSTFLDLFSGS 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG + FVE +P V + NL T + + + + L+R E
Sbjct: 53 GGIGIEALSRGAVQAVFVEQNPKAVE-CIRENLRTTRLEEKAVVMACDALSGLKRLE--- 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCG 280
GK+ FD + + PPY + + ++ S L+ ++S I+VE L TD +D+ G
Sbjct: 109 GKNYVFDTVFMDPPYDRELERLALEYLAGSELIDENSVIIVEASLATDFSYVDSLG 164
>gi|404496621|ref|YP_006720727.1| DNA methyltransferase [Geobacter metallireducens GS-15]
gi|418066708|ref|ZP_12704067.1| methyltransferase [Geobacter metallireducens RCH3]
gi|78194224|gb|ABB31991.1| DNA methyltransferase, putative [Geobacter metallireducens GS-15]
gi|373560021|gb|EHP86297.1| methyltransferase [Geobacter metallireducens RCH3]
Length = 188
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG AR ++L +P+G VRP + VK A F IL S G +L R LD+++GTG+
Sbjct: 1 MRVIGGTARGRRLAAPRGERVRPTADRVKEALFSILTSLLG---NLEGLRVLDVFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGCSE FV+ + ++ NL D + + L+ + +
Sbjct: 58 LGIEALSRGCSEAIFVDSHRESAA-IIRQNLTQLNLTDRGRVIVKDAASALQCLNENI-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PF + + PPY E ++ ++ + V +++ IV E + G L + R
Sbjct: 115 -APFTIIFLDPPYRQGLAEKVLGILASAPFVTRETIIVSESDSSEVFPERFGALQQFDRR 173
Query: 289 RFGRTHLAIY 298
+G T L +
Sbjct: 174 VYGDTALTFF 183
>gi|340752558|ref|ZP_08689357.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
gi|229422356|gb|EEO37403.1| RsmD family RNA methyltransferase [Fusobacterium sp. 2_1_31]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY ++ I K+ ++ D I+ E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLEDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|291007089|ref|ZP_06565062.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
Length = 193
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 98/197 (49%), Gaps = 17/197 (8%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 5 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + FVE D V +L N GF DV S+ +VET L A G+
Sbjct: 59 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA---AGE-- 111
Query: 231 PFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY A + ++ ++ + DS +VVE R+ D L ++ +
Sbjct: 112 PFDVVLADPPYDVDAARLDQVLRSLAANGWTAPDSLVVVERSTRSGEPDWPAPLRALRTK 171
Query: 289 RFGRT--HLAIYGPDWA 303
R+G T H A++ D A
Sbjct: 172 RYGDTAVHWAVHEADAA 188
>gi|159036817|ref|YP_001536070.1| putative methyltransferase [Salinispora arenicola CNS-205]
gi|157915652|gb|ABV97079.1| putative methyltransferase [Salinispora arenicola CNS-205]
Length = 187
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGTGTRPTSDRVREALFSALQTA----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE +P + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGATHVLLVESNP-RAARVIRANMTALRAGPAAQLVTGKVATVLA-----AG 110
Query: 228 KDG-PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+G P+D + PPY D EV ++A ++ + + D+ +VVE RT + +
Sbjct: 111 PEGDPYDAVFADPPYAVSDEEVSTMLAALADNGWLASDALVVVERSSRTGPVGWVQGITG 170
Query: 285 IKDRRFGRTHL 295
+ RR+G T L
Sbjct: 171 ERSRRYGETIL 181
>gi|323484799|ref|ZP_08090156.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
gi|323401905|gb|EGA94246.1| hypothetical protein HMPREF9474_01907 [Clostridium symbiosum
WAL-14163]
Length = 186
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G A+R L + +G D RP + +K F+++Q+ GC +LDL+SG+G
Sbjct: 1 MRVIAGSAKRLLLKTIEGKDTRPTTDRIKETLFNMMQNDVYGCT-------FLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG VE +P + + NL+ T D +++ V T L+R E+
Sbjct: 54 AIGIEALSRGAEMAVMVEHNPR-AAQCIRENLKITHLEDKATVMNCDVITALKRLEE--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY + + ++ + SAL D+ I+ E T M
Sbjct: 110 RQLVFDIIFMDPPYNQLLEKAVLEYLVHSALTHADTLIIAEASRETGM 157
>gi|404481983|ref|ZP_11017212.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404344953|gb|EJZ71308.1| RsmD family RNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 184
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+I+ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNIISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+ + GK
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAI-RCIRENLEHTKLIDKATILKGSFEANLEKIKTH-GK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
FD + + PPY + + + S L+ + + +++E +TD
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSTLIDEHTLVIIEEEFKTD 156
>gi|323453306|gb|EGB09178.1| hypothetical protein AURANDRAFT_58958 [Aureococcus anophagefferens]
Length = 186
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192
M V+ A F L S G A+ R R LD + G+GSVG+EA+SRG + FV++
Sbjct: 1 MGKVREALFSTLVSLG-VFAAPRRVRALDTFCGSGSVGVEALSRGAAAATFVDLS-RDAC 58
Query: 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQ 252
+V + N F DV +I + A G D FD +++TPPY V Y L +
Sbjct: 59 DVALRNARACAFDDVEAICATAEDALATPALH--GGDRRFDLVTLTPPYEEVSYADLADR 116
Query: 253 ISKSALVGKDSFIVVEYPLRTD----MLDTCGCLVKIKDRRFGRTHLAIYG 299
+++S L+ D +V EYP+ L + LV +++RR+GRT L Y
Sbjct: 117 VAESPLLNDDCVVVFEYPVELGSLPPKLGSRDQLVGLRNRRYGRTVLGFYA 167
>gi|302386344|ref|YP_003822166.1| methyltransferase [Clostridium saccharolyticum WM1]
gi|302196972|gb|ADL04543.1| methyltransferase [Clostridium saccharolyticum WM1]
Length = 183
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + +G + RP + +K F+++Q G P +LDL+SG+G+
Sbjct: 1 MRVIAGKARRLVLKTIEGQETRPTTDRIKETLFNMIQ--GDLPGCC----FLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG VE +P + + NL+ T D + + V T L R E GK
Sbjct: 55 IGIEALSRGAGLAVLVEQNPK-AAECIRENLKTTKLEDDAIVMNCDVMTGLGRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGCLVK-I 285
FD + + PPY + ++ ++ S L+ +D+ I+VE L T D L+ G +K I
Sbjct: 111 GHVFDLVFMDPPYQEGWEKRVLQYLADSPLIHEDTTIIVEAALETSFDYLEEMGYRIKRI 170
Query: 286 KDRR 289
KD +
Sbjct: 171 KDYK 174
>gi|147668815|ref|YP_001213633.1| putative methyltransferase [Dehalococcoides sp. BAV1]
gi|146269763|gb|ABQ16755.1| putative methyltransferase [Dehalococcoides sp. BAV1]
Length = 192
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASHAHVYCLDV----PKAMAF 107
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ K +D + PPY ++ ++ S L+G+++ + V + + + G L +
Sbjct: 108 LKKQ--YDVILADPPYRNQQIGEVLEKLGNSGLIGENTVMAVTHSAHLTLAECYGRLKML 165
Query: 286 KDRRFGRTHLAIYGPD 301
K+ R G + + IY D
Sbjct: 166 KEHRHGDSLITIYRKD 181
>gi|262068284|ref|ZP_06027896.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
gi|291378022|gb|EFE85540.1| RNA methyltransferase, RsmD family [Fusobacterium periodonticum
ATCC 33693]
Length = 182
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + + KG D RP +E VK + F I+ + +LDL+SG+GS
Sbjct: 1 MRIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSII------APYVENSVFLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG +E D + +I N++ GF D + V RA + +G
Sbjct: 55 ISLEAVSRGAKRAVMIEKDGEALK-YIIENIDNLGFTDRCRAYKNDV----VRAVEILGR 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY ++ I K+ ++ D I+ E+ L D+ D K +
Sbjct: 110 KKEKFDIIFMDPPYQDNITTKVLKAIDKADILADDGLIICEHHLFEDLDDNIASFRKTDE 169
Query: 288 RRFGRTHLAIY 298
R++ + L +
Sbjct: 170 RKYNKKILTFF 180
>gi|134102544|ref|YP_001108205.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
2338]
gi|133915167|emb|CAM05280.1| possible methyltransferase (methylase) [Saccharopolyspora erythraea
NRRL 2338]
Length = 208
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+SA L R LDLY G+G++G
Sbjct: 20 VAGSAGGRRIEVPPRG--TRPTSERVREALFSALESA----TELAGARVLDLYGGSGALG 73
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG + FVE D V +L N GF DV S+ +VET L A G+
Sbjct: 74 LEALSRGAAHATFVESDRRAV-QLLRRNASALGFRDV-SVAQGKVETVLASA---AGE-- 126
Query: 231 PFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY A + ++ ++ + DS +VVE R+ D L ++ +
Sbjct: 127 PFDVVLADPPYDVDAARLDQVLRSLAANGWTAPDSLVVVERSTRSGEPDWPAPLRALRTK 186
Query: 289 RFGRT--HLAIYGPDWAQKK 306
R+G T H A++ D A +
Sbjct: 187 RYGDTAVHWAVHEADAAGSQ 206
>gi|389584831|dbj|GAB67562.1| methylase [Plasmodium cynomolgi strain B]
Length = 299
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 15/205 (7%)
Query: 114 GKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA 173
GK + +++ SP RPMM VK + F IL G S LD++SG+G++GIE
Sbjct: 85 GKLKNRRIYSPDTY-TRPMMSKVKESLFSILSHLGIFSNS--TINVLDVFSGSGNLGIEC 141
Query: 174 ISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF-VGK 228
ISR V FV++ + N+ + N+ ++ + I L+ +F +G+
Sbjct: 142 ISRDIPHVTFVDLSLNSCKTIYENLKLCNINYS----YNQIIRADAMELLKCPLKFHMGQ 197
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVKIKD 287
F TPPY + Y L+ IS S L D + +EYP +ML ++ +++
Sbjct: 198 K--FHLAFFTPPYEQIVYSELIQNISNSELFHPDCLVFIEYPKEIEMLPQRVYNMIGLRN 255
Query: 288 RRFGRTHLAIYGPDWAQKKRKSEKK 312
R+FGRT+ A+Y + + K +E++
Sbjct: 256 RKFGRTYFALYVLNSSGKYLFAERR 280
>gi|163814172|ref|ZP_02205564.1| hypothetical protein COPEUT_00326 [Coprococcus eutactus ATCC 27759]
gi|158450621|gb|EDP27616.1| RNA methyltransferase, RsmD family [Coprococcus eutactus ATCC
27759]
Length = 189
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 24/199 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGT 166
+++V+ G+AR KL++ MD RP + +K F++L GC +LDL+SG+
Sbjct: 1 MMRVIAGRARSLKLVTVDSMDTRPTTDRIKETLFNVLSPDIPGCS-------FLDLFSGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFLERAE 223
G++GIEA+SRG FVE + + NL++T D V S V LER +
Sbjct: 54 GAIGIEALSRGAKRAVFVENGRKALE-CINKNLDFTKLRDGAQVLSTDAVSAVNTLERQK 112
Query: 224 QFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCG 280
FD + + PPY +++ +VLM ++S S +V D+ IVVE L T D L+ G
Sbjct: 113 DV------FDIIFMDPPYGRSLERDVLM-RLSGSDIVSDDTIIVVESDLDTEFDYLNDIG 165
Query: 281 C-LVKIKDRRFGRTHLAIY 298
+ KIK + + H IY
Sbjct: 166 FEIYKIKKYKTNK-HTFIY 183
>gi|317121771|ref|YP_004101774.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
gi|315591751|gb|ADU51047.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
Length = 199
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLRVPAGRQVRPTTDRVRQALFNILGPA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E VE D VV+ +L NL G R + F A+ G+
Sbjct: 55 LAIEALSRGAREALLVEADRRVVA-LLGRNLRELGLGPEQGAVVWRQDVFAAIAKLADGR 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD----TCGCLVK 284
FD + PPY ++ + + ++ ++VVE+ R + D G LV+
Sbjct: 114 R-VFDLILADPPYRQGVAPRVVQALGEGRVLAPGGWLVVEHDPREALPDRAGGEAGVLVQ 172
Query: 285 IKDRRFGRTHLAIY 298
+ RR+G T LA Y
Sbjct: 173 VDARRYGDTALAFY 186
>gi|270307618|ref|YP_003329676.1| methyltransferase [Dehalococcoides sp. VS]
gi|270153510|gb|ACZ61348.1| methyltransferase [Dehalococcoides sp. VS]
Length = 192
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW---LDLYSG 165
++++ G A+ K ++ P+ RP E+V+GA +L++ W LD+YSG
Sbjct: 1 MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAIAE--------DWSEVLDIYSG 52
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+GS+G+EA+SRG V FVE + +++ NLE G + ++ + V +A F
Sbjct: 53 SGSLGLEALSRGAGHVDFVEHE-RCCCDIIKQNLETIGCASQAHVYCLDV----PKAIAF 107
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ K +D + PPY ++ ++ S L+G+ + + V + + + G L +
Sbjct: 108 LKKQ--YDVILADPPYRNQQIGEVLEKLGNSGLIGESTVMAVTHSAHLTLAERYGRLKML 165
Query: 286 KDRRFGRTHLAIYGPD 301
K+ R G + +AIY D
Sbjct: 166 KEHRHGDSLIAIYRKD 181
>gi|408356968|ref|YP_006845499.1| methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727739|dbj|BAM47737.1| putative methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 189
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + + + + RP + VK + F+I+ G+ LDL++G+G
Sbjct: 1 MRVISGKLKGRSIETINDHSTRPTSDKVKESLFNII------GPYFSSGKVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG FV+ VV V+ NL + + ++ + + F RA + +GK
Sbjct: 55 LGIEAISRGADHAIFVDQQRRVVQ-VIKKNLASLNITEQAEVY--QNDAF--RALKALGK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
F+Y+ + PPY Y++LM +I K ++ D+ IV E+ + ++ D K +
Sbjct: 110 RKVKFNYIFIDPPYNKNVYQLLMEEIVKQNIISNDTIIVCEHDQKLNLADQIALFKKTRT 169
Query: 288 RRFG 291
++G
Sbjct: 170 EKYG 173
>gi|330837737|ref|YP_004412378.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
gi|329749640|gb|AEC02996.1| methyltransferase [Sphaerochaeta coccoides DSM 17374]
Length = 200
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + +L P G+ +RP M+ ++ + F IL S G +LDL+SG+G
Sbjct: 1 MRITGGRYRGRTILCPPGV-IRPAMDRMRESLFSILGSLDGHS-------FLDLFSGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
VGIEA SRG VH +EMD + +V++ N+ + + F+ A +F+
Sbjct: 53 VGIEAASRGAEPVHLIEMDK-LKKDVILKNISFV---------ESPIRLFMADALRFIRA 102
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML--DTCGCLVKI 285
+ + PP+ L ++ S+++ ++ YP + + G LV
Sbjct: 103 SKNTYSIIYADPPFPRNGKVRLAQAVADSSVLEDGGLFIIHYPAEENAQWPQSIGNLVFT 162
Query: 286 KDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT 317
+R +GR+HL Y D ++++ E +T
Sbjct: 163 DERVYGRSHLRFYRKDASRQEAMQETSQEAIT 194
>gi|334340289|ref|YP_004545269.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
gi|334091643|gb|AEG59983.1| methyltransferase [Desulfotomaculum ruminis DSM 2154]
Length = 184
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R + L SPKGM RP + V+ A F+IL + +LDL+SGTG+
Sbjct: 1 MRIIGGLVRGRNLKSPKGMSTRPTSDRVREALFNILSP------RVSGSYFLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
V IEA+SRG VE D ++SN+ + NL T +V ++ T R + L
Sbjct: 55 VAIEALSRGAERAVMVEKDRGTAGIILSNLKLCNL--TEKAEVLNLDTNRAISVL----- 107
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ PFD + + PPY ++EV M Q+ + L+ + +VVE D G L
Sbjct: 108 -AARKVPFDLIFIDPPYKK-NFEVPTMEQVQRFDLLVDNGILVVESDKNDLPPDDVGKLT 165
Query: 284 KIKDRRFGRTHLAIYGPD 301
+ ++G T L Y D
Sbjct: 166 AYRREKYGDTALTFYRYD 183
>gi|435853930|ref|YP_007315249.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
gi|433670341|gb|AGB41156.1| RNA methyltransferase, RsmD family [Halobacteroides halobius DSM
5150]
Length = 184
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + K+L S DVRP + K A F+IL + R LDLY+G G
Sbjct: 1 MRIIAGKNKGKRLKSLDRRDVRPTSDRTKEALFNIL------GPDVVGTRCLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG +EV F+E + ++ + N+ + D S + V L R
Sbjct: 55 LGIEAISRGANEVTFIEQNKQ-IAKTIDQNIASVSYQDQSKVIVDDVLKALRRLR----- 108
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F+ + + PPY ++ Y + +IS+ L+ I+VE+ + D LD V IK+
Sbjct: 109 -GHFELIFMDPPYKEIELYTKTLDRISQYNLLHPTGIIIVEHQAKAD-LDWPADYVVIKE 166
Query: 288 RRFGRTHLAI 297
R +G++ L +
Sbjct: 167 RNYGKSTLTL 176
>gi|392940862|ref|ZP_10306506.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
gi|392292612|gb|EIW01056.1| RNA methyltransferase, RsmD family [Thermoanaerobacter siderophilus
SR4]
Length = 184
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + ++ ++ ++ KD I+ E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKKDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|119953003|ref|YP_945212.1| methyltransferase [Borrelia turicatae 91E135]
gi|119861774|gb|AAX17542.1| methyltransferase [Borrelia turicatae 91E135]
Length = 181
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + K+ PK VRP+M +V+ A F I + + +LD+++GTG
Sbjct: 1 MHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIFLN------QILGSNFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + H V+ + + NVLI N E + + + F +AE F+ K
Sbjct: 55 MSLEALSRGANLAHLVDCNKFS-KNVLIKNFE---------VVSEPYKFFFRKAELFLKK 104
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D +D++ + PP+ E L+ IS++ + KD+ I++ YP R ++ + L K
Sbjct: 105 SDLFYDFIYLDPPFGYSFKENLLRIISENESLNKDAKIIIHYPSRENLDNNILRLSKYDF 164
Query: 288 RRFGRTHLAIY 298
R++G + L +
Sbjct: 165 RKYGGSKLDFF 175
>gi|357632891|ref|ZP_09130769.1| methyltransferase [Desulfovibrio sp. FW1012B]
gi|357581445|gb|EHJ46778.1| methyltransferase [Desulfovibrio sp. FW1012B]
Length = 202
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 18/212 (8%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQ 224
GSVGIEA+SRG S+ FVE P V+ VL NL G D + + V L R
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGLAPDEAKVVEADVARALPR--- 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC--GCL 282
G+ FD +++ PPY +A + + L+ IV E D+ DT L
Sbjct: 113 LAGQT--FDLVAIDPPYGLGLLPPTLAGLVANGLLAPGGVIVAEIEAGADLPDTAVPDTL 170
Query: 283 VKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 314
+ DR +G+T + ++ P E P
Sbjct: 171 ECLTDRLYGQTRIILWTPILPASPSTPEPSTP 202
>gi|373106314|ref|ZP_09520617.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
gi|371652689|gb|EHO18097.1| RsmD family RNA methyltransferase [Stomatobaculum longum]
Length = 189
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G + RP + +K F++LQ+ P S R+LDL+ G+G
Sbjct: 1 MRVIAGNARRLLLKTLPGDETRPTTDRIKETLFNMLQAE--IPGS----RFLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE +P + ++ NLE T D + + T+ + R G+
Sbjct: 55 IAIEALSRGASAAVIVEKNPK-AARIIRENLEHTHLDDRAELLTIDASAAITR---LAGR 110
Query: 229 D-GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD--MLDTCG-CLVK 284
+ FD + + PPY + +AQ+ +AL+ D+ ++VE + D +T G ++K
Sbjct: 111 ESAAFDLIFLDPPYGLGLEDRALAQLLSTALLQADTLLIVETDIEADPTRFETLGYSVLK 170
Query: 285 IKD 287
+K+
Sbjct: 171 VKE 173
>gi|160879469|ref|YP_001558437.1| methyltransferase [Clostridium phytofermentans ISDg]
gi|160428135|gb|ABX41698.1| methyltransferase [Clostridium phytofermentans ISDg]
Length = 185
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 20/170 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L +P+G+D RP + K F+ILQ +L +LDL+SG+G+
Sbjct: 1 MRVIAGKARRTLLKTPEGLDTRPTTDRTKETLFNILQ------GNLADSCFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNVLIPNLEWTG-FLDVSSIHTVRVETFLERAE 223
+GIEA+SRG S F + V +N+ ++E +I T+ +A
Sbjct: 55 IGIEALSRGASFAVFSDTSKTAVDCIKANIKTTHMEGQAEVFQKDAISTI-------KAM 107
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
+ GK F + + PPY ++++ + S ++ +D+ IVVE L T
Sbjct: 108 EVAGK--VFQIIFMDPPYNCDHEKIILEMLDHSNIIDEDTIIVVEASLAT 155
>gi|402312210|ref|ZP_10831140.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
gi|400370871|gb|EJP23853.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium ICM7]
Length = 184
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------ELYNATFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T +D ++I E LE+ + GK
Sbjct: 55 IGIEALSRGAKEAYFCDIDREAI-RCIRENLEHTKLIDKATILKGSFEANLEKIKTH-GK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
FD + + PPY + + + S L+ + + +++E +TD
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSTLIDEHTLVIIEEEFKTD 156
>gi|315917592|ref|ZP_07913832.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059117|ref|ZP_07923602.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313684793|gb|EFS21628.1| methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313691467|gb|EFS28302.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
Length = 182
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL + KG + RP + VK A F ++ L +LDL+SG+G+
Sbjct: 1 MRIIAGEARSRKLKTRKGFETRPTLANVKEALFSMI------APHLEDSVFLDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ GF D + + F RA + + +
Sbjct: 55 IALEALSRGAKRAVMIEKDTEAL-RFIIENVNALGFQD--RCRAYKNDVF--RAIEILAR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY ++ I K ++G++ I+ E+ +M + G KI +
Sbjct: 110 KGEKFSIIFMDPPYQDNVCTKVLEHIEKFEILGEEGIIICEHHAFEEMAERVGSFQKIDE 169
Query: 288 RRFGRTHLAIYG 299
R++ + + Y
Sbjct: 170 RKYQKKVITFYA 181
>gi|376261484|ref|YP_005148204.1| RsmD family RNA methyltransferase [Clostridium sp. BNL1100]
gi|373945478|gb|AEY66399.1| RNA methyltransferase, RsmD family [Clostridium sp. BNL1100]
Length = 184
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + +GM+ RP + VK F+I+ A PG LDL++GT
Sbjct: 1 MLRVISGSAKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYMPGSNILDLFAGT 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG + F ++ ++++ NL+ T +D S + + L++ Q
Sbjct: 54 GSLGIEALSRGANSAVFCDLSEQ-SADIITRNLQHTKLIDKSEVFLGEAQIILKKLSQLS 112
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K FD + + PPY ++ + ++ + I VE + + G L +
Sbjct: 113 KK---FDIIFLDPPYKKEIVPGILQDLENYGVLDEKVLISVETDIEDQLPKEIGTLCVSR 169
Query: 287 DRRFGRTHLAIY 298
+ +G+T L Y
Sbjct: 170 QQIYGKTKLTFY 181
>gi|167765563|ref|ZP_02437627.1| hypothetical protein CLOSS21_00057 [Clostridium sp. SS2/1]
gi|167712748|gb|EDS23327.1| RNA methyltransferase, RsmD family [Clostridium sp. SS2/1]
gi|291559029|emb|CBL37829.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SSC/2]
Length = 185
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 10/169 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGST----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+ FD++ + PPY E +++ I +S++ +D+ ++VE L T++ D
Sbjct: 111 NVTFDHIFMDPPYKKGFEEEVLSIIDRSSICTEDTVVIVESSLDTEIPD 159
>gi|197301676|ref|ZP_03166746.1| hypothetical protein RUMLAC_00402 [Ruminococcus lactaris ATCC
29176]
gi|197299116|gb|EDY33646.1| RNA methyltransferase, RsmD family [Ruminococcus lactaris ATCC
29176]
Length = 189
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +G+D RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSARSLKLKTLEGIDTRPTTDRIKETLFNMI------APYLYDCEFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + + NL++T T V L + E
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAME-CIKENLKFTRLEKKGITLTKDVLNALYQLEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D FDY+ + PPY + ++ ++ S+LV +D+ I+VE L TD
Sbjct: 110 DKVFDYIFMDPPYDQELEKQVLKYLAGSSLVYEDTVIIVEASLNTDF 156
>gi|331091196|ref|ZP_08340037.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404643|gb|EGG84182.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_46FAA]
Length = 189
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG A+R +L + G++ RP + +K F+++ L +LDL+SG+G
Sbjct: 1 MRVIGGSAKRLQLKTLDGLETRPTTDRIKETLFNMI------SPYLCDCMFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + + NL +T + V T L+R E
Sbjct: 55 IGIEALSRGAKEAVFVENNPKAMQYIK-ENLAFTKLDKKAVTMQTDVITALKRLE----G 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
FDY+ + PPY E ++ +++S LV +D+ I+VE T+
Sbjct: 110 TTQFDYIFMDPPYAKGLEEQVLEYLAESDLVNEDTVIIVEAAKETEF 156
>gi|429761489|ref|ZP_19293914.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
gi|429183742|gb|EKY24783.1| RNA methyltransferase, RsmD family [Anaerostipes hadrus DSM 3319]
Length = 185
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 10/169 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGST----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+ FD++ + PPY E +++ I +S++ +D+ ++VE L T++ D
Sbjct: 111 NVTFDHIFMDPPYKKGFEEEVLSIIDRSSICTEDTVVIVESSLDTEIPD 159
>gi|444432145|ref|ZP_21227304.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
gi|443886974|dbj|GAC69025.1| hypothetical protein GS4_20_00900 [Gordonia soli NBRC 108243]
Length = 188
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 15/194 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ ++L P RP + V+ A F+IL+S L R LDLY+G+G
Sbjct: 1 MTRIIAGRHGGRRLAVPDD-GTRPTSDRVREAVFNILES----RIDLDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + V+ + V+ NL G DV S+ T RV A+ G
Sbjct: 56 ALGIEALSRGAASAALVDARRRATA-VIAKNLATVGAQDVGSVVTRRV------ADHLAG 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSA--LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
FD + V PPY +D +VL A++ A +G D +VVE RT + G L +
Sbjct: 109 DAQIFDVVFVDPPYD-LDGQVLAAELEVVAGRWLGADGIVVVERSARTPAVAVPGDLAVL 167
Query: 286 KDRRFGRTHLAIYG 299
++ +G T + + G
Sbjct: 168 VEKVYGDTRVTVLG 181
>gi|317498519|ref|ZP_07956813.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894212|gb|EFV16400.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 185
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 10/169 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ KL + +GM+ RP + +K F+++Q P S +LDL+SG+G
Sbjct: 1 MRVVAGSAKSLKLKTIEGMETRPTQDRIKETLFNMIQY--DIPGST----FLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +FVE + + NL +T + + V + + + E K
Sbjct: 55 IGIEALSRGAKEAYFVEKAKPAL-RCIRENLRYTKLDKKAQVLATDVNSAIRQLET---K 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+ FD++ + PPY E +++ I +S++ +D+ ++VE L T++ D
Sbjct: 111 NVTFDHIFMDPPYKKGFEEEVLSIIDQSSICTEDTVVIVESSLDTEIPD 159
>gi|333978692|ref|YP_004516637.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822173|gb|AEG14836.1| methyltransferase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 187
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A++ +L P+G RP + VK + F+IL P S +LDLY+GTG+
Sbjct: 1 MRVIAGVAKKSRLKIPRGWSGRPTADRVKESLFNILGPR--IPGS----HFLDLYAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + V FVE D V ++ NL G + + + + + FL Q G+
Sbjct: 55 VGIEALSRGAARVVFVERDKRAV-KIIRDNLVHVGLAERAEV--LAQDVFLG-LRQLSGQ 110
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PPY ++ L A I + L + +V E R + G LV+ +
Sbjct: 111 Q--FDVVFLDPPYGQGLELPTLEA-IDRHGLPARGGIVVAESSKRQALPGQVGRLVQYRQ 167
Query: 288 RRFGRTHLAIYGPDWA 303
+ G T L+ Y P A
Sbjct: 168 HQVGDTMLSFYQPGIA 183
>gi|111225167|ref|YP_715961.1| RNA methylase [Frankia alni ACN14a]
gi|111152699|emb|CAJ64442.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Frankia alni ACN14a]
Length = 190
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + +++GG A ++LL P G RP + + F+ L + P + R DLY
Sbjct: 2 TGASMTRIIGGTAGGRQLLVPAGRATRPTSDRAREGLFNTLSTCVDLPGA----RVADLY 57
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+G+VG+EA+SRG + V+ DP V L N+ G I + + R
Sbjct: 58 AGSGAVGLEALSRGAAHALLVDHDPAAV-RALRRNVTALGLSGAEII-----QASVARVV 111
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
Q D P+D M + PPY D E+ ++A++ SA + D VVE R+ +
Sbjct: 112 QNTSGD-PYDVMFLDPPYAMSDVELGEVLAKLRGSAWLAADGVCVVERSHRSGPVAWPDG 170
Query: 282 LVKIKDRRFG 291
L ++DRR+G
Sbjct: 171 LCALRDRRYG 180
>gi|339627491|ref|YP_004719134.1| methyltransferase [Sulfobacillus acidophilus TPY]
gi|379008136|ref|YP_005257587.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
gi|339285280|gb|AEJ39391.1| putative methyltransferase [Sulfobacillus acidophilus TPY]
gi|361054398|gb|AEW05915.1| methyltransferase [Sulfobacillus acidophilus DSM 10332]
Length = 183
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 24/202 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A +L++P+GM RP E V+ A F+I Q + R+LDLY G+G+
Sbjct: 1 MRIVGGQASGHRLVAPRGMSTRPTGERVREALFNIWQR------RIESARFLDLYGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG E VE D + N+ GF RV AEQ V
Sbjct: 55 MALEAVSRGAREAVVVEPDK-KARAAIRHNIRHLGF-------DPRVRLVAMTAEQAVNL 106
Query: 228 ---KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+D FD + PP+ ++ +++ +AL+G +V+E+ + D + G L++
Sbjct: 107 WADEDQRFDVVFCDPPWAQGVSGIVRSRL--AALIGSTGEVVIEHAAKADPGEVPG-LLR 163
Query: 285 IKDRRFGRTHLAIYGPDWAQKK 306
+ RR+G T + Y WA+++
Sbjct: 164 GETRRYGDTAVTRY---WAERQ 182
>gi|70726830|ref|YP_253744.1| hypothetical protein SH1829 [Staphylococcus haemolyticus JCSC1435]
gi|68447554|dbj|BAE05138.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 183
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ LQ G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKVLESLEGRNTRPTMDKVKEGIFNSLQEVHGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ D S ++ + L+ + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIQANLKQLDLRDQSEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FDY+ + PPY + + QI++ L+ ++ I+ E+ + ++T G V IK
Sbjct: 109 EIQFDYIFLDPPYNKGLIDKALEQIAEFNLLKENGIIICEFS-NHEQINTNGFKV-IKQY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|348026193|ref|YP_004765998.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
gi|341822247|emb|CCC73171.1| RNA methyltransferase [Megasphaera elsdenii DSM 20460]
Length = 185
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR + L SPKGM RP ++ + + F+IL+S+GG LR LD+++GTG+
Sbjct: 1 MRIISGSARGRVLKSPKGMLTRPTLDRTRESLFNILESSGG----LRGAAVLDIFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F++ ++ N GF D + + L R + G+
Sbjct: 57 LGLEALSRGAASAVFID---HYTQQLIRQNAALCGFADCVEVLRLNSAKALARLQ---GR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
FDY+ PPY +A I + L+ I++EY
Sbjct: 111 --KFDYIFADPPYNKNLVNDTIALIGEYDLLAPGGLILMEY 149
>gi|398350405|ref|YP_006395869.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
gi|390125731|gb|AFL49112.1| ribosomal RNA small subunit methyltransferase D [Sinorhizobium
fredii USDA 257]
Length = 186
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP-NLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QGRAKIFRRDATDLGP 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVK 284
VG PF + V PPY E + Q + + + +V+E R D+ G
Sbjct: 110 VGTIEPFHLVFVDPPYAKGLGERALEQAAAGGWLVPGALVVLEE--RADVRPQLSGAFEP 167
Query: 285 IKDRRFGRTHLAIY 298
+ DR FG T + Y
Sbjct: 168 LDDRAFGDTRMHFY 181
>gi|225572198|ref|ZP_03781062.1| hypothetical protein RUMHYD_00492 [Blautia hydrogenotrophica DSM
10507]
gi|225040370|gb|EEG50616.1| RNA methyltransferase, RsmD family [Blautia hydrogenotrophica DSM
10507]
Length = 183
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKARR L + G++ RP + +K F+ILQ L R+LDL+SG+G+
Sbjct: 1 MRVIAGKARRLPLKTVPGLETRPTTDRIKETLFNILQP------KLLDSRFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F+E P V + NL +T + + + ++ + F + Q G
Sbjct: 55 IGIEALSRGAALAVFIEKSPKAV-GCIKENLAFTRLQEQARV--IKTDVF-QGLRQLEG- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ PFD + + PPY + + S+L+ + + ++ E L TD
Sbjct: 110 EKPFDCIFMDPPYGKGLERQVFELLQTSSLMNEKTLVIAEASLDTDF 156
>gi|336434857|ref|ZP_08614577.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
gi|336003567|gb|EGN33650.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_4_56FAA]
Length = 189
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 13/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISPG------LFDSMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG 227
+GIEA+SRG E FVE + ++ V NL++T LD I + V T L + E
Sbjct: 55 IGIEALSRGAKEAVFVEQNSKAMACVR-DNLKYTK-LDRKGITLTKDVMTALYQLEG--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+ FDY+ + PPY +M +S+S+LV +D+ I++E TD
Sbjct: 110 -EKVFDYIFMDPPYHMGLERRVMEYLSESSLVYEDTVIIIEAAKETD 155
>gi|326389527|ref|ZP_08211094.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
gi|325994532|gb|EGD52957.1| methyltransferase [Thermoanaerobacter ethanolicus JW 200]
Length = 184
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGDEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + ++ ++ ++ +D I+ E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKEDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|308273139|emb|CBX29742.1| hypothetical protein N47_F14370 [uncultured Desulfobacterium sp.]
Length = 187
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
L+V+ G + +KL S G+ +RP ++ + F+IL Q G LDL++GT
Sbjct: 4 LRVISGDLKGRKLFSINGLKIRPTSGRLRESIFNILSDQVVGSV--------VLDLFAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++GIEA+SRG S F++ D +S + I N+ G + S+I + L+ ++
Sbjct: 56 GAMGIEALSRGASFAAFIDKDKEAISTI-IKNINICGLAERSTIAKFDI---LKDINRYA 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K + + + PPY + +SKS ++ ++ +VVE+ LR + +
Sbjct: 112 NKLTAANLVFIDPPYNRNLITPALISLSKSRILKNNASLVVEHDLREALFENISGYAITD 171
Query: 287 DRRFGRT 293
RR+G+T
Sbjct: 172 QRRYGKT 178
>gi|254490497|ref|ZP_05103683.1| putative methyltransferase [Methylophaga thiooxidans DMS010]
gi|224464241|gb|EEF80504.1| putative methyltransferase [Methylophaga thiooxydans DMS010]
Length = 196
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 16/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG R +KL P+ +RP + V+ F+ LQ G R LDL++G+G+
Sbjct: 13 LRIIGGIWRGRKLGFPEVEGLRPTGDRVRETVFNWLQPILG------DSRCLDLFAGSGA 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA SRG EV VE D +L NL ++++ + + F RAEQF+
Sbjct: 67 LGLEAASRGAGEVVLVETDR-SAYQLLQSNL--------TALNASQCQLFHGRAEQFLAS 117
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY + + + +S+ L+ + I +EYP R DM D +++
Sbjct: 118 QKQAFDVVFIDPPYQSNMWTQIAQLLSERHLLNDGARIYLEYPRRQDMPDLPSSWHLLRE 177
Query: 288 RRFGRTHLAIY 298
++ G ++
Sbjct: 178 KQAGDVKYCLF 188
>gi|345017794|ref|YP_004820147.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033137|gb|AEM78863.1| methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 184
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLDGSEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVAELNLIPFAKILHRDVLKVIEILDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + ++ ++ ++ +D I+ E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLAEKTLIKLGEAKVLKEDGIIIAEHHKNDKIRERYGNLVKIR 168
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|313887956|ref|ZP_07821635.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846122|gb|EFR33504.1| RNA methyltransferase, RsmD family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 188
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL++PKG+D RP + VK + F+IL + LDL+ G+G+
Sbjct: 1 MRIISGNRRGLKLIAPKGLDTRPTEDRVKESVFNILGQ------NFFDVTVLDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
GIE +SRG + +FV+ + V NL+ D + +E L +A + +
Sbjct: 55 NGIEFLSRGAEKAYFVDKSKEAIDCVK-KNLDKAKLTD----QAIVIENHLNQAMKNL-- 107
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D FDY+ + PP+ D Y+ I + ++ + ++VEY +L G V+IK+
Sbjct: 108 DTEFDYIYMDPPFERRDLYKKAFKLIREHRILKPNGKLIVEYNTDKPLLIGEG-FVEIKN 166
Query: 288 RRFGRTHLAIYGPD 301
+++G T ++I G D
Sbjct: 167 KKYGNTSISICGWD 180
>gi|297617081|ref|YP_003702240.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
gi|297144918|gb|ADI01675.1| methyltransferase [Syntrophothermus lipocalidus DSM 12680]
Length = 190
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 17/204 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KKL +P G RP+ + +K A F++L GG + R LD+++G+G
Sbjct: 1 MRVISGTARGKKLKAPPGFITRPLTDRIKEALFNVL---GG---EIEDARLLDVFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ-FVG 227
VGIEA+SRG S V FVE P + + NL+ F S + ++ F RA + VG
Sbjct: 55 VGIEALSRGASYVVFVEKHPAAIRTIY-ANLDGCRF--ASGFEVLGMDVF--RALRILVG 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQ-ISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + V PP+ + V + Q + + L+ + +V+ P + + + + + +
Sbjct: 110 RGKVFDVIYVDPPFDQPEIFVQVLQALDNNRLLAERGTLVIRVPRKHALPERLAFIAQFR 169
Query: 287 DRRFGRTHLAIYGPDWAQKKRKSE 310
+G + L IY + Q++R+ E
Sbjct: 170 IDVYGESAL-IY---YRQREREEE 189
>gi|340756654|ref|ZP_08693259.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251833917|gb|EES62480.1| RsmD family RNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 182
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + V RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEAL-KYIIENVNSLGYEDRCRAYKNDV----LRAVEILGR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ I K+ ++ + I+ E+ + ++ D G K +
Sbjct: 110 KGEKFDIIFMDPPYKEEVCTKVIKAIEKNKILAEGGLIISEHHVFEELEDEIGEFKKADE 169
Query: 288 RRFGRTHLAIY 298
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|387818717|ref|YP_005679064.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
gi|322806761|emb|CBZ04330.1| ribosomal RNA small subunit methyltransferase D [Clostridium
botulinum H04402 065]
Length = 185
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + LE +F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSALE---EFASK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKGLLNKEGLIVTKIDSSEEIYEGTERIKLFEHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|336426753|ref|ZP_08606761.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010393|gb|EGN40376.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 185
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR L +P+G D RP + +K F+ILQ G P S+ ++DL SG+G
Sbjct: 1 MRVIAGEARSLPLKTPEGQDTRPTTDRIKETLFNILQ--GDIPGSI----FVDLCSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG +F E + + + NL + F D + + V + L +
Sbjct: 55 IGIEAISRGAKRAYFAE-NAVKAAKCIQDNLSFAKFTDRAVLLKQDVVSALGGIHE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D + + PPY A E +++ +S+++ V +D+ I++E L D
Sbjct: 110 -KEVDVIFMDPPYQAGLEEPVLSALSRASYVTEDTLIIIEAELNKDF 155
>gi|84999340|ref|XP_954391.1| hypothetical protein [Theileria annulata]
gi|65305389|emb|CAI73714.1| hypothetical protein, conserved [Theileria annulata]
Length = 346
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 51/261 (19%)
Query: 68 LDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRL------------------- 108
+ +E + E PK+R+ K KL +S ++ +T ++L
Sbjct: 85 FNHEEVIEEKQPKSRKNKLNYTQKLNISRPINKNVKTRYKLQQFPKKQGVTKDGSYKFCS 144
Query: 109 -LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++ GG R +KL P + VRP+M VK + F+ L S + +DLY GTG
Sbjct: 145 NLRICGGAIRGRKLCIPP-IYVRPVMSRVKVSVFNYLNSLNMFSID-KETNVIDLYCGTG 202
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFV 226
S+G+E++S G S+ FV++ + V + N + G+ D I +R ++ L +
Sbjct: 203 SLGLESLSYGSSKCTFVDISLKCLKAVSL-NSQKCGYQDKCRI--IRCDSMELISSPHLY 259
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD M V+PPY V Y ++ +++ L IK
Sbjct: 260 NINEKFDLMFVSPPYEEVVYSEILETVNER-------------------------LFGIK 294
Query: 287 DRRFGRTHLAIYGPDWAQKKR 307
++++GRT +AIY D + K+
Sbjct: 295 NKKYGRTVIAIYVHDPSSNKQ 315
>gi|170761383|ref|YP_001787809.1| methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169408372|gb|ACA56783.1| RNA methyltransferase, RsmD family [Clostridium botulinum A3 str.
Loch Maree]
Length = 185
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + T L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYTAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKELLNKEGLIVTKIDSSEEIYEGTERVKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|203284126|ref|YP_002221866.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
gi|201083569|gb|ACH93160.1| N6-adenine-specific methylase [Borrelia duttonii Ly]
Length = 209
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 28 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S VH V+ + + NVLI N + I + F +AE F+
Sbjct: 82 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFD---------IVNEPYKFFFTKAEFFLA 131
Query: 228 K-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K D +D + + PP+ + L+ ISK+ + K++ I++ YP R ++ + L K
Sbjct: 132 KRDLFYDLIYLDPPFNYPLKKNLLEIISKNKSLNKNAKIIIHYPARENLDNNILRLSKYD 191
Query: 287 DRRFGRTHLAIY 298
R++G + L +
Sbjct: 192 FRKYGGSRLDFF 203
>gi|203287664|ref|YP_002222679.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
gi|201084884|gb|ACH94458.1| N6-adenine-specific methylase, putative [Borrelia recurrentis A1]
Length = 198
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 17 LMRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QISGINFLDVFTGTG 70
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S VH V+ + + NVLI N + I + F +AE F+
Sbjct: 71 IMSLEALSRGASLVHLVDYNKF-SKNVLIKNFD---------IVNEPYKFFFTKAEFFLA 120
Query: 228 K-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K D +D + + PP+ + L+ ISK+ + K++ I++ YP R ++ + L K
Sbjct: 121 KRDLFYDLIYLDPPFNYPLKKNLLEIISKNKSLNKNAKIIIHYPARENLDNNILRLSKYD 180
Query: 287 DRRFGRTHLAIY 298
R++G + L +
Sbjct: 181 FRKYGGSRLDFF 192
>gi|312111788|ref|YP_003990104.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|336236171|ref|YP_004588787.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
gi|311216889|gb|ADP75493.1| methyltransferase [Geobacillus sp. Y4.1MC1]
gi|335363026|gb|AEH48706.1| methyltransferase [Geobacillus thermoglucosidasius C56-YS93]
Length = 196
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 8 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V + N+E + + I+ ERA + + K
Sbjct: 62 LGIEALSRGLDRVIFVDHDAKAVQTIK-KNVETCRLSEQAEIY----RNDAERALKAIVK 116
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + +++ I + L+ +D +V E+ D+ + G LVK K
Sbjct: 117 RGLRFHLIFLDPPYKEQKLQSILSFIDEHGLLEEDGAVVAEHSSEMDLAEHIGRLVKWKH 176
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 177 EVYGITAISIY 187
>gi|302337839|ref|YP_003803045.1| methyltransferase [Spirochaeta smaragdinae DSM 11293]
gi|301635024|gb|ADK80451.1| methyltransferase [Spirochaeta smaragdinae DSM 11293]
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R +K+ PKG+ +RP M+ ++ + F IL G +LD++SG+G
Sbjct: 1 MRITGGTYRGRKVRCPKGV-IRPAMDRMRESMFSILGPLDGYS-------FLDIFSGSGL 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA SRG V VE D +L N+E S+ + E+FL R
Sbjct: 53 VGIEAASRGAEPVVLVENDRGKRETIL-ENIEMVE--SKISLVMMSAESFLRRGR----- 104
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PP+ L+ +S S+L+ +++ +++ +P D G L+ R
Sbjct: 105 -GSFDIIYLDPPFPMPGKIDLIKVLSDSSLITEETKVLIHHPAEEQWPDEVGTLICYDTR 163
Query: 289 RFGRTHLAIYGPD 301
R+GR+ L + P+
Sbjct: 164 RYGRSLLRFFRPE 176
>gi|262198143|ref|YP_003269352.1| methyltransferase [Haliangium ochraceum DSM 14365]
gi|262081490|gb|ACY17459.1| methyltransferase [Haliangium ochraceum DSM 14365]
Length = 191
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 7/190 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG ++LL+P G RP + V+ A F+IL G PA R LD+ +G+G
Sbjct: 1 MRIIGGHLGGRRLLAPPGDGTRPTSDRVREALFNIL---GPPPAG---ARVLDVCAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V F+E P + L N+ G ++ R +
Sbjct: 55 LGLEALSRGAEAVCFIERAPAAL-RALRNNIAALGVGGACTVVRGEACAIAGRWARAESA 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD++ + PPY + ++ + SAL+G VVE+ R D G LV+ R
Sbjct: 114 PAAFDWIFLDPPYRSDVSAQMLNILGASALLGDGGCAVVEHDRRLAPEDRYGELVRGDRR 173
Query: 289 RFGRTHLAIY 298
R+G T L+ Y
Sbjct: 174 RYGDTELSFY 183
>gi|423720704|ref|ZP_17694886.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
gi|383366057|gb|EID43348.1| RNA methyltransferase, RsmD family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 189
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVISGKCKGRRLQAVPGMSTRPTTDKVKEAIFNMI------GPYFSGGMGLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V + N+E + + I+ ERA + + K
Sbjct: 55 LGIEALSRGLDRVIFVDHDAKAVQTIK-KNVETCRLSEQAEIY----RNDAERALKAIVK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + +++ I + L+ +D +V E+ D+ + G LVK K
Sbjct: 110 RGLRFHLIFLDPPYKEQKLQSILSFIDEHGLLEEDGAVVAEHSSEMDLAEHIGRLVKWKH 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 EVYGITAISIY 180
>gi|187778911|ref|ZP_02995384.1| hypothetical protein CLOSPO_02506 [Clostridium sporogenes ATCC
15579]
gi|187772536|gb|EDU36338.1| RNA methyltransferase, RsmD family [Clostridium sporogenes ATCC
15579]
Length = 185
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + LE +F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSALE---EFARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ KD IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMENIDKKELLDKDGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|257125253|ref|YP_003163367.1| methyltransferase [Leptotrichia buccalis C-1013-b]
gi|257049192|gb|ACV38376.1| methyltransferase [Leptotrichia buccalis C-1013-b]
Length = 184
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGVLKNRRIKSREGRETRPTLERIKEAIFSII------GEKVADAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V EA+SRG +E D + ++I N+ G + + V + E K
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLGIEEKCRAYKNDVSRAI---EILARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + +IS+ L+ +D I+ E+ M D G VK +R
Sbjct: 111 NEIFDIIFLDPPYKENISTKTIEKISEENLLERDGIIISEHSTYEKMADKIGNFVKYDER 170
Query: 289 RFGRTHLAIY 298
+ + ++ Y
Sbjct: 171 DYNKKVVSFY 180
>gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47_FAA]
gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
1_7_47FAA]
Length = 185
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
++V+ G ARR L + GMD RP + +K F++LQ GC ++LDL+SG+G
Sbjct: 1 MRVIAGSARRLLLKTVDGMDTRPTTDRIKETLFNMLQPQIPGC-------QFLDLFSGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG +E +P V+ + NL T + + + V T L+R E G
Sbjct: 54 AIGIEALSRGADLAVMIENNPQAVA-CIRENLGTTRLEERAVVMACDVLTGLKRLE---G 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY E ++ ++ S +V ++ V+E TD
Sbjct: 110 HNYRFDLVFMDPPYHHGYEEQVLGYLAHSPMVSDETVFVIEASRETDF 157
>gi|404493263|ref|YP_006717369.1| DNA methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77545321|gb|ABA88883.1| DNA methyltransferase, putative [Pelobacter carbinolicus DSM 2380]
Length = 194
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 6/190 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KL KG ++RP + V+ A F LQS G + L + LDL++GTG+
Sbjct: 1 MRIISGSAKGRKLRQFKGQNIRPTTDRVREALFSSLQSRLGSFSEL---KVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ P V+ V+ N++ G D + + F+ + + K
Sbjct: 58 LSLEALSRGAAYAVLVDQSPNSVA-VIAENIKTCGMQDRTRLCRTSASIFVNQNQ--AAK 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D PFD + + PPY + I ++ L+ I VE + + L+++ +
Sbjct: 115 DAPFDLIFLDPPYNKNLVTPTLNGIVENKLLSGCGIICVEAARKDPVPSEVPGLIQLDRK 174
Query: 289 RFGRTHLAIY 298
+G T ++ +
Sbjct: 175 EYGSTAVSFF 184
>gi|320354627|ref|YP_004195966.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
gi|320123129|gb|ADW18675.1| methyltransferase [Desulfobulbus propionicus DSM 2032]
Length = 195
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG AR +KLL+P+ +RP + V+ A F+IL S ++ R LDL++GTG+
Sbjct: 1 MRITGGSARGRKLLTPRSDRIRPTCDRVREALFNILGS------RIKGARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW------TGFLDVSSIHTVRVETFLERA 222
+G EA+SRG FV+ ++ NL FL + + + R
Sbjct: 55 IGTEALSRGAVFALFVDRS-LEAGRLIEANLRACLSHPRAAFLQLDLAESTSLHLLPARM 113
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+Q V + FD + + PPY + + + ++ +VVE R + +T G L
Sbjct: 114 KQPVER---FDLVFMDPPYQKNLAHRALTMVEPADILAAGGLVVVEEHHRVSLPETVGTL 170
Query: 283 VKIKDRRFGRTHLAIY 298
V RR+G T L +Y
Sbjct: 171 VLDDHRRYGETGLWLY 186
>gi|374316432|ref|YP_005062860.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352076|gb|AEV29850.1| RNA methyltransferase, RsmD family [Sphaerochaeta pleomorpha str.
Grapes]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GGK R + +L P G+ +RP M+ ++ + FDIL +L WLDL++G+G
Sbjct: 1 MRVTGGKYRGRTVLCPPGV-IRPAMDCMRESLFDIL-------GNLEGQSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV--RVETFLERAEQFV 226
VGIEA SRG S VH VE D + +L ++I V ++ F+ +F+
Sbjct: 53 VGIEAASRGASPVHLVEKDRGKKATIL------------NNIGMVESEIQLFMTDVRRFI 100
Query: 227 -GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL--RTDMLDTCGCLV 283
+D + PP+ L I K+ L+ ++ YP + D G L+
Sbjct: 101 PTAKRQYDIVYADPPFPMDGKIELARAIDKAKLLTPGGLFIIHYPAEEKKDWPKEIGNLL 160
Query: 284 KIKDRRFGRTHLAIY 298
+R++GR+ L +
Sbjct: 161 CYDERKYGRSTLRFF 175
>gi|167037713|ref|YP_001665291.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040374|ref|YP_001663359.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166854614|gb|ABY93023.1| putative methyltransferase [Thermoanaerobacter sp. X514]
gi|166856547|gb|ABY94955.1| putative methyltransferase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 3 LRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 57 IGIEALSRGAQFCYFVDKSLKSIKCIRENVTELNLVPFAKILHRDVLKVIEMLDK----- 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY + + ++ ++ ++ +D ++ E+ + + G LVKI+
Sbjct: 112 -NNTKFDIIFLDPPYYQNLVDKTLIKLGEAKVLKEDGIVIAEHHKNDKVREMYGNLVKIR 170
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 171 ENKYGETILSFY 182
>gi|406705697|ref|YP_006756050.1| RsmD family RNA methyltransferase [alpha proteobacterium HIMB5]
gi|406651473|gb|AFS46873.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB5]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 9/185 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KK+L PK RP+ ++VK + F++L+ + S++ LDL++G+GS
Sbjct: 1 MRVISGKLKGKKILLPKDNLTRPLRDLVKESIFNLLEHSNKLNISIKNANVLDLFAGSGS 60
Query: 169 VGIEAISRGCSEVHFVEM--DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G+E ISRG +V FVE + + + I NL+ + + F + ++
Sbjct: 61 FGLEIISRGAEKVTFVENYSPAYEILSKNIINLQCQ-----NETEIINANCF-DYIDKLN 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
++ FD + + PP+ + L+ I L+ KD I++ + D++ T L I+
Sbjct: 115 KEELKFDLIFLDPPFKEKEINNLIENIKNKELLNKDGIIILHRHKKDDVVLT-SYLNIIE 173
Query: 287 DRRFG 291
R +G
Sbjct: 174 QRSYG 178
>gi|430750360|ref|YP_007213268.1| RsmD family RNA methyltransferase [Thermobacillus composti KWC4]
gi|430734325|gb|AGA58270.1| RNA methyltransferase, RsmD family [Thermobacillus composti KWC4]
Length = 197
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + GM+ RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVIAGTAKGTPLRAVPGMNTRPTTDKVKEAIFSMIGP------YFDGGAALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ D V+ V+ N E + S I+ ERA + + K
Sbjct: 55 LGIEALSRGADRAVFIDADRQAVA-VIRRNAEAARMAERSEIYC----NTAERALRILAK 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F Y+ + PPY LMA++ + L+ + +VVE+ +T G L K
Sbjct: 110 RGAVFRYVFLDPPYRMKSAGELMAEMEERGLLEDGAIVVVEHEADHRYPETVGGLTLRKR 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ATYGETAVSIY 180
>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
Length = 184
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F+ILQ + R+LDL+SG+G
Sbjct: 1 MRVIAGTARRLNLKTVPGMETRPTTDRIKETLFNILQP------EMPECRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F E +P S + NL +T + + + V L+ G+
Sbjct: 55 IGIEALSRGAAYAVFAEKNPKACS-CIRDNLSFTKLAEHGKLLNMDV---LQALRSLEGE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY ++ +S S+L + I+ E L TD
Sbjct: 111 EA-FDCIFMDPPYNHDLERQVLEYLSDSSLADDHTLIITEADLHTDF 156
>gi|227485070|ref|ZP_03915386.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236903|gb|EEI86918.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
lactolyticus ATCC 51172]
Length = 181
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK + LLSPK RP VK A FD+L R LDL+SGTG
Sbjct: 1 MMKVVAGKYKGYNLLSPKSKTSRPTDNKVKEAIFDMLYPYKNS------FRALDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG EV+F E + + ++L NL+ +D ++ +++ F+ +
Sbjct: 55 QMGIEFLSRGADEVYFNEKN-YSNFSILNQNLDK---VDRQRVYASKMD-FIRCLKDLSE 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FDY+ + PPY + + I + L+ +D ++ E D D + +KD
Sbjct: 110 KGLDFDYIFLDPPYETDFIDKALFYILEYDLLSEDGIVITESSKDIDFSDKYNLNI-LKD 168
Query: 288 RRFGRTHLAIY 298
+ +GR + Y
Sbjct: 169 KSYGRKFIKFY 179
>gi|373857201|ref|ZP_09599943.1| methyltransferase [Bacillus sp. 1NLA3E]
gi|372452851|gb|EHP26320.1| methyltransferase [Bacillus sp. 1NLA3E]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 12/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK++ K L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGKSKGKILKAVPGNTTRPTTDKVKEAIFNII------GPYFEGGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ D + + N+++ + S I+ R E RA + + K
Sbjct: 55 LGIEGLSRGLEKVIFVDRDGKAIQTIK-ENIKFCNLDEYSEIY--RNEA--NRALKAINK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY LM ++ + ++ IV E+ ++ + G L +IK
Sbjct: 110 RGLSFDVVFLDPPYKQQQLLSLMTELDHNRIIVPKGIIVCEHSHEVELPEAIGNLHQIKQ 169
Query: 288 RRFGRTHLAIYGPD 301
++G H+ I+ D
Sbjct: 170 EQYGIIHITIFEND 183
>gi|168180623|ref|ZP_02615287.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226949847|ref|YP_002804938.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|421836110|ref|ZP_16270689.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
gi|182668549|gb|EDT80528.1| putative methyltransferase [Clostridium botulinum NCTC 2916]
gi|226841020|gb|ACO83686.1| putative methyltransferase [Clostridium botulinum A2 str. Kyoto]
gi|409742094|gb|EKN41627.1| putative methyltransferase [Clostridium botulinum CFSAN001627]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + LE +F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSALE---EFASK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKELLNKEGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|357040480|ref|ZP_09102267.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
gi|355356571|gb|EHG04357.1| methyltransferase [Desulfotomaculum gibsoniae DSM 7213]
Length = 191
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+++KL SP + VRP + VK + F+I+ S L + DLY+GTG
Sbjct: 1 MRVIAGTAKKRKLKSPGKLPVRPTADRVKESLFNIIGS------RLPDSYFADLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG ++V FVE D V+ +L NL TG + + V+ ++ A + K
Sbjct: 55 VGIEALSRGAAKVLFVEKDSRVM-RILQDNLAITGLGGDAEVILGDVQAAIDIAMR---K 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY ++ ++K ++ + IV+E DM D G +
Sbjct: 111 QLTFDIVFADPPYRQGLAVGVLNILNKYPILRLNGVIVLEIGADEDMPDQAGKYQLWRRV 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGDTALVFY 180
>gi|262038077|ref|ZP_06011482.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
gi|261747897|gb|EEY35331.1| RNA methyltransferase, RsmD family [Leptotrichia goodfellowii
F0264]
Length = 186
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + +K+ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRITAGMLKNRKIKSREGRETRPTLERIKEAIFSII------GEQVVEAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+ IEA+SRG +E D + ++ I NL R L+R
Sbjct: 55 MAIEALSRGAGRAVMIEQDKEALRIIIENINNLSLENKCRAYKNDVFRAIEILDR----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K+ FD + + PPY + +IS+S ++ ++ I+ E+ + +T G VK
Sbjct: 110 -KNEKFDIIFMDPPYKENISAQTIEKISESNILSEEGIIISEHSTYEKLENTIGNFVKYD 168
Query: 287 DRRFGRTHLAIY 298
+R + + ++ Y
Sbjct: 169 ERDYNKKIISFY 180
>gi|238063277|ref|ZP_04607986.1| methyltransferase [Micromonospora sp. ATCC 39149]
gi|237885088|gb|EEP73916.1| methyltransferase [Micromonospora sp. ATCC 39149]
Length = 187
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G ++L +P G RP + V+ A F +Q+ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRLAAPPGAGTRPTSDRVREALFSAVQA----DVDLAGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE DP + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGAAHVLLVESDP-RAARVVRENIAALRAAPAARLVTGKVATVLA-----AG 110
Query: 228 KD-GPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
D GP+D + PPY D +V ++A + + D+ +VVE RT + +
Sbjct: 111 PDGGPYDVVFADPPYAVPDADVTAMLAALVDRGWLATDALVVVERSSRTGPVGWVEGVTA 170
Query: 285 IKDRRFGRTHL 295
+ RR+G T L
Sbjct: 171 ERSRRYGETTL 181
>gi|328954571|ref|YP_004371905.1| methyltransferase [Desulfobacca acetoxidans DSM 11109]
gi|328454895|gb|AEB10724.1| methyltransferase [Desulfobacca acetoxidans DSM 11109]
Length = 196
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + ++L +G +RP + V+ A F+IL P L R LDL++G G+
Sbjct: 1 MRIIAGRLKGRRLARVRG-PMRPTADRVREAVFNILG-----PVIL-GARVLDLFAGAGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FVE + + +L NL G VSS+ + V L + G+
Sbjct: 54 LGIEALSRGAGDAVFVE-NHRISLQILRRNLILCGLDQVSSVLPLSVARALPK---LAGQ 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + Q++ + +V ++VE+ + D+ +T LV + R
Sbjct: 110 GRCFDLVFLDPPYGRGMAAATLMQLATTGIVAPTGRVIVEHSRQEDLEETYRSLVYMDQR 169
Query: 289 RFGRTHLAIY 298
R+G T ++ Y
Sbjct: 170 RYGGTLISFY 179
>gi|433463262|ref|ZP_20420821.1| putative methyltransferase [Halobacillus sp. BAB-2008]
gi|432187772|gb|ELK45029.1| putative methyltransferase [Halobacillus sp. BAB-2008]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 18/178 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S RP + VK A F G GR LDL++G+G
Sbjct: 1 MRVIAGQFKGRQLKSVPTHKTRPTTDKVKEAVFH------GIGPFFDGGRALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQF 225
+GIEAISRG FV+ V V E LD+ RVE F +RA +
Sbjct: 55 LGIEAISRGADSCVFVDQQQKAVQTV----YENIKLLDIED----RVEVFRTDAKRAIKA 106
Query: 226 VGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
GK G F+Y+ + PPY Y+ LM + ++ LV D+ IV E+ D+ + G L
Sbjct: 107 AGKRGLEFEYIFLDPPYKKFSYKDLMEALLQNDLVADDAIIVCEHDASEDIPEEAGRL 164
>gi|443289357|ref|ZP_21028451.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
gi|385887510|emb|CCH16525.1| putative RNA methylase; putative putative SAM-dependent
methyltransferase domain [Micromonospora lupini str.
Lupac 08]
Length = 187
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F +++ L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVEA----EVDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE DP + V+ N+ + T RV T L G
Sbjct: 57 AVGLEALSRGARHVLLVESDP-RAARVIRENVATLRAGSAVRLVTARVATVLAS-----G 110
Query: 228 KD-GPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
D GP+D + PPY D E+ L+ + + D+ +VVE RT + +
Sbjct: 111 PDGGPYDVVFADPPYAVPDAEITALLTTLVDGGWLAPDALVVVERSRRTRQFEWVEGITP 170
Query: 285 IKDRRFGRTHL 295
+ RR+G T L
Sbjct: 171 ERSRRYGETTL 181
>gi|159897268|ref|YP_001543515.1| methyltransferase [Herpetosiphon aurantiacus DSM 785]
gi|159890307|gb|ABX03387.1| putative methyltransferase [Herpetosiphon aurantiacus DSM 785]
Length = 191
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ ++L P + RPM++ VK + F IL+ GR LDL++GTGS
Sbjct: 1 MRVITGSAKGRQLKGPPDIGTRPMLDRVKESLFGILEGFNAFE-----GRALDLFAGTGS 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FVE V + V NL+ T + + + V V+ FL Q + +
Sbjct: 56 LGIECLSRGAEWADFVEARSHVAA-VTKDNLKTTKLAERAKVWNVSVDKFL----QIIDE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ + + PPY L+ ++++ ++ + +V+ + + M G L +K R
Sbjct: 111 KTKYAIILLDPPYAMEGIPDLVVRVAEHGILDPNGVLVLGHWPKLVMPPQLGPLSLLKHR 170
Query: 289 RFGRTHLAIY 298
R G + +IY
Sbjct: 171 RIGDSCFSIY 180
>gi|410584622|ref|ZP_11321724.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
gi|410504208|gb|EKP93720.1| RNA methyltransferase, RsmD family [Thermaerobacter subterraneus
DSM 13965]
Length = 199
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GG+ R + L P G VRP + V+ A F+IL A + R LDL++GTGS
Sbjct: 1 MRVTGGRWRGRPLKVPAGRQVRPTTDRVRQALFNILGRA------VEGARVLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E +E DP VV+ VL NL + R + F A + G
Sbjct: 55 LAIEALSRGAREALCIESDPRVVA-VLKANLHAV--GAGAGAAVWRQDVFAAVA-KLAGG 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY ++A + L+ +VVE+ R + D L R
Sbjct: 111 SRVFDLILADPPYRQGLAARVVAAVGDGRLLAPGGRLVVEHDPREVLPDGVAGLECADRR 170
Query: 289 RFGRTHLAIY 298
R+G T L+ Y
Sbjct: 171 RYGDTALSFY 180
>gi|86742287|ref|YP_482687.1| hypothetical protein Francci3_3606 [Frankia sp. CcI3]
gi|86569149|gb|ABD12958.1| conserved hypothetical protein 95 [Frankia sp. CcI3]
Length = 185
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L+ P G RP E + F+ L + LR R DLY+G+G
Sbjct: 1 MTRIISGTAGGRRLVVPPGTTTRPTSERAREGLFNTLSTC----LDLRGARIADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V+ DP VV L N+ G L + I VE ++
Sbjct: 57 AVGLEALSRGATHALLVDRDP-VVIRTLRRNVTALG-LSGAKIAQAAVERVVQNT----- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
D P+D + + PPY D E+ +++++ +A + D VVE R+ + L +
Sbjct: 110 SDNPYDVVFLDPPYAMRDSELGEVLSKLLAAAWLTADGVCVVERSHRSGPVAWPDGLCAL 169
Query: 286 KDRRFGRTHL 295
+DRR+G L
Sbjct: 170 RDRRYGEGAL 179
>gi|157273446|gb|ABV27345.1| putative methyltransferase [Candidatus Chloracidobacterium
thermophilum]
Length = 183
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K+L S G+ VRP + ++ F+IL + +LDL +G+G+
Sbjct: 1 MRVIAGIHKGKRLRSEPGLRVRPTSDRMRETLFNIL------APRISDKAFLDLCAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + FVE + L+ NL G + + + + +QFV
Sbjct: 55 VGIEALSRGAARATFVERSRRALM-ALVENLARCGIGEEAEVIQ---RDAISAIKQFVQA 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD++ PPY + YE L+A + L+ +D + +VE+ + + +T G L + +
Sbjct: 111 GRRFDFIFCDPPYASSLYEPLLALVGNCPLLAEDGWFIVEHHAKQAIAETLGELRRFRAV 170
Query: 289 RFGRTHLAIY 298
+ G + L+ +
Sbjct: 171 QQGESTLSFF 180
>gi|256752289|ref|ZP_05493152.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300914458|ref|ZP_07131774.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307724306|ref|YP_003904057.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|320116128|ref|YP_004186287.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|256748857|gb|EEU61898.1| methyltransferase [Thermoanaerobacter ethanolicus CCSD1]
gi|300889393|gb|EFK84539.1| methyltransferase [Thermoanaerobacter sp. X561]
gi|307581367|gb|ADN54766.1| methyltransferase [Thermoanaerobacter sp. X513]
gi|319929219|gb|ADV79904.1| methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 184
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ S +G +VRP + VK + F+IL + + +LDL++GTG+
Sbjct: 1 MRVIAGKLKGRKVKSLEGNEVRPTADRVKESLFNILMN------KIEGSIFLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +FV+ + + + L F + ++V L++
Sbjct: 55 IGIEALSRGAQFCYFVDKSLKSIKCIRENVTELNLVPFAKILHRDVLKVIEMLDK----- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY + + ++ ++ ++ +D ++ E+ + + G LVKI+
Sbjct: 110 -NNTKFDIIFLDPPYYQNLVDKTLIKLGEAKVLKEDGIVIAEHHKNDKVREMYGNLVKIR 168
Query: 287 DRRFGRTHLAIY 298
+ ++G T L+ Y
Sbjct: 169 ENKYGETILSFY 180
>gi|260890394|ref|ZP_05901657.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
gi|260860014|gb|EEX74514.1| RNA methyltransferase, RsmD family [Leptotrichia hofstadii F0254]
Length = 184
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + +++ S +G + RP +E +K A F I+ + ++LDLYSGTG+
Sbjct: 1 MRIVAGTLKNRRIKSREGRETRPTLERIKEAIFSII------GEKVVDAKFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V EA+SRG +E D + ++I N+ G + + + E K
Sbjct: 55 VSFEALSRGAKRAIMIEEDKEALR-IIIENVNHLGMEEKCRAYKNDASRAI---EILARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + +IS+ L+ +D I+ E+ M D G VK +R
Sbjct: 111 NETFDIIFLDPPYKENISTKTIEKISEENLLERDGIIISEHSTYEKMSDKIGNFVKYDER 170
Query: 289 RFGRTHLAIY 298
+ + ++ Y
Sbjct: 171 DYNKKVVSFY 180
>gi|449123911|ref|ZP_21760232.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
gi|448943701|gb|EMB24588.1| RsmD family RNA methyltransferase [Treponema denticola OTK]
Length = 181
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 104/202 (51%), Gaps = 25/202 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ +I++S ++ + +++ P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 285 IKDRRFGRTHLAIYGPDWAQKK 306
+R +GR+ + Y + +++K
Sbjct: 160 SDERVYGRSIVDFYRKEISRRK 181
>gi|375012032|ref|YP_004989020.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
gi|359347956|gb|AEV32375.1| RNA methyltransferase, RsmD family [Owenweeksia hongkongensis DSM
17368]
Length = 185
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK R +K+ +PK + VRP + K + F+IL + LDL SGTG
Sbjct: 1 MIRIISGKHRGRKIQAPKNLPVRPTTDRAKESLFNILNNH----FYFDEVTALDLCSGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ E SRGC ++ ++ + + + E L++ ++H R E F QFV
Sbjct: 57 NISYELASRGCPDIIAIDDNQACIKFI----QETAEKLEMDTLHAFRAEIF-----QFVE 107
Query: 228 KDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D + PP+ YE L+ +I + L+ ++ F+VVE+ D+
Sbjct: 108 KDSKTYDLIFADPPFDFDQYEKLVEKIFEKNLLSEEGFLVVEHQSMQDL 156
>gi|386859432|ref|YP_006272138.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
gi|384934313|gb|AFI30986.1| N6-adenine-specific methylase, putative [Borrelia crocidurae str.
Achema]
Length = 181
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V GK + K+ P+ VRP+M +++ A F IL + + +LD+++GTG
Sbjct: 1 MRVSSGKYKGWKVACPRVGYVRPVMAIIREAFFSILFN------QILGINFLDVFTGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG S VH V+ + + NVLI N + I + F +AE F+ K
Sbjct: 55 MSLEALSRGASLVHLVDYNKF-SKNVLIKNFD---------IVNEPYKFFFTKAEFFLAK 104
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D +D + + PP+ + L+ ISK+ + K++ I++ YP R ++ + L K
Sbjct: 105 RDLFYDLIYLDPPFDYPLKKKLLEIISKNKSLNKNAKIIIHYPARENLDNNILRLSKYDF 164
Query: 288 RRFGRTHLAIY 298
R++G + L +
Sbjct: 165 RKYGGSRLDFF 175
>gi|315502400|ref|YP_004081287.1| methyltransferase [Micromonospora sp. L5]
gi|315409019|gb|ADU07136.1| methyltransferase [Micromonospora sp. L5]
Length = 187
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F + S L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVHSH----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D + V+ N+ + + T +V T L
Sbjct: 57 AVGLEALSRGAAHVLLVESDA-RAARVIRENIAALRAAPAARLVTGKVATVLAAGPT--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
DGP+D + PPY D E+ ++A + A + D+ +VVE RT + +
Sbjct: 113 -DGPYDVVFADPPYAVPDAEITAMLAALVDGAWLAPDALVVVERSSRTGPVTWVEGVTPE 171
Query: 286 KDRRFGRTHL 295
+ RR+G T L
Sbjct: 172 RSRRYGETTL 181
>gi|331004263|ref|ZP_08327741.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
gi|330411428|gb|EGG90840.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
str. F0167]
Length = 184
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 30/203 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + + +LDL++G+G
Sbjct: 1 MRVISGTARSLILKTPKGTSTRPTTDKIKETLFNMISN------EIYDSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E +F ++D + + NLE T + +++ E LE+ + +GK
Sbjct: 55 IGIEALSRGAREAYFCDIDREAIQ-CIRQNLEHTKLANKATVLKGSFEANLEKLKS-LGK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + + SAL+ + + +++E +TD
Sbjct: 113 --KFDIVFIDPPYQKGFEDKCLDILINSALIDEYTLVIIEEEFKTDT------------- 157
Query: 289 RFGRTHLAIYGPDWAQKKRKSEK 311
THL+ DW KK K K
Sbjct: 158 ----THLS---KDWNIKKVKEYK 173
>gi|154504976|ref|ZP_02041714.1| hypothetical protein RUMGNA_02486 [Ruminococcus gnavus ATCC 29149]
gi|336432512|ref|ZP_08612347.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794859|gb|EDN77279.1| RNA methyltransferase, RsmD family [Ruminococcus gnavus ATCC 29149]
gi|336018849|gb|EGN48586.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
2_1_58FAA]
Length = 189
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GM+ RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGTAKRLQLKTLDGMETRPTTDRIKETLFNMI------APSVFGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL +T + + T V T L + E
Sbjct: 55 IGIEALSRGAKEAVFVEKNPKAMACVK-ENLNYTKLSEKAMTMTKDVLTALYQLE----G 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD++ + PPY ++ +S S L+ +D+ I+VE TD
Sbjct: 110 EKVFDFVFMDPPYDQDLERQVLTYLSGSELIYEDTVIIVEASKHTDF 156
>gi|322419232|ref|YP_004198455.1| methyltransferase [Geobacter sp. M18]
gi|320125619|gb|ADW13179.1| methyltransferase [Geobacter sp. M18]
Length = 193
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++LL+PK VRP + VK A F IL S G + + R LD+++GTG+
Sbjct: 1 MRVIAGSARGRQLLAPKSHRVRPTADRVKEALFSILVSRLGDFSGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSI---HTVRVETFLERAEQ 224
+GIEA+SRG F+ D S LI NLE T D + + +L R E
Sbjct: 58 LGIEALSRGAEFALFI--DSHRESAELIRRNLEGTKLADQARVVVQEAAAALKWLSRGEP 115
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
PF + + PPY + L+ +S S ++ + +V E+ + D+ G L +
Sbjct: 116 ------PFHLVFLDPPYGEGHTQRLLEILSTSPVIDAGTTVVAEFSAKEDVPTRFGRLAE 169
Query: 285 IKDRRFGRTHLAI 297
+ R +G T L+
Sbjct: 170 SERRVYGDTALSF 182
>gi|345022639|ref|ZP_08786252.1| hypothetical protein OTW25_15186 [Ornithinibacillus scapharcae
TW25]
Length = 190
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 16/188 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G + RP + VK A F +L G LDL++G+GS
Sbjct: 1 MRVVAGIHKGRQLKAVPGSNTRPTTDKVKEAVFQMLGP------FFEGGIALDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG FV+ P + + I L+ G + R + F RA
Sbjct: 55 LGVEALSRGIDSCVFVDKHPKAIQTIRENITTLKLEG-----QVEIFRADAF--RALSAA 107
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K G FD + + PPY ++Y ++ I K LV D I E+ + ++LDT L +
Sbjct: 108 AKRGLTFDLIFIDPPYGKINYLEILEIIVKEKLVNDDGIIYCEHDAKENLLDTVADLSVV 167
Query: 286 KDRRFGRT 293
K +G T
Sbjct: 168 KRVHYGGT 175
>gi|255659780|ref|ZP_05405189.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
gi|260847851|gb|EEX67858.1| RNA methyltransferase, RsmD family [Mitsuokella multacida DSM
20544]
Length = 190
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 12/185 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL S + + LD+++GTG+
Sbjct: 1 MRIITGSARGCRLKTPKGQATRPTSDRIKESLFNILGS------KVYGRKVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ + ++ N T D +++H V L R EQ
Sbjct: 55 LGLEALSRGAASACFVDQ---ATAALIRENAVHTRLQDRATVHGGDVFAQLARFEQ---G 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F+ + PPY +E + +SA++ D +VVE+ + + L + +R
Sbjct: 109 GASFNLIFCDPPYHKGLFERALTFFDESAVLAHDGILVVEHGADENTMPELAKLSCVLNR 168
Query: 289 RFGRT 293
R+G T
Sbjct: 169 RYGHT 173
>gi|169335591|ref|ZP_02862784.1| hypothetical protein ANASTE_02006 [Anaerofustis stercorihominis DSM
17244]
gi|169258329|gb|EDS72295.1| RNA methyltransferase, RsmD family [Anaerofustis stercorihominis
DSM 17244]
Length = 186
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L +PK VRP + +K F+I+ P SL +LDL++G+G+
Sbjct: 7 MRVIAGKMRGTNLENPKDRRVRPTTDRIKEDLFNIIMPY--IPDSL----FLDLFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEAISRGC + FV+ MD + ++ N++ T +D S++ +F+ +
Sbjct: 61 IGIEAISRGCKKSIFVDNNMDSF---RLIKKNIKKTKCIDQSTVIKKDAISFVNTTKD-- 115
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
FD + + PPY + L+ I K ++ KD ++VE+ + L+ LV IK
Sbjct: 116 ----KFDVIFLDPPYNYEKLKNLIENIVKCDILCKDGILIVEHD-KNIPLEPVEKLVNIK 170
Query: 287 DRRFGRTHLAIY 298
+ + T + +
Sbjct: 171 TKSYSLTSIDFF 182
>gi|260437135|ref|ZP_05790951.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
gi|292810447|gb|EFF69652.1| RNA methyltransferase, RsmD family [Butyrivibrio crossotus DSM
2876]
Length = 183
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 16/185 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G R L +P GMD RP + K F++LQ+ PG +LDL++G+G
Sbjct: 1 MRVIAGTRRSMPLKAPVGMDTRPTQDRTKETLFNVLQNE-------IPGAEFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ IEA+SRG S VE + VS + NL +T F D +++ +ET + A +G
Sbjct: 54 AISIEALSRGASHATLVENNKNAVS-CIKDNLIFTKFSDEATL----METDVMAALYKLG 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGC-LVK 284
FD + + PPY ++ ++ A V + + +++E L+ D+ ++ CG +VK
Sbjct: 109 GHKEFDIVFMDPPYNLEIEAQVLKTMNNMASVTEYTTVIIEASLKRDLSFVEECGFRIVK 168
Query: 285 IKDRR 289
+K +
Sbjct: 169 VKQYK 173
>gi|197106627|ref|YP_002132004.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
gi|196480047|gb|ACG79575.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
Length = 187
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K L++P G RP + + A F+IL+ A P +R R +DL++G+G+
Sbjct: 1 MRIVSGEFRGKALVTPPGQGTRPTSDRARQAIFNILEHAPWSP-GVRDLRVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + FVE D + N++ G + +H R G
Sbjct: 60 LGFEALSRGAAFCLFVETDE-AARGAIRENVDGMGLFGRTRVHRRDATQLGVRP----GA 114
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
DGP FD + PPY EV++A++ + + KD+ VVE
Sbjct: 115 DGPAFDLAFLDPPYGKGLAEVVLARLVEGGWLAKDAVAVVE 155
>gi|386392447|ref|ZP_10077228.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
gi|385733325|gb|EIG53523.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. U5L]
Length = 202
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++++GG+ RR K++ +G+ RP V+ A F +L + G +L PG R LDL++G
Sbjct: 3 MRIIGGRFGGRRIKVIESQGL--RPATGRVREALFSMLAARG----ALAPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQ 224
GSVGIEA+SRG S+ FVE P V+ VL NL G ++ VE + RA +
Sbjct: 57 AGSVGIEALSRGASQALFVEKHP-AVARVLRENLRGLGL---AAHEAWVVEADVARALPR 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-----LDTC 279
G+ FD +++ PPY +A + L+ I E D+ DT
Sbjct: 113 LAGQA--FDLVAIDPPYGLGLLPPTLAGLVAHGLLAPGGVIAAEIEAGADLPDAAVPDTL 170
Query: 280 GCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 314
CL DR +G+T + ++ P E P
Sbjct: 171 ECL---TDRLYGQTRIILWTPILPASPSTPEPSTP 202
>gi|390956785|ref|YP_006420542.1| RsmD family RNA methyltransferase [Terriglobus roseus DSM 18391]
gi|390411703|gb|AFL87207.1| RNA methyltransferase, RsmD family [Terriglobus roseus DSM 18391]
Length = 195
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R + L++P+GMD RP + ++ F++L S+ R+ DLY+G+G+
Sbjct: 1 MRVIAGTYRSRPLVAPRGMDTRPTSDRLRETLFNVLGP------SVVGARFADLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EAISRG +EV F E P ++ + NL L V + V + GK
Sbjct: 55 VGVEAISRGAAEVFFAEKSPAALAAIRA-NLRT---LKVPGGYQVEGSGRSGLLKWLSGK 110
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSA--LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
P D + + PPY A +Y + + A L+ D+ ++ E+ + +LD G L +
Sbjct: 111 --PLDIVYLDPPYDEAEEYRRTLTALGTPANELLTADAVVIAEHTRKHPLLDEYGVLRRT 168
Query: 286 KDRRFGRTHLAIY 298
+ G L+ Y
Sbjct: 169 RTLLQGDAALSFY 181
>gi|373470131|ref|ZP_09561276.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763099|gb|EHO51598.1| RNA methyltransferase, RsmD family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 184
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 101/192 (52%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR L +PKG RP + +K F+++ + L +LD+++G+G
Sbjct: 1 MRVISGTARSLILKTPKGNLTRPTTDKIKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V+F ++D V + NL T FLD + + E+ L++ + G
Sbjct: 55 IGIEALSRGAKKVYFCDIDREAVE-CIKYNLAHTKFLDRAVVMKGSFESNLDKIK---GL 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGCLVKIK 286
FD + + PPY + + + S L+ + + I++E +TD L+ +VK+K
Sbjct: 111 GEKFDIIFLDPPYKKGFEDKCLDILLNSTLIDEHTLIIIEEDFKTDTAHLEKDWDIVKVK 170
Query: 287 DRRFGRTHLAIY 298
+ + + H+ I+
Sbjct: 171 EYKSNK-HIFIH 181
>gi|424834145|ref|ZP_18258861.1| putative methyltransferase [Clostridium sporogenes PA 3679]
gi|365978920|gb|EHN14986.1| putative methyltransferase [Clostridium sporogenes PA 3679]
Length = 185
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N+ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIRNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMENIDKKELLDKEGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|357053068|ref|ZP_09114171.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
gi|355386047|gb|EHG33088.1| RsmD family RNA methyltransferase [Clostridium clostridioforme
2_1_49FAA]
Length = 185
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSAKRLLLKTLDGLDTRPTTDRIKETLFNMLQ------PDLPDCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +E +P + + NL T + + V T L+R E GK
Sbjct: 55 IGIEALSRGAGLAVMIENNPRALECIR-ENLARTKLEGRAMVMGCDVITGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+ FD + + PPY +++ +S+S +V +D+ IV+E TD
Sbjct: 111 NYRFDIVFMDPPYHHEYERLVLDYLSRSPMVTEDTLIVIEASRETD 156
>gi|325956530|ref|YP_004291942.1| methyltransferase [Lactobacillus acidophilus 30SC]
gi|325333095|gb|ADZ07003.1| Methyltransferase [Lactobacillus acidophilus 30SC]
Length = 183
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNIRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY M Q++K L+ D+ +V E T++ G + +K+
Sbjct: 111 ELKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNDDAIVVAETDDHTELGPIEGFSL-VKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|224532821|ref|ZP_03673436.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225548532|ref|ZP_03769580.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226320947|ref|ZP_03796495.1| putative methyltransferase [Borrelia burgdorferi 29805]
gi|224512210|gb|EEF82596.1| putative methyltransferase [Borrelia burgdorferi WI91-23]
gi|225370795|gb|EEH00230.1| putative methyltransferase [Borrelia burgdorferi 94a]
gi|226233649|gb|EEH32382.1| putative methyltransferase [Borrelia burgdorferi 29805]
Length = 189
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + G + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSFVG---------EFYKFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
KD +D++ + PP+ + L+ I K ++ I++ YP D+ +I
Sbjct: 115 KKDLFYDFIYLDPPFNYKNKINLLEIILKGKILNDKVSIIMHYPSNEDL--------EIN 166
Query: 287 DRRFGRTHLAIYG 299
+F +L YG
Sbjct: 167 TSKFSVYNLKRYG 179
>gi|187934826|ref|YP_001885427.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
gi|187722979|gb|ACD24200.1| RNA methyltransferase, RsmD family [Clostridium botulinum B str.
Eklund 17B]
Length = 185
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I +L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKSLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
+ + F+ + + PPY + I +S ++ ++ IV + ++ D
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPKAIEIIKESNILSENGIIVTKIDTIEEIYDGYED 163
Query: 282 LVKIKDRRFGRTHLAIYG 299
++ IK R++G T + Y
Sbjct: 164 IILIKSRKYGNTTVCFYA 181
>gi|423512027|ref|ZP_17488558.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-1]
gi|402450288|gb|EJV82122.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-1]
Length = 188
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG +V FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKVIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ I + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKGQKIVSLISVIDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|339500050|ref|YP_004698085.1| hypothetical protein Spica_1432 [Spirochaeta caldaria DSM 7334]
gi|338834399|gb|AEJ19577.1| Conserved hypothetical protein CHP00095 [Spirochaeta caldaria DSM
7334]
Length = 177
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ +++ P G+ +RP M+ ++ + F IL G +LD++SG+G
Sbjct: 1 MRITGGQLCGRRVEVPDGV-IRPAMDRMRESVFAILGDLTG-------KSFLDIFSGSGI 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA SRG + V VEMDP + LI N+ SI V++ AE FV +
Sbjct: 53 IALEAASRGANPVDAVEMDP-LKRKTLIKNV---------SISPVKINCHFMSAELFVKR 102
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
PFDY+ PP+ + L A IS+S LV S +++ P R D T + + D
Sbjct: 103 AKKPFDYIFCDPPFPYRFKQQLAASISQSKLVIDGSVVLLHRP-REDQFPTTLEQLHLID 161
Query: 288 RR-FGRTHLAIY 298
RR +GR+ + Y
Sbjct: 162 RREYGRSIVDFY 173
>gi|385814060|ref|YP_005850453.1| RsmD family RNA methyltransferase [Lactobacillus helveticus H10]
gi|323466779|gb|ADX70466.1| RNA methyltransferase, RsmD family [Lactobacillus helveticus H10]
Length = 182
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R T L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNTAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M Q++K L+ + IV E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEY 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|160947552|ref|ZP_02094719.1| hypothetical protein PEPMIC_01487 [Parvimonas micra ATCC 33270]
gi|158446686|gb|EDP23681.1| RNA methyltransferase, RsmD family [Parvimonas micra ATCC 33270]
Length = 180
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL G LDL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPMDYSVRPTTDKIKESIFNILFEIGESSVV------LDLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V+F + + + NLE G L S I + +++ F
Sbjct: 55 IGIEFLSRGAEKVYFCDFSDDSIK-ITKRNLENAGLLTKSIIMK---KNYMDCLNYFYSN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
D FDY+ + PPY E + I + ++ +D I++E
Sbjct: 111 DLKFDYIFLDPPYKYEYIEKTLDYIWNNNILKEDGIIILE 150
>gi|167758115|ref|ZP_02430242.1| hypothetical protein CLOSCI_00453 [Clostridium scindens ATCC 35704]
gi|336421613|ref|ZP_08601769.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664012|gb|EDS08142.1| RNA methyltransferase, RsmD family [Clostridium scindens ATCC
35704]
gi|336000084|gb|EGN30237.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
5_1_57FAA]
Length = 189
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 11/160 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + GMD RP + +K F++L L +LDL++G+G
Sbjct: 1 MRVIAGSAKRIQLRTLDGMDTRPTTDRIKETLFNML------APYLYDCMFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ + NL T + T+ V T L + E
Sbjct: 55 IGIEALSRGSMETVFVEKNPKAMA-CIKENLTRTHLEHKAMTMTMDVMTALYKLEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
+ FDY+ + PPY + ++ ++ S+LV + I+VE
Sbjct: 110 EKQFDYIFLDPPYGKELEKRVLQYLADSSLVAAEGVIIVE 149
>gi|291544856|emb|CBL17965.1| RNA methyltransferase, RsmD family [Ruminococcus champanellensis
18P13]
Length = 180
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L + +GMDVRP + VK A F +Q L + LDL++G+G
Sbjct: 1 MRVITGSARGRRLRTLEGMDVRPTTDKVKEAMFSAIQ------FQLPGAQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ ++ V+ NLE TGF DVS++ FL +Q
Sbjct: 55 LGIEALSRGAAHGVFVDQSSRSIA-VVRENLETTGFTDVSAVVLKSQMDFLRTTDQ---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY E + +S+ G ++ E ++ + G L K
Sbjct: 110 --RFDIAFLDPPYGKGILEETLPVLSEYMNPG--GIVICEMETELNLPEKIGHLDLKKTY 165
Query: 289 RFGRTHLAIY 298
++G+ + +Y
Sbjct: 166 KYGKIKVVMY 175
>gi|256842912|ref|ZP_05548400.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|293381233|ref|ZP_06627240.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295692717|ref|YP_003601327.1| methyltransferase [Lactobacillus crispatus ST1]
gi|423317777|ref|ZP_17295674.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
gi|423321115|ref|ZP_17298987.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|256614332|gb|EEU19533.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
125-2-CHN]
gi|290922201|gb|EFD99196.1| RNA methyltransferase, RsmD family [Lactobacillus crispatus 214-1]
gi|295030823|emb|CBL50302.1| Methyltransferase [Lactobacillus crispatus ST1]
gi|405596438|gb|EKB69774.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB077-07]
gi|405597836|gb|EKB71086.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
FB049-03]
Length = 182
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L + G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FQGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ + ++ N+ T +++ +R L + F
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAAL---KLFSEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY M Q+ KS L+ + +V E T++ + G + IK+
Sbjct: 111 DEKFDLVFLDPPYAKEKIAKDMLQMVKSNLLNDHAIVVAETDDHTELGEITGFSL-IKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|381180841|ref|ZP_09889678.1| methyltransferase [Treponema saccharophilum DSM 2985]
gi|380767197|gb|EIC01199.1| methyltransferase [Treponema saccharophilum DSM 2985]
Length = 192
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + + P G+ +RP M+ ++ + F IL G WLDL+SG+G+
Sbjct: 1 MRITGGKLKGHVVKCPDGI-IRPAMDRMRESVFAILGDLSG-------KSWLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFV 226
+ IEA+SRG + V E D V VL N+ T + I H + VE FL+R
Sbjct: 53 IAIEAVSRGAARVQLCEKDKIKVKQVL-ENVAVTERICNVKIGCHFLAVELFLKRCRD-- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALV---GKDSFIVVEYPLRTDMLDTCGCLV 283
FDY+ + PP+ L+ IS+ L+ D+ +++ +P D G L
Sbjct: 110 ----TFDYIFLDPPFPYKFRTELLKTISERRLLNPENPDAMVMIHFPEEDTPPDEIGSLF 165
Query: 284 KIKDRRFGRTHLAIY 298
R +GR+ + Y
Sbjct: 166 VCDKRVYGRSIVHFY 180
>gi|168182571|ref|ZP_02617235.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|237795933|ref|YP_002863485.1| RsmD family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182674241|gb|EDT86202.1| RNA methyltransferase, RsmD family [Clostridium botulinum Bf]
gi|229261371|gb|ACQ52404.1| RNA methyltransferase, RsmD family [Clostridium botulinum Ba4 str.
657]
Length = 185
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + R LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSRVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFASK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKKLLDKEGLIVTKIDSSEEIYGGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|385678572|ref|ZP_10052500.1| methyltransferase [Amycolatopsis sp. ATCC 39116]
Length = 186
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 15/186 (8%)
Query: 112 LGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171
+ G A ++L P RP E V+ A F+ L++AG L R LDLY+G+G++G+
Sbjct: 1 MAGAASGRRLKVPA-QGTRPTSERVREALFNALEAAG----ELTDARVLDLYAGSGALGL 55
Query: 172 EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231
EA+SRG ++ FVE D V VL N+ G S+ + VET L + D P
Sbjct: 56 EALSRGAADAVFVESDRRAV-QVLKANVSALGL--GGSVRSGPVETVLAQP-----ADEP 107
Query: 232 FDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRR 289
F + PPY+ A ++A + + +D ++VE LR D ++ R
Sbjct: 108 FHLVLADPPYSVGAQKIGAVLAALGVGGWIAEDGLVIVERALRDGEPDWPAGFAPLRTSR 167
Query: 290 FGRTHL 295
+G T L
Sbjct: 168 YGDTAL 173
>gi|225389050|ref|ZP_03758774.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
gi|225044872|gb|EEG55118.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
DSM 15981]
Length = 188
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ S+ +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGLDTRPTTDRIKETLFNMLQP------SIPDCIFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S VE +P V + + NL T D + + V + L + E GK
Sbjct: 55 IGIEALSRGASLAVLVENNPKAV-DCIRENLSRTKLEDRAVVMGNDVISSLRKLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY + ++ +S S + +++ I++E TD
Sbjct: 111 NYVFDIIFMDPPYNKGWEQQVLTYLSGSPMADENTTIIIEAAKETDF 157
>gi|152976345|ref|YP_001375862.1| putative methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152025097|gb|ABS22867.1| putative methyltransferase [Bacillus cytotoxicus NVH 391-98]
Length = 188
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+I+ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGSTTRPTTDKVKESIFNII------GPYFDGGSALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEA+SRG +V FV+ D V ++ NLE +H + E + AE+
Sbjct: 55 LGIEALSRGMDKVIFVDRDHKAVK-IIRQNLESC------RVHN-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ ++ FD + + PPY L++ I + L+ +D I+ E+ + +T G LVK
Sbjct: 107 LIKREISFDLILLDPPYKDQKIVSLISIIDQHGLLNEDGLIMAEHGNEVILPETIGKLVK 166
Query: 285 IKDRRFGRTHLAIY 298
++ ++G T ++IY
Sbjct: 167 VRAEKYGITAISIY 180
>gi|153814837|ref|ZP_01967505.1| hypothetical protein RUMTOR_01052 [Ruminococcus torques ATCC 27756]
gi|317500353|ref|ZP_07958578.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089638|ref|ZP_08338537.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438959|ref|ZP_08618579.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847868|gb|EDK24786.1| RNA methyltransferase, RsmD family [Ruminococcus torques ATCC
27756]
gi|316898294|gb|EFV20340.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405006|gb|EGG84544.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017214|gb|EGN46980.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
1_1_57FAA]
Length = 189
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + GMD RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSARSLRLKTLDGMDTRPTTDRIKETLFNMI------GPSMFDCVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P + V NL++T + T V L + E
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMMCVK-DNLKFTKLEGKAVTLTTDVMNALYKLEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FDY+ + PPY + ++ +S S+LV +D+ I+VE TD
Sbjct: 110 EKVFDYIFLDPPYDRGFEKRVLEYLSDSSLVYEDTQIIVEASKETDF 156
>gi|302865855|ref|YP_003834492.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
gi|302568714|gb|ADL44916.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
Length = 187
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F + S L R+ DLY+G+G
Sbjct: 1 MTRIVAGTLGGRRIAAPPGAGTRPTSDRVREALFSAVHSH----VDLDGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D + V+ N+ + + T +V T L
Sbjct: 57 AVGLEALSRGAAHVLLVESDA-RAARVIRENIAALRAAPAARLVTGKVATVLAAGPT--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
DGP+D + PPY D E+ +++ + A + D+ +VVE RT + +
Sbjct: 113 -DGPYDVVFADPPYAVPDAEITAMLSALVDGAWLAPDALVVVERSSRTGPVTWVEGVTPE 171
Query: 286 KDRRFGRTHL 295
+ RR+G T L
Sbjct: 172 RSRRYGETTL 181
>gi|269123396|ref|YP_003305973.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
gi|268314722|gb|ACZ01096.1| methyltransferase [Streptobacillus moniliformis DSM 12112]
Length = 183
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G + + +LS G + RP +E VK A + I+ + + +LDLYSGTG+
Sbjct: 1 MRITSGYLKNRVILSRIGKETRPTLERVKEAIYSIIST------KVEDAIFLDLYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG + +EMD + V+I N+ L++ + E K
Sbjct: 55 MSFEAMSRGANRAVMIEMDKEALR-VIIENV---NNLNLDKKCRAYKNDVMRAIEILENK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY E + ++S ++ KD I+ E+ + D G VK +R
Sbjct: 111 NEKFDIIFMDPPYKENLTEKTLKKLSNHDILDKDGIIICEHGKYEKLSDEIGNFVKFDER 170
Query: 289 RFGRTHLAIY 298
+ + + Y
Sbjct: 171 EYNKKIVTFY 180
>gi|300854457|ref|YP_003779441.1| hypothetical protein CLJU_c12710 [Clostridium ljungdahlii DSM
13528]
gi|300434572|gb|ADK14339.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 186
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G AR +KL+SP G ++ RP ++ VK A F+I+Q+ + + LD+++GTG
Sbjct: 1 MRIIAGLARGRKLMSPNGYNITRPTLDRVKEAMFNIIQN------RVYGSKVLDVFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + + V+ L N+E GF ++ T+ +++ E ++
Sbjct: 55 SLGLEAASRGAEKCYLVDRSSDTFY-FLDKNVENLGFSNICK--TINKDSY-EALQELSR 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + I L+ KD IV + ++ +V +
Sbjct: 111 KNLMFDIIFIDPPYKKDMIPPAVEIIESKNLLQKDGIIVTKIDTSEEIYQGNINIVLMDH 170
Query: 288 RRFGRTHLAIY 298
R++G+T + Y
Sbjct: 171 RKYGKTTVCFY 181
>gi|322436446|ref|YP_004218658.1| methyltransferase [Granulicella tundricola MP5ACTX9]
gi|321164173|gb|ADW69878.1| methyltransferase [Granulicella tundricola MP5ACTX9]
Length = 203
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R + L +P+G+++RP + ++ F+IL + LR R+ DLY+GTG+
Sbjct: 1 MRVIAGKYRSRALTAPEGLEIRPTSDRLRETMFNILAA----RMELRGCRFADLYAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFVG 227
VGIEAISRG + F E + + L NL G ++ L R ++
Sbjct: 57 VGIEAISRGATHCWFGEKAAPALKS-LRGNLAKLGVSGTEFTVEEKGAGGLLGRFQKL-- 113
Query: 228 KDGPFDYMSVTPPYTAV-DYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGCLVK 284
D + + PPY A +Y + + + L+ ++VE+ + + + G LV+
Sbjct: 114 -GLAMDLVFIDPPYEAEGEYSQTLGALGRGNLLAAGGLVIVEFATKGKFKLAERYGALVQ 172
Query: 285 IKDRRFGRTHLAIYG 299
+ + G T LA YG
Sbjct: 173 TRVYKQGETSLAFYG 187
>gi|119356843|ref|YP_911487.1| hypothetical protein Cpha266_1016 [Chlorobium phaeobacteroides DSM
266]
gi|119354192|gb|ABL65063.1| conserved hypothetical protein 95 [Chlorobium phaeobacteroides DSM
266]
Length = 178
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ GK + K+ + VRP VK + FD L + S+ LDL++G GS
Sbjct: 1 MQIIAGKYKGNKIRRTDTLAVRPCSSRVKKSLFDTLSARMDFEGSI----VLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V+FV+ + ++ L G D SSI V FL+R +
Sbjct: 57 LGFEALSRGSEFVYFVDQHTDALKSMKSTALHL-GVTDKSSIVNSDVTAFLDRTTE---- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
FD + PPYT DYE+L+ +I+ +++ ++ +++E+
Sbjct: 112 --QFDLVFCDPPYTWPDYELLIEKITAKSVLSEEGILLIEH 150
>gi|58337142|ref|YP_193727.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227903718|ref|ZP_04021523.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
gi|58254459|gb|AAV42696.1| hypothetical protein LBA0835 [Lactobacillus acidophilus NCFM]
gi|227868605|gb|EEJ76026.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
acidophilus ATCC 4796]
Length = 183
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 19/197 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FDGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR----VETFLERAEQ 224
+GIEA+SRG V+++ S ++ N+ T S++ +R ++TF E E+
Sbjct: 55 LGIEAVSRGYDRASLVDINRAACS-IIKKNVALTKEEAKFSVYNMRSNVALKTFAENGEK 113
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY M Q++ L+ +++ IV E T++ + G L+
Sbjct: 114 -------FDLVFLDPPYAKEKIAKDMQQMNNLGLLNENAIIVAETDDHTELGNIEGFLL- 165
Query: 285 IKDRRFGRTHLAIYGPD 301
IKD G+T + IY D
Sbjct: 166 IKDHHLGKTIVRIYRKD 182
>gi|227877353|ref|ZP_03995424.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256848713|ref|ZP_05554147.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|262045879|ref|ZP_06018843.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
gi|227863021|gb|EEJ70469.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256714252|gb|EEU29239.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-1A-US]
gi|260573838|gb|EEX30394.1| RsmD family RNA methyltransferase [Lactobacillus crispatus
MV-3A-US]
Length = 182
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ + ++ N+ T +++ +R L + F
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACT-IIKKNVALTKEEQRFNVYNMRSSAAL---KLFSEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY M Q+ KS L+ + +V E T++ + G + IK+
Sbjct: 111 DEKFDLVFLDPPYAKEKIAKDMLQMVKSNLLNDHAIVVAETDDHTELGEITGFSL-IKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|160939086|ref|ZP_02086437.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
gi|158438049|gb|EDP15809.1| hypothetical protein CLOBOL_03980 [Clostridium bolteae ATCC
BAA-613]
Length = 185
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + G+D RP + +K F++LQ L +LDL+SG+G+
Sbjct: 1 MRVIAGSARRLLLKTLDGLDTRPTTDRIKETLFNMLQ------PELADCMFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +E +P + + NL T + + + V T L+R E GK
Sbjct: 55 IGIEALSRGAGLAVMIENNPKALE-CIRENLSRTKLEERAMVMGCDVITGLKRLE---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+ FD + + PPY +++ ++ S +V +++ IV+E T+
Sbjct: 111 NYKFDIVFMDPPYNHEYERLVLDYLNHSPMVTEETLIVIEASRETE 156
>gi|332799408|ref|YP_004460907.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|438002564|ref|YP_007272307.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
gi|332697143|gb|AEE91600.1| methyltransferase [Tepidanaerobacter acetatoxydans Re1]
gi|432179358|emb|CCP26331.1| 16S rRNA (guanine(966)-N(2))-methyltransferase [Tepidanaerobacter
acetatoxydans Re1]
Length = 179
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 30/195 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS--AGGCPASLRPGRWLDLYSGT 166
++++GG R +K+ S GM+ RP + V+ A F+I+ S G C +LDL++GT
Sbjct: 1 MRIIGGFHRGRKIKSINGMNTRPTSDFVREALFNIIGSDVVGSC--------FLDLFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV--ETFLERAEQ 224
G+VGIEA+SRG F+E +P S ++ NL LD+ I RV + ++
Sbjct: 53 GAVGIEALSRGAQNAIFIEKNPIACS-IIKQNL-----LDLKLIGKGRVIQSDVISALKK 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP----LRTDMLDTCG 280
+ + FD + + PPY + + + + +S I++++P L+ D C
Sbjct: 107 LILEGNNFDIIFMDPPYFKNNIGATLDVLKDFNVA--ESIIIIQHPKDELLKFDGFACC- 163
Query: 281 CLVKIKDRRFGRTHL 295
K +++GRT L
Sbjct: 164 -----KHKQYGRTAL 173
>gi|315038076|ref|YP_004031644.1| methyltransferase [Lactobacillus amylovorus GRL 1112]
gi|312276209|gb|ADQ58849.1| Methyltransferase [Lactobacillus amylovorus GRL 1112]
Length = 183
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY M Q++K L+ D+ +V E T++ G + +K+
Sbjct: 111 ELKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNDDAIVVAETDDHTELGPIEGFSL-VKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|205373063|ref|ZP_03225868.1| hypothetical protein Bcoam_06735 [Bacillus coahuilensis m4-4]
Length = 191
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTKKGLRLKAVPGSGTRPTTDKVKEALFNMI------GPYFDGGNALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIEA+SRG V FV+ D + + NLE+ +D SS R ++ +RA + +
Sbjct: 55 LGIEALSRGIEHVIFVDRDQKAIQTIN-QNLEFCK-VDTSSFEVYRNDS--DRALKAIAR 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+D FD + + PPY + Y ++ +ISK ++ ++ +++ E+ + LV +
Sbjct: 111 RDITFDLIFLDPPYKKLKYVQILTEISKHKMIDENGYVICEHSSEDKLPHRVENLVTTRS 170
Query: 288 RRFGRTHLAIY 298
+G + +Y
Sbjct: 171 ETYGTITITLY 181
>gi|225027127|ref|ZP_03716319.1| hypothetical protein EUBHAL_01383 [Eubacterium hallii DSM 3353]
gi|224955591|gb|EEG36800.1| RNA methyltransferase, RsmD family [Eubacterium hallii DSM 3353]
Length = 184
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 13/181 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL + +GM RP + +K F++L + R+LDL+SG+G
Sbjct: 1 MRVIAGSARHLKLKTIEGMGTRPTTDRIKETLFNML------SFYVEESRFLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ FVE + + + NL T + + + + V T L E K
Sbjct: 55 IGIEALSRGASQAVFVEQNRKAAA-CIEENLNHTHLREKAVVMSKDVMTALRILED---K 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD---MLDTCGCLVKI 285
FDY+ + PPY + + + + S L +++ I++E L T+ ++DT + K
Sbjct: 111 KQAFDYIFMDPPYGKLLEKEAVLYLDGSVLCDENTTIIIESDLDTEFSWVMDTGFTITKE 170
Query: 286 K 286
K
Sbjct: 171 K 171
>gi|150390529|ref|YP_001320578.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149950391|gb|ABR48919.1| putative methyltransferase [Alkaliphilus metalliredigens QYMF]
Length = 187
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +L SP G+ RP + +K + F+I+Q+ + +DL+SG GS
Sbjct: 1 MRVIAGKAKGYRLQSPIGLQTRPTADRIKESLFNIIQN------DILHSTVIDLFSGAGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG ++ +F++ V + NL T +D++ I + + ++R Q
Sbjct: 55 LGIEALSRGANQAYFIDQSKNSVQAIK-ENLVRTKLIDLAEI----IHSDVQRGMTQLKE 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ D + + PPY +A I +++L+ I+VE+ ++ G L +
Sbjct: 110 RRYHADIIFMDPPYGKDLIVPTIAGIVQNSLLQDQGMIIVEHENLDEVPAEIGHLTLFRQ 169
Query: 288 RRFGRTHLAIY 298
+ +G+T ++ Y
Sbjct: 170 KNYGKTTISFY 180
>gi|449105069|ref|ZP_21741779.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|449119747|ref|ZP_21756142.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|449122137|ref|ZP_21758483.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|451969384|ref|ZP_21922613.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
gi|448949050|gb|EMB29876.1| RsmD family RNA methyltransferase [Treponema denticola H1-T]
gi|448949578|gb|EMB30403.1| RsmD family RNA methyltransferase [Treponema denticola MYR-T]
gi|448967397|gb|EMB48033.1| RsmD family RNA methyltransferase [Treponema denticola ASLM]
gi|451701773|gb|EMD56232.1| RsmD family RNA methyltransferase [Treponema denticola US-Trep]
Length = 183
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ +I++S ++ + +++ P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 285 IKDRRFGRTHLAIY 298
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|148380448|ref|YP_001254989.1| methyltransferase [Clostridium botulinum A str. ATCC 3502]
gi|153934015|ref|YP_001384671.1| methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153937379|ref|YP_001388192.1| methyltransferase [Clostridium botulinum A str. Hall]
gi|148289932|emb|CAL84045.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152930059|gb|ABS35559.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
ATCC 19397]
gi|152933293|gb|ABS38792.1| RNA methyltransferase, RsmD family [Clostridium botulinum A str.
Hall]
Length = 185
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QIYGSMVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + LE +F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSALE---EFASK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKELLNKEGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|20807931|ref|NP_623102.1| N-6 adenine-specific DNA methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479492|ref|ZP_05092816.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
gi|20516500|gb|AAM24706.1| N6-adenine-specific methylase [Thermoanaerobacter tengcongensis
MB4]
gi|214034577|gb|EEB75327.1| putative methyltransferase [Carboxydibrachium pacificum DSM 12653]
Length = 189
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG + +K+ S +G +VRP + VK A F+IL + + +LDL++GTG+
Sbjct: 6 LRVIGGTLKGRKIKSLEGEEVRPTSDRVKEALFNILMN------RIEGSVFLDLFAGTGN 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG +FV+ V + N+E L++ + + E F K
Sbjct: 60 VGIEALSRGAEFCYFVDKSTNSVKCIR-ENVEG---LELQPFCKIFHKDAFTALEIFHKK 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY E + +I ++ + ++ E R ++ + G L K+++
Sbjct: 116 SVKFDIIFLDPPYYQNLAEKALRRIGSLEVLKEGGIVIAEVHKRDELKERYGKLKKVREN 175
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 176 KYGETILMFY 185
>gi|284032692|ref|YP_003382623.1| methyltransferase [Kribbella flavida DSM 17836]
gi|283811985|gb|ADB33824.1| methyltransferase [Kribbella flavida DSM 17836]
Length = 196
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 22/209 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR +++ P G RP + V+ A F L+S G L LDLY+G+G
Sbjct: 1 MTRIIGGAARGRRIGVPAGTGTRPTADRVREAMFSSLESEFGTLLGLNV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER-AEQFV 226
+VG+EA+SRG + VE D ++V+ N+ G T L R AE+
Sbjct: 58 AVGLEALSRGAARAVLVEADR-RAADVIAANIRVVGLPGA---------TLLTRPAEKVA 107
Query: 227 GKD--GPFDYMSVTPPY---TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
D PFD + PPY TA +VL+A +++ + D+ +V+E R G
Sbjct: 108 QGDNPAPFDLVFADPPYRLETAELQDVLLA-LAERGWLADDAVVVIERGKREPWEWPAG- 165
Query: 282 LVKIKDRRFGRTHLAIYGPDWAQKKRKSE 310
++DR++G T L YG Q+ SE
Sbjct: 166 FAALRDRKYGETRL-WYGHRHEQETGVSE 193
>gi|225552269|ref|ZP_03773209.1| putative methyltransferase [Borrelia sp. SV1]
gi|225371267|gb|EEH00697.1| putative methyltransferase [Borrelia sp. SV1]
Length = 178
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 25/192 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ IEA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 55 MSIEALSRGASLTHLVECNRK-IKITLVKNFNF-----VEEFY----KFFFQRAEDFLSK 104
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
KD +D++ + PP+ + L+ I K ++ I++ YP D+ +I
Sbjct: 105 KDLFYDFIYLDPPFNYKNKINLLEIILKGKILNDKVNIIMHYPSSEDL--------EINT 156
Query: 288 RRFGRTHLAIYG 299
+F +L YG
Sbjct: 157 SKFSVYNLKRYG 168
>gi|291563379|emb|CBL42195.1| RNA methyltransferase, RsmD family [butyrate-producing bacterium
SS3/4]
Length = 186
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L + GM+ RP + +K F++LQ+ L R+LDL++G+G+
Sbjct: 1 MRVIAGSARRLLLKTVDGMETRPTTDRIKETLFNMLQN------DLYGARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FV+ +S + NL+ T + + + + V + R + +
Sbjct: 55 IGIEALSRGAKEAVFVDKGDGQISCIR-ENLKTTHLEEKARVMSADVTEAVRR----LDR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
DG FD++ + PPY + ++ + + L +++ I+ E L D
Sbjct: 110 DGKSFDFIFMDPPYRMDLPKKVLEALKDTCLADEETLIIAEEALDVDF 157
>gi|260101770|ref|ZP_05752007.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417007040|ref|ZP_11945249.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
gi|260084414|gb|EEW68534.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328468539|gb|EGF39541.1| hypothetical protein AAULH_05044 [Lactobacillus helveticus MTCC
5463]
Length = 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M Q++K L+ + IV E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|373494916|ref|ZP_09585511.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
gi|371967052|gb|EHO84529.1| RsmD family RNA methyltransferase [Eubacterium infirmum F0142]
Length = 193
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 100/190 (52%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +KL +P G ++RP + VK + F+IL + +DL++GTG+
Sbjct: 1 MRIITGKYRGRKLETPFGNEIRPTSDKVKESIFNILM------CDIEDAVCVDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F + + + +++ N+++ + S + L+R ++ V
Sbjct: 55 LGLEALSRGALKCWFCDNERNSI-DIIKRNIKYCKADNESIVLAGDYRKALKRIDEKV-- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D + + PPY A YE + QI L+ IV E+ TD+ + G + K +
Sbjct: 112 ----DIIFIDPPYHAGLYEKAVEQIDLLDLLTDVGIIVAEHEKMTDLPEHIGGMKLFKHK 167
Query: 289 RFGRTHLAIY 298
++G+T L++Y
Sbjct: 168 KYGKTCLSLY 177
>gi|320160572|ref|YP_004173796.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
gi|319994425|dbj|BAJ63196.1| hypothetical protein ANT_11620 [Anaerolinea thermophila UNI-1]
Length = 193
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ GKAR +L S G RP+ ++VK A F+IL GG + +LD++ GTGSV
Sbjct: 5 RIISGKARGTRLKSVPGDITRPITDMVKEALFNIL---GG---DIYGATFLDMFGGTGSV 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
GIEA+SRG + F+++ V + NLE T + + + T L R D
Sbjct: 59 GIEALSRGANFCRFIDLHRVAVQTIRT-NLELTRLQERAQVLQGDAFTLLSRP-----AD 112
Query: 230 GPFDYMSVTPPYTAVDYEVLMAQISKSA-LVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FDY+ + PP +E +A + + +D +++V+ + L + + R
Sbjct: 113 RQFDYIFIAPPQYKGLWEKALATVDNHVEWLSEDGWVIVQIDPVEYSPQSLQHLEEFEQR 172
Query: 289 RFGRTHLAIYGPDWAQKKRKSEK 311
R+G T L Y +RKSE+
Sbjct: 173 RYGNTLLIFY-------ERKSEE 188
>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
Length = 204
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 12/193 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K G F + + PPY + L++ I++ L+ +V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAERQLLEPRGVVVAEHSAEAELPEEVGGLTRW 173
Query: 286 KDRRFGRTHLAIY 298
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|282882122|ref|ZP_06290763.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
gi|281298152|gb|EFA90607.1| RNA methyltransferase, RsmD family [Peptoniphilus lacrimalis 315-B]
Length = 188
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG +FV+ + NV+ N+E D S + + + L E F+ +
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKCRLKDKSKVLKMDYKKAL---ESFLSE 110
Query: 229 DGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
F Y+ + PP+ DY + + I ++ L+ KD +++E+ D + +IK+
Sbjct: 111 --TFSYIYMDPPFMKRDYYIDSINLIKENRLLKKDGLLIIEHK-TDDTFELPEGFSEIKN 167
Query: 288 RRFGRTHLAIY 298
+++G T L+I+
Sbjct: 168 KKYGNTSLSIW 178
>gi|256004523|ref|ZP_05429502.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281417949|ref|ZP_06248969.1| methyltransferase [Clostridium thermocellum JW20]
gi|385778335|ref|YP_005687500.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|419722229|ref|ZP_14249377.1| methyltransferase [Clostridium thermocellum AD2]
gi|419724327|ref|ZP_14251395.1| methyltransferase [Clostridium thermocellum YS]
gi|255991528|gb|EEU01631.1| methyltransferase [Clostridium thermocellum DSM 2360]
gi|281409351|gb|EFB39609.1| methyltransferase [Clostridium thermocellum JW20]
gi|316940015|gb|ADU74049.1| methyltransferase [Clostridium thermocellum DSM 1313]
gi|380772333|gb|EIC06185.1| methyltransferase [Clostridium thermocellum YS]
gi|380781800|gb|EIC11450.1| methyltransferase [Clostridium thermocellum AD2]
Length = 191
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 6 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG FV+ + NL T + S TV +F
Sbjct: 59 GSLGIEALSRGADSAVFVDKSRECFFTIK-ENLVHT---KLESKATVIAGDVFVTLNKFS 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + I+++ ++ + IV E+ + + + L + +
Sbjct: 115 KNNKKFDIIFLDPPYGKGLVEKTLKSIAENDIIVHEGIIVAEHDIEDAVPEEVDGLERYR 174
Query: 287 DRRFGRTHLAIY 298
++G T ++ Y
Sbjct: 175 WEKYGNTAVSFY 186
>gi|163941670|ref|YP_001646554.1| putative methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|229013115|ref|ZP_04170280.1| Methyltransferase [Bacillus mycoides DSM 2048]
gi|229019133|ref|ZP_04175967.1| Methyltransferase [Bacillus cereus AH1273]
gi|229025376|ref|ZP_04181794.1| Methyltransferase [Bacillus cereus AH1272]
gi|229134739|ref|ZP_04263548.1| Methyltransferase [Bacillus cereus BDRD-ST196]
gi|229168670|ref|ZP_04296392.1| Methyltransferase [Bacillus cereus AH621]
gi|423389760|ref|ZP_17366986.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1X1-3]
gi|423418161|ref|ZP_17395250.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3X2-1]
gi|423518622|ref|ZP_17495103.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-4]
gi|423592073|ref|ZP_17568104.1| RsmD family RNA methyltransferase [Bacillus cereus VD048]
gi|423598758|ref|ZP_17574758.1| RsmD family RNA methyltransferase [Bacillus cereus VD078]
gi|423661230|ref|ZP_17636399.1| RsmD family RNA methyltransferase [Bacillus cereus VDM022]
gi|423669505|ref|ZP_17644534.1| RsmD family RNA methyltransferase [Bacillus cereus VDM034]
gi|423674316|ref|ZP_17649255.1| RsmD family RNA methyltransferase [Bacillus cereus VDM062]
gi|163863867|gb|ABY44926.1| putative methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|228614826|gb|EEK71929.1| Methyltransferase [Bacillus cereus AH621]
gi|228648785|gb|EEL04811.1| Methyltransferase [Bacillus cereus BDRD-ST196]
gi|228735961|gb|EEL86538.1| Methyltransferase [Bacillus cereus AH1272]
gi|228742149|gb|EEL92315.1| Methyltransferase [Bacillus cereus AH1273]
gi|228748369|gb|EEL98229.1| Methyltransferase [Bacillus mycoides DSM 2048]
gi|401106434|gb|EJQ14395.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3X2-1]
gi|401160830|gb|EJQ68205.1| RsmD family RNA methyltransferase [Bacillus cereus HuA2-4]
gi|401232206|gb|EJR38708.1| RsmD family RNA methyltransferase [Bacillus cereus VD048]
gi|401237028|gb|EJR43485.1| RsmD family RNA methyltransferase [Bacillus cereus VD078]
gi|401298632|gb|EJS04232.1| RsmD family RNA methyltransferase [Bacillus cereus VDM034]
gi|401301271|gb|EJS06860.1| RsmD family RNA methyltransferase [Bacillus cereus VDM022]
gi|401309867|gb|EJS15200.1| RsmD family RNA methyltransferase [Bacillus cereus VDM062]
gi|401641851|gb|EJS59568.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1X1-3]
Length = 188
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRLQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY A L++ + + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKAQKIVSLVSVMDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|347542366|ref|YP_004857002.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985401|dbj|BAK81076.1| methyltransferase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 189
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ KKL+SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGKKLISPDGYDVTRPTLDRVKQSIFNIIQNELN-----RDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+E+ SRG +++ + + S L N++ TG D + ++ E F F G
Sbjct: 56 SLGLESASRGAKKIYLCDKNDVTFS-YLEQNIKNTGLSDCA--FAIKGE-FDVNLRSFKG 111
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + + + ++ K+ I+V+ + +
Sbjct: 112 KE-KFDLIFIDPPYNSDYVNRSINLVDDLNILNKNGLIIVKISSSESKFIESKNINLVDY 170
Query: 288 RRFGRTHLAIY 298
R++G T + Y
Sbjct: 171 RKYGNTTVCFY 181
>gi|188587596|ref|YP_001920574.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
gi|188497877|gb|ACD51013.1| RNA methyltransferase, RsmD family [Clostridium botulinum E3 str.
Alaska E43]
Length = 185
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I NL++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKNLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
+ + F+ + + PPY + I ++ ++ ++ I+ + ++ D
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPEAIKIIKENNILSENGIIITKIDTIEEIYDGYED 163
Query: 282 LVKIKDRRFGRTHLAIYG 299
+ K R++G T + YG
Sbjct: 164 IFLRKSRKYGNTTVCFYG 181
>gi|71082860|ref|YP_265579.1| N-6 adenine-specific DNA methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762717|ref|ZP_01264682.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
gi|71061973|gb|AAZ20976.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718519|gb|EAS85169.1| N6-adenine-specific methylase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 188
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L PK RP+ ++ K + F+IL+ + L LDL+SG GS
Sbjct: 1 MRIISGNFKGKKILLPKDKLTRPLKDLTKESIFNILKHSKLLNVELENSNILDLFSGVGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG + F+E V+ N+L N++ + + I + + F E + +
Sbjct: 61 FGLECLSRGARNITFLESYTEVL-NILKKNIDNLNQQNQTKI--IEKDIFSENTLKLL-- 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+ FD + + PPY L+ I+K L+ D I++ + D
Sbjct: 116 NDKFDIIFMDPPYKEKKLPFLLNAITKLELLNTDGIIIIHRHKKED 161
>gi|310779235|ref|YP_003967568.1| methyltransferase [Ilyobacter polytropus DSM 2926]
gi|309748558|gb|ADO83220.1| methyltransferase [Ilyobacter polytropus DSM 2926]
Length = 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K + KG + RP ++ VK A F +Q + LDL+SGTG+
Sbjct: 1 MRIIAGTAKNKSIKCRKGTETRPTLDRVKEALFSKIQ------PYVEDCSILDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EAISRG +E D + V+I N+ GF + + V RA + +G+
Sbjct: 55 IALEAISRGAKRAIMIEKDQEALK-VIIENVNSLGFENKCRAYKNEV----SRAIEILGR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ +I K+ ++ I+ E+ L + K+ +
Sbjct: 110 KGEKFDIIFMDPPYRENVCTEVIKKIEKNGILSDGGLIICEHHLHERLDQEIVGYKKVDE 169
Query: 288 RRFGRTHLAIY 298
+ +G+ L Y
Sbjct: 170 KSYGKKTLTFY 180
>gi|418935866|ref|ZP_13489617.1| methyltransferase [Rhizobium sp. PDO1-076]
gi|375057400|gb|EHS53573.1| methyltransferase [Rhizobium sp. PDO1-076]
Length = 186
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 19/195 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRVVGGEFRGRALATPKSNDIRPTIDRTRESLFNILAHA--HPGLLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVG 227
VGIEA+SRGC FVE ++V +L W +D +H R+ L R +G
Sbjct: 59 VGIEALSRGCKSALFVE------NSVEGRSLLWEN-IDAFGLHGRARI---LRRDATDLG 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
PFD + PPY E M K + + +++E R D+ T +
Sbjct: 109 PSNNIEPFDLLFADPPYGKGLGEKAMLSAHKGGWLAPGALVILEE--RGDVQVTVDPVFA 166
Query: 285 I-KDRRFGRTHLAIY 298
++R FG T + +
Sbjct: 167 FTEERTFGDTKMYFF 181
>gi|42527386|ref|NP_972484.1| methyltransferase [Treponema denticola ATCC 35405]
gi|422342342|ref|ZP_16423282.1| methyltransferase [Treponema denticola F0402]
gi|449104956|ref|ZP_21741678.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
gi|449109063|ref|ZP_21745702.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|449111599|ref|ZP_21748192.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|449113587|ref|ZP_21750074.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|449116178|ref|ZP_21752629.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|41817971|gb|AAS12395.1| methyltransferase, putative [Treponema denticola ATCC 35405]
gi|325473657|gb|EGC76846.1| methyltransferase [Treponema denticola F0402]
gi|448954065|gb|EMB34848.1| RsmD family RNA methyltransferase [Treponema denticola H-22]
gi|448957572|gb|EMB38313.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33521]
gi|448958503|gb|EMB39233.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 35404]
gi|448960336|gb|EMB41051.1| RsmD family RNA methyltransferase [Treponema denticola ATCC 33520]
gi|448962232|gb|EMB42925.1| RsmD family RNA methyltransferase [Treponema denticola AL-2]
Length = 183
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGL-------SFLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ +I +S ++ + +++ P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIEESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 285 IKDRRFGRTHLAIY 298
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|328948230|ref|YP_004365567.1| methyltransferase [Treponema succinifaciens DSM 2489]
gi|328448554|gb|AEB14270.1| methyltransferase [Treponema succinifaciens DSM 2489]
Length = 189
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKG-MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++ GGK + + +P G M +RP M+ ++ + F+I+ SL +LDL+SG+G
Sbjct: 1 MRITGGKLKGRVTETPYGKMAIRPAMDKMRESVFNIIG------FSLEGKSFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFV 226
++ +EA+S G S V EMD +L N++ + V + + VE FL+R ++
Sbjct: 55 TIALEAVSHGASAVTLCEMDKSKAKTIL-KNVKMAEEVGVRINCRFMSVELFLKRCKE-- 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
FDY+ + PP+ + L+ L+ K+ +++ YP + D G LV
Sbjct: 112 ----KFDYIFLDPPFPYKFRKELVETAGTRELLTKNGQLLIHYPAEDPLPDKIGNLVLSD 167
Query: 287 DRRFGRTHLAIY 298
R +GR+ + Y
Sbjct: 168 KRIYGRSIVNFY 179
>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
Length = 189
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA +KL + P+G RP E+V+ A F L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGKAGGRKLRVPPRG--TRPTTELVREALFSSLEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL-ERAEQF 225
G++G+EA+SRG E FVE D V VL N+ G V + +VET + E A +
Sbjct: 55 GALGLEALSRGAREAMFVEADRTAV-EVLRGNIARVGLGGV--VRQGKVETVVAEPAPE- 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
PF+ + PPY AVD E V++ ++ + + D+ +VVE L+ L
Sbjct: 111 -----PFELVLADPPY-AVDAETLGVVLTRLVEGGWLAPDALVVVERRLQDGPPRWPDAL 164
Query: 283 VKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 165 RVLRTRRYGDNGL 177
>gi|225568062|ref|ZP_03777087.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
gi|225163158|gb|EEG75777.1| hypothetical protein CLOHYLEM_04135 [Clostridium hylemonae DSM
15053]
Length = 189
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + +GMD RP + +K F+++ L +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLEGMDTRPTTDRIKETLFNMISP------YLYDCIFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL T ++ + V T L + E
Sbjct: 55 IGIEALSRGAMEAVFVEKNPKAMACVK-ENLRRTKLSHRAATMSTDVMTALYKLEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGCLV-KI 285
D FD++ + PPY ++ +++S L+ + I+VE T D L G ++ K+
Sbjct: 110 DKQFDFIFMDPPYGLQLERKVLEYLAESELLADEGVIIVEASRETEFDYLKELGFMILKV 169
Query: 286 KDRR 289
K+ +
Sbjct: 170 KEYK 173
>gi|227820998|ref|YP_002824968.1| methylase protein [Sinorhizobium fredii NGR234]
gi|227339997|gb|ACP24215.1| putative methylase protein [Sinorhizobium fredii NGR234]
Length = 185
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL G P L GR LDL++GTG+
Sbjct: 1 MRIVGGEFRGRALATPKSNDIRPTTDRTRESLFNILSH--GYPGVLDGGRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QGRAKIFRRDAVDLGP 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK- 284
VG PF + PPY E +A + + + +V+E + D+ +
Sbjct: 110 VGTMEPFHLVFADPPYGKGLGERALASAAAGGWLVPGALVVLEE--QADVRPQLSAAFEP 167
Query: 285 IKDRRFGRTHLAIY 298
+ DR FG T + Y
Sbjct: 168 LDDRAFGDTRMHFY 181
>gi|423489107|ref|ZP_17465789.1| RsmD family RNA methyltransferase [Bacillus cereus BtB2-4]
gi|423494832|ref|ZP_17471476.1| RsmD family RNA methyltransferase [Bacillus cereus CER057]
gi|423498376|ref|ZP_17474993.1| RsmD family RNA methyltransferase [Bacillus cereus CER074]
gi|401150925|gb|EJQ58377.1| RsmD family RNA methyltransferase [Bacillus cereus CER057]
gi|401160425|gb|EJQ67803.1| RsmD family RNA methyltransferase [Bacillus cereus CER074]
gi|402432355|gb|EJV64414.1| RsmD family RNA methyltransferase [Bacillus cereus BtB2-4]
Length = 188
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRLQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY A L++ + + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKAQKIVSLVSIMDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|315122183|ref|YP_004062672.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495585|gb|ADR52184.1| hypothetical protein CKC_02165 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 186
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +PK +RP K A FDIL P L R LD+++GTGS
Sbjct: 1 MRIVGGKFRGRLLYTPKNRSIRPSDSRTKKALFDILTHV--YPDYLASTRMLDMFAGTGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRGC V FV+ + + ++ N E FL V + + L + +G
Sbjct: 59 VGFEALSRGCHYVLFVDNNAESI-RLIRKNSE---FLGVEKSCNIFFKDVLHLRK--IGN 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK-IKD 287
PF + + PPY + ++ + + + ++ +VVE +D+ + G K ++
Sbjct: 113 IKPFKLLYLDPPYGQGFVQEVLDTVDEEGWLEPNALVVVEEYAGSDV--SVGSAFKFLQY 170
Query: 288 RRFGRT--HLAIYGP 300
R++G T H Y P
Sbjct: 171 RKYGDTKIHFFYYHP 185
>gi|374603388|ref|ZP_09676368.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
gi|374390984|gb|EHQ62326.1| N6-adenine-specific methylase [Paenibacillus dendritiformis C454]
Length = 187
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 10/188 (5%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ G AR + L GM RP + VK A F ++ GR LDL++GTG +G
Sbjct: 1 MISGTARGRTLKPVPGMGTRPTTDKVKEALFSMIGP------YFEGGRALDLFAGTGGLG 54
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IEA+SRG F++ D + V+ NL TG D + ++ L + ++
Sbjct: 55 IEALSRGAEWAVFIDKDARAI-EVVRGNLTATGLADKAEVYRNDARRAL---KALAKRNL 110
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
F Y+ + PPY D + L+ ++ + L+ D+ IVVE+ + G L K +
Sbjct: 111 SFHYVFLDPPYRLKDADELLMEMWDNGLLSDDAIIVVEHDASHSYSERIGPLSVWKKADY 170
Query: 291 GRTHLAIY 298
G ++IY
Sbjct: 171 GDIAVSIY 178
>gi|408378532|ref|ZP_11176129.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
gi|407747669|gb|EKF59188.1| hypothetical protein QWE_13078 [Agrobacterium albertimagni AOL15]
Length = 186
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKSNDIRPTVDRTRESLFNILAHA--HPGVLDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRGC FVE ++V L W +D +H L R +G
Sbjct: 59 VGIEALSRGCKSALFVE------NSVEGRGLLWEN-IDAFGLHG--RARMLRRDATDLGP 109
Query: 229 DG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LDTCGCLVK 284
PF+ + PPY E + + + KD+ +++E R D+ +
Sbjct: 110 ANNIEPFELVFADPPYGKGLGEKALLSAHRGGWLAKDALVILEE--RADVQVSVDPVFAF 167
Query: 285 IKDRRFGRTHLAIY 298
+++R FG T + +
Sbjct: 168 VEERTFGDTKMYFF 181
>gi|385817418|ref|YP_005853808.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
gi|327183356|gb|AEA31803.1| Methyltransferase [Lactobacillus amylovorus GRL1118]
Length = 183
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FNGGDVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC V+++ S ++ N+ T + I+ +R L + F K
Sbjct: 55 LGIEAVSRGCDHASLVDINHAACS-IIKKNVALTKEENRFDIYNMRSSAAL---KLFAEK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY M Q++K L+ D+ +V E T++ G + +K+
Sbjct: 111 ELKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNDDAIVVAETDDHTELGPIEGFSL-VKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|300814523|ref|ZP_07094779.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511350|gb|EFK38594.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 188
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R KL +P G++ RP ++ ++ + F+IL G LDL++G+G
Sbjct: 1 MRIIGGDCRGIKLSAPLGLNTRPTLDRIRESLFNILGQY------FNGGTVLDLFAGSGC 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E +SRG +FV+ + NV+ N+E D S + + + L E F+ +
Sbjct: 55 NGLEFLSRGVDFSYFVD-NSSQSYNVITSNIEKRRLKDKSKVLKMDYKKAL---ESFLSE 110
Query: 229 DGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
F Y+ + PP+ DY + + I ++ L+ KD +++E+ D + +IK+
Sbjct: 111 --TFSYIYMDPPFMKRDYYIDSINLIKENRLLKKDGLLIIEHK-TDDTFELPEGFSEIKN 167
Query: 288 RRFGRTHLAIY 298
+++G T L+I+
Sbjct: 168 KKYGNTSLSIW 178
>gi|410462786|ref|ZP_11316342.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409984050|gb|EKO40383.1| RNA methyltransferase, RsmD family [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 200
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAIFIERSP-AVAKVLRDNLRGLGLGPDVAQVVEADVVKALGRL--- 111
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC-----G 280
G FD +++ PPY +A+I+ L+ D +V E D+ +
Sbjct: 112 --SGGYFDLIAIDPPYGQDLLPPTLAKIAALELIAPDGVVVAEIEAGLDLPEAAVPPVFD 169
Query: 281 CLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 314
CL DR +G+T + ++ P E IP
Sbjct: 170 CL---TDRTYGQTRIILWTPKNPASSSTPEPSIP 200
>gi|229061594|ref|ZP_04198937.1| Methyltransferase [Bacillus cereus AH603]
gi|423452766|ref|ZP_17429619.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X1-1]
gi|423522238|ref|ZP_17498711.1| RsmD family RNA methyltransferase [Bacillus cereus HuA4-10]
gi|423558507|ref|ZP_17534809.1| RsmD family RNA methyltransferase [Bacillus cereus MC67]
gi|228717715|gb|EEL69366.1| Methyltransferase [Bacillus cereus AH603]
gi|401139325|gb|EJQ46887.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X1-1]
gi|401175987|gb|EJQ83186.1| RsmD family RNA methyltransferase [Bacillus cereus HuA4-10]
gi|401191775|gb|EJQ98797.1| RsmD family RNA methyltransferase [Bacillus cereus MC67]
Length = 188
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ I + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKGQKIVSLISVIDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|125973792|ref|YP_001037702.1| putative methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714017|gb|ABN52509.1| methyltransferase [Clostridium thermocellum ATCC 27405]
Length = 210
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
+L+V+ G A+ KL + KG+ RP + VKGA F+IL A+ PG LD+Y+GT
Sbjct: 25 ILRVISGTAKGHKLKTIKGLATRPTSDKVKGAVFNIL-------AAFVPGTNVLDIYAGT 77
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GS+GIEA+SRG FV+ + NL T + S TV +F
Sbjct: 78 GSLGIEALSRGADSAVFVDKSRECFFTIK-ENLVHT---KLESKATVIAGDVFVTLNKFS 133
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY E + I+++ ++ + IV E+ + + + L + +
Sbjct: 134 KNNKKFDIIFLDPPYGKGLVEKTLKSIAENDIIVHEGIIVAEHDIEDAVPEEVDGLERYR 193
Query: 287 DRRFGRTHLAIY 298
++G T ++ Y
Sbjct: 194 WEKYGNTAVSFY 205
>gi|161507338|ref|YP_001577292.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
gi|160348327|gb|ABX27001.1| hypothetical protein lhv_0885 [Lactobacillus helveticus DPC 4571]
Length = 182
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T ++ S++ +R L F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENLFSVYNMRSNAAL---RLFAEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M Q++K L+ + IV E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|187918079|ref|YP_001883642.1| methyltransferase [Borrelia hermsii DAH]
gi|119860927|gb|AAX16722.1| methyltransferase [Borrelia hermsii DAH]
Length = 190
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSG 165
L+ V GK + K+ PK VRP+M +V+ A F I+ Q G +LD+++G
Sbjct: 9 LMHVSAGKYKGWKVAFPKIGGVRPVMAIVREAFFSIIFNQIVGSS--------FLDVFAG 60
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TG + +EA+SRG S H V+ + S VLI N E + + + ++AE F
Sbjct: 61 TGIMSLEALSRGASLAHLVDYNKSSKS-VLIKNFE---------VVSEPYKFCFKKAELF 110
Query: 226 VGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K D +D + + PP+ E L+ IS++ + KD+ I++ YP R ++ L K
Sbjct: 111 LKKRDLYYDLIYLDPPFGYSFKENLLKIISENESLNKDAKIIIHYPSRENLDSNILRLSK 170
Query: 285 IKDRRFGRTHLAIY 298
R++G + L +
Sbjct: 171 YDSRKYGGSRLDFF 184
>gi|449131589|ref|ZP_21767799.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
gi|448938946|gb|EMB19872.1| RsmD family RNA methyltransferase [Treponema denticola SP37]
Length = 186
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ +I++S ++ + +++ P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIAESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 285 IKDRRFGRTHLAIY 298
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|443632833|ref|ZP_21117012.1| methyltransferase [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347656|gb|ELS61714.1| methyltransferase [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 184
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTMIDEYQMLKEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|145593832|ref|YP_001158129.1| putative methyltransferase [Salinispora tropica CNB-440]
gi|145303169|gb|ABP53751.1| putative methyltransferase [Salinispora tropica CNB-440]
Length = 187
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ +P G RP + V+ A F LQ+A A L R+ DLY+G+G
Sbjct: 1 MTRIVAGALGGRRITAPPGAGTRPTSDRVREALFSALQAA----ADLDGVRFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE +P + + N+ + + +V T L +
Sbjct: 57 AVGLEALSRGAAHVLLVESNP-RAARTIRANVAALRAGPAARLVAGKVATVLADGPE--- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GP+D + PPY+ D EV ++ + + + ++ +VVE R+ + +
Sbjct: 113 -EGPYDVVFADPPYSVSDEEVSSMLGALVGNGWLAPEALVVVERSSRSGPVGWVPGVAGE 171
Query: 286 KDRRFGRTHL 295
+ RR+G T L
Sbjct: 172 RSRRYGETIL 181
>gi|216264731|ref|ZP_03436723.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218249780|ref|YP_002374732.1| methyltransferase [Borrelia burgdorferi ZS7]
gi|221217524|ref|ZP_03588994.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223889261|ref|ZP_03623849.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224534074|ref|ZP_03674657.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225549786|ref|ZP_03770750.1| putative methyltransferase [Borrelia burgdorferi 118a]
gi|215981204|gb|EEC22011.1| putative methyltransferase [Borrelia burgdorferi 156a]
gi|218164968|gb|ACK75029.1| putative methyltransferase [Borrelia burgdorferi ZS7]
gi|221192587|gb|EEE18804.1| putative methyltransferase [Borrelia burgdorferi 72a]
gi|223885294|gb|EEF56396.1| putative methyltransferase [Borrelia burgdorferi 64b]
gi|224512773|gb|EEF83141.1| putative methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|225369594|gb|EEG99043.1| putative methyltransferase [Borrelia burgdorferi 118a]
Length = 189
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
KD +D++ + PP+ + L+ I K ++ I++ YP D+ +I
Sbjct: 115 KKDLFYDFIYLDPPFNYKNKINLLEIILKGKILNDKVSIIMHYPSNEDL--------EIN 166
Query: 287 DRRFGRTHLAIYG 299
+F +L YG
Sbjct: 167 TSKFSVYNLKRYG 179
>gi|110802301|ref|YP_699016.1| methyltransferase [Clostridium perfringens SM101]
gi|110682802|gb|ABG86172.1| RNA methyltransferase, RsmD family [Clostridium perfringens SM101]
Length = 185
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQWY--IPDAV----VIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG E + V+ P V VL N+E GF D H + + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY-SALRSLASR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD M + PPY + I + L+ +D IV + ++ + + K +
Sbjct: 111 GKVFDLMFIDPPYMKNLIPEAIEIIEEKNLLQEDGLIVTKIDSSEEIFEGTEKIKLTKVK 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTICFY 180
>gi|386758220|ref|YP_006231436.1| methyltransferase [Bacillus sp. JS]
gi|384931502|gb|AFI28180.1| methyltransferase [Bacillus sp. JS]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L+ A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALQAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|321315263|ref|YP_004207550.1| hypothetical protein BSn5_19595 [Bacillus subtilis BSn5]
gi|320021537|gb|ADV96523.1| putative enzyme with adenosyl binding site [Bacillus subtilis BSn5]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKQAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLNALLTMIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|449128921|ref|ZP_21765158.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
gi|448939083|gb|EMB20005.1| RsmD family RNA methyltransferase [Treponema denticola SP33]
Length = 186
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGSLKNRQVECPKGI-IRPAMDRMRESVFSILGDLSGLS-------FLDLFTGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V+ VE D P ++ NV + + + + ETF++RA++
Sbjct: 53 CGLEAYSRGAYPVYLVEKDADKFPVLLKNVSMADKKL-------ECKRMPAETFIKRAKE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ +I +S ++ + +++ P M T G L K
Sbjct: 106 ------SFDIIYLDPPFPYKFHIELLEKIEESKILKEGGLVMMHRPSEKAMPQTIGSLTK 159
Query: 285 IKDRRFGRTHLAIY 298
+R +GR+ + Y
Sbjct: 160 SDERVYGRSIVDFY 173
>gi|358067394|ref|ZP_09153873.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
gi|356694310|gb|EHI55972.1| RsmD family RNA methyltransferase [Johnsonella ignava ATCC 51276]
Length = 189
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 14/183 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G + RP ++VK F+++ L R+LDL++G+G+
Sbjct: 1 MRVIAGTARRLLLKTPVGKNTRPTSDIVKETLFNMIND------KLYKARFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE D + NLE T ++I ++++ F G+
Sbjct: 55 IGIEALSRGADMAVFVEND-LEACRCISYNLEHTRLDMYATI--LKMDVF-SAVRLLSGR 110
Query: 229 --DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP--LRTDMLDTCGCLVK 284
+ FD + + PPY + ++ S LV D+ I+VE ++ + + C ++K
Sbjct: 111 ETESAFDIIFMDPPYNKELESKCLRLLADSRLVDNDTIIIVEADSHMKHVLFEDCWNIIK 170
Query: 285 IKD 287
+K+
Sbjct: 171 VKE 173
>gi|221313698|ref|ZP_03595503.1| hypothetical protein BsubsN3_08237 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|255767341|ref|NP_389384.2| hypothetical protein BSU15010 [Bacillus subtilis subsp. subtilis
str. 168]
gi|402775745|ref|YP_006629689.1| ribosomal RNA small subunit methyltransferase [Bacillus subtilis
QB928]
gi|418033355|ref|ZP_12671832.1| hypothetical protein BSSC8_27760 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914361|ref|ZP_21962988.1| RNA methyltransferase, RsmD family [Bacillus subtilis MB73/2]
gi|259710486|sp|O34331.2|YLBH_BACSU RecName: Full=Putative rRNA methyltransferase YlbH
gi|225184968|emb|CAB13374.2| putative ribosomal RNA small subunit methyltransferase D [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469503|gb|EHA29679.1| hypothetical protein BSSC8_27760 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480928|gb|AFQ57437.1| Putative ribosomal RNA small subunitmethyltransferase [Bacillus
subtilis QB928]
gi|407958907|dbj|BAM52147.1| hypothetical protein BEST7613_3216 [Synechocystis sp. PCC 6803]
gi|407964485|dbj|BAM57724.1| hypothetical protein BEST7003_1523 [Bacillus subtilis BEST7003]
gi|452116781|gb|EME07176.1| RNA methyltransferase, RsmD family [Bacillus subtilis MB73/2]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|375008061|ref|YP_004981694.1| methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286910|gb|AEV18594.1| Methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 201
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 2 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 56 GGLGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 110
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K G F + + PPY + L++ I+ L+ +V E+ ++ + G L +
Sbjct: 111 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRW 170
Query: 286 KDRRFGRTHLAIY 298
K +G T + IY
Sbjct: 171 KRETYGITGVTIY 183
>gi|410455402|ref|ZP_11309282.1| putative methyltransferase [Bacillus bataviensis LMG 21833]
gi|409929229|gb|EKN66314.1| putative methyltransferase [Bacillus bataviensis LMG 21833]
Length = 186
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVVSGICKGRPLKAVPGNTTRPTTDKVKEALFNMI------GPYFDGGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +V FV+ + + V+ N++ F + S + + L+ + +
Sbjct: 55 LGLEALSRGLEKVIFVDRESKAIQ-VIHENIKACKFEENSEVFRNDADRALK---ALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FDY+ + PPY LM ++ + LV K +V E+ ++ T G +IK
Sbjct: 111 DICFDYIFLDPPYKKQQLVHLMEKMDQQNLVKKSGIVVCEHSFDIELPQTVGRFTEIKHE 170
Query: 289 RFGRTHLAIYGPD 301
+G + IY D
Sbjct: 171 AYGMIAITIYSRD 183
>gi|406978568|gb|EKE00508.1| hypothetical protein ACD_22C00002G0002 [uncultured bacterium]
Length = 193
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ G A+ KKL P+ +R + E+ K A F IL + LDLY+G+G+
Sbjct: 14 LRITSGSAKNKKLTVPEVPGIRAVQEITKLAIFSIL------GEKVLNAACLDLYAGSGN 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F++ + W + N+++ GF + + ET L A +FV
Sbjct: 68 MGLEALSRGANWCDFID-NNWNAKQAIEKNIKFCGFEE-------KAETHLSEAVKFVAN 119
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGCLVKI 285
+ +D + P Y ++++ L+ + + ++ D +I + + +M L T LV
Sbjct: 120 TENKYDVVFCDPFYDDLNHKFLIKNMGE--VLNTDGYIFFLHSDKLNMENLLTETSLVME 177
Query: 286 KDRRFGRTHLAI 297
R++G+T L+I
Sbjct: 178 SQRKYGKTLLSI 189
>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
Length = 204
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KMMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K G F + + PPY + L++ I + L+ +V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIVERQLLEPHGVVVAEHSAEAELPEEVGGLTRW 173
Query: 286 KDRRFGRTHLAIY 298
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|15895014|ref|NP_348363.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum ATCC
824]
gi|337736955|ref|YP_004636402.1| N-6 adenine-specific DNA methylase [Clostridium acetobutylicum DSM
1731]
gi|384458462|ref|YP_005670882.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|15024705|gb|AAK79703.1|AE007683_2 N6-adenine-specific methylase [Clostridium acetobutylicum ATCC 824]
gi|325509151|gb|ADZ20787.1| N6-adenine-specific methylase [Clostridium acetobutylicum EA 2018]
gi|336292932|gb|AEI34066.1| N6-adenine-specific methylase [Clostridium acetobutylicum DSM 1731]
Length = 188
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K+L PKGM+ RP ++ VK A F+I+Q+ P ++ LD++SGTG
Sbjct: 1 MRIISGKAKGRKILPPKGMETTRPTLDRVKEAMFNIIQN--DVPEAV----VLDMFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+EA SRG + ++ P + +L N+E F + T+ ++++ E
Sbjct: 55 SLGLEAASRGAKVCYLIDKSP-ITYPILKENVENLRFDE--ECKTLNMDSY-EAVRYLAS 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K F + + PPY + I + L+ K IV + + + ++ +
Sbjct: 111 KGKEFTLIFIDPPYAKEMIPPAIDLICEKKLLTKSGLIVTKIDSDEKIYEGNNEIIMVDH 170
Query: 288 RRFGRTHLAIY 298
R++G+T + Y
Sbjct: 171 RKYGKTIVCFY 181
>gi|18310712|ref|NP_562646.1| hypothetical protein CPE1730 [Clostridium perfringens str. 13]
gi|110800994|ref|YP_696416.1| methyltransferase [Clostridium perfringens ATCC 13124]
gi|168207256|ref|ZP_02633261.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|168210638|ref|ZP_02636263.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|168214206|ref|ZP_02639831.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|168217016|ref|ZP_02642641.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|169342695|ref|ZP_02863736.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|182625849|ref|ZP_02953615.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|422346400|ref|ZP_16427314.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|422874650|ref|ZP_16921135.1| putative methyltransferase [Clostridium perfringens F262]
gi|18145393|dbj|BAB81436.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110675641|gb|ABG84628.1| RNA methyltransferase, RsmD family [Clostridium perfringens ATCC
13124]
gi|169299201|gb|EDS81271.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
gi|170661356|gb|EDT14039.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
gi|170711328|gb|EDT23510.1| putative methyltransferase [Clostridium perfringens B str. ATCC
3626]
gi|170714309|gb|EDT26491.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
gi|177908883|gb|EDT71375.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
gi|182380973|gb|EDT78452.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
gi|373225945|gb|EHP48272.1| RsmD family RNA methyltransferase [Clostridium perfringens
WAL-14572]
gi|380304291|gb|EIA16580.1| putative methyltransferase [Clostridium perfringens F262]
Length = 185
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KLLSP + RP ++ VK + F ++Q + +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQ------WYIPDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG E + V+ P V VL N+E GF D H + + + +
Sbjct: 55 LGLEAASRGAKECYLVDKSP-VTFPVLKKNIENLGFGDFC--HALNTDAY-SALRSLASR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD M + PPY + I + L+ +D IV + ++ + + K +
Sbjct: 111 GKVFDLMFIDPPYMKNLIPEAIEIIEEKNLLQEDGLIVTKIDSSEEIFEGTEKIKLTKVK 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
Length = 198
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ G + I+ ERA + V K
Sbjct: 55 LGIEALSRGIERVIFVDHDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAVAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + L++ I++ L+ +V E+ ++ + G L + K
Sbjct: 110 RGLRFAVIFLDPPYKEKQWPTLLSSIAERQLLEPRGVVVAEHSAEAELPEEVGGLTRWKR 169
Query: 288 RRFGRTHLAIY 298
+G T + IY
Sbjct: 170 ETYGITGVTIY 180
>gi|374296568|ref|YP_005046759.1| RNA methyltransferase, RsmD family [Clostridium clariflavum DSM
19732]
gi|359826062|gb|AEV68835.1| RNA methyltransferase, RsmD family [Clostridium clariflavum DSM
19732]
Length = 165
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW 189
RP + VKG+ F+I+ + LDL++GTGS+GIEA+SRG FV+
Sbjct: 3 RPTSDKVKGSIFNIIAPV------IFDKDVLDLFAGTGSIGIEALSRGARRAVFVDKSRE 56
Query: 190 VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVL 249
++ NL T F + + IH + V T L Q D FD + + PPY +
Sbjct: 57 -CCQIIKENLNHTKFTERAEIHAMDVCTALSMLSQM---DSKFDIIFLDPPYGKGLVDET 112
Query: 250 MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
+A I+ + ++ +D+ I+ E+ ++ + + G L + +++G T ++ Y
Sbjct: 113 LACIADTDVLKQDTLIIAEHDVKDVVPECVGTLKNFRKQKYGDTVISFY 161
>gi|283768845|ref|ZP_06341756.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
gi|283104631|gb|EFC06004.1| RNA methyltransferase, RsmD family [Bulleidia extructa W1219]
Length = 183
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 24/196 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + + +P+G D RP ++ V+ + F IL + + +LDLY+G+G+
Sbjct: 1 MRIIAGKFRSRVIEAPRGTDTRPTLDQVRESVFSILMN------DIVDASFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA+SRG FV+ D V+ N+E +D +++ V + L + VG+
Sbjct: 55 NGLEALSRGAKRAVFVDKDRQ-AQRVIQKNIESLDVMDQATLLRVSAKQAL---DILVGQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE------YPLRTDMLDTCGCL 282
FD + + PPY + ++ Q+ + L+ +S I++E YP + +
Sbjct: 111 --SFDLVYLDPPYKKQENVWIIKQLVEKELLNSNSIIMIEADRADRYPEKIEDQKLW--- 165
Query: 283 VKIKDRRFGRTHLAIY 298
K + +GR+ L Y
Sbjct: 166 ---KKKEYGRSQLLFY 178
>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 198
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ G + I+ ERA + V K
Sbjct: 55 LGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAVAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + L++ I+ L+ +V E+ ++ + G L + K
Sbjct: 110 RGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRWKR 169
Query: 288 RRFGRTHLAIY 298
+G T + IY
Sbjct: 170 ETYGITGVTIY 180
>gi|392946605|ref|ZP_10312247.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
gi|392289899|gb|EIV95923.1| RNA methyltransferase, RsmD family [Frankia sp. QA3]
Length = 190
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++L P G RP + + F+ L + P + R DLY+G+G
Sbjct: 6 MTRIIGGTAGGRQLFVPTGRSTRPTSDRAREGLFNTLSTCVDLPGA----RVADLYAGSG 61
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S V+ DP V L N+ G + + + R Q
Sbjct: 62 AVGLEALSRGASHALLVDHDPAAV-RALRRNVAALGLSGAEIL-----QAPVSRVVQNTS 115
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
D P+ M + PPY D E+ ++A++ A + D VVE R+ + L +
Sbjct: 116 GD-PYHVMFLDPPYAMSDLELGEVLAKLQSGAWLTADGVCVVERSHRSGPVAWPDGLCAL 174
Query: 286 KDRRFG 291
+DRR+G
Sbjct: 175 RDRRYG 180
>gi|297559190|ref|YP_003678164.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296843638|gb|ADH65658.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 193
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A +++ P+G + RP + + A F +QS G SL R +DLY+G+G
Sbjct: 1 MTRIIAGTAGGRRISVPEGRNTRPTSDRAREALFSSVQSDLG---SLDGARVMDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + VE D + VL N++ G + +R E+ VG
Sbjct: 58 AIGLEALSRGAAHALLVEADR-RAAQVLRDNIQTLGLPGARLVA--------DRVERVVG 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVE 268
D P+D + PPY D EV ++A + + +D+ +VVE
Sbjct: 109 ADNTGDPYDVVVADPPYAVTDAEVAGVLADLVGRGWLAEDAVVVVE 154
>gi|170757382|ref|YP_001782037.1| methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246594|ref|ZP_19209911.1| methyltransferase [Clostridium botulinum CFSAN001628]
gi|169122594|gb|ACA46430.1| RNA methyltransferase, RsmD family [Clostridium botulinum B1 str.
Okra]
gi|428756387|gb|EKX78942.1| methyltransferase [Clostridium botulinum CFSAN001628]
Length = 185
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ P +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSPETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKELLNKEGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|307718496|ref|YP_003874028.1| hypothetical protein STHERM_c08060 [Spirochaeta thermophila DSM
6192]
gi|306532221|gb|ADN01755.1| hypothetical protein STHERM_c08060 [Spirochaeta thermophila DSM
6192]
Length = 180
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + + +L P G+ +RP M ++ A F L + G +LDL++G+G
Sbjct: 4 MRITGGIHKGRTVLCPPGI-IRPAMARMREALFSSLGNMEG-------RSFLDLFAGSGI 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
+ IEA SRG S V VE D VL NL G + +E AE ++
Sbjct: 56 MAIEAASRGASPVVCVEKD-RRKRPVLERNLRELG---------IDGRILIEPAEHYIRH 105
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
PFD + + PP+ + L+ +S SAL+ + + I++ +P + + T G L + K+
Sbjct: 106 ATSPFDVIYLDPPFAYPHKDRLLELVSSSALLHETTVILIHHPSKDPLPGTPGRLERFKE 165
Query: 288 RRFGRTHLAIY 298
+ FG+++++ Y
Sbjct: 166 KHFGQSYVSFY 176
>gi|423367976|ref|ZP_17345408.1| RsmD family RNA methyltransferase [Bacillus cereus VD142]
gi|401082837|gb|EJP91102.1| RsmD family RNA methyltransferase [Bacillus cereus VD142]
Length = 188
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRLQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKGQKIVSLISVMDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|350265810|ref|YP_004877117.1| methyltransferase [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598697|gb|AEP86485.1| putative methyltransferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + + NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTIK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTMIDEYQMLEEDGFIVAEHDREVELPETVGDLVMARKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|160892739|ref|ZP_02073529.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
gi|156865780|gb|EDO59211.1| RNA methyltransferase, RsmD family [Clostridium sp. L2-50]
Length = 185
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + MD RP + +K F+I+ L +LDL+SG+G+
Sbjct: 1 MRVIAGTARSLRLETIDTMDTRPTTDRIKETLFNIISR------ELPDCTFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT---VRVETFLERAEQF 225
+ IEA+SRG + VE + V + + NLE+TG D + + T V LER+
Sbjct: 55 IAIEALSRGAKQAVLVEQNRKAV-DCINRNLEFTGLKDKARVITGDCVAAIDSLERSGLV 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
FD + + PPY + + ++ +++ S +V K+++I+VE L T+
Sbjct: 114 ------FDIIFMDPPYGKLLEKQVLNRLASSGIVDKNTWIIVESDLNTE 156
>gi|427414336|ref|ZP_18904526.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
gi|425714712|gb|EKU77715.1| RsmD family RNA methyltransferase [Veillonella ratti
ACS-216-V-Col6b]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ L +PKGM RP + V+ + F++L + G ++ LDL+SGTG+
Sbjct: 1 MRIIAGRAKGHTLKAPKGMSTRPTQDRVRESIFNVLSNYGLIETTV-----LDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA+SRG S V+ + ++ N E D + +ET A+Q G+
Sbjct: 56 FGLEAVSRGASLAVCVDKR---TARIIKANTEHCHMEDAVEVIPTSIET---AAKQLAGR 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FDY+ PPY M + L+ ++ ++VE+ ++ G + ++++
Sbjct: 110 Q--FDYIFADPPYEVDLVAATMTVVVNQQLLKENGMLIVEHHENEPLVLPDGWSL-VREQ 166
Query: 289 RFGRTHLAIYGP 300
RFG T ++ P
Sbjct: 167 RFGYTKVSYCVP 178
>gi|313892650|ref|ZP_07826237.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|329121287|ref|ZP_08249914.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
gi|313119047|gb|EFR42252.1| RNA methyltransferase, RsmD family [Dialister microaerophilus UPII
345-E]
gi|327470221|gb|EGF15684.1| ribosomal RNA small subunit methyltransferase D [Dialister
micraerophilus DSM 19965]
Length = 186
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +L SP+GM+ RP + V+ + F++L + G L LD+++GTG+
Sbjct: 1 MKIIAGTAKGTQLKSPEGMNTRPTLGKVRESIFNVLSNVG-----LLETNILDIFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ V +NV+ N F + I V T L+ V +
Sbjct: 56 MGLEALSRGASTATFIDK---VTANVIKENANRCKFTNKVEILKKEVHTALK-----VLQ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+DY+ + PPY +M I L ++ I+VE+
Sbjct: 108 KKHYDYIFMDPPYKKGYVNDIMQCIFACDLPRDNAIIIVEH 148
>gi|404370900|ref|ZP_10976215.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
gi|226912978|gb|EEH98179.1| RsmD family RNA methyltransferase [Clostridium sp. 7_2_43FAA]
Length = 184
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F I+Q G P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGRKLIPPATMETRPTLDRVKEAMFSIIQ--GYIPDAV----AVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP----NLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ ++ SN P N+E F D + + ++++ A +
Sbjct: 55 LGLEAASRGAKEVYLIDK-----SNTTFPLLKQNIENLKFQDFCT--PLNMDSY--DALK 105
Query: 225 FVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ K G FD + + PPY + I ++ ++ ++ IV + ++ D +
Sbjct: 106 MLNKKGKIFDIIFIDPPYCKEMIPEAIKIIKENNMLKENGIIVTKIDSIEEIYDGYKDIK 165
Query: 284 KIKDRRFGRTHLAIY 298
++ R++G T + Y
Sbjct: 166 LLQSRKYGNTTVCFY 180
>gi|229075686|ref|ZP_04208668.1| Methyltransferase [Bacillus cereus Rock4-18]
gi|228707462|gb|EEL59653.1| Methyltransferase [Bacillus cereus Rock4-18]
Length = 188
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEAISRG + FV+ D + V+ NLE IH + E + AE+
Sbjct: 55 LGIEAISRGIEKTIFVDRDSKAIK-VIHQNLESC------RIHE-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ ++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK
Sbjct: 107 LIKREMSFDLILIDPPYKEQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNLVK 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T ++IY
Sbjct: 167 VRAENYGITAISIY 180
>gi|403515269|ref|YP_006656089.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
gi|403080707|gb|AFR22285.1| hypothetical protein R0052_07490 [Lactobacillus helveticus R0052]
Length = 182
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 11/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNKTRPTSDKVKESLFNSLGQF------FNGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V+++ S ++ N+ T + S++ +R L + F
Sbjct: 55 LGIEAVSRGYDHASLVDINHAACS-IIKKNVALTKEENRFSVYNMRSNAAL---KLFAEN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M Q++K L+ + IV E T++ D G + IK+
Sbjct: 111 QEKFDLVFLDPPYAKEKIAKDMLQMNKLGLLNSSATIVAETDDHTELGDISGFSL-IKEH 169
Query: 289 RFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 170 HLGKTIVRIYRKD 182
>gi|325263996|ref|ZP_08130729.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
gi|324031034|gb|EGB92316.1| RNA methyltransferase, RsmD family [Clostridium sp. D5]
Length = 189
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+R +L + G+D RP + +K F+++ S+ +LDL++G+G
Sbjct: 1 MRVIAGSAKRLQLKTLDGLDTRPTTDRIKETLFNMI------APSVYGSVFLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E FVE +P ++ V NL++T + T V L + E
Sbjct: 55 IGIEALSRGAREAVFVENNPKAMACVK-ENLKYTKLEAKALTLTREVMAALYQLEG---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD++ + PPY + + +S S LV +D+ I+VE TD
Sbjct: 110 EKVFDFIFMDPPYDRELEKRALEYLSGSQLVYEDTVIIVEASRETDF 156
>gi|228476280|ref|ZP_04060982.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|314936688|ref|ZP_07844035.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|418620386|ref|ZP_13183190.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
gi|228269683|gb|EEK11185.1| RNA methyltransferase, RsmD family [Staphylococcus hominis SK119]
gi|313655307|gb|EFS19052.1| RNA methyltransferase, RsmD family [Staphylococcus hominis subsp.
hominis C80]
gi|374822516|gb|EHR86536.1| RNA methyltransferase, RsmD family [Staphylococcus hominis VCU122]
Length = 183
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKPLESLEGRNTRPTMDKVKEGIFNSLHEVYGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIQANLKQLNLEEQSEVYKNNADRALKAINK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD++ + PPY + + QISK L+ + I+ E+
Sbjct: 109 DIQFDFIFLDPPYNKGLIDKALDQISKFNLLKEHGIIICEF 149
>gi|448237266|ref|YP_007401324.1| rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445206108|gb|AGE21573.1| rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 204
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G + ++L + GM RP + VK A F+++ G LDL++G+
Sbjct: 5 KAMRVISGTCKGRRLQAVPGMSTRPTTDKVKEAIFNMIGP------YFSGGNGLDLFAGS 58
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG V FV+ D V V N+ G + I+ ERA + V
Sbjct: 59 GGLGIEALSRGIERVIFVDQDRKAVQTVR-KNVAACGLEKRAEIYC----NDAERALKAV 113
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K G F + + PPY + L++ I+ L+ +V E+ ++ + G L +
Sbjct: 114 AKRGLRFAVIFLDPPYKEKQWPTLLSSIAGRQLLEPHGVVVAEHSAEAELPEEVGGLTRW 173
Query: 286 KDRRFGRTHLAIY 298
K +G T + IY
Sbjct: 174 KRETYGITGVTIY 186
>gi|302525045|ref|ZP_07277387.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
gi|302433940|gb|EFL05756.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 28/209 (13%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ GKA ++L + PKG RP E V+ A F+ L+ AG L R LDLY+G+
Sbjct: 1 MTRIVAGKAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELDGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG ++ FVE D ++VL N+ D+ TVR + E V
Sbjct: 55 GALGLEALSRGAADAWFVEADR-RAADVLRGNVA-----DLRLGGTVRA----GQVETVV 104
Query: 227 GKDGP--FDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P FD + PPY AVD L +A + + + + V+E R D
Sbjct: 105 AAPAPVQFDVVLADPPY-AVDAASLGSVLASLHSGGWLAEGALTVIERAARDGAPDWPST 163
Query: 282 LVKIKDRRFGRTHLAIYGPDWAQKKRKSE 310
++D+R+G T A+Y WA+ SE
Sbjct: 164 FKPLRDKRYGDT--ALY---WAEYDSSSE 187
>gi|374855681|dbj|BAL58536.1| N6-adenine-specific methylase [uncultured candidate division OP1
bacterium]
Length = 189
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
++++GG+ R + L+ P +RPM E V+ A FDIL S+ R+LDL++G
Sbjct: 1 MRIIGGRLRGRLLIEPTPQIKKFLRPMREAVRAALFDILGD------SVTDARFLDLFAG 54
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+GIEA+SRG FV+ ++ NL+ G +S++ + L+ E F
Sbjct: 55 TGSIGIEALSRGARSCVFVDSSE-RACQIIRENLKNLGLERCASVYRLDA---LKAIELF 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ FD + + PPY +AQ++ L + +V E + + G L
Sbjct: 111 ARQGEKFDLVFLGPPYGQELAHKTLAQLAAHPLCSPGALVVTEIFKKEKVQTEYGDLKSF 170
Query: 286 KDRRFGRTHLAIY 298
R +G L Y
Sbjct: 171 AVRTYGDNSLWFY 183
>gi|56609587|gb|AAW03320.1| hypothetical protein [Cystobacter fuscus]
Length = 185
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 20/196 (10%)
Query: 109 LQVLGGKARRKKLLSPK--GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGSAKGRALAGPKTTSKHIRPTADRVRETLFNVLGQ------WLEGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAE 223
G++G+EA+SRG V V+ D ++ + N + GF + RVE + RA
Sbjct: 55 GALGLEAVSRGAKGVVLVDSDREALA-LCRANTDTLGF-------SARVEVLAQPVARAL 106
Query: 224 QFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ +G+ G F + PPY A E ++ +S L+ ++ +V+E+ R +
Sbjct: 107 ETLGRRGDRFQLIFADPPYAARVVETVLEGLSAHQLLAEEGTVVIEHDKREPAPEAHAGF 166
Query: 283 VKIKDRRFGRTHLAIY 298
++ RRFG T ++++
Sbjct: 167 TRVDQRRFGDTLVSLF 182
>gi|299144504|ref|ZP_07037583.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517592|gb|EFI41332.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 181
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KLLSP+ + RP + +K F++L + LDL+SG+GS
Sbjct: 1 MRVISGKNRGLKLLSPRDLRTRPTEDRIKENVFNLL------GQNFFDANVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +FV+ D + + + N++ + + V + L+ ++ G+
Sbjct: 55 IGIEFLSRGAKFCYFVDNDKDAI-DTINKNIKKA---HCENNYKVILSGALKVMDRLCGE 110
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FDY+ + PPY + Y + I + L+ KD I++E + LD L IK+
Sbjct: 111 --KFDYIYIDPPYDNSELYLKSIEGILEKNLLEKDGIIIIEED-SSKKLDFTKYLNLIKE 167
Query: 288 RRFGRTHLAIY 298
+++G T ++I+
Sbjct: 168 KKYGSTSVSIW 178
>gi|297717850|gb|ADI50068.1| putative methyltransferase [Candidatus Odyssella thessalonicensis
L13]
Length = 193
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVG 227
+G+EA+SRG + V FVE P ++N+L NL+ F + +H + + L++A +
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLIISDIRKLKKAAR--- 112
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
D + + PPY ++++ L + ++ + D+ IV E ++TD+ C +
Sbjct: 113 ---AMDLVFLDPPYGKGLEFQALPYLVEQN-WINSDTVIVYETEVQTDIAPLLACTAVLD 168
Query: 287 DRRFGRT 293
+RR+G T
Sbjct: 169 ERRYGGT 175
>gi|423483521|ref|ZP_17460211.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-2]
gi|401141072|gb|EJQ48627.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-2]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKGQKIVSLISVMDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|325972733|ref|YP_004248924.1| methyltransferase [Sphaerochaeta globus str. Buddy]
gi|324027971|gb|ADY14730.1| methyltransferase [Sphaerochaeta globus str. Buddy]
Length = 186
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG R + + P G+ +RP M++++ + F IL +L WLDL++G+G
Sbjct: 1 MRITGGIYRGRTVACPPGI-IRPAMDMMRESLFSIL-------GNLEGKSWLDLFTGSGC 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
VGIEA SRG S VH VE D L+ T L+ S+ + F+ +F+
Sbjct: 53 VGIEAASRGASLVHLVEKD----------RLKRTTILENISMVESEITLFMADVHRFIPT 102
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL--RTDMLDTCGCLVKI 285
+D + PP+ L + K L+ ++ YP + + G LV
Sbjct: 103 AKRQYDIVYADPPFPMQGKVGLAQAVDKQKLLTPTGLFIIHYPSEEKGQWPEQVGNLVCY 162
Query: 286 KDRRFGRTHLAIY 298
R++GR+ L Y
Sbjct: 163 DQRKYGRSTLRFY 175
>gi|216264056|ref|ZP_03436050.1| putative methyltransferase [Borrelia afzelii ACA-1]
gi|215980100|gb|EEC20922.1| putative methyltransferase [Borrelia afzelii ACA-1]
Length = 189
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIISSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S H VE + S L+ N + V + + F +RAE F+
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ D L+ I K ++ I++ P D+
Sbjct: 115 KKDLFYDFIYLDPPFNYKDKINLLEIILKGKILNDKVNIIMHCPFGEDL 163
>gi|399047078|ref|ZP_10739210.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|433546116|ref|ZP_20502454.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
gi|398054911|gb|EJL47009.1| RNA methyltransferase, RsmD family [Brevibacillus sp. CF112]
gi|432182732|gb|ELK40295.1| hypothetical protein D478_20629 [Brevibacillus agri BAB-2500]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R +KL + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVIAGEHRGRKLAAVPGSGTRPTTDKVKESIFNMI-------GPYFDGGWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG + FVE D + V+ N+ + + ++ + E + Q
Sbjct: 54 SLGIEALSRGADKAVFVERDAKAFA-VVKQNVSACRLDEYAELYRMDAERAI---RQLAK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ PF+ + + PPY + Q+ L+ + ++IV E+ + D G VK +
Sbjct: 110 RAQPFELVFLDPPYAKQRIVEEIEQLQALGLLAEGAWIVAEHDSKDAFPDAIGDCVKDRQ 169
Query: 288 RRFGRTHLAIYGPD 301
+G T + +Y D
Sbjct: 170 ATYGDTAVTLYYYD 183
>gi|228992665|ref|ZP_04152591.1| Methyltransferase [Bacillus pseudomycoides DSM 12442]
gi|228998711|ref|ZP_04158298.1| Methyltransferase [Bacillus mycoides Rock3-17]
gi|229006213|ref|ZP_04163899.1| Methyltransferase [Bacillus mycoides Rock1-4]
gi|228755054|gb|EEM04413.1| Methyltransferase [Bacillus mycoides Rock1-4]
gi|228761179|gb|EEM10138.1| Methyltransferase [Bacillus mycoides Rock3-17]
gi|228766997|gb|EEM15634.1| Methyltransferase [Bacillus pseudomycoides DSM 12442]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKEAIFNMIGP------YFEGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ D V V+ NLE D + ++ E L + + +
Sbjct: 55 LGIEALSRGVDKAIFVDRDNKAVK-VIHQNLESCRVHDQAEVYRNDAERAL---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ +D I+ E+ + + G LVK++
Sbjct: 111 ELSFDLILLDPPYKDQKIISLISVMDQHGLLNEDGLIMAEHGDDVVLPEAIGGLVKVRAE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 NYGMTAISIY 180
>gi|261408047|ref|YP_003244288.1| methyltransferase [Paenibacillus sp. Y412MC10]
gi|261284510|gb|ACX66481.1| methyltransferase [Paenibacillus sp. Y412MC10]
Length = 201
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 10/198 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L S G RP + VK + F ++ G LDL++GTG
Sbjct: 1 MRVVSGSAKGRPLKSVPGTSTRPTTDKVKESIFSMIGP------YFEGGIALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+++P +S + NL+ + + ++ L+ E+ +
Sbjct: 55 LGIEALSRGMDRAVFVDVEPKSISTIK-DNLKAARLEESAEVYRNDAARALKALEK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + LM +++ L+ + +V+EY + + G I+
Sbjct: 111 GYGFDLVFLDPPYRFKNGDELMLDMAERGLLQDSALVVLEYESSYNYAEEFGDFHCIRTA 170
Query: 289 RFGRTHLAIYGPDWAQKK 306
++G T ++IY D AQ +
Sbjct: 171 KYGETAVSIYRYDTAQDQ 188
>gi|239906807|ref|YP_002953548.1| hypothetical protein DMR_21710 [Desulfovibrio magneticus RS-1]
gi|239796673|dbj|BAH75662.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 200
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++GG+ R K++ G+ RP V+ A F +L + G A R LD Y+G
Sbjct: 1 MRIIGGRLGGRVIKVIDSPGL--RPATGRVREALFSMLAARG---ALFHGARVLDCYAGA 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-LDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG + F+E P V+ VL NL G DV+ + V L R
Sbjct: 56 GSVGIEALSRGAGKAVFIERSP-AVAKVLKENLRGLGLGPDVAQVVEADVVKALGRL--- 111
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC-----G 280
G FD +++ PPY +A+I+ L+ +V E D+ +T
Sbjct: 112 --SGGYFDLIAIDPPYGQDLLPPTLAKIAALDLIAPGGIVVAEIEAGLDLPETAVPPVFD 169
Query: 281 CLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIP 314
CL DR +G+T + ++ P E IP
Sbjct: 170 CL---TDRTYGQTRIILWTPRNPASPSTPEPSIP 200
>gi|253700934|ref|YP_003022123.1| methyltransferase [Geobacter sp. M21]
gi|251775784|gb|ACT18365.1| methyltransferase [Geobacter sp. M21]
Length = 193
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+AR ++L +PK M VRP + VK A F IL S G + R LD+++GTG+
Sbjct: 1 MRVIAGEARGRQLFAPKTMRVRPTSDRVKEALFSILLSRLGDLGGM---RVLDIFAGTGN 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET---FLERAEQF 225
+GIEA+SRG F++ + + NLE T F + + T +L R E+
Sbjct: 58 LGIEALSRGADCAVFIDAHRE-SAEAIRKNLETTRFAEKGKVVTQDAAAALKWLARGEK- 115
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
PF + + PPY E L+ +S S L+ S +V E+ + ++ + G L +
Sbjct: 116 -----PFHLVFLDPPYGEGHTERLLELLSSSPLIDAGSTVVAEFAAKEEIPSSFGRLRES 170
Query: 286 KDRRFGRTHLAI 297
+ R +G T L+
Sbjct: 171 ERRVYGDTALSF 182
>gi|72161051|ref|YP_288708.1| hypothetical protein Tfu_0647 [Thermobifida fusca YX]
gi|71914783|gb|AAZ54685.1| Conserved hypothetical protein 95 [Thermobifida fusca YX]
Length = 193
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G A ++L P+G RP + V+ A F + S G A LR LDLY+G+G
Sbjct: 1 MTRIIAGTAGGRRLAVPRGRTTRPTSDRVREALFASVLSELGTLAGLRV---LDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + VE D + V+ N+ G L + + RVE L R G
Sbjct: 58 AIGLEALSRGAAHALLVEADRRAAA-VIDRNIAQLG-LPGARLVVDRVERVLSR-----G 110
Query: 228 KD-GPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
D GP+D++ PPY D EV ++ + + + IVVE R + + K
Sbjct: 111 PDGGPYDFVFADPPYAIEDREVTAVLEALRDHGWLTAGTLIVVERSSRKEPMGWPDGYQK 170
Query: 285 IKDRRFGRTHL 295
K R++G T L
Sbjct: 171 GKVRQYGETSL 181
>gi|311068020|ref|YP_003972943.1| hypothetical protein BATR1942_05290 [Bacillus atrophaeus 1942]
gi|419824003|ref|ZP_14347534.1| hypothetical protein UY9_21324 [Bacillus atrophaeus C89]
gi|310868537|gb|ADP32012.1| hypothetical protein BATR1942_05290 [Bacillus atrophaeus 1942]
gi|388471818|gb|EIM08610.1| hypothetical protein UY9_21324 [Bacillus atrophaeus C89]
Length = 185
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRALKAVPGTSTRPTTDKVKESIFNMI------GPYFEGGRALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + + V NL+ + + ++ E L A + +
Sbjct: 55 LGIEALSRGFDHCVFVDREFKAIQTVK-ANLKTLDLIKSADVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L++ I + ++ D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFHGIFLDPPYKEQKLKALLSSIDEHQMLEDDGFIVTEHDKGVELPETIGGLVLARQE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 MYGLTGVSIY 180
>gi|301059171|ref|ZP_07200111.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
gi|300446719|gb|EFK10544.1| RNA methyltransferase, RsmD family [delta proteobacterium NaphS2]
Length = 186
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ + + L +PK +D+RP V+ A F+I+ L R LDL+SGTG
Sbjct: 1 MKITGGQIKGRILAAPKNLDIRPSSNKVRAAIFNIIGQ------DLSGTRVLDLFSGTGL 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ ++ ++ NL G+ SI + L + F+
Sbjct: 55 LGIEALSRGAVLGVFVDYAKQSLA-LIRRNLLLCGYERKGSICKWDLAKGLPKNRAFIA- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY + L++++++SA + + IV+E + + +C L+ ++ R
Sbjct: 113 -AKYDLVFLDPPYGSHLIAGLISKLARSARLAPGALIVLETG-KDSITLSCSPLILVETR 170
Query: 289 RFGRTHLAIY 298
+G T ++I+
Sbjct: 171 IYGDTKISIF 180
>gi|329929990|ref|ZP_08283629.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF5]
gi|328935512|gb|EGG31982.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF5]
Length = 208
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 10/204 (4%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
+ + ++V+ G A+ + L S G RP + VK + F ++ G LDL
Sbjct: 2 KRVNEAVRVVSGSAKGRPLKSVPGTSTRPTTDKVKESIFSMIGP------YFEGGIALDL 55
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
++GTG +GIEA+SRG F++++P +S + NL+ + + ++ L+
Sbjct: 56 FAGTGGLGIEALSRGMDRAVFIDVEPKSISTIK-DNLKAARLEESAEVYRNDAARALKAL 114
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
E+ + FD + + PPY + + LM +++ L+ + +V+EY + + G
Sbjct: 115 EK---RGYGFDLVFLDPPYRFKNGDELMLDMAERGLLQDSALVVLEYESSYNYAEEFGDF 171
Query: 283 VKIKDRRFGRTHLAIYGPDWAQKK 306
I+ ++G T ++IY D AQ +
Sbjct: 172 HCIRTAKYGETAISIYRYDTAQDQ 195
>gi|296331076|ref|ZP_06873550.1| putative enzyme with adenosyl binding site [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674231|ref|YP_003865903.1| hypothetical protein BSUW23_07730 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151720|gb|EFG92595.1| putative enzyme with adenosyl binding site [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412475|gb|ADM37594.1| putative enzyme with adenosyl binding site [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 184
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFEGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKNAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G L+ +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVGDLLMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|111115030|ref|YP_709648.1| hypothetical protein BAPKO_0213 [Borrelia afzelii PKo]
gi|410678963|ref|YP_006931365.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
gi|110890304|gb|ABH01472.1| conserved hypothetical protein [Borrelia afzelii PKo]
gi|408536351|gb|AFU74482.1| hypothetical protein BafHLJ01_0219 [Borrelia afzelii HLJ01]
Length = 189
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + +K+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGRKILFPKTGAIRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S H VE + S L+ N + V + + F +RAE F+
Sbjct: 65 IMSIEALSRGASLAHLVECNKKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ D L+ I K ++ I++ P D+
Sbjct: 115 KKDLFYDFIYLDPPFNYKDKINLLEIILKGKILNDKVNIIMHCPFGEDL 163
>gi|311029899|ref|ZP_07707989.1| putative methyltransferase [Bacillus sp. m3-13]
Length = 228
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + ++L + GM+ RP + VK + F+++ G LDL+ G+GS
Sbjct: 39 MRVVSGKWKGRQLKAVPGMNTRPTTDKVKESVFNMI------GPYFDGGLALDLFGGSGS 92
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +V FV+ D + + I + ++V VR L++ E
Sbjct: 93 LGIEALSRGVDKVIFVDKDGKAIQTIKQNIETFQVGEQVEVYRNDAVRALNALKKREI-- 150
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
FD + + PPY + E L+ +IS L+ ++ I+ E+ ++ + G + +
Sbjct: 151 ----KFDLILLDPPYKKHNLEELIHKISDFDLLEQNGLIMAEHSNEVELPEILGAFQRTR 206
Query: 287 DRRFGRTHLAIYGPDWAQK 305
+G T +++Y +K
Sbjct: 207 KEVYGLTVISVYHHSSGEK 225
>gi|229098400|ref|ZP_04229345.1| Methyltransferase [Bacillus cereus Rock3-29]
gi|229104492|ref|ZP_04235159.1| Methyltransferase [Bacillus cereus Rock3-28]
gi|229117426|ref|ZP_04246802.1| Methyltransferase [Bacillus cereus Rock1-3]
gi|407706451|ref|YP_006830036.1| methylthioribose-1-phosphate isomerase [Bacillus thuringiensis
MC28]
gi|423378217|ref|ZP_17355501.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1O-2]
gi|423441338|ref|ZP_17418244.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X2-1]
gi|423448506|ref|ZP_17425385.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5O-1]
gi|423464412|ref|ZP_17441180.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-1]
gi|423533754|ref|ZP_17510172.1| RsmD family RNA methyltransferase [Bacillus cereus HuB2-9]
gi|423540990|ref|ZP_17517381.1| RsmD family RNA methyltransferase [Bacillus cereus HuB4-10]
gi|423547228|ref|ZP_17523586.1| RsmD family RNA methyltransferase [Bacillus cereus HuB5-5]
gi|423622990|ref|ZP_17598768.1| RsmD family RNA methyltransferase [Bacillus cereus VD148]
gi|228666036|gb|EEL21502.1| Methyltransferase [Bacillus cereus Rock1-3]
gi|228678934|gb|EEL33144.1| Methyltransferase [Bacillus cereus Rock3-28]
gi|228685017|gb|EEL38950.1| Methyltransferase [Bacillus cereus Rock3-29]
gi|401129100|gb|EJQ36783.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5O-1]
gi|401172178|gb|EJQ79399.1| RsmD family RNA methyltransferase [Bacillus cereus HuB4-10]
gi|401178949|gb|EJQ86122.1| RsmD family RNA methyltransferase [Bacillus cereus HuB5-5]
gi|401259763|gb|EJR65937.1| RsmD family RNA methyltransferase [Bacillus cereus VD148]
gi|401636483|gb|EJS54237.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1O-2]
gi|402417999|gb|EJV50299.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X2-1]
gi|402420679|gb|EJV52950.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-1]
gi|402463973|gb|EJV95673.1| RsmD family RNA methyltransferase [Bacillus cereus HuB2-9]
gi|407384136|gb|AFU14637.1| Methyltransferase [Bacillus thuringiensis MC28]
Length = 188
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEAISRG + FV+ D + V+ NLE IH + E + AE+
Sbjct: 55 LGIEAISRGIEKAIFVDRDSKAIK-VIHQNLESC------RIHE-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ ++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK
Sbjct: 107 LIKREMSFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNLVK 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T ++IY
Sbjct: 167 VRAENYGITAISIY 180
>gi|384564907|ref|ZP_10012011.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
gi|384520761|gb|EIE97956.1| RNA methyltransferase, RsmD family [Saccharomonospora glauca K62]
Length = 185
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 19/165 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+AR + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRARGRILRVPPKG--TRPTTELVREALFSALEAAD----ELTDVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + +VET + Q
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIAKVGLGGV--VRQGKVETVV---SQPA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVE 268
G+ PFD + PPY AVD E V++ Q+ + + + + +VVE
Sbjct: 109 GQ--PFDLVLADPPY-AVDAETLGVVLTQLVDNGWLAEGALVVVE 150
>gi|423470144|ref|ZP_17446888.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-2]
gi|402437396|gb|EJV69420.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6O-2]
Length = 188
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ F+ + + PPY L++ I + L+ KD I+ E+ + D+ G LVK++
Sbjct: 110 REISFNLILIDPPYKGQKIVSLISVIDQHGLLNKDGIIMAEHGDDVVLPDSIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|269127643|ref|YP_003301013.1| methyltransferase [Thermomonospora curvata DSM 43183]
gi|268312601|gb|ACY98975.1| methyltransferase [Thermomonospora curvata DSM 43183]
Length = 186
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G AR ++L P G D RP + + F + G L R DL++G+G+V
Sbjct: 3 RVIAGTARGRRLAVPAGRDTRPTSDRAREGLF---ATVGALLGPLEGLRVADLFAGSGAV 59
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
G+EA+SRG + VE P V V+ N+E G L + + RVE L R +
Sbjct: 60 GLEALSRGAACALLVESHPRAV-KVIRRNIETLG-LPGAHLVADRVERVLRRPPEE---- 113
Query: 230 GPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
P+D + + PPY D V L+ + +D+ +VVE R + L +D
Sbjct: 114 -PYDLIFLDPPYALADEAVTGLLETLRGQGWTAEDALVVVERSARGEALRWPQGYAPDRD 172
Query: 288 RRFGRTHL 295
RR+G L
Sbjct: 173 RRYGEAVL 180
>gi|315500442|ref|YP_004089245.1| methyltransferase [Asticcacaulis excentricus CB 48]
gi|315418454|gb|ADU15094.1| methyltransferase [Asticcacaulis excentricus CB 48]
Length = 192
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+G + RP + + A F+IL+ A P +L R +D+++G+G+
Sbjct: 1 MRIVGGEFRGRALSAPEGQNTRPTSDRARQAVFNILEHAEFAP-NLNGARVMDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ D + N+E G V+ IH R G
Sbjct: 60 LGLEAMSRGAAFCLFVDTDD-AARGAIRDNVEAFGLFGVTRIHRRDATQLGVRPG---GA 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + + + ++ IVVE D T L +I D
Sbjct: 116 SEAFDLVFMDPPYRKGLVQAALEALRNGNWLSHEALIVVEMANDEDFFAT--ELWQIIDT 173
Query: 289 RFGRTHLAIYGP 300
R YGP
Sbjct: 174 R-------TYGP 178
>gi|451818121|ref|YP_007454322.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451784100|gb|AGF55068.1| rRNA methyltransferase RsmD [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 185
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG SEV+ + P + NV NL + F + + + ++
Sbjct: 55 LGLEAASRGASEVYLFDKSSTTFPLLKQNV--DNLRFQDFC-----FPINTDAY-SGLKK 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
K FD + + PPY M I ++ ++ +D IV + ++ D +
Sbjct: 107 LADKGKKFDIIFIDPPYCKEMIPEAMKIIKENKMLKEDGIIVTKIDTIEEIYDGYEDINL 166
Query: 285 IKDRRFGRTHLAIY 298
IK++++G T + Y
Sbjct: 167 IKNKKYGNTTVCYY 180
>gi|402818478|ref|ZP_10868061.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
gi|402503944|gb|EJW14476.1| putative rRNA methyltransferase YlbH [Paenibacillus alvei DSM 29]
Length = 196
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L GM RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVISGTARGRSLKPVPGMGTRPTTDKVKEALFSMIGP------YFDGGYVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ DP V V+ N++ G + S ++ + L + +
Sbjct: 55 LGIEALSRGAGQGIFVDKDPKAVE-VVKHNVQTAGVANRSEVYRNDAKRAL---KALAKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D F+ + + PPY D + L+ + L+ + + IVVE+ + + G L K
Sbjct: 111 DIAFELIFLDPPYRLKDADELLEGMWNDGLISESAIIVVEHDSKHVYPNEIGPLYVWKKA 170
Query: 289 RFGRTHLAIY 298
+G + +Y
Sbjct: 171 EYGEIGVTVY 180
>gi|289551063|ref|YP_003471967.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|385784684|ref|YP_005760857.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|418414359|ref|ZP_12987574.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418637514|ref|ZP_13199833.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|289180595|gb|ADC87840.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
lugdunensis HKU09-01]
gi|339894940|emb|CCB54244.1| putative methylase [Staphylococcus lugdunensis N920143]
gi|374838760|gb|EHS02295.1| RNA methyltransferase, RsmD family [Staphylococcus lugdunensis
VCU139]
gi|410876966|gb|EKS24863.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 183
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ + + V+ NL+ + + ++ + L+ + +
Sbjct: 53 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D FDY+ + PPY + + QI L+ + I+ E+ + D+
Sbjct: 109 DIQFDYIFLDPPYNKGLIDKALIQIETFNLLKESGIIICEFSHQEDI 155
>gi|386866466|ref|YP_006279460.1| hypothetical protein BANAN_01375 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385700549|gb|AFI62497.1| hypothetical protein BANAN_01375 [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 191
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +P+ + RP + K A F L S G L R LDL+ GTG+
Sbjct: 1 MRVITGRFKGVPLTTPRS-ETRPTTDRTKEAMFSRLDSTG----ILAGARVLDLFGGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD---PWVVSNVLIP---NLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG +E+ VE ++++ L N W + +H + E + +A
Sbjct: 56 LGIEALSRGANELTVVEASGPAAKLIAHTLTALRRNPAWEEGMSAHIVH-AKAERYAAKA 114
Query: 223 EQFVGKDGPFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ VG+ PFD + + PPY + D E L+ ++ LV +D IV+E +RT+ +
Sbjct: 115 K--VGE--PFDMVLIDPPYAFSTADCERLLCDLTARDLVARDGMIVLERSVRTERPEAPA 170
Query: 281 CLVKIKDRRFGRTHLAIY 298
R +G T + Y
Sbjct: 171 GWQITDARDYGETAVYTY 188
>gi|386853613|ref|YP_006202898.1| hypothetical protein KK9_0208 [Borrelia garinii BgVir]
gi|365193647|gb|AEW68545.1| Hypothetical protein KK9_0208 [Borrelia garinii BgVir]
Length = 178
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDFLGK 104
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ ISK ++ I++ P D+
Sbjct: 105 KDLFYDFIYLDPPFNYKNKINLLEIISKGKILNDKVNIIMHCPFGEDL 152
>gi|384175242|ref|YP_005556627.1| putative methyltransferase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349594466|gb|AEP90653.1| putative methyltransferase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 184
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-TNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ +D FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTMIDEYQMLEEDGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 TYGLTGVSIY 180
>gi|440225672|ref|YP_007332763.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
gi|440037183|gb|AGB70217.1| RNA methyltransferase, RsmD family [Rhizobium tropici CIAT 899]
Length = 188
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L +PK D+RP + + + F+IL A P ++ R +D+++GTG+
Sbjct: 1 MRVVGGEFRGRSLATPKSNDIRPTADRTRESLFNILSHA--YPEAIDGTRMMDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA SRGC V FVE S+V L W +D +H R A V
Sbjct: 59 VGLEAASRGCRHVLFVE------SSVEGRGLLWEN-IDALGLHG-RTRMLRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD++ PPY
Sbjct: 111 GNLEPFDFLFADPPY 125
>gi|319649691|ref|ZP_08003847.1| methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317398853|gb|EFV79535.1| methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 184
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGTRKGKILKAVPGSSTRPTTDKVKEAIFNII------GPYFEGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + + N+ GF + + ++ + + + + +
Sbjct: 55 LGIEALSRGADKVIFVDRDGKAIQTIH-ENIRTCGFEEKAEVYRNDADRAI---KAILKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FDY+ + PPY L+ I ++ L+ I+ E+ ++ D+ G LV+ K
Sbjct: 111 DLVFDYIFLDPPYRKQQLLKLLKLIDENDLLSVQGTILCEHGSDVELPDSVGRLVQRKHE 170
Query: 289 RFGRTHLAIYGPDWAQ 304
+G ++IY WA+
Sbjct: 171 NYGIISISIY--SWAE 184
>gi|291299626|ref|YP_003510904.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
gi|290568846|gb|ADD41811.1| methyltransferase [Stackebrandtia nassauensis DSM 44728]
Length = 188
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 16/192 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG ++L +P+G + RP + V+ A F L++AG L LDLY+G+G
Sbjct: 1 MTRIIGGSLGGRRLSTPEGDNTRPTSDRVREALFGSLEAAG----VLDGAHVLDLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + FVE + VL N+ G + ++T ++ L+
Sbjct: 57 AVGLEALSRGAASALFVESHA-ATARVLRRNIAALGVAAETDVNTAKLPAALK------- 108
Query: 228 KDGP--FDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
++ P FD + PPY D ++++ + + + +D+ +VVE P R L
Sbjct: 109 QEPPRRFDLVFADPPYALDPTDLAIVLSHLVELDWLSEDADVVVEGPARGGEPFWPEGLT 168
Query: 284 KIKDRRFGRTHL 295
+ + RR+G T L
Sbjct: 169 RDRSRRYGETIL 180
>gi|326330641|ref|ZP_08196945.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
gi|325951482|gb|EGD43518.1| RNA methyltransferase, RsmD family [Nocardioidaceae bacterium
Broad-1]
Length = 187
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG A ++LL+PKG+ RP + V+ A F ++S+ G A LR +LDLY+GTG
Sbjct: 1 MTRIIGGVAGGRRLLAPKGVRTRPTTDRVREALFSAIESSYGSLAGLR---FLDLYAGTG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA SRG V VE D + V+ N + GF + + T +
Sbjct: 58 AVGLEAWSRGAGVVTLVESDR-RTAGVIRSNAKELGFPRANVVAASVASTLVTPPAA--- 113
Query: 228 KDGPFDYMSVTPPYTAVDYEVL--MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
P+D + + PPY D V +A + K + + +VVE R+
Sbjct: 114 ---PYDLVFLDPPYPLSDDAVAEDIALLVKHGWLVPGALVVVERSARSPEPVWPDGFTDQ 170
Query: 286 KDRRFGRTHL 295
+ +++G T L
Sbjct: 171 RSKKYGETTL 180
>gi|402846680|ref|ZP_10894989.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402267372|gb|EJU16767.1| RNA methyltransferase, RsmD family [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 192
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R++ PK + RP + K F++LQ + LDL+SGTGS
Sbjct: 1 MRIIGGKYKRRRFDVPKSFNARPTTDFAKENLFNVLQYY----INFEDATALDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEM--DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+ E ISRGCS V +E + + + L+ G L V R +L+ ++
Sbjct: 57 ISAELISRGCSRVIALEQRREHALFIRSIARELKEEGRLQVLQSDVFR---YLQTSK--- 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
G FD++ PPY + L I S L+ D +VVE+P
Sbjct: 111 GGRSQFDFIFADPPYKLKEIATLPQMILSSGLLKNDGVVVVEHP 154
>gi|226321524|ref|ZP_03797050.1| putative methyltransferase [Borrelia burgdorferi Bol26]
gi|226232713|gb|EEH31466.1| putative methyltransferase [Borrelia burgdorferi Bol26]
Length = 189
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP++ +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKNGSVRPVISLVREAFFSIIFK------DIVNSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
KD +D++ + PP+ + L+ I K ++ I++ YP D+ +I
Sbjct: 115 KKDLFYDFIYLDPPFNYKNKINLLEIILKGKILNDKVSIIMHYPSNEDL--------EIN 166
Query: 287 DRRFGRTHLAIYG 299
+F +L YG
Sbjct: 167 TSKFSVYNLKRYG 179
>gi|158320475|ref|YP_001512982.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158140674|gb|ABW18986.1| putative methyltransferase [Alkaliphilus oremlandii OhILAs]
Length = 186
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR + L +P+G++ RP + VK + F+I+QS + +DL+SG+G+
Sbjct: 1 MRVISGKARGQALKAPEGLNTRPTTDRVKESIFNIIQS------RIYDSVVVDLFSGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SR S+ +F++ + ++++ NL T + + + + V + +E+ +GK
Sbjct: 55 LGIESLSRNASKAYFIDHNKNSIASIK-ENLIKTKLNNNAIVMHMEVSSAIEQ----LGK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ + + PPY+ E + QI L+ D I+VE+ ++ + L +
Sbjct: 110 ENVKAKLIFLDPPYSKEFVEPTLKQIITVELLDSDGIIIVEHKKSDNVPEYICNLYNYRT 169
Query: 288 RRFGRTHLAIY 298
+G ++ Y
Sbjct: 170 NHYGDVAVSFY 180
>gi|344924318|ref|ZP_08777779.1| N6-adenine-specific methylase [Candidatus Odyssella
thessalonicensis L13]
Length = 204
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 14/187 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R +KL P RP + ++ A F+IL L+ LD ++G+G+
Sbjct: 1 MRIVGGKNRGRKLALPDQAYTRPTTDRIREAIFNIL--CHHPEIDLQGAYVLDAFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVG 227
+G+EA+SRG + V FVE P ++N+L NL+ F + +H + + L++A +
Sbjct: 59 LGLEALSRGATNVTFVEAHPK-IANILQQNLKL--FPESDQLHLIISDIRKLKKAAR--- 112
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
D + + PPY ++++ L + ++ + D+ IV E ++TD+ C +
Sbjct: 113 ---AMDLVFLDPPYGKGLEFQALPYLVEQN-WINSDTVIVYETEVQTDIAPLLACTAVLD 168
Query: 287 DRRFGRT 293
+RR+G T
Sbjct: 169 ERRYGGT 175
>gi|260587793|ref|ZP_05853706.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|331083795|ref|ZP_08332904.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542058|gb|EEX22627.1| RNA methyltransferase, RsmD family [Blautia hansenii DSM 20583]
gi|330403220|gb|EGG82780.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
6_1_63FAA]
Length = 183
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L + G++ RP + VK F++LQ L R+LD+++G+G
Sbjct: 1 MRVIAGSAKSMPLKTIPGLETRPTTDRVKETLFNMLQP------YLCECRFLDIFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F+E + + V+ NL++T D + + + +A F+
Sbjct: 55 IGIEALSRGAQFCVFIEKNRKAAA-VIEDNLKFTKLADRADVWCKDI----FQAVAFLEN 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ PFD + + PPY + ++ + V +D+ I+VE L TD
Sbjct: 110 EEPFDCIFMDPPYNQELEKQVLEFLRDVKFVNEDTRIIVEASLETDF 156
>gi|307244230|ref|ZP_07526345.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
gi|306492380|gb|EFM64418.1| RNA methyltransferase, RsmD family [Peptostreptococcus stomatis DSM
17678]
Length = 186
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR KL +P VRP + VK + F+I+Q + + LDL++G+G+
Sbjct: 1 MRVISGSARGLKLNTPSDDRVRPTTDRVKESMFNIIQD------RVYDSQVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+ F + + ++ N+E +D S + + L E +
Sbjct: 55 LGIEALSRGASQAVFCD-NSLDSIKIIRSNIEKARVVDRSQLVNGDFKKCLRDMET---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + V PPY +E ++ I ++ KD ++VE+ T + G V K++
Sbjct: 111 KQKFDLIFVDPPYYKGLFEEVLETIRTREILKKDGIVIVEHDANTPIEPLEGLEV-FKEK 169
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 170 KYGITMLTFY 179
>gi|423615738|ref|ZP_17591572.1| RsmD family RNA methyltransferase [Bacillus cereus VD115]
gi|401260275|gb|EJR66448.1| RsmD family RNA methyltransferase [Bacillus cereus VD115]
Length = 188
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIEKAIFVDRDSKAIK-VIHQNLESCRVHEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK++
Sbjct: 110 REMSFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGNLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|315658560|ref|ZP_07911432.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496889|gb|EFU85212.1| RsmD family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 190
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L + G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHNVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V FV+ + + V+ NL+ + + ++ + L+ + +
Sbjct: 60 LGIEGLSRGMDKVIFVDQNFKAIK-VIQANLQQLDLTEQAEVYKNNADRALKALNK---R 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D FDY+ + PPY + + QI L+ + I+ E+ + D+
Sbjct: 116 DIQFDYIFLDPPYNKGLIDKALIQIETFNLLKESGIIICEFSHQEDI 162
>gi|183601831|ref|ZP_02963200.1| hypothetical protein BIFLAC_06116 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219682746|ref|YP_002469129.1| DNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190322|ref|YP_002967716.1| hypothetical protein Balac_0263 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241195728|ref|YP_002969283.1| hypothetical protein Balat_0263 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|384190551|ref|YP_005576299.1| Methyltransferase [Bifidobacterium animalis subsp. lactis BB-12]
gi|384191692|ref|YP_005577439.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|384193322|ref|YP_005579068.1| RNA methyltransferase, RsmD family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384194878|ref|YP_005580623.1| hypothetical protein BalV_0256 [Bifidobacterium animalis subsp.
lactis V9]
gi|387820185|ref|YP_006300228.1| ribosomal RNA small subunit methyltransferase D [Bifidobacterium
animalis subsp. lactis B420]
gi|387821846|ref|YP_006301795.1| ribosomal RNA small subunit methyltransferase D [Bifidobacterium
animalis subsp. lactis Bi-07]
gi|423678844|ref|ZP_17653720.1| hypothetical protein FEM_09597 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|183218716|gb|EDT89358.1| hypothetical protein BIFLAC_06116 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620396|gb|ACL28553.1| DNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|240248714|gb|ACS45654.1| hypothetical protein Balac_0263 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250282|gb|ACS47221.1| hypothetical protein Balat_0263 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178043|gb|ADC85289.1| Methyltransferase [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793309|gb|ADG32844.1| hypothetical protein BalV_0256 [Bifidobacterium animalis subsp.
lactis V9]
gi|340364429|gb|AEK29720.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|345282181|gb|AEN76035.1| RNA methyltransferase, RsmD family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366042033|gb|EHN18514.1| hypothetical protein FEM_09597 [Bifidobacterium animalis subsp.
lactis BS 01]
gi|386652886|gb|AFJ16016.1| Ribosomal RNA small subunit methyltransferase D [Bifidobacterium
animalis subsp. lactis B420]
gi|386654454|gb|AFJ17583.1| Ribosomal RNA small subunit methyltransferase D [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 191
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 18/198 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +P+ + RP + K A F L S G L R LDL+ GTG+
Sbjct: 1 MRVITGRFKGVPLTTPRS-ETRPTTDRTKEAMFSRLDSTG----ILSGARVLDLFGGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMD---PWVVSNVLIP---NLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG +E+ VE ++++ L N W ++ +H + E + +A
Sbjct: 56 LGIEALSRGANELVVVEASGPAAKLIAHTLTALRHNPAWEESMNARIVH-AKAERYAAKA 114
Query: 223 EQFVGKDGPFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ VG+ PFD + + PPY + D E L+ ++ LV +D IV+E +RT+ +
Sbjct: 115 K--VGE--PFDVVLIDPPYAFSTADCERLLGDLTARGLVARDGMIVLERSVRTERPEAPV 170
Query: 281 CLVKIKDRRFGRTHLAIY 298
R +G T + Y
Sbjct: 171 GWQITDARDYGETAVYTY 188
>gi|15888033|ref|NP_353714.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|15155651|gb|AAK86499.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 185
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ PFD + PPY E A + + ++E R D+ T + K+
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFAAAHAGGWLTSGALAILEE--RGDVTVTVEPVFKLL 168
Query: 287 DRR-FGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|347549448|ref|YP_004855776.1| hypothetical protein LIV_2032 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982519|emb|CBW86517.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 185
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFADRAEVY--RNEA--ERALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ Q+ K ALV ++S I+ E+ M DT G VKIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENSRIICEHDKEAVMPDTVGSFVKIKA 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|222085016|ref|YP_002543545.1| methylase [Agrobacterium radiobacter K84]
gi|398381192|ref|ZP_10539302.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
gi|221722464|gb|ACM25620.1| methylase protein [Agrobacterium radiobacter K84]
gi|397719497|gb|EJK80064.1| RNA methyltransferase, RsmD family [Rhizobium sp. AP16]
Length = 188
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P +L R +D+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAVPKSNDIRPTADRTRESLFNILTHA--YPEALDGTRMMDIFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA SRGC V FVE S+V L W +D +H R A V
Sbjct: 59 VGLEAASRGCRHVLFVE------SSVEGRGLLWEN-IDALGLHG-RTRMMRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD++ PPY
Sbjct: 111 GNLEPFDFLFADPPY 125
>gi|337287802|ref|YP_004627274.1| methyltransferase [Thermodesulfobacterium sp. OPB45]
gi|334901540|gb|AEH22346.1| methyltransferase [Thermodesulfobacterium geofontis OPF15]
Length = 185
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 109 LQVLGGKARRKKLLSP-KGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+Q+ GG + +KL+ P K +D +RP+ ++ A FDIL +L + LDL++GT
Sbjct: 1 MQITGGFLKGRKLVCPSKDLDFIRPLRTRIRKALFDILGQ------NLSDLKVLDLFAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQF 225
G++GIEAISRG S FV+ P +S ++ NLE LD + + + + L+ +++F
Sbjct: 55 GALGIEAISRGASFAVFVDNSPISIS-IIKKNLERFNLLDKAQVFKLDLPKGLKILSKKF 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISK--SALVGKDSFIVVEYPLRTDMLDTCGCLV 283
FD + +TPPY + + + I L+ K + I+VE + +
Sbjct: 114 ---QNFFDLVFITPPY---EKGLALKTIKNFPENLLKKQALIIVEERTGVFLPEKINNFN 167
Query: 284 KIKDRRFGRTHLAIY 298
++ R +G T L IY
Sbjct: 168 LLQKRSYGETTLHIY 182
>gi|227872674|ref|ZP_03991004.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
gi|227841488|gb|EEJ51788.1| N6-adenine-specific methyltransferase [Oribacterium sinus F0268]
Length = 194
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L P+G D RP + +K F+ILQ L LDL++G+G+
Sbjct: 8 MRVIAGSARRLLLSVPEGKDTRPTTDRIKETLFNILQF------DLVDQDVLDLFAGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F + ++ + N+ F + + ++ + L E GK
Sbjct: 62 LGIEALSRGAKRAVFCDSGKKALA-CIEQNIARCHFQEQALVYGGDFHSALRSLE---GK 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271
D F + + PPY + + +++KS++VGKD+ VVE L
Sbjct: 118 DYHFGIVFLDPPYGEDLAKEALRRLAKSSMVGKDTVFVVETAL 160
>gi|417915994|ref|ZP_12559587.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
SK95]
gi|342831617|gb|EGU65931.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
SK95]
Length = 179
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYRGRPLKTLEGKTTRPTSDKVRGAIFNMMGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLIFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|408670833|ref|YP_006870904.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
gi|407240655|gb|AFT83538.1| hypothetical protein BgCN_0207 [Borrelia garinii NMJW1]
Length = 178
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPKTGVVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTGI 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 MSVEALSRGASLAHLVECNKK-AKITLVKNFSF-----VEEFY----KFFFQRAEDFLGK 104
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ ISK ++ I++ P D+
Sbjct: 105 KDLFYDFIYLDPPFNYKNKINLLKIISKGKILNDKVNIIMHCPFGEDL 152
>gi|229086494|ref|ZP_04218666.1| Methyltransferase [Bacillus cereus Rock3-44]
gi|228696811|gb|EEL49624.1| Methyltransferase [Bacillus cereus Rock3-44]
Length = 188
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFEGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG + FV+ D V V+ NLE D + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKAIFVDRDNKAVK-VIHQNLESCRIQDQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ KD I+ E+ + + G LVK++
Sbjct: 110 RELSFDLILLDPPYKDQKIISLISVMDQHGLLNKDGLIMAEHGNEVVLPEEIGELVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|336113675|ref|YP_004568442.1| methyltransferase [Bacillus coagulans 2-6]
gi|335367105|gb|AEH53056.1| methyltransferase [Bacillus coagulans 2-6]
Length = 198
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + V NL GF S ++ RA + + K
Sbjct: 55 LGIEALSRGMEKVIFVDKDIQALQTVQ-ANLAKCGFEGRSEVY----RNDAGRALKVLAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ IS + L+ ++ + V E+ + + G L K
Sbjct: 110 RGLAFDAVFLDPPYKKQKLTAMLEFISANGLLRENGYAVCEHDAGLALPEKAGNLHTYKT 169
Query: 288 RRFGRTHLAIY 298
++G T + IY
Sbjct: 170 AQYGITGITIY 180
>gi|335035519|ref|ZP_08528860.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
gi|333793286|gb|EGL64642.1| hypothetical protein AGRO_2852 [Agrobacterium sp. ATCC 31749]
Length = 185
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ PFD + PPY E A + + ++E R D+ T + K+
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFAAAHGGGWLTSGALAILEE--RGDVTVTVEPVFKLL 168
Query: 287 DRR-FGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|218290491|ref|ZP_03494611.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
gi|218239512|gb|EED06707.1| methyltransferase [Alicyclobacillus acidocaldarius LAA1]
Length = 184
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGVSLESPRGGAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FV+ DP + ++ NL+ G +S V V + +F
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVG---AASQAEVWVLDWARALRRFEAS 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ Y+ V PPY + ++ + S + G +V E P D+ D G V K R
Sbjct: 110 EEVAAYVFVDPPYQEQLWIPVLRALPASRVSGA---VVCEAPASLDLPDEVGEFVLQKAR 166
Query: 289 RFGRTHLAIY 298
++G + IY
Sbjct: 167 KYGDIAVRIY 176
>gi|410667355|ref|YP_006919726.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
gi|409105102|gb|AFV11227.1| rRNA methyltransferase RsmD [Thermacetogenium phaeum DSM 12270]
Length = 200
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+V+GG A+ K+L + K +RP + ++ A F+IL P S +LDL++G+GS
Sbjct: 4 LRVIGGIAKGKRLKTRKVKHLRPATDYLREALFNILMYQ--VPGSF----FLDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FVE DP + ++ NLE TGF D + + T V L ++ K
Sbjct: 58 IGIEALSRGAERVCFVEKDPG-NARLIRENLEITGFTDQAEVFTGDVFHILPLLKR---K 113
Query: 229 DGPFDYMSVTPPY 241
F + + PP+
Sbjct: 114 GCRFHIVFIDPPF 126
>gi|325294970|ref|YP_004281484.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065418|gb|ADY73425.1| methyltransferase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 193
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++++GGK + +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRIIGGKYKGRRIKSLPKRSDTKLLRPTTERVKESVFSILNN------YLEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GTG+VGIEAISRG +V FVE D N++ NL G + + + ++ ++
Sbjct: 55 GTGNVGIEAISRGAKKVVFVENDKR-FCNLIEENLRKLGV--ERGKYEIICDDYVNALKK 111
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
+ FD++ PPY Y ++ + L+ +D +++E P
Sbjct: 112 LAKRGEKFDFIYADPPYEKGFYTRIVNMVKNFDLLDEDGLLILEEP 157
>gi|303229896|ref|ZP_07316672.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
gi|302515452|gb|EFL57418.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-134-V-Col7a]
Length = 183
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IYGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FDY+ PPY E + ++ AL D +V+EY
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDAL-ADDGVLVLEY 148
>gi|251780095|ref|ZP_04823015.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084410|gb|EES50300.1| RNA methyltransferase, RsmD family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 185
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR +KL+ P M+ RP ++ VK A F ++Q G P S +D+++GTGS
Sbjct: 1 MRIISGKARGRKLIPPASMETRPTLDRVKEAMFSMIQ--GYIPDS----NVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLER 221
+G+EA SRG EV+ + E P + N I L++ F L++ S +R
Sbjct: 55 LGLEAASRGAKEVYLIDKSSETFPLLKEN--IKKLKFDDFCFGLNMDSYEALR------- 105
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
+ + F+ + + PPY + I ++ ++ ++ I+ + ++ D
Sbjct: 106 --KLSNQGKVFELIFIDPPYCKEMIPEAIKIIKENNILSENGIIITKIDTIEEIYDGYED 163
Query: 282 LVKIKDRRFGRTHLAIYG 299
+ K R++G T + YG
Sbjct: 164 IFLRKSRKYGNTTVCFYG 181
>gi|347750629|ref|YP_004858194.1| methyltransferase [Bacillus coagulans 36D1]
gi|347583147|gb|AEO99413.1| methyltransferase [Bacillus coagulans 36D1]
Length = 198
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+++ G LDLY+G+G
Sbjct: 1 MRVISGSQKGTVLKAVPGMGTRPTTDKVKEAIFNMIGP------YFEKGLGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + + V NLE FL S ++ RA + + K
Sbjct: 55 LGIEALSRGMEKVIFVDKEIQALQTVR-ANLEKCDFLGRSEVY----RNDAGRALKVLAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ IS + L+ ++ + V E+ + + G L K
Sbjct: 110 RGLAFDTVFLDPPYKKQKLIAMLEFISANGLLLENGYAVCEHDAGLTLPEKAGNLFTYKT 169
Query: 288 RRFGRTHLAIY 298
++G T + IY
Sbjct: 170 AQYGITGITIY 180
>gi|325292074|ref|YP_004277938.1| methyltransferase [Agrobacterium sp. H13-3]
gi|325059927|gb|ADY63618.1| methyltransferase [Agrobacterium sp. H13-3]
Length = 185
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK-I 285
+ PFD + PPY E A + + ++E R D++ + K +
Sbjct: 111 NNIEPFDLLFADPPYGQGHGEKAFAAAHAGGWLAPGALAILEE--RGDVVVNVEPVFKPL 168
Query: 286 KDRRFGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|51892576|ref|YP_075267.1| RNA methylase [Symbiobacterium thermophilum IAM 14863]
gi|51856265|dbj|BAD40423.1| putative RNA methylase [Symbiobacterium thermophilum IAM 14863]
Length = 192
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + K VRP + VK + F+I+ S + +LDL++G+G+
Sbjct: 1 MRVITGSAKGRPLKTVKSRAVRPTSDRVKESLFNIIGS------RVVDADFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG FVE+ + V+ NL TG + + L +
Sbjct: 55 VGIEALSRGARACVFVELQTAHL-KVVADNLRTTGLAGRAELIRRDARAALV---DLAHR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD++ V PPY ++A I ++ +D +++ E+ + + G L + ++
Sbjct: 111 GRRFDFIFVDPPYGQDLVPAVLALIDGHGVLAEDGWVICEHHAKDPVPAAAGGLYRFREV 170
Query: 289 RFGRTHLAIYGPD 301
FG T L+IY D
Sbjct: 171 LFGETMLSIYRAD 183
>gi|403234918|ref|ZP_10913504.1| methyltransferase [Bacillus sp. 10403023]
Length = 189
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + GM RP + VK A F+I+ G LDL+ G+G
Sbjct: 1 MRVVSGSKKGLHLKAVPGMSTRPTTDKVKEAIFNII------GPYFDGGNGLDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++V FV+ D + + NLE D + ++ L + V +
Sbjct: 55 LGIEALSRGINKVIFVDRDQKAIQTIK-GNLEICRLEDQAEVYR---NDALRALKAIVKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D F + + PPY ++ +I + L+ KD FIV E+ + T G L ++
Sbjct: 111 DIQFQLVFLDPPYKQQKLTEIIEKIGEHQLLTKDGFIVAEHDSAVLLDKTIGDLTMVRHE 170
Query: 289 RFGRTHLAIY 298
+G ++I+
Sbjct: 171 VYGIIGVSIF 180
>gi|423395769|ref|ZP_17372970.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-1]
gi|423406645|ref|ZP_17383794.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-3]
gi|401653511|gb|EJS71055.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-1]
gi|401659935|gb|EJS77418.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-3]
Length = 188
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGDLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|238916967|ref|YP_002930484.1| hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
gi|238872327|gb|ACR72037.1| Hypothetical protein EUBELI_01036 [Eubacterium eligens ATCC 27750]
Length = 186
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 107/194 (55%), Gaps = 19/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ G AR L + +G + RP + +K F++LQS GC R+LDLY+G+G
Sbjct: 1 MRVIAGTARSLPLKAAEGDNTRPTTDRIKETLFNMLQSDIAGC-------RFLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E VE ++ V+ NL +T LD ++ + + L + G
Sbjct: 54 AIGIEALSRGAKEAVLVENARAALA-VIKDNLAFTK-LDSKAV--IMEQDVLSAINRLAG 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGC-LV 283
K G FD + + PPY +Y+VL A +S S ++ K + I++E L D ++ CG +
Sbjct: 110 K-GVFDIIFMDPPYGKDYEYDVLNA-LSHSDIIDKYTIIIIEEALHVPLDYINECGFETI 167
Query: 284 KIKDRRFGRTHLAI 297
K+K+ + + H+ I
Sbjct: 168 KVKNYKTNK-HIFI 180
>gi|347531756|ref|YP_004838519.1| adenine-specific DNA-methyltransferase [Roseburia hominis A2-183]
gi|345501904|gb|AEN96587.1| site-specific DNA-methyltransferase (adenine-specific) [Roseburia
hominis A2-183]
Length = 183
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR L +P+GMD RP + +K F+I+Q P + +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKAPEGMDTRPTTDRIKETLFNIIQDE--VPGAY----FLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG FV+ + + + N+ +T F + ++ V + L E GK
Sbjct: 55 MGLEAVSRGARYAVFVD-NGKKPAACIEENIRFTKFEHQTKLYPTEVLSALRAME---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCG 280
FD + + PPY + ++ ++ S+L+ +D+ ++VE L TD LD G
Sbjct: 111 -YQFDLIFMDPPYRKGMEQEVLRYLAGSSLLKEDTVLIVEAALDTDFSYLDEYG 163
>gi|332296365|ref|YP_004438288.1| hypothetical protein Thena_1545 [Thermodesulfobium narugense DSM
14796]
gi|332179468|gb|AEE15157.1| Protein of unknown function methylase putative [Thermodesulfobium
narugense DSM 14796]
Length = 187
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 13/191 (6%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++GG+ + + L+SPK +VRP+ V+ + DI+ S + LDL++G GSV
Sbjct: 5 IVGGEFKNRSLVSPKTNEVRPLSSRVRKSLMDIVGSR------VIECTLLDLFAGIGSVS 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
IE +SRG V VE +P + S L NLE L+ +I VE FL D
Sbjct: 59 IEFLSRGAKSVISVEKNPKIAS-FLKKNLENFNLLNRCTILNYSVEKFLLNCH-----DI 112
Query: 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRF 290
FD + + PP+ + D E L+ S K S ++ + + + G + R +
Sbjct: 113 KFDIIYMDPPF-SYDLEKLLQIFSNFEGYHKKSMFILHHFFKYKPKEKLGYWKMLDSRTY 171
Query: 291 GRTHLAIYGPD 301
+ Y P+
Sbjct: 172 SSNSITFYAPE 182
>gi|374986252|ref|YP_004961747.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
gi|297156904|gb|ADI06616.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
Length = 195
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SLR R LDLY G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLRGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + +V ++ E RAEQ +
Sbjct: 58 AVGLEALSRGAEHVLLVESDARAARTIRA---------NVRALGLPGAELRTGRAEQAIA 108
Query: 228 ----KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
+ GP+D + + PPY D E+ ++ ++ + + D+ VE R
Sbjct: 109 GPAPESGPYDVVFLDPPYAVADEELREILLTLAGNRWLAPDALATVERSTRGGDFGWPAG 168
Query: 282 LVKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 169 FEGLRARRYGEGTL 182
>gi|229174596|ref|ZP_04302126.1| Methyltransferase [Bacillus cereus MM3]
gi|423401227|ref|ZP_17378400.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-2]
gi|423457885|ref|ZP_17434682.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X2-1]
gi|423478069|ref|ZP_17454784.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-1]
gi|228608901|gb|EEK66193.1| Methyltransferase [Bacillus cereus MM3]
gi|401148269|gb|EJQ55762.1| RsmD family RNA methyltransferase [Bacillus cereus BAG5X2-1]
gi|401654217|gb|EJS71760.1| RsmD family RNA methyltransferase [Bacillus cereus BAG2X1-2]
gi|402428231|gb|EJV60328.1| RsmD family RNA methyltransferase [Bacillus cereus BAG6X1-1]
Length = 188
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK++
Sbjct: 110 REISFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPDSIGSLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|167769118|ref|ZP_02441171.1| hypothetical protein ANACOL_00441 [Anaerotruncus colihominis DSM
17241]
gi|167668758|gb|EDS12888.1| RNA methyltransferase, RsmD family [Anaerotruncus colihominis DSM
17241]
Length = 183
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 21/202 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L +P+G RP ++ K A F IL L LDL++G+G
Sbjct: 1 MRVITGTARGTRLEAPEGQQTRPTSDMAKEAVFSILHF------ELAGAAVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ V+ NL + + + +FL G
Sbjct: 55 LGIEALSRGAKSCVFVD-HSRAAQEVIRRNLAAAKLTPLGRVAAMDASSFL------AGC 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY E +A + +AL+ IV E R + G K
Sbjct: 108 RDRFDIALLDPPYDGGQLETALAGV--AALMNDGGVIVCETDRRAEPPAMVGTFCIQKAY 165
Query: 289 RFGRTHLAIYGPDWAQKKRKSE 310
R+GRT + Y +KR+ E
Sbjct: 166 RYGRTKITTY------RKRQEE 181
>gi|430002365|emb|CCF18146.1| Putative methyltransferase [Rhizobium sp.]
Length = 186
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP ++ + + F+I+ P +L+ R +DL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNDIRPTVDRTRESLFNIIGHV--YPEALQQTRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC + FVE ++V L W ++ R+ L R +G
Sbjct: 59 VGLEALSRGCRQALFVE------NSVEGRGLLWENIDHLALHGRARI---LRRDATKLGP 109
Query: 229 DG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK- 284
+G PF+ + PPY E M + + ++E R D+ + + +
Sbjct: 110 NGTIEPFNLLFADPPYGRSFGEAAMLAAHSGGWLAPGALAILEE--RADVAPSVDPVFRP 167
Query: 285 IKDRRFGRTHLAIY 298
++ R FG T + +
Sbjct: 168 LEQRLFGDTRMHFF 181
>gi|378825079|ref|YP_005187811.1| methyltransferase [Sinorhizobium fredii HH103]
gi|365178131|emb|CCE94986.1| methyltransferase [Sinorhizobium fredii HH103]
Length = 185
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL + P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILSHS--YPEALDGARMLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSSIHTVRVETFLERAEQF-- 225
VG+EA+SRGC + FVE V LI N+E G R + F A
Sbjct: 59 VGLEALSRGCRQALFVEQG--VEGRGLIRVNIEALGL-------QARAKIFRRDAVDLGT 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVK 284
VG PF + PPY E + + + + +V+E R D+ G
Sbjct: 110 VGTMEPFHLVFADPPYGEGLGERALESAAAGGWLVPGALVVLEE--RADIRPQLSGAFEP 167
Query: 285 IKDRRFGRTHLAIY 298
+ R FG T + Y
Sbjct: 168 LDVRAFGDTQMHFY 181
>gi|229918535|ref|YP_002887181.1| methyltransferase [Exiguobacterium sp. AT1b]
gi|229469964|gb|ACQ71736.1| methyltransferase [Exiguobacterium sp. AT1b]
Length = 187
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +L + G RP + VK + F+I+ G+ LDLY+G+G
Sbjct: 1 MRVISGERKGTRLKAVPGTATRPTTDKVKESLFNII------GPYFSGGKALDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ P V + NL T + ++ + L EQ +
Sbjct: 55 LGIEALSRGCDEAIFVDRQPKAVQTIQ-ENLRATHYEVKGKVYRQDAKAVL---EQLKVQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY A ++ + I +S L+ +V E+ + + G +IK++
Sbjct: 111 QEQFKLIFMDPPYHAEEHVTFLQMIDESNLLIDIGVVVCEHGSDVTLPERVGRFERIKEQ 170
Query: 289 RF 290
R+
Sbjct: 171 RY 172
>gi|452994757|emb|CCQ93642.1| putative methyltransferase [Clostridium ultunense Esp]
Length = 183
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + +L PKG D RP + +K + F+IL+ + LDL++G+GS
Sbjct: 1 MRVIAGDKKGFRLKGPKGKDTRPTEDRIKESLFNILRYID------KDSMVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG FV+ + + NLE TG D + + ++ + ++ K
Sbjct: 55 IGIEFLSRGAKRAFFVDR-SYESIRCIKENLEHTGLKDRAEV--IKSDA-IKTVSMLKSK 110
Query: 229 DGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
F+Y+ + PPY D V ++ +I ++++ + I++E+ ++ D L+K+
Sbjct: 111 KLKFNYIFIDPPY-GYDLGVEVLEKIWGNSILEEKGIIILEHEKGLNLEDNIYGLIKMDS 169
Query: 288 RRFGRTHLAIYG 299
R +G L+ Y
Sbjct: 170 RSYGHKSLSFYA 181
>gi|378972565|ref|YP_005221169.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378973631|ref|YP_005222237.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378974695|ref|YP_005223303.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum DAL-1]
gi|378981540|ref|YP_005229845.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374676888|gb|AEZ57181.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374677957|gb|AEZ58249.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679026|gb|AEZ59317.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|374680093|gb|AEZ60383.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum DAL-1]
Length = 181
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 17/195 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + L P G +RP M+ ++ + F IL GC +LDL++G+G
Sbjct: 1 MRITGGMLKNHVLRCPDG-PIRPAMDRMRESLFAILGDMRGCS-------FLDLFAGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA SRG V FVE + S VL+ N++ L + VE ++ RA
Sbjct: 53 CGLEAYSRGAYPVVFVERNVRSFS-VLLQNVQVA--LCRLECRCMAVERYIARARTL--- 106
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F ++ + PP+ + L+ ++S+++L + S ++V P + D LV+ R
Sbjct: 107 ---FHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQR 163
Query: 289 RFGRTHLAIYGPDWA 303
+GR+ + Y D A
Sbjct: 164 VYGRSVVDFYRRDKA 178
>gi|227893365|ref|ZP_04011170.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
gi|227864780|gb|EEJ72201.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
ultunensis DSM 16047]
Length = 183
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 19/197 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VK + F+ L G LDLY+G+G+
Sbjct: 1 MRIISGKYAKRNLFTLKSNRTRPTSDKVKESLFNSLGQF------FHGGNVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GFLDVSSIH-TVRVETFLERAEQ 224
+GIEA+SRG + V+++ S ++ N+ T DV ++ +V ++ F E E+
Sbjct: 55 LGIEAVSRGYDKASLVDINHAACS-IIKKNVALTKEENRFDVYNMRSSVALKLFAENGER 113
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY M Q++K L+ +++ +V E T++ G +
Sbjct: 114 -------FDLVFLDPPYAKEKIAKDMMQMNKLDLLNENAIVVAETDDHTELGKITGFSL- 165
Query: 285 IKDRRFGRTHLAIYGPD 301
IKD G+T + IY D
Sbjct: 166 IKDHHLGKTIVRIYRKD 182
>gi|163840525|ref|YP_001624930.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162954001|gb|ABY23516.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
Length = 194
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 14/194 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G A + L+S G RP + VK A F L++ G L+ + LDLY+G+G++
Sbjct: 3 RIIAGAAGGQTLVSVPGTGTRPTTDRVKEALFSRLEAMG----VLKESKVLDLYAGSGAL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS---IHTVRVETFLERAEQFV 226
G+E+ SRG ++V VE+D + V N + + + ++ +VE FL+RA+
Sbjct: 59 GLESASRGAAKVDLVELDARAAA-VCQRNADLVNSVTAAGTVRVNRAKVEQFLQRAK--- 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
GP+D + + PPY + E+ ++ + + + + +VVE R+ +
Sbjct: 115 ---GPWDLVFLDPPYPLTEDELAEVLLALGSALSEGAVVVVERATRSPEPLWPATMELFS 171
Query: 287 DRRFGRTHLAIYGP 300
+R +G T L P
Sbjct: 172 ERSYGETRLWFAEP 185
>gi|121533820|ref|ZP_01665647.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
gi|121307811|gb|EAX48726.1| putative methyltransferase [Thermosinus carboxydivorans Nor1]
Length = 163
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 10/170 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+ DVRP + VK + F+IL S + LDL++GTG+
Sbjct: 1 MRIITGSAKGTKLKTPRSFDVRPTADRVKESIFNILGSV------VLDADVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG FV+ P ++ ++ N+ T D + ++ +++RA Q +G+
Sbjct: 55 LGLEAVSRGAKSAIFVDNSPASIA-LIKENIIRTKSADRTHVYKSDALRYIDRAAQ-LGQ 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT 278
+ FD + PPY ++ ++ L+ + +V+E+ R + D
Sbjct: 113 N--FDLIFCDPPYNKGLATAVVEKLDSRLLLRESGLLVIEHSRREAINDN 160
>gi|385799672|ref|YP_005836076.1| methyltransferase [Halanaerobium praevalens DSM 2228]
gi|309389036|gb|ADO76916.1| methyltransferase [Halanaerobium praevalens DSM 2228]
Length = 179
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA KL S KG DVRP ++ VK + F+I+ A P LDL+SG G+
Sbjct: 1 MRIIAGKAGGLKLKSLKGRDVRPTLDRVKESMFNII--AFYLP----EAEVLDLFSGFGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR + FVE+ + N++ NL L+ + ++ V ++L+ + +
Sbjct: 55 LGIEALSRRAKKADFVELKQAHL-NIIEENLNKAKLLEKADLYQQDVYSYLKNSNK---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY + I K+ L+ KD +++ ++ + L IK++
Sbjct: 110 --KYDLIFMDPPYQKKMTAEAIELIIKNNLL-KDKGLIISEKSASEKTNEFAELDIIKNK 166
Query: 289 RFGRTHLAIY 298
+G + L IY
Sbjct: 167 IYGNSLLTIY 176
>gi|254827059|ref|ZP_05231746.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|255026465|ref|ZP_05298451.1| hypothetical protein LmonocytFSL_09235 [Listeria monocytogenes FSL
J2-003]
gi|284802498|ref|YP_003414363.1| hypothetical protein LM5578_2254 [Listeria monocytogenes 08-5578]
gi|284995640|ref|YP_003417408.1| hypothetical protein LM5923_2205 [Listeria monocytogenes 08-5923]
gi|386044361|ref|YP_005963166.1| RsmD family RNA methyltransferase [Listeria monocytogenes 10403S]
gi|404411353|ref|YP_006696941.1| methyltransferase [Listeria monocytogenes SLCC5850]
gi|404414130|ref|YP_006699717.1| methyltransferase [Listeria monocytogenes SLCC7179]
gi|258599441|gb|EEW12766.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284058060|gb|ADB69001.1| hypothetical protein LM5578_2254 [Listeria monocytogenes 08-5578]
gi|284061107|gb|ADB72046.1| hypothetical protein LM5923_2205 [Listeria monocytogenes 08-5923]
gi|345537595|gb|AEO07035.1| RsmD family RNA methyltransferase [Listeria monocytogenes 10403S]
gi|404231179|emb|CBY52583.1| putative methyltransferase [Listeria monocytogenes SLCC5850]
gi|404239829|emb|CBY61230.1| putative methyltransferase [Listeria monocytogenes SLCC7179]
Length = 185
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAALAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLIFLDPPYKKQQLEKLLGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|308068607|ref|YP_003870212.1| N6-adenine-specific methylase [Paenibacillus polymyxa E681]
gi|305857886|gb|ADM69674.1| N6-adenine-specific methylase [Paenibacillus polymyxa E681]
Length = 213
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + G RP + VK A F ++ G LDL++G+G
Sbjct: 1 MRVVSGSAKGRPLKAVPGTGTRPTTDKVKEALFSMIGP------YFDGGVALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQF 225
+GIEA+SRG + F++M+ + +V+ NL TG + E F RA +
Sbjct: 55 LGIEALSRGMDKAVFIDMESKSI-DVIKENLRKTGL-------EGQAEVFRNDAGRALKV 106
Query: 226 VGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K G FD + + PPY + LM+++++ L+ D+ IV+EY + ++ G +
Sbjct: 107 LAKRGALFDAVFLDPPYRLKHGDELMSRMAELNLLRSDAIIVLEYESGHEYPESFGPFEQ 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T L+IY
Sbjct: 167 VRKAVYGETALSIY 180
>gi|169830816|ref|YP_001716798.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637660|gb|ACA59166.1| putative methyltransferase [Candidatus Desulforudis audaxviator
MP104C]
Length = 187
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L + G+ VRP V+ A F+IL A P S R+LDLY+GTG+
Sbjct: 1 MRIIAGNLKGRRLQAGSGLVVRPTTGRVREALFNIL--AQRVPES----RFLDLYAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG S FVE D V + +L L TG + + + +G
Sbjct: 55 VGLEALSRGASLAVFVENDRRVAA-ILKRRLAETGLSGRGQVRLGKATAVI----TALGV 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G FD + + PPY+ ++++ +S +V +++ E R + G L +
Sbjct: 110 EGRVFDLVFMDPPYSGDLVTKTLSRLFESGVVDPAGWVIAESSFRRPPSEKVGGLYVWRR 169
Query: 288 RRFGRTHLAIY 298
+R+G + L+ Y
Sbjct: 170 KRYGESLLSFY 180
>gi|89099578|ref|ZP_01172453.1| Methyltransferase [Bacillus sp. NRRL B-14911]
gi|89085731|gb|EAR64857.1| Methyltransferase [Bacillus sp. NRRL B-14911]
Length = 190
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ G+ + L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MMRVVSGECKGISLKAVPGNTTRPTTDKVKEAIFNMI------GPYFDGGTGLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG V FV+ + + V NLE G + + ++ E L + V
Sbjct: 55 GLGIEALSRGLVSVIFVDREGKAIKTVH-ENLEACGLEEKAEVYRNDSERAL---KAIVK 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FDY+ + PPY LM I + +L+ ++ IV E+ ++ G VK K
Sbjct: 111 REISFDYIFLDPPYKKQQLLKLMELIGRHSLLKEEGVIVCEHASDIELPGETGNFVKTKS 170
Query: 288 RRFGRTHLAIY 298
+G ++I+
Sbjct: 171 ETYGIIAVSIF 181
>gi|386347096|ref|YP_006045345.1| methyltransferase [Spirochaeta thermophila DSM 6578]
gi|339412063|gb|AEJ61628.1| methyltransferase [Spirochaeta thermophila DSM 6578]
Length = 180
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + + +L P G+ +RP M ++ A F L + G +LDL++G+G
Sbjct: 4 MRITGGIHKGRTVLCPPGI-IRPAMARMREALFSSLGNMEG-------RSFLDLFAGSGI 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA SRG S V VE D VL NL G + +E AE ++
Sbjct: 56 MAIEAASRGASPVVCVEKD-RRKRPVLERNLRELG---------IDGRILIEPAEHYIRH 105
Query: 229 D-GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
PFD + + PP+ L+ +S SAL+ + + I++ +P + + T G L + K+
Sbjct: 106 AVSPFDVIYLDPPFAYPHKGRLLELVSSSALLHETTVILIHHPSKDPLPGTPGRLERFKE 165
Query: 288 RRFGRTHLAIY 298
+ FG+++++ Y
Sbjct: 166 KHFGQSYVSFY 176
>gi|354584976|ref|ZP_09003867.1| methyltransferase [Paenibacillus lactis 154]
gi|353191093|gb|EHB56602.1| methyltransferase [Paenibacillus lactis 154]
Length = 314
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
+ +R ++V+ G A+ + L S GM RP + VK A F ++ G LDL
Sbjct: 106 KRVNRAVRVVSGSAKGRPLKSVPGMSTRPTTDKVKEAIFSMI------GPYFDGGTVLDL 159
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
++GTG +GIEA+SRG F++++ + + NL+ + + ++ L+
Sbjct: 160 FAGTGGLGIEALSRGMDRAVFIDVEQRSIETIK-DNLKAVRLQEAAEVYRNDAARALKVL 218
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
E+ + FD + + PPY + + LM +++ L+ + + IV+EY + ++ G
Sbjct: 219 EK---RGAAFDLVFLDPPYKFKNGDELMNDMAERKLLREGAVIVLEYESGYEYPESFGHF 275
Query: 283 VKIKDRRFGRTHLAIY 298
++ R+G T + IY
Sbjct: 276 HGMRTARYGETAVTIY 291
>gi|303245504|ref|ZP_07331788.1| methyltransferase [Desulfovibrio fructosovorans JJ]
gi|302493353|gb|EFL53215.1| methyltransferase [Desulfovibrio fructosovorans JJ]
Length = 202
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 16/197 (8%)
Query: 109 LQVLGGK--ARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
++V+ G+ RR K++ G+ RP V+ A F +L + ++ PG R LDL++G
Sbjct: 3 MRVIAGRFGGRRIKVVDAVGL--RPATGRVREALFSMLAAR----EAIFPGARVLDLFAG 56
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
GSVGIEA+SRG FVE +P V+ +L NL G +S VE + RA
Sbjct: 57 AGSVGIEALSRGADFCLFVEKNP-AVAKMLRENLRGLGL---ASGEAKVVEADVARALPR 112
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV--VEYPLRTDMLDTCGCLV 283
+ + PFD +++ PPY +A + S L+ D I +E R +D L
Sbjct: 113 LAET-PFDIVAIDPPYGHDLLPPTLAALVGSGLLAPDGVIAAEIEAGARLAPVDVPESLA 171
Query: 284 KIKDRRFGRTHLAIYGP 300
+ DR +G+T + ++ P
Sbjct: 172 CLTDRTYGQTRIILWTP 188
>gi|218962130|ref|YP_001741905.1| hypothetical protein CLOAM1872 [Candidatus Cloacamonas
acidaminovorans]
gi|167730787|emb|CAO81699.1| conserved hypothetical protein [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 215
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G +++ L GM RP + F +LQ GC R LDL++G+GS
Sbjct: 26 MRIITGIYKKRNLFLVPGMSTRPTSSFNREVIFSVLQDYAGC-------RVLDLFAGSGS 78
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E +SRG V FVE P + N ++ N+ G + + +V+ +L+ E
Sbjct: 79 LGLETLSRGAVWVDFVEFAPSAI-NTILQNINLLGCSENCHLWRKKVDVYLKSCE----- 132
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+D + + PPY + I + +L+ ++ I+VE+
Sbjct: 133 -NKYDIIFIDPPYDKNLINPTLKLIYEKSLLNEEGSIIVEH 172
>gi|118444370|ref|YP_878304.1| methyltransferase [Clostridium novyi NT]
gi|118134826|gb|ABK61870.1| methyltransferase, putative [Clostridium novyi NT]
Length = 185
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 22/197 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVRVETFLERA 222
+G+E++SRG E + V+ P V L N++ F L++ S + ++
Sbjct: 55 LGLESVSRGAKECYLVDRYP-VTFKRLQQNVKSLRFENECVCLNMDSYNALK-------- 105
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
F K FD + + PPY + + K L+ +D IV + ++ + +
Sbjct: 106 -NFAKKKKIFDLIFIDPPYAKEMIPPAIDIVGKERLLEEDGLIVTKIDSSEEIFEGNDDI 164
Query: 283 VKIKDRRFGRTHLAIYG 299
V I R++G T + Y
Sbjct: 165 VLINHRKYGNTTVCFYA 181
>gi|338706042|ref|YP_004672810.1| putative SAM dependent methyltransferase [Treponema
paraluiscuniculi Cuniculi A]
gi|335344103|gb|AEH40019.1| probable SAM dependent methyltransferase [Treponema
paraluiscuniculi Cuniculi A]
Length = 181
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 17/195 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + L P G +RP M+ ++ + F +L GC +LDL++G+G
Sbjct: 1 MRITGGMLKNHVLRCPDG-PIRPAMDRMRESLFAVLGDMHGCS-------FLDLFAGSGV 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+EA SRG V FVE + S VL+ N++ L + VE ++ RA
Sbjct: 53 CGLEAYSRGAYPVVFVERNVRSFS-VLLQNVQVA--LCRLECRCMAVERYIARARTL--- 106
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F ++ + PP+ + L+ ++S+++L + S ++V P + D LV+ R
Sbjct: 107 ---FHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQR 163
Query: 289 RFGRTHLAIYGPDWA 303
+GR+ + Y D A
Sbjct: 164 VYGRSVVDFYRRDKA 178
>gi|16804092|ref|NP_465577.1| hypothetical protein lmo2053 [Listeria monocytogenes EGD-e]
gi|255030256|ref|ZP_05302207.1| hypothetical protein LmonL_16306 [Listeria monocytogenes LO28]
gi|386051028|ref|YP_005969019.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386054307|ref|YP_005971865.1| RsmD family RNA methyltransferase [Listeria monocytogenes Finland
1998]
gi|404284549|ref|YP_006685446.1| methyltransferase [Listeria monocytogenes SLCC2372]
gi|405759103|ref|YP_006688379.1| methyltransferase [Listeria monocytogenes SLCC2479]
gi|16411523|emb|CAD00131.1| lmo2053 [Listeria monocytogenes EGD-e]
gi|346424874|gb|AEO26399.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|346646958|gb|AEO39583.1| RsmD family RNA methyltransferase [Listeria monocytogenes Finland
1998]
gi|404234051|emb|CBY55454.1| putative methyltransferase [Listeria monocytogenes SLCC2372]
gi|404236985|emb|CBY58387.1| putative methyltransferase [Listeria monocytogenes SLCC2479]
Length = 185
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAALAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLIFLDPPYKKQQLEKLIGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|327399183|ref|YP_004340052.1| methyltransferase [Hippea maritima DSM 10411]
gi|327181812|gb|AEA33993.1| methyltransferase [Hippea maritima DSM 10411]
Length = 177
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 28/196 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ GK + K+L K ++RP +VK + FD ++ GC +LDL++G+G
Sbjct: 1 MRIIAGKLKYKRLYFKKNQNLRPTRNIVKKSFFDTMRGLIEGCV-------FLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVG+EA+SRG V FV+ VS + F +V I + AE+F+
Sbjct: 54 SVGMEALSRGAKRVVFVDSSNDSVS---LIRKNTNNFDNVDVIKS--------DAEKFL- 101
Query: 228 KDGPF----DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
D P + V PPY A D EV + ++ K +V +++ + VE+ + + G
Sbjct: 102 -DNPLVRSAGVVYVDPPY-AFDVEVFLEKLFK--VVNRNAIVCVEHDKKRHLRGDFGLFK 157
Query: 284 KIKDRRFGRTHLAIYG 299
K + FG+ L +G
Sbjct: 158 CFKSKNFGKNTLDYFG 173
>gi|430756017|ref|YP_007209797.1| hypothetical protein A7A1_0525 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430020537|gb|AGA21143.1| Hypothetical protein YlbH [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 184
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKTLELTKHAQVYRNDAERALHAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ ++ FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQKLKALLTLIDEYQVLEENGFIVAEHDREVELPETVGDLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 TYGLTGVAIY 180
>gi|219684628|ref|ZP_03539571.1| putative methyltransferase [Borrelia garinii PBr]
gi|219671990|gb|EED29044.1| putative methyltransferase [Borrelia garinii PBr]
Length = 189
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F ++AE F+G
Sbjct: 65 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQKAEDFLG 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ ISK ++ I++ P D+
Sbjct: 115 KKDLFYDFIYLDPPFNYQNKINLLEIISKGKILNDKVNIIMHCPFGEDL 163
>gi|194336287|ref|YP_002018081.1| hypothetical protein Ppha_1191 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308764|gb|ACF43464.1| Protein of unknown function methylase putative [Pelodictyon
phaeoclathratiforme BU-1]
Length = 178
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+LGG + +K+ S + +RP VK + FD+L + LDL++G GS
Sbjct: 1 MQILGGTYKGRKIRSSSSLAIRPCSSRVKKSLFDMLTA----RMDFEGVSVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V FV+ + + L+ ++H RV+ F+G+
Sbjct: 57 LGFEALSRGAQSVCFVDQHVDALKAMKATALQL-------ALHD-RVKIVNSDVLAFLGR 108
Query: 229 D-GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
G FD + PPY+ DYE L+ ++ S L+ +D +++E+ D
Sbjct: 109 TTGQFDLLFCDPPYSWPDYERLIEKMFASTLLSQDGLVLMEHSAHLDF 156
>gi|47097651|ref|ZP_00235169.1| methyltransferase, putative [Listeria monocytogenes str. 1/2a
F6854]
gi|254912610|ref|ZP_05262622.1| hypothetical protein LMPG_01539 [Listeria monocytogenes J2818]
gi|254936937|ref|ZP_05268634.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386047706|ref|YP_005966038.1| RsmD family RNA methyltransferase [Listeria monocytogenes J0161]
gi|47013971|gb|EAL04986.1| methyltransferase, putative [Listeria monocytogenes str. 1/2a
F6854]
gi|258609539|gb|EEW22147.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590604|gb|EFF98938.1| hypothetical protein LMPG_01539 [Listeria monocytogenes J2818]
gi|345534697|gb|AEO04138.1| RsmD family RNA methyltransferase [Listeria monocytogenes J0161]
Length = 185
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|389575665|ref|ZP_10165693.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
gi|389311150|gb|EIM56083.1| RNA methyltransferase, RsmD family [Eubacterium cellulosolvens 6]
Length = 189
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R L + G D RP + +K F+++Q+ + +LDL++G+G+
Sbjct: 1 MRVIAGKCRSLPLKTLPGRDTRPTTDRIKETLFNVMQN------DIPQACFLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ V V+ NL + D + ++ + + A + +
Sbjct: 55 IGIEALSRGAQSCCFVDQSRKAVE-VIKENLAFCRLTDQAEVYQMDAVS----AVKSLAN 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
PFD + + PPY + +M + S+ + +D+ IV+E TD
Sbjct: 110 HEPFDVVFMDPPYLHDLEKEVMEALRTSSCITEDTVIVIEASRDTDF 156
>gi|46908288|ref|YP_014677.1| methyltransferase [Listeria monocytogenes serotype 4b str. F2365]
gi|47093605|ref|ZP_00231363.1| methyltransferase, putative [Listeria monocytogenes str. 4b H7858]
gi|226224659|ref|YP_002758766.1| hypothetical protein Lm4b_02074 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826192|ref|ZP_05231193.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254854011|ref|ZP_05243359.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254933481|ref|ZP_05266840.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|255522357|ref|ZP_05389594.1| hypothetical protein LmonocFSL_14292 [Listeria monocytogenes FSL
J1-175]
gi|300765488|ref|ZP_07075469.1| hypothetical protein LMHG_12358 [Listeria monocytogenes FSL N1-017]
gi|386732796|ref|YP_006206292.1| hypothetical protein MUO_10535 [Listeria monocytogenes 07PF0776]
gi|404281667|ref|YP_006682565.1| methyltransferase [Listeria monocytogenes SLCC2755]
gi|404287478|ref|YP_006694064.1| methyltransferase [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750408|ref|YP_006673874.1| methyltransferase [Listeria monocytogenes ATCC 19117]
gi|405753281|ref|YP_006676746.1| methyltransferase [Listeria monocytogenes SLCC2378]
gi|405756225|ref|YP_006679689.1| methyltransferase [Listeria monocytogenes SLCC2540]
gi|406704841|ref|YP_006755195.1| methyltransferase, putative [Listeria monocytogenes L312]
gi|417315704|ref|ZP_12102376.1| hypothetical protein LM1816_13242 [Listeria monocytogenes J1816]
gi|417318143|ref|ZP_12104736.1| hypothetical protein LM220_00940 [Listeria monocytogenes J1-220]
gi|424823822|ref|ZP_18248835.1| Methyltransferase [Listeria monocytogenes str. Scott A]
gi|46881559|gb|AAT04854.1| putative methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47018029|gb|EAL08804.1| methyltransferase, putative [Listeria monocytogenes str. 4b H7858]
gi|225877121|emb|CAS05833.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607400|gb|EEW20008.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293585045|gb|EFF97077.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293595431|gb|EFG03192.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513799|gb|EFK40865.1| hypothetical protein LMHG_12358 [Listeria monocytogenes FSL N1-017]
gi|328466033|gb|EGF37209.1| hypothetical protein LM1816_13242 [Listeria monocytogenes J1816]
gi|328472642|gb|EGF43504.1| hypothetical protein LM220_00940 [Listeria monocytogenes J1-220]
gi|332312502|gb|EGJ25597.1| Methyltransferase [Listeria monocytogenes str. Scott A]
gi|384391554|gb|AFH80624.1| hypothetical protein MUO_10535 [Listeria monocytogenes 07PF0776]
gi|404219608|emb|CBY70972.1| methyltransferase, putative [Listeria monocytogenes ATCC 19117]
gi|404222481|emb|CBY73844.1| putative methyltransferase [Listeria monocytogenes SLCC2378]
gi|404225425|emb|CBY76787.1| putative methyltransferase [Listeria monocytogenes SLCC2540]
gi|404228302|emb|CBY49707.1| putative methyltransferase [Listeria monocytogenes SLCC2755]
gi|404246407|emb|CBY04632.1| methyltransferase, putative [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361871|emb|CBY68144.1| methyltransferase, putative [Listeria monocytogenes L312]
Length = 185
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAALAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLVTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|302874761|ref|YP_003843394.1| methyltransferase [Clostridium cellulovorans 743B]
gi|307690624|ref|ZP_07633070.1| methyltransferase [Clostridium cellulovorans 743B]
gi|302577618|gb|ADL51630.1| methyltransferase [Clostridium cellulovorans 743B]
Length = 185
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +K+LSP M+ RP ++ VK + F I+Q+ + D++SGTGS
Sbjct: 1 MRIISGLAKGRKILSPDSMETRPTLDRVKESIFSIIQN------KIYDATVTDIFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + + V+ P L N+E F D+ + T+ ++ + E + K
Sbjct: 55 LGLEAASRGAKQCYLVDRSPSAYG-YLQKNVENLKFQDICT--TLNMDAY-ESLKHCHKK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + + L+ +D IV + ++ + L R
Sbjct: 111 GVTFDIIFIDPPYAKNMIPKAVEMVFEMKLLKEDGIIVTKIDSGEEIYEGYETLNLYDKR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|21223923|ref|NP_629702.1| DNA methylase [Streptomyces coelicolor A3(2)]
gi|4007726|emb|CAA22410.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 195
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V S+ E RAEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + +G ++ + VE R
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLGTEALVTVERSTRGGEFRWPHGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 EAIRARRYG 178
>gi|397906406|ref|ZP_10507213.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
gi|397160549|emb|CCJ34550.1| Ribosomal RNA small subunit methyltransferase D [Caloramator
australicus RC3]
Length = 187
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ + + +P+GM+ RP ++ VK + F+I+ + + LD+++G+G+
Sbjct: 1 MRIITGEAKGRIIKAPEGMNTRPTLDRVKESVFNIISN------KIYDAIVLDMFAGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+G+EAISRG F+E D VL N++ F D S + + ++ L + E F
Sbjct: 55 LGLEAISRGAKFCTFIEKDKSAYK-VLKENIKNLNFEDRSKAYFGDSFKIIKNLSK-ENF 112
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+D + + PPY + + IS++ + ++FI+ E + D+ + G
Sbjct: 113 -----KYDLIFLDPPYGRGMVQRAVEAISENRIYNDNTFIISELDEKDDIPEIVGIFKNF 167
Query: 286 KDRRFGRTHLAIY 298
+ ++GR + +
Sbjct: 168 RTEKYGRCKIIFW 180
>gi|300361484|ref|ZP_07057661.1| probable methyltransferase [Lactobacillus gasseri JV-V03]
gi|300354103|gb|EFJ69974.1| probable methyltransferase [Lactobacillus gasseri JV-V03]
Length = 182
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G GR LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG V++ ++ N+E T D + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDSAVLVDISGQACQ-IIRKNVELTKEEDRFRV----LKCSDNRAIKILN 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
++G FD + + PPY +M ++ ++ L+ ++ IV E ++ D + IK
Sbjct: 109 EEGKKFDLIFLDPPYAKQKIVKIMTKLLENDLLNDNALIVAETDEHDELPDVSAFSI-IK 167
Query: 287 DRRFGRTHLAIY 298
D + GRT + +Y
Sbjct: 168 DHQLGRTKVKVY 179
>gi|86356482|ref|YP_468374.1| methylase [Rhizobium etli CFN 42]
gi|86280584|gb|ABC89647.1| putative methylase protein [Rhizobium etli CFN 42]
Length = 186
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC-GCLVKI 285
G PFD + PPY E MA + + + V+E R D++ + V +
Sbjct: 111 GNLEPFDVLFADPPYGKGLGEKAMAAAAVGGWLRPGAIAVLEE--RADIVVSVHSSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|289768870|ref|ZP_06528248.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
gi|289699069|gb|EFD66498.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
Length = 195
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V S+ E RAEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVRA---------NVDSLGLPGAEVRAGRAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + +G ++ + VE R
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLGTEALVTVERSTRGGEFRWPHGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 EAIRARRYG 178
>gi|219685880|ref|ZP_03540686.1| putative methyltransferase [Borrelia garinii Far04]
gi|219672579|gb|EED29612.1| putative methyltransferase [Borrelia garinii Far04]
Length = 189
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGRKILFPKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F ++AE F+G
Sbjct: 65 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQKAEDFLG 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ ISK ++ I++ P D+
Sbjct: 115 KKDLFYDFIYLDPPFNYQNKINLLEIISKGKILNDKVSIIMHCPFGEDL 163
>gi|424714931|ref|YP_007015646.1| Putative rRNA methyltransferase ylbH [Listeria monocytogenes
serotype 4b str. LL195]
gi|424014115|emb|CCO64655.1| Putative rRNA methyltransferase ylbH [Listeria monocytogenes
serotype 4b str. LL195]
Length = 189
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 59 LGIEALSRGAERAVFIDQAALAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 113
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 114 NEWKFDLVFLDPPYKKQQLEKLLVTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 173
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 174 VSYGITVLSIF 184
>gi|424873903|ref|ZP_18297565.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393169604|gb|EJC69651.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 186
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E MA ++ + + V+E R D++ + V +
Sbjct: 111 GNLDPFDVLFADPPYGKGLGEKAMAAAAEGGWLRPGAIAVLEE--RADIVVSVHPAYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K]
gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K]
Length = 179
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F V PPY L A A G+ V E+ R +D G L +
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGR---AVAEHDARRPPVDRIGPLSLVDR 165
Query: 288 RRFGRTHLAIYGPD 301
R +G T ++IY D
Sbjct: 166 RTYGGTGISIYQRD 179
>gi|224534386|ref|ZP_03674964.1| putative methyltransferase [Borrelia spielmanii A14S]
gi|224514488|gb|EEF84804.1| putative methyltransferase [Borrelia spielmanii A14S]
Length = 189
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L+ V GK + KK+L PK +RP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 LMYVSSGKYKGKKILFPKTGVIRPVMSIVREAFFSIIFK------DIINSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF-V 226
+ +EA+SRG S H VE + S L+ N + V + + F +RAE F V
Sbjct: 65 IMSVEALSRGASLAHLVECNRKTKST-LVKNFSF-----VEEFY----KFFFQRAEDFLV 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ I K ++ I++ P ++
Sbjct: 115 KKDLFYDFIYLDPPFNYKNKINLLEIILKGKILNDKVSIIMHCPFSENL 163
>gi|403378859|ref|ZP_10920916.1| N6-adenine-specific methylase [Paenibacillus sp. JC66]
Length = 190
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + G RP + VK A F IL L+ G LDL++GTG
Sbjct: 1 MRVISGTARGRPLKAVPGEGTRPTTDKVKEAVFSILNP------YLQGGWVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++++ V V+ N++ GF + + ++ + L + +
Sbjct: 55 LGIEALSRGMDHAVFIDLERKSV-EVIRHNIDTAGFREQAEVYRNEAQRAL---KALAKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY E L+ ++ L+ ++ IV E+ +T L +I+
Sbjct: 111 EVKFALVFLDPPYRLKTMEELLLKLVGYELLEPEAIIVAEHDRSNRYPETVDGLQQIRRA 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 DYGDTAITIY 180
>gi|254780405|ref|YP_003064818.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040082|gb|ACT56878.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 189
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R+ L +P+ +RP K A FDIL P L R L++++GTGS
Sbjct: 4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHV--YPVFLDSTRMLNIFAGTGS 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG EA+SRGC V FV+ + + ++ N E G V + L + +G
Sbjct: 62 VGFEALSRGCHYVLFVDNNSESIR-LIRRNSELLG---VEKNCNIFFRDVLRLGK--IGN 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC----GCLVK 284
PF + + PPY + +A I K + ++ +++E + TC
Sbjct: 116 ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE-----EYAGTCISVGAAFHF 170
Query: 285 IKDRRFGRTHLAIY 298
+++R++G T + +
Sbjct: 171 LQERKYGDTKIYFF 184
>gi|320536908|ref|ZP_08036898.1| RNA methyltransferase, RsmD family [Treponema phagedenis F0421]
gi|320146242|gb|EFW37868.1| RNA methyltransferase, RsmD family [Treponema phagedenis F0421]
Length = 177
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + ++++ PKG+ +RP M+ ++ + F IL G +LDL+SG+G
Sbjct: 1 MRITGGTLKNRQIICPKGI-IRPAMDRMRESLFAILGDLHGLS-------FLDLFSGSGI 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V VE D P ++ N + + + VE +L+R ++
Sbjct: 53 CGLEAYSRGAYPVVLVEKDTAKFPVLLKNASMAEKRI-------NCKNLSVELYLKRTQE 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ ++ L+ I +S+++ +++ P ++ D G L +
Sbjct: 106 ------QFDIIYIDPPFPYRFHQDLLYSIGESSVLCDKGLVLMHRPKEKELPDRIGSLQR 159
Query: 285 IKDRRFGRTHLAIY 298
+ R +GR+ + Y
Sbjct: 160 VDQRIYGRSIVDFY 173
>gi|401685013|ref|ZP_10816883.1| RNA methyltransferase, RsmD family [Streptococcus sp. BS35b]
gi|418974307|ref|ZP_13522219.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK1074]
gi|383349211|gb|EID27157.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK1074]
gi|400183218|gb|EJO17475.1| RNA methyltransferase, RsmD family [Streptococcus sp. BS35b]
Length = 179
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEHV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 NGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSQEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|379795494|ref|YP_005325492.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872484|emb|CCE58823.1| putative methylase [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 180
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKSLESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V ++ NLE ++ S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-IIKSNLENLDLVEQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+ FD + + PPY + + QIS+ L+ ++ IV E+
Sbjct: 109 EIQFDIIFLDPPYEKGLIDKALKQISEFNLLKENGIIVCEF 149
>gi|167630221|ref|YP_001680720.1| methyltransferase [Heliobacterium modesticaldum Ice1]
gi|167592961|gb|ABZ84709.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
Length = 195
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR ++L+S KG + RP + VK A F +L AG C + + LDL++GTG+
Sbjct: 1 MRIISGQARGRRLVSVKGWETRPTADRVKEALFSVL--AGRCLEA----QCLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V++VE P V+ N+E TG + V + + ++ + +
Sbjct: 55 LGLEALSRGAAFVYWVEKHP-AACAVIAKNIEATGL----NRGKVLKQDVRQACQRLLAE 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY + + + + + + L+ +++E + + G L++ K
Sbjct: 110 GRRFDLIFADPPYKR-ELWLPVLESAAAGLLATAGTLILESSRDEGLPEEFGSLIRRKQD 168
Query: 289 RFGRTHLAIY 298
R+G T + Y
Sbjct: 169 RYGDTMIHYY 178
>gi|229162865|ref|ZP_04290822.1| Methyltransferase [Bacillus cereus R309803]
gi|228620747|gb|EEK77616.1| Methyltransferase [Bacillus cereus R309803]
Length = 188
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVSGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAI-KVIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + D+ G L K++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISVMDQHGLLHSDGLIMAEHGNDVVLPDSIGGLAKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|423612145|ref|ZP_17588006.1| RsmD family RNA methyltransferase [Bacillus cereus VD107]
gi|401247152|gb|EJR53496.1| RsmD family RNA methyltransferase [Bacillus cereus VD107]
Length = 188
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YYDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---- 224
+GIEAISRG + FV+ D + V+ NLE IH + E + AE+
Sbjct: 55 LGIEAISRGIDKAIFVDRDSKAIK-VIHQNLESC------RIHE-QAEVYRNDAERAVKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ ++ FD + + PPY L++ + + L+ +D I+ E+ + D+ G LVK
Sbjct: 107 LIKREISFDLILIDPPYKDQRIVSLISVMDQHGLLNEDGLIMAEHGDDVVLPDSIGELVK 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T ++IY
Sbjct: 167 VRAENYGITAISIY 180
>gi|168334445|ref|ZP_02692620.1| hypothetical protein Epulo_05694 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP+G++ RP + +K F+I+ L +LDL+SG+G
Sbjct: 1 MRIISGKFRGTKLLSPEGLNTRPTTDRIKETLFNIIN------FDLLECSFLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + + +L NL + + + + + E +
Sbjct: 55 IGIEALSRGAKTATFVENNKAAFA-ILEKNLLKIRLQNSAITYKIDIN---EALNLIYLQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE-----YPLRTDMLDTCGCLV 283
FD + + PPY V+ + ++ I + L+ I++E P+ D L+
Sbjct: 111 KETFDIIFMDPPYHYVNLQQIIDFIVTNDLLTPSGKIIIEDASDANPIYNDK------LI 164
Query: 284 KIKDRRFGRTHLAIY 298
IK++ + T ++I+
Sbjct: 165 LIKEKVYTTTRISIF 179
>gi|339009327|ref|ZP_08641899.1| hypothetical protein BRLA_c31460 [Brevibacillus laterosporus LMG
15441]
gi|338773805|gb|EGP33336.1| hypothetical protein BRLA_c31460 [Brevibacillus laterosporus LMG
15441]
Length = 188
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R + L + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVISGEHRGRSLAAVPGTSTRPTTDKVKESIFNMI-------GPYFDGEWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG ++ FV+ D N + NL+ + + ++ + RA + +
Sbjct: 54 GLGIEALSRGAAKAIFVDRDNKAF-NTVKQNLKTLRLDEQAEVYKIDS----ARALKVLS 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G FD + + PPY E + Q+ + +V D++IV E+ + + + G + +
Sbjct: 109 TRGVQFDLVFLDPPYAKQKLEQEIEQLQQLHMVAADAWIVTEHDAKLTLPEQIGMCEQYR 168
Query: 287 DRRFGRTHLAIY 298
+G T + IY
Sbjct: 169 CSTYGDTRVTIY 180
>gi|302392173|ref|YP_003827993.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
gi|302204250|gb|ADL12928.1| methyltransferase [Acetohalobium arabaticum DSM 5501]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 12/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK++ L S G +VRP ++ VK A F+IL + +LDLY+G G
Sbjct: 1 MRVIAGKSKGHNLRSISGTEVRPTIDRVKEALFNIL------GPEIIDIDFLDLYAGFGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + ++ NL+ TG + + V T L R F +
Sbjct: 55 LGIEALSRGAASSTFIDNSARQIG-IIEENLKLTGLEQQAEVIQGDVLTQLGR---FTPQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY A E + +I + L+ + I VE+ + ++ L I++R
Sbjct: 111 --SFDIIVMDPPYQAGLLEPTIEKIMQYDLLKEAGIISVEHHKQDEIAIEFDNLELIRER 168
Query: 289 RFGRTHLAIY 298
+G T L++Y
Sbjct: 169 DYGNTCLSLY 178
>gi|116250667|ref|YP_766505.1| hypothetical protein RL0893 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255315|emb|CAK06390.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 186
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E MA ++ + + V+E R D++ + V +
Sbjct: 111 GNLDPFDVLFADPPYGKGLGEKAMAAAAEGGWLRPGAIAVLEE--RADIVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|255024555|ref|ZP_05296541.1| hypothetical protein LmonocyFSL_15861 [Listeria monocytogenes FSL
J1-208]
Length = 185
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDIVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLXK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|444913886|ref|ZP_21234032.1| Ribosomal RNA small subunit methyltransferase D [Cystobacter fuscus
DSM 2262]
gi|444715184|gb|ELW56055.1| Ribosomal RNA small subunit methyltransferase D [Cystobacter fuscus
DSM 2262]
Length = 185
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 20/196 (10%)
Query: 109 LQVLGGKARRKKLLSPKGM--DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGSAKGRALAGPKATSKHIRPTADRVRETLFNVLGQ------WLEGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAE 223
G++G+EA+SRG V V+ D ++ + N + GF + RVE + RA
Sbjct: 55 GALGLEAVSRGAKGVVLVDSDREALA-LCRANTDTLGF-------SARVEVLAQPVARAL 106
Query: 224 QFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ +G+ F + PPY A E ++ +S L+ + +V+E+ R +
Sbjct: 107 ETLGRRADRFQLIFADPPYAARVVETVLEGLSAHQLLAEGGTVVIEHDKREPAPEAHAGF 166
Query: 283 VKIKDRRFGRTHLAIY 298
++ RRFG T ++++
Sbjct: 167 TRVDQRRFGDTLVSLF 182
>gi|418410794|ref|ZP_12984099.1| methyltransferase [Agrobacterium tumefaciens 5A]
gi|358002913|gb|EHJ95249.1| methyltransferase [Agrobacterium tumefaciens 5A]
Length = 185
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRNLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK-I 285
+ PFD + PPY E A + + ++E R D++ + K +
Sbjct: 111 NNIEPFDLLFADPPYGQGHGEKAFAAAHAGGWLAPGALAILEE--RGDVVVNVEPVFKPL 168
Query: 286 KDRRFGRTHLAIY 298
+ R FG + + Y
Sbjct: 169 ESRIFGDSKMHFY 181
>gi|422810130|ref|ZP_16858541.1| Ribosomal RNA small subunit methyltransferase D [Listeria
monocytogenes FSL J1-208]
gi|378751794|gb|EHY62382.1| Ribosomal RNA small subunit methyltransferase D [Listeria
monocytogenes FSL J1-208]
Length = 185
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ + L + G + RP + VK + F I+ G LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII-------GPFFDGDIVLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG F++ + + NLE F + + ++ E RA + +
Sbjct: 54 GLGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLH 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
K+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 109 KNEWKFDLVFLDPPYKKQQLEKLLGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIK 168
Query: 287 DRRFGRTHLAIY 298
+G T L+I+
Sbjct: 169 SVSYGITVLSIF 180
>gi|119717508|ref|YP_924473.1| putative methyltransferase [Nocardioides sp. JS614]
gi|119538169|gb|ABL82786.1| putative methyltransferase [Nocardioides sp. JS614]
Length = 198
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG+A +++ +P+G RP + V+ A F ++S G SL R LDLY+G+G
Sbjct: 1 MTRIIGGRAGGRRINTPRGAATRPTSDRVREALFSAIESWCG---SLHGLRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA SRG V VE D + ++ N GF + + V T L R G
Sbjct: 58 AVGLEAWSRGAEAVTLVESDR-RTAALVSDNARTLGFAG-ADVVAASVATVLAR-----G 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVL--MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
P+D + + PPY D + +A + + + +VVE R+ L
Sbjct: 111 AAAPYDVVFLDPPYPLEDAALGGDLALLVAHGWLAAGALVVVERSSRSPEPSWPAGLSGT 170
Query: 286 KDRRFGRTHL 295
+ +R+G T L
Sbjct: 171 RHKRYGETTL 180
>gi|108760564|ref|YP_631581.1| methyltransferase [Myxococcus xanthus DK 1622]
gi|108464444|gb|ABF89629.1| putative methyltransferase [Myxococcus xanthus DK 1622]
Length = 185
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKG--MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK + +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGTAKGRALAGPKSSSLHIRPTADRVRETLFNVLGQ------FLDGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + V+ D ++ + N + G + V LE ++
Sbjct: 55 GALGLEAVSRGAGQAVLVDQDREALT-LCRENAQAVGLAGQVEVLAAPVARALETLKR-- 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ F+ + PPY A E ++ I + L+ +VVE+ R DT L +
Sbjct: 112 -RGDRFELIFADPPYAARVVETVLDGIVAAGLLTPSGMVVVEHDKREAAPDTHAGLDRED 170
Query: 287 DRRFGRTHLAIY 298
RRFG T ++ Y
Sbjct: 171 QRRFGDTLVSFY 182
>gi|330991269|ref|ZP_08315220.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
gi|329761288|gb|EGG77781.1| Ribosomal RNA small subunit methyltransferase D [Gluconacetobacter
sp. SXCC-1]
Length = 191
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA--GGCPASLRPGRWLDLYSGT 166
++++ G+ R + L +P G RP + V+ A FD L A G +LR R LD ++GT
Sbjct: 1 MRIIAGECRGRTLHAPAGQTTRPTADRVRQALFDTLAHAPWAGLD-TLRGARVLDGFAGT 59
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + FVE D + L N+ G S TVR L
Sbjct: 60 GALGLEALSRGAASACFVERDRAAL-RALRENIAACGMQGRS---TVRALDMLRLPP--A 113
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY------PLRTDMLDTCG 280
G GP D + + PPY +A +++ +G + +VVE P+ TD L
Sbjct: 114 GAAGPVDLVFLDPPYNQDLPARALAVLARGGWLGPSTLVVVEMAAGEDPPVETDRL---- 169
Query: 281 CLVKIKDRRFGRTHLAIY 298
+ RR G L ++
Sbjct: 170 ----LLARRHGAAQLYVW 183
>gi|228941018|ref|ZP_04103576.1| Methyltransferase [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973949|ref|ZP_04134524.1| Methyltransferase [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980538|ref|ZP_04140848.1| Methyltransferase [Bacillus thuringiensis Bt407]
gi|384187991|ref|YP_005573887.1| methyltransferase [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676306|ref|YP_006928677.1| putative rRNA methyltransferase YlbH [Bacillus thuringiensis Bt407]
gi|423385432|ref|ZP_17362688.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1X1-2]
gi|423528210|ref|ZP_17504655.1| RsmD family RNA methyltransferase [Bacillus cereus HuB1-1]
gi|452200372|ref|YP_007480453.1| Methyltransferase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228779358|gb|EEM27615.1| Methyltransferase [Bacillus thuringiensis Bt407]
gi|228785815|gb|EEM33819.1| Methyltransferase [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818697|gb|EEM64764.1| Methyltransferase [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941700|gb|AEA17596.1| methyltransferase [Bacillus thuringiensis serovar chinensis CT-43]
gi|401635488|gb|EJS53243.1| RsmD family RNA methyltransferase [Bacillus cereus BAG1X1-2]
gi|402451873|gb|EJV83692.1| RsmD family RNA methyltransferase [Bacillus cereus HuB1-1]
gi|409175435|gb|AFV19740.1| putative rRNA methyltransferase YlbH [Bacillus thuringiensis Bt407]
gi|452105765|gb|AGG02705.1| Methyltransferase [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 188
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + D+ G LVK++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISVMDQHGLLHSDGLIMAEHGNDVVLPDSIGKLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|338732009|ref|YP_004670482.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
gi|336481392|emb|CCB87991.1| putative rRNA methyltransferase ylbH [Simkania negevensis Z]
Length = 192
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GGK + KL++PKG RP +E ++ F+I C ++ +LD+++G+G+
Sbjct: 1 MRIAGGKFKNHKLIAPKGNTTRPTLEKLRQTVFNI------CQHTIEDATFLDVFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E + + + NL L +S TV L ++ K
Sbjct: 55 MGLEALSRGASHATFLEKNRLALQ-AIYKNLVN---LQLSDHATVFPGDALLSLKKLAQK 110
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 111 NASFDLIYIDPPY 123
>gi|424909578|ref|ZP_18332955.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392845609|gb|EJA98131.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 185
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ PFD + PPY E A + + ++E R D+ K+
Sbjct: 111 NNIEPFDLLFADPPYGYGHGEKAFAAAHSGGWLNAGALAILEE--RGDVTVNVDPAFKLL 168
Query: 287 DRR-FGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|333371201|ref|ZP_08463163.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
gi|332976645|gb|EGK13486.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
8437]
Length = 199
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKA+ ++L + GM VRP + V+ + F I+ G LDL++G+GS
Sbjct: 1 MRIIAGKAKGRRLKTVPGMKVRPTTDRVRESLFQIIGP------YFEGGSVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E +SRG FV+ P V V NL+ GF D + ++ L +
Sbjct: 55 LGLETLSRGAERAVFVDHSPASVETVR-KNLQVAGFADRAEVYRRDARAAL---RILARR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F Y+ + PPY L+ IS+ L+ ++ E+ + + L ++++
Sbjct: 111 KLSFRYIFLDPPYRETFLPELLTYISEHGLLEPRGVLMAEHGSASRLQPRYNHLSRVREL 170
Query: 289 RFGRTHLAIY 298
+G+T + +Y
Sbjct: 171 VYGQTVIHLY 180
>gi|345009580|ref|YP_004811934.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
gi|344035929|gb|AEM81654.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
Length = 195
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLDGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE DP + +V ++ E RAEQ +
Sbjct: 58 AVGLEALSRGAGHVLLVESDPRAARTI---------RQNVRALGLPGAELRTGRAEQTIT 108
Query: 228 KD----GPFDYMSVTPPYTAVDY---EVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
GP+D + + PPY D E+L+ + LV D+ + VE R
Sbjct: 109 GQAPVTGPYDVVFLDPPYAVTDAELREILLTLLGNGWLV-ADALVTVERSTRGGEFVWPA 167
Query: 281 CLVKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 168 GFEGLRARRYGEGTL 182
>gi|398304255|ref|ZP_10507841.1| methyltransferase [Bacillus vallismortis DV1-F-3]
Length = 184
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ GR LDL++G+G
Sbjct: 1 MRVISGSKKGRSLKAVPGTSTRPTTDKVKESIFNMI------GPYFDGGRGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ + ++ E L+ A + +
Sbjct: 55 LGIEALSRGFEHCIFVDRDFKAIQTVK-SNLKSLELTKHAQVYRNDAERALQAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY + L+ I + ++ FIV E+ ++ +T G LV +
Sbjct: 111 ETGFRGIFLDPPYKEQRLKALLTMIDEYQMLEDGGFIVAEHDREVELPETVGNLVMTRKE 170
Query: 289 RFGRTHLAIY 298
+G T +AIY
Sbjct: 171 IYGLTGVAIY 180
>gi|78187053|ref|YP_375096.1| hypothetical protein Plut_1191 [Chlorobium luteolum DSM 273]
gi|78166955|gb|ABB24053.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 178
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 27/175 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS----AGGCPASLRPGRWLDLYS 164
+Q++ G+ R +++ + DVRP VK + FDIL S G C LDL++
Sbjct: 1 MQIIAGRYRGRRITTAPLQDVRPCSSRVKKSIFDILHSRMDFEGSCV--------LDLFA 52
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVS---SIHTVRVETFLE 220
G GS+G E +SRG S V FV+ P V + +L T G L V SI V FL+
Sbjct: 53 GFGSLGFETLSRGASRVTFVDRHP-----VSLRSLRKTAGELKVEEMVSIVNEDVTLFLQ 107
Query: 221 RAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ G FD + PPY DY L+ I +L+ +D ++++E+ D
Sbjct: 108 ------SETGSFDLIFADPPYAWEDYPRLIEGIMAGSLLEEDGWLLIEHDAHGDF 156
>gi|421590335|ref|ZP_16035353.1| methylase [Rhizobium sp. Pop5]
gi|403704531|gb|EJZ20390.1| methylase [Rhizobium sp. Pop5]
Length = 186
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRMLRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E MA + + + V+E R D++ + V +
Sbjct: 111 GNLEPFDVLFADPPYGKGLGEKAMAAAAVGGWLRPGAIAVLEE--RADVVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|330466260|ref|YP_004404003.1| putative methyltransferase [Verrucosispora maris AB-18-032]
gi|328809231|gb|AEB43403.1| putative methyltransferase [Verrucosispora maris AB-18-032]
Length = 187
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G +++ P G RP + V+ A F +Q L R+ DLY+G+G
Sbjct: 1 MTRIVAGSLGGRRIAVPPGSGTRPTADRVREALFSSVQ----AELDLVGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + V+ N+ + + T +V T L G
Sbjct: 57 AVGLEALSRGAGHVLLVESDA-RAARVIRENMAILRAAPAARLVTGKVSTVLA-----AG 110
Query: 228 KDG-PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
DG P+D + PPY+ D V ++ + + +D+ +VVE R+ +D +
Sbjct: 111 PDGEPYDVVFADPPYSLSDDGVRAMLTALVDGDWLAQDAMVVVERSTRSGPVDWVEGITG 170
Query: 285 IKDRRFGRTHL 295
+ RR+G T L
Sbjct: 171 QRSRRYGETTL 181
>gi|317050822|ref|YP_004111938.1| methyltransferase [Desulfurispirillum indicum S5]
gi|316945906|gb|ADU65382.1| methyltransferase [Desulfurispirillum indicum S5]
Length = 182
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +L +PKG VRP + V+ F++L +L+ R+LDL+ G+G+
Sbjct: 1 MRIISGTRRGMRLSAPKGDAVRPTADAVRENLFNLLGQ------NLQGKRFLDLFGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA SRG S V VE P + V N++ + ++ +L R+ Q
Sbjct: 55 VGLEAASRGASVV-IVEKSPLALRCVE-QNIQHCRLQEQVTVQRGDALAYLARSPQ---- 108
Query: 229 DGPFDYMSVTPPYTAVDY--EVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
FD + V PP+ Y EV M +++ S+++ D +V+E+ R + G ++
Sbjct: 109 --SFDVIFVDPPFDQTHYYGEV-MEKVANSSVLATDGLLVLEHRSREPVAAASG--FELH 163
Query: 287 DRR-FGRTHLAIY 298
D+R +G+ L+ +
Sbjct: 164 DQRAYGKNALSFF 176
>gi|422410308|ref|ZP_16487269.1| RNA methyltransferase, RsmD family [Listeria monocytogenes FSL
F2-208]
gi|313607724|gb|EFR83952.1| RNA methyltransferase, RsmD family [Listeria monocytogenes FSL
F2-208]
Length = 185
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLGILEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|86748297|ref|YP_484793.1| hypothetical protein RPB_1172 [Rhodopseudomonas palustris HaA2]
gi|86571325|gb|ABD05882.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 187
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDP--IGDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G VS ++ R T L A
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGVSKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + + PPY E +A + + D+ ++VE
Sbjct: 115 --PFSLVFLDPPYRMGFAEKALASLRDGGWLTPDALVIVE 152
>gi|354614287|ref|ZP_09032161.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
gi|353221349|gb|EHB85713.1| Protein of unknown function methylase putative, partial
[Saccharomonospora paurometabolica YIM 90007]
Length = 123
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E V+ A F+ L +AG LR R LDLY+G+
Sbjct: 1 MTRIVAGRAGGRTLSVPPKG--TRPTSERVREALFNALDAAG----DLRGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG ++ FVE D V VL NL G + VE L
Sbjct: 55 GALGLEALSRGAADAEFVESDRAAV-RVLRDNLARVGL--GGRVRHGTVEAVLA-----A 106
Query: 227 GKDGPFDYMSVTPPYT 242
G DGP D + PPY
Sbjct: 107 GPDGPVDLVLADPPYA 122
>gi|420239800|ref|ZP_14744086.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
gi|398078530|gb|EJL69428.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF080]
Length = 186
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK ++RP ++ + + F+I+ P +L GR +DL++GTG+
Sbjct: 1 MRIVGGEFRGRSLATPKTNEIRPTIDRTRESLFNIIGHV--YPQALDGGRVIDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W ++ S+ L R +G
Sbjct: 59 VGLEALSRGCKSALFVE------NGVEGRGLLWE---NIDSLGLHGRARILRRDATKLGV 109
Query: 229 DG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK- 284
PF ++ PPY E M + + ++E R D+ + K
Sbjct: 110 ANNIEPFHFLFADPPYGQGLGEGAMLSAHAGGWLAPGALAILEE--RADITPAVDAVFKF 167
Query: 285 IKDRRFGRTHLAIY 298
++ R FG T +A +
Sbjct: 168 LESRTFGDTRMAFF 181
>gi|153941224|ref|YP_001391790.1| methyltransferase [Clostridium botulinum F str. Langeland]
gi|384462799|ref|YP_005675394.1| RsmD family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152937120|gb|ABS42618.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
Langeland]
gi|295319816|gb|ADG00194.1| RNA methyltransferase, RsmD family [Clostridium botulinum F str.
230613]
Length = 185
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +K+LSP+ RP ++ +K + F+I+Q+ + LD+++GTGS
Sbjct: 1 MRIISGSARGRKILSPQSSVTRPTLDRIKESIFNIIQN------QVYGSGVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + V+ +L N++ F D+ + + L E+F K
Sbjct: 55 LGLEAASRGAKFSYLVDKSSETYP-LLRENIKNLKFEDLCKSFNMDAYSAL---EEFARK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M I K L+ K+ IV + ++ + + R
Sbjct: 111 SIVFDLIFIDPPYAKEMIPPAMESIDKKELLNKEGLIVTKIDSSEEIYEGTERIKLFDHR 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCFY 180
>gi|407477666|ref|YP_006791543.1| hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
gi|407061745|gb|AFS70935.1| Hypothetical protein Eab7_1827 [Exiguobacterium antarcticum B7]
Length = 189
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++ + G RP + VK + F+++ G+ LDL++G+G
Sbjct: 1 MRVISGERKGMRIKAVPGDQTRPTTDKVKESLFNVI------GPYFNGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ V + NLE T D S + +R + + AE +
Sbjct: 55 LGIEALSRGCDEAVFVDQSFKAVQTIK-ENLETTRLTDRSRV--LRKDVTVALAE--LAT 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ PF + + PPY +A I + ++ + I+ E+ T++ D G L IK
Sbjct: 110 EEPFKLIFLDPPYAKEQLADQVAYIERHDMLTDNGVIICEHGSETELPDRIGRLTVIKRL 169
Query: 289 RF 290
R+
Sbjct: 170 RY 171
>gi|331269672|ref|YP_004396164.1| putative methyltransferase [Clostridium botulinum BKT015925]
gi|329126222|gb|AEB76167.1| putative methyltransferase [Clostridium botulinum BKT015925]
Length = 187
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 3 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVAVDVFAGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + + ++ P V L N++ F + + + L+ F K
Sbjct: 57 LGLESVSRGAKQCYLIDRYP-VTFKRLQQNVKDLKFENECTCLNMDSYAALK---DFAKK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + IS+ L+ +D IV + ++ +V ++DR
Sbjct: 113 NKIFDLIFIDPPYAKEMIPPAIEIISQEKLLHEDGLIVCKIDSSEEIYQGNDDIVLVQDR 172
Query: 289 RFGRTHLAIYG 299
R+G T + Y
Sbjct: 173 RYGNTTVCFYA 183
>gi|217963800|ref|YP_002349478.1| RsmD family RNA methyltransferase [Listeria monocytogenes HCC23]
gi|386008817|ref|YP_005927095.1| methyltransferase [Listeria monocytogenes L99]
gi|386027428|ref|YP_005948204.1| RsmD family RNA methyltransferase [Listeria monocytogenes M7]
gi|217333070|gb|ACK38864.1| RNA methyltransferase, RsmD family [Listeria monocytogenes HCC23]
gi|307571627|emb|CAR84806.1| methyltransferase, putative [Listeria monocytogenes L99]
gi|336024009|gb|AEH93146.1| RNA methyltransferase, RsmD family [Listeria monocytogenes M7]
Length = 185
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDMVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQF 225
+GIEA+SRG F++ + + NLE F T R E + ERA +
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIH-QNLEGCHF-------TERAEVYRNDAERALKL 106
Query: 226 VGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G K
Sbjct: 107 LHKNEWKFDLVFLDPPYKKQQLEKLLGILEKLELVNENGRIICEHDKEAIMPDTIGKFEK 166
Query: 285 IKDRRFGRTHLAIY 298
IK +G T L+I+
Sbjct: 167 IKSVSYGITVLSIF 180
>gi|315648197|ref|ZP_07901298.1| methyltransferase [Paenibacillus vortex V453]
gi|315276843|gb|EFU40186.1| methyltransferase [Paenibacillus vortex V453]
Length = 205
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ ++V+ G A+ + L S G RP + VK + F ++ G LDL++G
Sbjct: 2 NEAVRVVSGSAKGRPLKSVPGTSTRPTTDKVKESIFSMIGP------YFEGGTALDLFAG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TG +GIEA+SRG F++++P +S + NL+ + + I+ L+ E+
Sbjct: 56 TGGLGIEALSRGIDRAVFIDVEPKSISTIK-DNLKAARLEERAEIYRNDAARALKALEK- 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+ FD + + PPY + + LM +++ +L+ + +V+EY + + G +
Sbjct: 114 --RSFKFDLVFLDPPYRFKNGDELMVDMAERSLLQDLAVVVLEYESSYNYPEKFGDFCCL 171
Query: 286 KDRRFGRTHLAIYGPDWAQKK 306
+ ++G T ++IY + AQ +
Sbjct: 172 RTVKYGETAISIYRYEIAQDQ 192
>gi|238853444|ref|ZP_04643823.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri 202-4]
gi|238834016|gb|EEQ26274.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri 202-4]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFLERAEQ 224
++GIEA+SRG V++ ++ N+E T D V R L E+
Sbjct: 54 ALGIEAVSRGYDSAVLVDISGQACQ-IIRKNVELTKEEDRFRVLKCSDNRAIKILNEEEK 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY +M ++ K+ L+ +++ +V E ++ + G +
Sbjct: 113 ------KFDLIFLDPPYAKQKIAKIMTKLLKNNLLSENALVVAETDEHDELPEVSGFSI- 165
Query: 285 IKDRRFGRTHLAIY 298
IKD + GRT + +Y
Sbjct: 166 IKDHQLGRTKVKVY 179
>gi|422422767|ref|ZP_16499720.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
gi|313637000|gb|EFS02576.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL S4-171]
Length = 189
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 59 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 113
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ Q+ K ALV ++ I+ E+ M DT G VKIK
Sbjct: 114 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAVMPDTVGNFVKIKA 173
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 174 VSYGITVLSIF 184
>gi|335043411|ref|ZP_08536438.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
gi|333790025|gb|EGL55907.1| N6-adenine-specific methylase [Methylophaga aminisulfidivorans MP]
Length = 198
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 97 EKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP 156
+++ + RT L+++GG R +KL P+ +RP + + F+ LQ G
Sbjct: 3 KQNNKARTGAGTLRIIGGIWRGRKLGFPEVEGLRPTSDRTRETVFNWLQPHIGAS----- 57
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
R LDL++G+G++G EA SRG +EV VE D L N E L ++ H
Sbjct: 58 -RCLDLFAGSGALGFEAASRGAAEVVLVENDRQAFLK-LKQNAE---ALQAANCHIENTS 112
Query: 217 TFLERAEQFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
AEQ +G D FD + V PPY A + + L+ + I +EYP + D+
Sbjct: 113 -----AEQAIGVLDKSFDIVFVDPPYQADLWTKTAFALLSHKLLNDGAMIYLEYPAKHDL 167
Query: 276 LDTCGCLVKIKDRRFGRTHLAIY 298
D +K+++ G ++
Sbjct: 168 PDLPSAWYLLKEKKAGDVKYCLF 190
>gi|218283085|ref|ZP_03489180.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
gi|218216154|gb|EEC89692.1| hypothetical protein EUBIFOR_01766 [Eubacterium biforme DSM 3989]
Length = 183
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L SPK RP + +KGA F L + G +LD YSGTG+
Sbjct: 1 MRIVAGKYGSRSLKSPKNDATRPTQDKIKGAIFSSLGNI------FDGGNFLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG V+ + +S V+ N++ + I + T LER
Sbjct: 55 MGLEAVSRGMDHATLVDNNKGAIS-VIKENVKNLKADKETKIICGNIFTVLERLTL---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY + E L+ ++ +V D IVVE + K K++
Sbjct: 110 --KYDVVYIDPPYAKQENEKLIQKLDDLDMVKLDGVIVVESLEEEVWPERIASFTKYKEK 167
Query: 289 RFGRTHLAIY 298
+G T ++ Y
Sbjct: 168 TYGITRISYY 177
>gi|291278590|ref|YP_003495425.1| DNA methylase [Deferribacter desulfuricans SSM1]
gi|290753292|dbj|BAI79669.1| DNA methylase [Deferribacter desulfuricans SSM1]
Length = 176
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + L+SPK VRP + V+ A F L + + LDL++GTG+
Sbjct: 1 MRITGGELRGRSLISPKSSGVRPTSDKVRSAIFSKLYN------KVVDSYVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
GIEA+SRG V FV+++ + L+ N T F+ ++ + F + F
Sbjct: 55 FGIEALSRGAKFVTFVDINI----STLLKN---TSFIQNEKFEIIKSDVF----KAFKKL 103
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
+D + + PPY +D + L+ I L+ K ++ E +RT
Sbjct: 104 RIKYDIIFIDPPYGKIDSKELLNAIKSHQLIAKKGVLIYEESIRT 148
>gi|429759356|ref|ZP_19291855.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
gi|429179632|gb|EKY20871.1| RNA methyltransferase, RsmD family [Veillonella atypica KON]
Length = 183
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRILDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FDY+ PPY E + ++ AL D +V+E+
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDAL-ADDGVLVLEH 148
>gi|363897513|ref|ZP_09324052.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
gi|361959010|gb|EHL12307.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB7]
Length = 188
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPDGLDTRPTQDRIKETLFNIIQ------FDLMNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F + + + NL+ T F + S + + + + K
Sbjct: 55 LGIEALSRGAARAVFCDSARQAIL-CIEENLQKTHFKEQSLVLSGDYNGAI---NSLMRK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D F + + PPY E + ++ A V +D+ VVE L+ D
Sbjct: 111 DYHFGLVFMDPPYGRELAEKALIRLKDKAFVSQDTLFVVEAGLQEDF 157
>gi|335046120|ref|ZP_08539143.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333759906|gb|EGL37463.1| RNA methyltransferase, RsmD family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P+G+D RP + +K F+I+Q L LDL++G+G+
Sbjct: 1 MRVIAGTARRMNLKTPEGLDTRPTQDRIKETLFNIIQ------FDLTNKDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F + + + NL+ T F + S + + + + K
Sbjct: 55 LGIEALSRGAARAVFCDSARQAIL-CIEENLQKTHFKEQSLVLSGDYNGAI---NSLMRK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D F + + PPY E + ++ A V +D+ VVE L+ D
Sbjct: 111 DYHFGLVFMDPPYGRELAEKALIRLKDKAFVSQDTLFVVEAGLQEDF 157
>gi|417859038|ref|ZP_12504095.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
gi|338825042|gb|EGP59009.1| hypothetical protein Agau_C102063 [Agrobacterium tumefaciens F2]
Length = 185
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKTNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK-I 285
+ PFD + PPY E A + + ++E R D+ K +
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFAAAHGGGWLTPGALAILEE--RGDVAVNVDAAFKPL 168
Query: 286 KDRRFGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|314933320|ref|ZP_07840685.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
gi|313653470|gb|EFS17227.1| RNA methyltransferase, RsmD family [Staphylococcus caprae C87]
Length = 180
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMTQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D FD + + PPY + + +IS+ L+ ++ IV E+ D+
Sbjct: 109 DIQFDVIFLDPPYKKGLIDEAIERISEFNLLKENGIIVCEFSNHEDI 155
>gi|304404203|ref|ZP_07385865.1| methyltransferase [Paenibacillus curdlanolyticus YK9]
gi|304347181|gb|EFM13013.1| methyltransferase [Paenibacillus curdlanolyticus YK9]
Length = 201
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM+ RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVIAGSAKGRPLKAVPGMNTRPTTDKVKEAIFSMIGP------YFDGGLALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + V +++ N+ G + I+ ERA + + K
Sbjct: 55 LGIEALSRGIDKAIFVDREKISV-DIVRQNVGAAGVASQAEIY----RNDAERAVKALAK 109
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
PF + + PPY + + L+++++ L+ + +VVE+ + G + K
Sbjct: 110 RSQPFRLVFLDPPYRMTNMDELLSEMAGHGLLEAGAMVVVEHDASHRYPERFGGFEQRKY 169
Query: 288 RRFGRTHLAIYGPDWAQKKR 307
++G T + IY D+ ++R
Sbjct: 170 AKYGETAVTIY--DYEPEER 187
>gi|224531595|ref|ZP_03672227.1| putative methyltransferase [Borrelia valaisiana VS116]
gi|224511060|gb|EEF81466.1| putative methyltransferase [Borrelia valaisiana VS116]
Length = 189
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + KK+L PK VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 11 FMYVSSGKYKGKKILFPKTCSVRPVMSLVREAFFSIIFK------DIVDSKFLDVFAGTG 64
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+
Sbjct: 65 IMSVEALSRGASLAHLVECNRK-TRITLMKNFSF-----VEEFY----KFFFQRAEDFLS 114
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ I K ++ I++ P D+
Sbjct: 115 KKDLFYDFIYLDPPFNYKNKVNLLEIILKGKILNDKVNIIMHCPFSEDL 163
>gi|312898936|ref|ZP_07758324.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
gi|310620098|gb|EFQ03670.1| RNA methyltransferase, RsmD family [Megasphaera micronuciformis
F0359]
Length = 191
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ G AR + L SP+GM RP ++ + + F+IL ++ S R LD+++GTG
Sbjct: 7 MVRIISGSARGRILKSPQGMATRPTLDRTRESLFNILATS-----SFYEKRVLDIFAGTG 61
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG SE F+++ ++++ N E + + + + L+ E
Sbjct: 62 ALGLEAMSRGASEGVFIDVR---TASLIKKNAELCKVSERCKVLPLNHKNALQHLE---- 114
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FDY+ PPY ++ + L+ +++E+ R D++ + V +++
Sbjct: 115 -GQTFDYIFADPPYDKDFVNETISTVMNYGLLSDTGLLIMEHSAREDIMPSESYTV-VRE 172
Query: 288 RRFGR 292
+++G+
Sbjct: 173 KKYGK 177
>gi|226525311|gb|ACO70910.1| conserved hypothetical protein [uncultured Verrucomicrobia
bacterium]
Length = 187
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +P+ D+RP M+ V+GA FD L A P + R LDL++G+G+
Sbjct: 1 MRVIAGTAGGIPLHTPR-TDLRPTMDKVRGAIFDSLGDA--VPGA----RVLDLFAGSGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + V FVE D V+ + N E T ++ V +FL+R F
Sbjct: 54 LGLEALSRGAASVTFVEKDRAAVATIHR-NFEKTRL--SGTVQAADVFSFLDR---FAAP 107
Query: 229 DGPFDYMSVTPPYTAV----DY--EVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGC 281
+ FD + PPY+ D+ E+L + + AL + ++ P +L D C
Sbjct: 108 ES-FDLILADPPYSKAPGERDFAPELLNNEALRRALAPGGTLVLEHLPNSPLVLGDRWEC 166
Query: 282 LVKIKDRRFGRTHLAIYGP 300
L +D+ +G T +A P
Sbjct: 167 L---RDKSYGATAVAFLRP 182
>gi|253681992|ref|ZP_04862789.1| RNA methyltransferase, RsmD family [Clostridium botulinum D str.
1873]
gi|253561704|gb|EES91156.1| RNA methyltransferase, RsmD family [Clostridium botulinum D str.
1873]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + + ++ P V L N++ F + + + L+ F K
Sbjct: 55 LGLESVSRGAKQCYLIDRYP-VTFKRLQQNVKDLRFENECTCLNMDSYAALK---DFAKK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + V PPY + I++ L+ +D IV + ++ +V ++DR
Sbjct: 111 NKKFDLIFVDPPYAKEMIPPAIEIIAEEKLLHEDGLIVCKIDSSEEIYKGNDDIVLVQDR 170
Query: 289 RFGRTHLAIYG 299
R+G T + Y
Sbjct: 171 RYGNTTVCFYA 181
>gi|290892199|ref|ZP_06555195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404408490|ref|YP_006691205.1| methyltransferase [Listeria monocytogenes SLCC2376]
gi|290558322|gb|EFD91840.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404242639|emb|CBY64039.1| putative methyltransferase [Listeria monocytogenes SLCC2376]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDIVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M DT G KIK
Sbjct: 110 NEWKFDLIFLDPPYKKQQLEKLLGILEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|168188108|ref|ZP_02622743.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
gi|169294056|gb|EDS76189.1| putative methyltransferase [Clostridium botulinum C str. Eklund]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 22/197 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+A+ KK+L P+ M RP ++ VK F+I+Q+ + +D+++GTGS
Sbjct: 1 MRIIAGRAKGKKILPPEDMVTRPTLDRVKENIFNIIQN------RVVDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF------LDVSSIHTVRVETFLERA 222
+G+E++SRG E + V+ P V L N++ F L++ S + ++
Sbjct: 55 LGLESVSRGAKECYLVDRYP-VTFKRLQENVKSLRFENECICLNMDSYNALK-------- 105
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
F K FD + + PPY + + K L+ +D IV + ++ + +
Sbjct: 106 -SFANKKKIFDLIFIDPPYAKEMIPPAIDIVGKERLLYEDGLIVTKIDSSEEIFEGNDDI 164
Query: 283 VKIKDRRFGRTHLAIYG 299
V ++ R++G T + Y
Sbjct: 165 VLVQYRKYGNTTVCFYA 181
>gi|429765793|ref|ZP_19298073.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
gi|429185646|gb|EKY26620.1| RNA methyltransferase, RsmD family [Clostridium celatum DSM 1785]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR +KL+ P M+ RP ++ VK A F +Q+ L +D+++GTGS
Sbjct: 1 MRIIAGRARGRKLIPPATMETRPTLDRVKEAMFSTIQN------YLLDAVVIDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIP----NLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ V+ SN P N++ F D + + ++++ E
Sbjct: 55 LGLEAASRGSKEVYLVDK-----SNTTFPLLKKNVDDLKFNDCC--YPLNMDSY-EALRS 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
K FD + + PPY M I ++ ++ +D IV + ++ + +
Sbjct: 107 LANKGKVFDVIFIDPPYCKEMIPEAMKIIKENNMLKEDGIIVTKIDSIEEIYEGYEDIQL 166
Query: 285 IKDRRFGRTHLAIY 298
K +R+G T + Y
Sbjct: 167 NKSKRYGNTTVCYY 180
>gi|383455238|ref|YP_005369227.1| putative methyltransferase [Corallococcus coralloides DSM 2259]
gi|380735062|gb|AFE11064.1| putative methyltransferase [Corallococcus coralloides DSM 2259]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 109 LQVLGGKARRKKLLSPK--GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L LDLY+GT
Sbjct: 1 MRIVAGSAKGRALTGPKPSSGHIRPTADRVRETIFNMLGQ------FLDGQAVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + V+ D ++ + N + GF SI + + RA + +
Sbjct: 55 GALGLEALSRGAGRLVLVDQDREALA-LCRKNTDALGFGAQVSI----LAQPVARAVETL 109
Query: 227 GKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GK G F+ + PPY A E ++ + +ALV +VVE+ R D L
Sbjct: 110 GKQGEKFELVFADPPYAARVVETVLEAVVAAALVTPGGMVVVEHDKREAAPDAHAGLTLE 169
Query: 286 KDRRFGRTHLAIY 298
RRFG T ++ Y
Sbjct: 170 DQRRFGDTLVSFY 182
>gi|289435394|ref|YP_003465266.1| methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171638|emb|CBH28184.1| methyltransferase, putative [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 185
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ Q+ K ALV ++ I+ E+ M DT G VKIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAIMPDTVGNFVKIKA 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|52080104|ref|YP_078895.1| adenine-specific DNA methylase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319646121|ref|ZP_08000351.1| YlbH protein [Bacillus sp. BT1B_CT2]
gi|404488993|ref|YP_006713099.1| rRNA methyltransferase YlbH [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682042|ref|ZP_17656881.1| adenine-specific DNA methylase [Bacillus licheniformis WX-02]
gi|52003315|gb|AAU23257.1| Adenine-specific DNA methylase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52347980|gb|AAU40614.1| putative rRNA methyltransferase YlbH [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317391871|gb|EFV72668.1| YlbH protein [Bacillus sp. BT1B_CT2]
gi|383438816|gb|EID46591.1| adenine-specific DNA methylase [Bacillus licheniformis WX-02]
Length = 188
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDLY+G+G
Sbjct: 1 MRVISGTYKGRALKAVPGTSTRPTTDKVKESIFNMVGP------YFEGGTGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ G + ++ E L V +
Sbjct: 55 LGIEALSRGFDRFIFVDRDFKAIQTVK-GNLKTLGLEKCAEVYRNDAERAL---HALVKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY E L++ I ++ ++ + FIV E+ + D G L +
Sbjct: 111 GASFDAVFLDPPYREQKLEALLSIIDEADMLTERGFIVAEHAKEVMLPDAAGGLQLARQE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|414160417|ref|ZP_11416685.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878315|gb|EKS26200.1| RsmD family RNA methyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 183
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + K L S +G + RP + VK + F+ L G LDL++G+G+
Sbjct: 1 MRVISGQHKSKPLESLQGRNTRPTTDKVKESIFNTLHDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E+ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVK-VIKANLNSLDLMKQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY + +AQI + L+ K IV E+ + + +DT V IK
Sbjct: 109 DIQFDLIFLDPPYDKGLIDKALAQIEEFNLLKKSGIIVCEFNHKEN-IDTHSFEV-IKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|424880212|ref|ZP_18303844.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392516575|gb|EIW41307.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 186
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 21/199 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVG 227
VG+EA+SRGC FVE ++V L W +D +H R+ L R +G
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHGRTRI---LRRDATDLG 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC-GCLV 283
G PFD + PPY E MA ++ + + V+E R D++ + V
Sbjct: 109 SAGNLDPFDVLFADPPYGKGLGEKAMAAAAEGGWLRPGAIAVLEE--RADIVVSVHSSYV 166
Query: 284 KIKDRRFG--RTHLAIYGP 300
++ R FG R H Y P
Sbjct: 167 FLESRIFGDTRVHFFRYQP 185
>gi|306819896|ref|ZP_07453549.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304552053|gb|EFM39991.1| possible rRNA (guanine-N(2)-)-methyltransferase [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 196
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP M+ + + F++LQ + +LDL+SG+G+
Sbjct: 16 MRVIGGKYRGKKLIPPKNDDIRPTMDKARESLFNMLQ------YYIYESSFLDLFSGSGA 69
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS---IHTVRVETFLERAEQF 225
V IEAISRG V VE ++ I N LD S + V +FL+ +
Sbjct: 70 VSIEAISRGAKLVTLVEKSR---ESIKIINANLNLILDEKSKAELINSDVISFLQTTNE- 125
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
FD + PPY ++ IS L+ + +++E
Sbjct: 126 -----RFDIIFADPPYAYKKTNQIIELISTRKLLEDEGIMIIE 163
>gi|303232059|ref|ZP_07318762.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|401680132|ref|ZP_10812056.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
gi|302513165|gb|EFL55204.1| RNA methyltransferase, RsmD family [Veillonella atypica
ACS-049-V-Sch6]
gi|400219259|gb|EJO50130.1| RNA methyltransferase, RsmD family [Veillonella sp. ACP1]
Length = 183
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG A+ + +PKGMD RP ++ V+ + F++L G + R LDL+SGTG+
Sbjct: 1 MRIIGGTAKGHTIKAPKGMDTRPTLDRVRESIFNVLAHRG-----IFGTRVLDLFSGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG V+ + ++ N E LD I + L + + F+G
Sbjct: 56 VAIEALSRGAESAIAVD---YRTGKLIRENAEHCRVLDRIQI----IPKKLSQLKHFIG- 107
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FDY+ PPY E + ++ AL D +V+E+
Sbjct: 108 DQQFDYIFSDPPYENGFIQETIDFVVAHDAL-ADDGVLVLEH 148
>gi|383761399|ref|YP_005440381.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381667|dbj|BAL98483.1| hypothetical protein CLDAP_04440 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 218
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKA+ +KLL RP+ + K A F IL + + R LDL+ GTGS
Sbjct: 1 MRVIAGKAKGRKLLMTPSEGTRPITDRAKEALFSILGN------WIVDARVLDLFGGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + V FVE+ ++ + NL +++ T+L+R +
Sbjct: 55 VGIEALSRGAAWVDFVELSRKAIATIH-ANLRHCRLDAQAAVLRSDSFTYLQRYQ----- 108
Query: 229 DGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
P+D + V PP Y + + L ++ L+ +VV+ R D L +
Sbjct: 109 GDPYDLIFVAPPQYQGLWIKALQMIDARPELLAPHGNVVVQIHPREDAPVQLSHLEEYDR 168
Query: 288 RRFGRTHLAIYG 299
RR+G L YG
Sbjct: 169 RRYGSVLLIFYG 180
>gi|206971228|ref|ZP_03232179.1| RNA methyltransferase, RsmD family [Bacillus cereus AH1134]
gi|229180205|ref|ZP_04307549.1| Methyltransferase [Bacillus cereus 172560W]
gi|365159290|ref|ZP_09355471.1| RsmD family RNA methyltransferase [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412266|ref|ZP_17389386.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3O-2]
gi|423431949|ref|ZP_17408953.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4O-1]
gi|206734000|gb|EDZ51171.1| RNA methyltransferase, RsmD family [Bacillus cereus AH1134]
gi|228603414|gb|EEK60891.1| Methyltransferase [Bacillus cereus 172560W]
gi|363625288|gb|EHL76329.1| RsmD family RNA methyltransferase [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104334|gb|EJQ12311.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3O-2]
gi|401116705|gb|EJQ24543.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4O-1]
Length = 188
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG +V FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKVIFVDRDSKAIK-VIHQNLESCRVQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISVMDQHGLLHSDGLIMAEHGNDVVLPNSIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|337750102|ref|YP_004644264.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
gi|336301291|gb|AEI44394.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 194
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L S GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKSVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
++ FD + + PPY L+A++ + L+ + + +V+E+ G L +
Sbjct: 110 --REAQFDLVFLDPPYRLKLIPDLLAELQEGGLLAEGAKVVIEHDAEDVFEGDTGALEWL 167
Query: 286 KDRRFGRTHLAIY 298
+ +G T + I+
Sbjct: 168 RRAEYGDTAITIF 180
>gi|422419676|ref|ZP_16496631.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
gi|313632466|gb|EFR99485.1| RNA methyltransferase, RsmD family [Listeria seeligeri FSL N1-067]
Length = 189
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGP------FFDGDVVLDLFAGSGG 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + + NLE F D + ++ R E ERA + + K
Sbjct: 59 LGIEALSRGAERAVFIDQAQAAIKTIRL-NLESCHFTDRAEVY--RNEA--ERALKLLHK 113
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ Q+ K ALV ++ I+ E+ M DT G VKIK
Sbjct: 114 NEWKFDLVFLDPPYKKQQLEKLLLQLEKLALVSENGRIICEHDKEAVMPDTVGNFVKIKA 173
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 174 VSYGITVLSIF 184
>gi|422416583|ref|ZP_16493540.1| RNA methyltransferase, RsmD family [Listeria innocua FSL J1-023]
gi|313622959|gb|EFR93258.1| RNA methyltransferase, RsmD family [Listeria innocua FSL J1-023]
Length = 185
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDIVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCRFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ IV E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLITLEKLELVSENGRIVCEHDKEAVMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|229031561|ref|ZP_04187561.1| Methyltransferase [Bacillus cereus AH1271]
gi|228729850|gb|EEL80830.1| Methyltransferase [Bacillus cereus AH1271]
Length = 188
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEAISRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ +D I+ E+ + ++ G LVK++
Sbjct: 110 REISFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPESIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|405377184|ref|ZP_11031129.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
gi|397326281|gb|EJJ30601.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF142]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A +
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSI 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM-LDTCGCLVKI 285
G PFD + PPY E +A ++ + + V+E R D+ + V +
Sbjct: 111 GNLEPFDMLFADPPYGRGLGEKALAAAAEGGWLKPGAITVLEE--RADVAVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|385826087|ref|YP_005862429.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|417837761|ref|ZP_12483999.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
gi|329667531|gb|AEB93479.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|338761304|gb|EGP12573.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
johnsonii pf01]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLYTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+G FD + + PPY +M ++ ++ L+ + + +V E ++ + G + IK
Sbjct: 109 DEGKKFDLVFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSI-IK 167
Query: 287 DRRFGRTHLAIYGPD 301
D + GRT + +Y D
Sbjct: 168 DHQLGRTKVKVYERD 182
>gi|148241834|ref|YP_001226991.1| N6-adenine-specific methylase [Synechococcus sp. RCC307]
gi|147850144|emb|CAK27638.1| N6-adenine-specific methylase [Synechococcus sp. RCC307]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISRG 177
+KL SP+G++ RP +V+ A +IL A+ PG RWLDL SG+G++ EA+ +G
Sbjct: 9 QKLHSPEGLEARPTTGLVRQAVMNIL-------AAELPGCRWLDLCSGSGAMACEALLQG 61
Query: 178 CSEVHFVEMDPWVVS----NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233
V VE +P + + N W G S+ VE +L+R+ PFD
Sbjct: 62 ALWVQAVERNPKIAAAARRNFQGLGERWQG---TWSLEISTVERWLQRS-----CPEPFD 113
Query: 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293
+ PPY A Y ++ IS + +D +++E L G +IK+RR+GR+
Sbjct: 114 LIYADPPYAAGLYTPIVELISAGGWLKRDGQLLMECGRDAMPLPPKG-WKQIKERRYGRS 172
>gi|402490144|ref|ZP_10836933.1| methylase [Rhizobium sp. CCGE 510]
gi|401810170|gb|EJT02543.1| methylase [Rhizobium sp. CCGE 510]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G FD + PPY E MA + + + V+E R D++ + V +
Sbjct: 111 GNLEAFDVLFADPPYGKGLGEKAMAAAANGGWLRPGAIAVLEE--RADIVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
++R FG R H Y P
Sbjct: 169 ENRVFGDTRVHFFRYQP 185
>gi|291538909|emb|CBL12020.1| RNA methyltransferase, RsmD family [Roseburia intestinalis XB6B4]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 54 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 109
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
K FD + + PPY ++Y+VL + + S+L+ ++ I+VE L T
Sbjct: 110 K-YRFDIIFMDPPYKQELEYDVL-SYLKDSSLLKENGIIIVEASLDT 154
>gi|257869266|ref|ZP_05648919.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357050155|ref|ZP_09111364.1| RsmD family RNA methyltransferase [Enterococcus saccharolyticus
30_1]
gi|257803430|gb|EEV32252.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355382043|gb|EHG29151.1| RsmD family RNA methyltransferase [Enterococcus saccharolyticus
30_1]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R +KL S G + RP + VK + F+++ L G LDL++G+G
Sbjct: 1 MRVVAGDYRGRKLKSLSGDNTRPTTDKVKESIFNMI------GPYLDGGLVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG + H + +D + ++ N+ T + ++ + + L+ +FVG
Sbjct: 55 LAIEAVSRGAA--HAICVDRSYPAIKIIRENIGITKEPEKFTVLKMDAKQALK---EFVG 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FDY+ + PPY + + + Q+ ++ L+ + IV E D+ + G LV+ +
Sbjct: 110 TQQQFDYIFLDPPYAKQELVLQLEQMVQADLMATHAVIVCETAKEVDLPERIGTLVQSRR 169
Query: 288 RRFGRTHLAIY 298
+ +G T + IY
Sbjct: 170 QVYGITAVTIY 180
>gi|291557425|emb|CBL34542.1| RNA methyltransferase, RsmD family [Eubacterium siraeum V10Sc8a]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIVNMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK---DSFIVVEYPLRTDMLDTCGCLVKI 285
FD + PP YE + Q S AL K I+ E+ + + V
Sbjct: 110 --KFDIALLDPP-----YEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVIT 162
Query: 286 KDRRFGRTHLAIY 298
K +++G+T L Y
Sbjct: 163 KSKKYGKTALTFY 175
>gi|167750940|ref|ZP_02423067.1| hypothetical protein EUBSIR_01925 [Eubacterium siraeum DSM 15702]
gi|167656119|gb|EDS00249.1| RNA methyltransferase, RsmD family [Eubacterium siraeum DSM 15702]
Length = 184
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL++P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLIAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIINMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK---DSFIVVEYPLRTDMLDTCGCLVKI 285
FD + PP YE + Q S AL K I+ E+ + + V
Sbjct: 110 --KFDIALLDPP-----YEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVIT 162
Query: 286 KDRRFGRTHLAIY 298
K +++G+T L Y
Sbjct: 163 KSKKYGKTALTFY 175
>gi|42783025|ref|NP_980272.1| methyltransferase [Bacillus cereus ATCC 10987]
gi|42738952|gb|AAS42880.1| methyltransferase, putative [Bacillus cereus ATCC 10987]
Length = 188
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGVALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + V+ NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 111 EMSFDLILIDPPYKDQKIVSLISVMDQHGLLHNDGLIMAEHGNDVVLPESIGRLVKVRAE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 NYGITAISIY 180
>gi|419780565|ref|ZP_14306412.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK100]
gi|383185163|gb|EIC77662.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK100]
Length = 179
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 NGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|373116165|ref|ZP_09530321.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669629|gb|EHO34728.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 181
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV++ + V+ NL T + + FL G
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHTKLEEQGKVVQGDYLAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY A E + I+K ++ ++ IV E + + + K +D
Sbjct: 108 REKFDLVFLDPPYGAGMLEKALEAIAKIDIMTENGIIVCESAAESALPELAAPYAKGRDY 167
Query: 289 RFGRTHLAIY 298
R+G+ + +Y
Sbjct: 168 RYGKIKITLY 177
>gi|42522213|ref|NP_967593.1| hypothetical protein Bd0622 [Bdellovibrio bacteriovorus HD100]
gi|39574744|emb|CAE78586.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 199
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 11/195 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++ +RP + VK F+ LQ + R +DL+ GTG+
Sbjct: 1 MRIIAGKYRGHQLVAFDADHIRPTTDRVKETLFNKLQ------FDIDGARVVDLFCGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +P +++I + +S + + + + + G+
Sbjct: 55 LGIEALSRGAEFCTFVEKNP---KSLVITRKNFEKLRVPASDYKIVNMDVIAYLKSYEGE 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PF+ + PP+T +M S SA GK + + +E + M D G +V+ +
Sbjct: 112 --PFNIIFADPPFTEKMAHFVMEAASTSAAFGKTTLLAIESQAKERMEDRYGSVVRYSKK 169
Query: 289 RFGRTHLAIYGPDWA 303
+G L+++ + A
Sbjct: 170 EYGDKILSLFCHESA 184
>gi|386725726|ref|YP_006192052.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384092851|gb|AFH64287.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 196
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
++ FD + + PPY L+A++ + L+ + + +V+E+ G L +
Sbjct: 110 --REAQFDLVFLDPPYRLKLIPDLLAELQEGGLLAEGAKVVIEHDAEDAFEGDTGALEWL 167
Query: 286 KDRRFGRTHLAIY 298
+ +G T + I+
Sbjct: 168 RRAEYGDTAITIF 180
>gi|225874462|ref|YP_002755921.1| methyltransferase [Acidobacterium capsulatum ATCC 51196]
gi|225792429|gb|ACO32519.1| putative methyltransferase [Acidobacterium capsulatum ATCC 51196]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R + L +P G RP + ++ F++L + +LDLY+G+G+
Sbjct: 1 MRVIAGQYRSRPLTAPPGQGTRPTSDRLRETLFNVLAP------RIEGAIFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG E FV+ + NL L + S + + + + G+
Sbjct: 55 VGIEALSRGAREAIFVD-QAAPAQKAIRANLSA---LQIRSHYALEARSAAAVVGRLAGQ 110
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISK--SALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
P D + + PPY VD YE ++ + + L+ D+ +V E+ R + + G L+
Sbjct: 111 GSPVDIVFLDPPYDRVDEYEKVLTLLGGECAPLLAADAIVVAEHAKRQSLAEQYGKLICY 170
Query: 286 KDRRFGRTHLAIY 298
+ G L+ Y
Sbjct: 171 RTLVQGDAALSFY 183
>gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
Length = 190
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 27/196 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+A+ +++ P G VRP + +K A F+IL G +LDLY+GTG+
Sbjct: 1 MRIIGGQAKGRRIAVPPGYAVRPTSDRIKEALFNILGPVEGQ-------EFLDLYAGTGN 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG V FVE +V++ L NLE GF I + V E+A + +
Sbjct: 54 VGMEALSRGADVVVFVEKISVLVTS-LKRNLEQFGFQGRYRIFRMEV----EKAVAHLAE 108
Query: 229 DGP-FDYMSVTPPYTA--VDYEVLMAQISKSALVGKDSFIVVEYP------LRTDMLDTC 279
G FD + PPY VD + + + S L KD +V+++ ++ DM
Sbjct: 109 GGMCFDLIFADPPYRKGFVDRTIGLIKDYPSIL-RKDGMLVLQHAANETIEIKEDM---- 163
Query: 280 GCLVKIKDRRFGRTHL 295
L + RR+G T L
Sbjct: 164 -ALDVVDVRRYGDTLL 178
>gi|433449564|ref|ZP_20412428.1| putative N6-adenine-specific methylase [Weissella ceti NC36]
gi|429539078|gb|ELA07116.1| putative N6-adenine-specific methylase [Weissella ceti NC36]
Length = 183
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G ++L + G RP + VK + F+++ GR LDLY+G+G
Sbjct: 1 MRIVSGTFGGRRLKAVPGTKTRPTTDKVKESIFNMIGP------YFDGGRSLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE +SRG V+ + + N+E T D ++ R + +ER +
Sbjct: 55 LSIEGVSRGIDHAVLVDRQFDAIKTIK-ENIEVTKAADQFTVIKSRADLAIER----LSG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY +A++++ L+ +D+ IV E D+ DT +IK +
Sbjct: 110 GEPFDLLYFDPPYAKQTIADDVAKLAEYGLITEDAIIVAETDQVADLPDTLSGFTQIKQK 169
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 170 DYGITVITIY 179
>gi|419782889|ref|ZP_14308686.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK610]
gi|383182815|gb|EIC75364.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK610]
Length = 179
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
+GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 NGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|379722944|ref|YP_005315075.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
gi|378571616|gb|AFC31926.1| RsmD family RNA methyltransferase [Paenibacillus mucilaginosus
3016]
Length = 194
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ GR LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFDGGRVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+ IEA+SRG + D V + NL+ GF D + ++ +R L R
Sbjct: 55 LSIEALSRGMEAAVLTDTDKKAVETIH-QNLKAAGFTDRAEVYRNDALRALRALSR---- 109
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
++ FD + + PPY L+A++ + L+ + + +V+E+ G L +
Sbjct: 110 --REAQFDLVFLDPPYRLKLIPDLLAELQEGGLLAEGAKVVIEHDAEDAFEGDTGALEWL 167
Query: 286 KDRRFGRTHLAIY 298
+ +G T + I+
Sbjct: 168 RRAEYGDTAITIF 180
>gi|310828884|ref|YP_003961241.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308740618|gb|ADO38278.1| hypothetical protein ELI_3316 [Eubacterium limosum KIST612]
Length = 189
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 99/193 (51%), Gaps = 14/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G+ R KL+S G +RP + VKGA F+ +Q LR + ++DL+ G+G
Sbjct: 1 MRVIAGEKRGTKLVSIDGDFIRPTTDKVKGAVFNSVQ------VELREAQVFVDLFGGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + +F ++ + ++ NL+ TGF + + E + F+
Sbjct: 55 AMGIEALSRGIPQAYFFDISRNSIG-IIKKNLKLTGFESKAIVKNCSAEEGI----GFLC 109
Query: 228 KDG-PFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K+ D + + PPY + ++ +I + ++ D I++E+ M K
Sbjct: 110 KNSVKCDMIYMDPPYKDGISMISIVEKICEKKILNSDGIIMMEHEKSVIMPIAIKSFAKY 169
Query: 286 KDRRFGRTHLAIY 298
K++++G T ++ Y
Sbjct: 170 KEKKYGTTLVSFY 182
>gi|374851405|dbj|BAL54366.1| N6-adenine-specific methylase [uncultured Chloroflexi bacterium]
Length = 186
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +KL G RP+ + VK A F+IL GG + W D+++GTG
Sbjct: 1 MRVISGSAKGRKLKPVPGDTTRPITDRVKEALFNIL---GG---DVIGSTWWDVFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG F + P + + NLE TG + + + R + F A
Sbjct: 55 VGIEALSRGALFCRFTDAHPLAIRTIR-ANLEATGLAERAEVR--RGDAF---ALLHAPA 108
Query: 229 DGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
D FDY+ + PP Y + + L+A + + + + ++++V+ R + L
Sbjct: 109 DRTFDYLYIAPPQYHELWSKALLALEANPSWLSESAWVIVQIHPREATPLSLQQLSLFDQ 168
Query: 288 RRFGRTHLAIY 298
RR+G T L +
Sbjct: 169 RRYGSTLLLFF 179
>gi|42518924|ref|NP_964854.1| hypothetical protein LJ0998 [Lactobacillus johnsonii NCC 533]
gi|41583210|gb|AAS08820.1| hypothetical protein LJ_0998 [Lactobacillus johnsonii NCC 533]
Length = 182
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+G FD + + PPY +M ++ ++ L+ + + +V E ++ + G + IK
Sbjct: 109 DEGKKFDLIFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSI-IK 167
Query: 287 DRRFGRTHLAIYGPD 301
D + GRT + +Y D
Sbjct: 168 DHQLGRTKVKVYERD 182
>gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 179
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWTDRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F V PPY L A A G+ V E+ R +D G L
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGR---AVAEHDARRPPVDRIGPLSLADR 165
Query: 288 RRFGRTHLAIYGPD 301
R +G T ++IY D
Sbjct: 166 RTYGGTGISIYQRD 179
>gi|410727104|ref|ZP_11365327.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
gi|410599439|gb|EKQ53992.1| RNA methyltransferase, RsmD family [Clostridium sp. Maddingley
MBC34-26]
Length = 185
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q ++ +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIQEAVVVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E+ SRG SEV+ + V +L N+E F D + ++ + E ++ K
Sbjct: 55 LGLESASRGASEVYLFDKSS-VTFPLLKQNVENLKFQDFC--FPMNIDAY-EGLKKLANK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M +S + ++ +D IV + + + + K +
Sbjct: 111 GKKFDIIFIDPPYCKEMIPEAMKIVSDNEMLKEDGIIVTKIDTIEAIYEGYKNIKLTKSK 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCYY 180
>gi|164688646|ref|ZP_02212674.1| hypothetical protein CLOBAR_02291 [Clostridium bartlettii DSM
16795]
gi|164603059|gb|EDQ96524.1| RNA methyltransferase, RsmD family [Clostridium bartlettii DSM
16795]
Length = 165
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GKAR KL +PK DVRP + VK + F+I+ + LDL++GTGS
Sbjct: 1 MRVISGKARGLKLNTPKNEDVRPTTDRVKESLFNIIN------FYVMDNNILDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFV----EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+GIE +SRG ++ FV E V SN+ +E ++ + T + A
Sbjct: 55 LGIECLSRGANKCVFVDKSKESMSIVKSNIKKARVEN---------ESITLNTDFKSAIL 105
Query: 225 FVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+G+ G F + + PPY + ++ + ++ L+ +D IVVE+ + D G
Sbjct: 106 SLGRQGDKFTIIFMDPPYYKNMFIDALSSVDENNLLEEDGIIVVEHDTKDSFPDNVG 162
>gi|402308991|ref|ZP_10827987.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
gi|400373110|gb|EJP26044.1| RNA methyltransferase, RsmD family [Eubacterium sp. AS15]
Length = 181
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R KKL+ PK D+RP + + + F++LQ + +LDL+SG+G+
Sbjct: 1 MRVIGGKYRGKKLIPPKNDDIRPTTDKARESLFNMLQ------YYIYESSFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAEQF 225
V IEAISRG V VE ++ I N D S +R V +FL+ ++
Sbjct: 55 VSIEAISRGAKLVTLVEKSR---ESIKIINANLNLISDEKSKADLRNGDVISFLQTTKE- 110
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
FD + PPY ++ IS L+ D +++E
Sbjct: 111 -----KFDIIFADPPYAYEKTNQIIELISTRKLLEDDGIMIIE 148
>gi|291536223|emb|CBL09335.1| RNA methyltransferase, RsmD family [Roseburia intestinalis M50/1]
Length = 188
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 113
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
K FD + + PPY ++Y+VL + + S+L+ ++ I+VE L T
Sbjct: 114 K-YRFDIIFMDPPYKQELEYDVL-SYLKDSSLLKENGIIIVEASLDT 158
>gi|402555945|ref|YP_006597216.1| methyltransferase [Bacillus cereus FRI-35]
gi|401797155|gb|AFQ11014.1| methyltransferase [Bacillus cereus FRI-35]
Length = 188
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGVALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + V+ NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 111 EMSFDLILIDPPYKDQKIVSLISVMDQHGLLHNDGLIMAEHGNDIVLPESIGRLVKVRAE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 NYGITAISIY 180
>gi|220929300|ref|YP_002506209.1| methyltransferase [Clostridium cellulolyticum H10]
gi|219999628|gb|ACL76229.1| methyltransferase [Clostridium cellulolyticum H10]
Length = 187
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSG 165
+L+V+ G + KL + +GM+ RP + VK F+I+ A PG LDL++G
Sbjct: 3 NILRVISGSVKGLKLFTLEGMNTRPTTDRVKENLFNII-------APYIPGSNVLDLFAG 55
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TGS+GIEA+SRG + F + + + +++ NL+ T + S + + L++ Q
Sbjct: 56 TGSLGIEALSRGANSAVFCDQNKQSI-DIIKKNLQHTKLTEKSEVFLGEAQLMLKKLSQL 114
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
K FD + + PPY ++ ++ ++ + I VE + + L
Sbjct: 115 SKK---FDIIFLDPPYLKKIVPGILQKLEHYGVLDEKFIISVETDIEDQLPQETETLCVS 171
Query: 286 KDRRFGRTHLAIY 298
+ +G+T L Y
Sbjct: 172 RQLIYGKTKLTFY 184
>gi|424898491|ref|ZP_18322065.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393182718|gb|EJC82757.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 186
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E MA + + + V+E R D++ + V +
Sbjct: 111 GNLEPFDVLFADPPYGKGLGEKAMAAAALGGWLRPGAMAVLEE--RGDIVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
++R FG R H Y P
Sbjct: 169 ENRIFGDTRVHFFRYQP 185
>gi|116629813|ref|YP_814985.1| N6-adenine-specific methylase [Lactobacillus gasseri ATCC 33323]
gi|282851681|ref|ZP_06261046.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri 224-1]
gi|420148384|ref|ZP_14655652.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri CECT
5714]
gi|116095395|gb|ABJ60547.1| N6-adenine-specific methylase [Lactobacillus gasseri ATCC 33323]
gi|282557649|gb|EFB63246.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri 224-1]
gi|398399936|gb|EJN53532.1| RNA methyltransferase, RsmD family [Lactobacillus gasseri CECT
5714]
Length = 182
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD---VSSIHTVRVETFLERAEQ 224
++GIEA+SRG V++ ++ N+E T D V R L E+
Sbjct: 54 ALGIEAVSRGYDSAVLVDISGQACQ-IIRKNVELTKEEDRFRVLKCSDNRAIKILNEEEK 112
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PPY +M ++ K+ L+ +++ +V E ++ + G +
Sbjct: 113 ------KFDLIFLDPPYAKQKIVKIMTKLLKNNLLSENALVVAETDEHDELPEVSGFSI- 165
Query: 285 IKDRRFGRTHLAIY 298
IKD + GRT + +Y
Sbjct: 166 IKDHQLGRTKVKVY 179
>gi|241203271|ref|YP_002974367.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857161|gb|ACS54828.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 186
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E MA + + + V+E R D++ + V +
Sbjct: 111 GNLDPFDVLFADPPYGKGLGEKAMAAAVEGGWLRPGAIAVLEE--RADIVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|223043823|ref|ZP_03613865.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|417907606|ref|ZP_12551377.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
gi|222442727|gb|EEE48830.1| RNA methyltransferase, RsmD family [Staphylococcus capitis SK14]
gi|341595635|gb|EGS38278.1| RNA methyltransferase, RsmD family [Staphylococcus capitis VCU116]
Length = 180
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMPQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D FD + + PPY + + +IS+ L+ ++ IV E+ D+
Sbjct: 109 DIQFDVIFLDPPYKKGLIDEAIERISEFNLLKENGIIVCEFSNHEDI 155
>gi|229192138|ref|ZP_04319106.1| Methyltransferase [Bacillus cereus ATCC 10876]
gi|228591345|gb|EEK49196.1| Methyltransferase [Bacillus cereus ATCC 10876]
Length = 188
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG +V FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKVIFVDRDSKAIK-VIHQNLESCRVQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ +D I+ E+ + ++ G LVK++
Sbjct: 110 REIAFDLILIDPPYKDQKIVSLISVMDQHGLLHRDGLIMSEHGNDVVLPESIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|227889783|ref|ZP_04007588.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
gi|227849647|gb|EEJ59733.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
johnsonii ATCC 33200]
Length = 182
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VKG+ F+ L Q G G+ LDLY+G+G
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQFFDG-------GQVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG E V++ V+ N+E T + ++ RA + +
Sbjct: 54 ALGIEAVSRGYDEAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQ 108
Query: 228 KDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+G FD + + PPY +M ++ ++ L+ + + +V E ++ + G + IK
Sbjct: 109 DEGKKFDLVFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSI-IK 167
Query: 287 DRRFGRTHLAIYGPD 301
D + GRT + +Y D
Sbjct: 168 DHQLGRTKVKVYERD 182
>gi|395771779|ref|ZP_10452294.1| RNA methylase [Streptomyces acidiscabies 84-104]
Length = 199
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + A +S G +SL R LDLY+G+G
Sbjct: 1 MTRVIAGEAGGRRLAVPPGTGTRPTSDRAREALMSTWESLLG--SSLTGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE DP V + +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGAAHTLLVEADPKAVRTIR---------ENVKSLALPGAEVRQGKAEQIIQ 109
Query: 228 K--DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
P+D + PPY D+++ ++ + + D+ + VE R
Sbjct: 110 APPTTPYDIAFLDPPYAVTDHDLGEILLTLRTEGWLTPDAIVTVERSTRGGEFPWPEGFA 169
Query: 284 KIKDRRFG 291
+K RR+G
Sbjct: 170 PLKARRYG 177
>gi|304439764|ref|ZP_07399662.1| RsmD family RNA methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371751|gb|EFM25359.1| RsmD family RNA methyltransferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 186
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 17/198 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ +L+S +GMDVRP + VK + F+I+ LD++ G+G
Sbjct: 1 MRVISGIAKGMRLVSVEGMDVRPTADRVKESVFNIIGQY------FHDKEALDIFCGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
GIE +SRG FV+ + V NL+ T + + + + + +L+ E
Sbjct: 55 NGIEFLSRGAKSCVFVDTCSESLK-VTRENLKHTKLNEGAKVINMDYKKYLKTTED---- 109
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ + Y +A I + L+ KD +VVEY + +D G V +K+
Sbjct: 110 --RFDIIYMDPPFDELQKYRHTLAIILERNLLKKDGLLVVEYRYGS-RIDFTGYEV-LKE 165
Query: 288 RRFGRTHLAIYG-PDWAQ 304
+++G T +A+ G PD +
Sbjct: 166 KKYGSTSIAVLGVPDESN 183
>gi|89898678|ref|YP_515788.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89332050|dbj|BAE81643.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 187
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 24/159 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + +RP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKTFSNSSIRPTCGVVKEAVFNI------CSAYVENALFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
+G EA+SRG S V FV+ V S ++ P+L T I V + ++R
Sbjct: 55 IGFEALSRGASSVTFVDSSAQAVRLIRANSQLINPDLPIT-------IMKHEVRSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK 261
+ KD FD + + PPY D +A + + +VGK
Sbjct: 108 AK---KDMSFDLIYLDPPYDLEDR--YLAAVLRDIVVGK 141
>gi|239636372|ref|ZP_04677374.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
gi|239597727|gb|EEQ80222.1| RNA methyltransferase, RsmD family [Staphylococcus warneri L37603]
Length = 180
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKSNLKQLDLMSQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FDY+ + PPY + + I++ L+ ++ I+ E+
Sbjct: 109 DIQFDYIFLDPPYKKGLIDEALKSIAEFNLLKENGIIICEF 149
>gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 179
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L PKG RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGTARGRRLAVPKGQGTRPTSDKVRGAVFNLLGQ------FFDGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + +L N E G+ D + RV L R
Sbjct: 55 ALALEALSRGCARAVCVEAD-RPTAELLRRNAETCGWADRVEVVRGRVPEALARLAP--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F V PPY L A A G+ V E+ R +D G L
Sbjct: 111 --GRFALAFVDPPYAEGPDAALAALGPLLAPGGR---AVAEHDARRPPVDRIGPLSLADR 165
Query: 288 RRFGRTHLAIYGPD 301
R +G T ++IY D
Sbjct: 166 RTYGGTGISIYQRD 179
>gi|116873489|ref|YP_850270.1| methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742367|emb|CAK21491.1| methyltransferase, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 185
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDTVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + NLE F D + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHFTDRAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ I+ E+ M +T G KI+
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLITLEKLQLVSENGRIICEHDKEAVMPETIGRFEKIRS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|423098952|ref|ZP_17086660.1| RNA methyltransferase, RsmD family [Listeria innocua ATCC 33091]
gi|370794779|gb|EHN62542.1| RNA methyltransferase, RsmD family [Listeria innocua ATCC 33091]
Length = 185
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G + RP + VK + F I+ LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII------GPFFDGDIVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++ + + N+E F + + ++ E RA + + K
Sbjct: 55 LGIEALSRGAERAVFIDQATLAIKTIR-QNIEGCHFTERAEVYRNDAE----RALKLLHK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY E L+ + K LV ++ IV E+ M DT G KIK
Sbjct: 110 NEWKFDLVFLDPPYKKQQLEKLLITLEKLELVSENGRIVCEHDKEAVMPDTIGKFEKIKS 169
Query: 288 RRFGRTHLAIY 298
+G T L+I+
Sbjct: 170 VSYGITVLSIF 180
>gi|399890210|ref|ZP_10776087.1| methyltransferase [Clostridium arbusti SL206]
Length = 185
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+G+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGIGTRPTLDRIKESMFSIIQN------EVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG + + V+ P + +L N+E F + + L + + K
Sbjct: 55 LGLEAASRGAKQCYLVDKGP-ITFPILEKNVENLKFQQICKCLNMDSYNALNK----LAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
DG F + V PPY + I + L+ ++ IV + ++ + I
Sbjct: 110 DGIVFGLIFVDPPYMKNMIPKAIEIIDEKGLLNRNGLIVTKIDSSEEIYGGNEKINLIDS 169
Query: 288 RRFGRTHLAIY 298
R++G T + Y
Sbjct: 170 RKYGNTTVCFY 180
>gi|251797490|ref|YP_003012221.1| methyltransferase [Paenibacillus sp. JDR-2]
gi|247545116|gb|ACT02135.1| methyltransferase [Paenibacillus sp. JDR-2]
Length = 196
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM+ RP + VK A F ++ G LDL++GTG
Sbjct: 1 MRVIAGAAKGRTLKAVPGMNTRPTTDKVKEAIFSMIGP------FFDGGLALDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG F++ + + +++ N E G + I+ +RA + + K
Sbjct: 55 LGIEAWSRGIERTIFIDREKISI-DIIKLNTEAAGMGRHAEIY----RNDADRALKLLEK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + LMA +++ +L+ + IVVE+ + D + ++
Sbjct: 110 RGIAFSIVFLDPPYRLTHMDELMADLAQRSLLEDGATIVVEHDAGHEYPDEMEHFILVRK 169
Query: 288 RRFGRTHLAIY 298
+++G T + IY
Sbjct: 170 QKYGDTAVTIY 180
>gi|123966382|ref|YP_001011463.1| N6-adenine-specific methylase [Prochlorococcus marinus str. MIT
9515]
gi|123200748|gb|ABM72356.1| N6-adenine-specific methylase [Prochlorococcus marinus str. MIT
9515]
Length = 195
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ KL SP + RP +V+ A F+IL++ ++ WLDL+SGTGS
Sbjct: 5 LRLIGGR----KLESPNTNESRPTTLMVREAIFNILKN------TVENSNWLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFL----ERA 222
+ EA + G ++ VE + +S + + NL +D + I + + + +
Sbjct: 55 ISCEAYNHGAKKIIAVEKNK-NLSKICLKNLYSLQNMDNRKNDIEVICKDVLIWTKPSAS 113
Query: 223 EQFVGKDG----PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT 278
+ + K+ FD++ + PPY A +E+++ QI + KD+ ++ E+ L D+
Sbjct: 114 KNYSTKNNLNKIKFDFIYLDPPYRADYHELVLNQIFNCNFIRKDTIVICEHSL--DLEIK 171
Query: 279 CGCLVKIKD-RRFGRTHLA 296
L +I D R +G++ L
Sbjct: 172 KNILWEIYDVRTYGQSKLT 190
>gi|239991054|ref|ZP_04711718.1| putative RNA methylase [Streptomyces roseosporus NRRL 11379]
gi|291448056|ref|ZP_06587446.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
gi|291351003|gb|EFE77907.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
Length = 194
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLG---TLEGTRVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ E +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGAEVRAGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + +G+D+ + VE R
Sbjct: 109 GPAPSDPYDIVFLDPPYAVTDDDLREILLTLRAQGWIGEDALVTVERSTRGGEFGWPAGF 168
Query: 283 VKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 169 EPLRSRRYGEGTL 181
>gi|365157031|ref|ZP_09353313.1| RsmD family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
gi|363626057|gb|EHL77064.1| RsmD family RNA methyltransferase [Bacillus smithii 7_3_47FAA]
Length = 190
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K+L + G RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGICKGKQLKAVPGKSTRPTTDKVKEAIFNMV------GPYFSGGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ D + + N+++ F + S ++ R ++F RA Q + K
Sbjct: 55 LGIEALSRGFEKMIFVDKDSKAIQTIH-ANIDFCSFREQSEVY--RNDSF--RALQVLKK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY E L++ I + + ++ FIV E+ + G L + K
Sbjct: 110 RGIRFDGVFLDPPYRKQKLEELLS-IFNNGYIKENGFIVCEHSKEVTLPARSGNLRQWKH 168
Query: 288 RRFGRTHLAIY 298
+G + IY
Sbjct: 169 ETYGIIGVTIY 179
>gi|418087649|ref|ZP_12724816.1| methyltransferase [Streptococcus pneumoniae GA47033]
gi|418103649|ref|ZP_12740720.1| methyltransferase [Streptococcus pneumoniae NP070]
gi|418147212|ref|ZP_12783986.1| methylase, putative [Streptococcus pneumoniae GA13637]
gi|419476292|ref|ZP_14016126.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14688]
gi|419487436|ref|ZP_14027197.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44128]
gi|421209723|ref|ZP_15666734.1| hypothetical protein AMCSP11_001932 [Streptococcus pneumoniae
2070005]
gi|421218685|ref|ZP_15675574.1| hypothetical protein AMCSP13_002349 [Streptococcus pneumoniae
2070335]
gi|421225801|ref|ZP_15682537.1| hypothetical protein AMCSP06_001953 [Streptococcus pneumoniae
2070768]
gi|421241419|ref|ZP_15697963.1| hypothetical protein AMCSP17_001839 [Streptococcus pneumoniae
2080913]
gi|353757050|gb|EHD37647.1| methyltransferase [Streptococcus pneumoniae GA47033]
gi|353774428|gb|EHD54919.1| methyltransferase [Streptococcus pneumoniae NP070]
gi|353811140|gb|EHD91385.1| methylase, putative [Streptococcus pneumoniae GA13637]
gi|379557872|gb|EHZ22910.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14688]
gi|379585072|gb|EHZ49933.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44128]
gi|395572378|gb|EJG32975.1| hypothetical protein AMCSP11_001932 [Streptococcus pneumoniae
2070005]
gi|395582001|gb|EJG42465.1| hypothetical protein AMCSP13_002349 [Streptococcus pneumoniae
2070335]
gi|395588494|gb|EJG48823.1| hypothetical protein AMCSP06_001953 [Streptococcus pneumoniae
2070768]
gi|395606697|gb|EJG66800.1| hypothetical protein AMCSP17_001839 [Streptococcus pneumoniae
2080913]
Length = 179
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R+ L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGRRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPYT E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYTK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|295696053|ref|YP_003589291.1| methyltransferase [Kyrpidia tusciae DSM 2912]
gi|295411655|gb|ADG06147.1| methyltransferase [Kyrpidia tusciae DSM 2912]
Length = 195
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L G RP + VK A F IL GG SL G LD ++GTG+
Sbjct: 1 MRVVAGELGGRPLAGVPGRGTRPTADRVKEAMFSIL---GG---SLDGGWALDAFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-- 226
+GIEA+SRG F+E P VL NL+ G + + V L R +
Sbjct: 55 LGIEALSRGAERAVFIEKSP-AALRVLRGNLKRLGLDARCRVLPMDVRVALHRLNALIPV 113
Query: 227 ----GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
G+ F ++ PPY L+ ++ + LV + VVE +T + D G
Sbjct: 114 AGVSGQAMAFRWVFFDPPYKMAGAVDLLGELDRLGLVEAGAVAVVETSAQTAVPDKIGMW 173
Query: 283 VKIKDRRFGRTHLAIY 298
+ K +G T L Y
Sbjct: 174 IHWKRSTYGDTALTFY 189
>gi|182417257|ref|ZP_02948610.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237668100|ref|ZP_04528084.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378903|gb|EDT76416.1| putative methyltransferase [Clostridium butyricum 5521]
gi|237656448|gb|EEP54004.1| RNA methyltransferase, RsmD family [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 185
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL+ P M+ RP ++ VK A F +Q + G +D+++GTGS
Sbjct: 1 MRIIAGKARGHKLIPPATMETRPTLDRVKEAMFSSIQ------LYIPEGTIVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG SEV+ + + +L N++ F D+ ++ + ++ + K
Sbjct: 55 LGLEAASRGASEVYLFD-KSEITFPLLQENVKNLKFEDIC--FPIKTDAYI-GLKNLAQK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F+ + + PPY M + ++ L+ +D IV + ++ + +K +
Sbjct: 111 GKQFNIIFIDPPYCKEMIPEAMKIVKENNLLKEDGIIVTKIDTIEEIYSGYDNIKLLKSK 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCYY 180
>gi|258514453|ref|YP_003190675.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
gi|257778158|gb|ACV62052.1| methyltransferase [Desulfotomaculum acetoxidans DSM 771]
Length = 183
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L SP + +RP + VK A F+I++ P S+ +LDL++GTG+
Sbjct: 1 MRVISGSVKGRRLKSPGNLKIRPTADRVKEALFNIIRDR--VPGSI----FLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V FVE + ++ NL TGF D +++ + + K
Sbjct: 55 IGIEALSRGASMVVFVEQH-YKTIQLIKENLGLTGFNDYATLLKGNIPSCFSSLGAMSYK 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY ++ I + L+ +VE D+ L I+
Sbjct: 114 ---YDLIFMDPPYLKDLINCALSGIDEYDLLLPGGQAIVECSKLEDLPLEVNKLRLIRQE 170
Query: 289 RFGRTHLAIY 298
++G T L Y
Sbjct: 171 KYGDTILGFY 180
>gi|390454119|ref|ZP_10239647.1| N6-adenine-specific methylase [Paenibacillus peoriae KCTC 3763]
Length = 213
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + G RP + VK A F ++ G LDL++G+G
Sbjct: 1 MRVVSGSAKGRPLKAVPGTGTRPTTDKVKEALFSMIGP------YFDGGVALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQF 225
+GIEA+SRG + F++M+ + V+ NL TG + E F RA +
Sbjct: 55 LGIEALSRGMDKAVFIDMESKSI-EVIKENLRKTGL-------EGQAEVFRNDAGRALKA 106
Query: 226 VGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K G FD + + PPY + LM+++++ L+ ++ IV+EY + ++ G +
Sbjct: 107 LAKRGALFDAVFLDPPYRLKHGDELMSRMAELDLLRSEAIIVLEYESGHEYPESFGPFEQ 166
Query: 285 IKDRRFGRTHLAIY 298
+K +G T ++IY
Sbjct: 167 VKKAVYGETAISIY 180
>gi|419778115|ref|ZP_14304017.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK10]
gi|383187868|gb|EIC80312.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK10]
Length = 179
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSQEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|315283097|ref|ZP_07871363.1| RNA methyltransferase, RsmD family [Listeria marthii FSL S4-120]
gi|313613256|gb|EFR87134.1| RNA methyltransferase, RsmD family [Listeria marthii FSL S4-120]
Length = 189
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ + L + G + RP + VK + F I+ G LDL++G+G
Sbjct: 5 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII-------GPFFDGDIVLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQ 224
+GIEA+SRG F++ + + NLE F T R E + ERA +
Sbjct: 58 GLGIEALSRGAERAVFIDQATLAIKTIR-QNLEGCHF-------TERAEVYRNDAERALK 109
Query: 225 FVGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ K+ FD + + PPY E LM + K LV + I+ E+ M DT G
Sbjct: 110 LLHKNEWKFDLVFLDPPYKKQQLEKLMIALEKLELVSDQARIICEHDKEAIMPDTIGKFE 169
Query: 284 KIKDRRFGRTHLAIY 298
KI+ +G T L+I+
Sbjct: 170 KIRSVSYGITVLSIF 184
>gi|295425145|ref|ZP_06817850.1| probable methyltransferase [Lactobacillus amylolyticus DSM 11664]
gi|295065204|gb|EFG56107.1| probable methyltransferase [Lactobacillus amylolyticus DSM 11664]
Length = 182
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSRKTRPTSDKVKESLFNSLGQFFNG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG S V+++ + ++ N+ T D S+ + + L++ F
Sbjct: 54 ALGIEAVSRGYSHATLVDIN-YAAVEIIKKNVALTKEEDKFSVFKMPSKVALKK---FAE 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PPY + M ++ + L+ + + +V E +T + + G + IKD
Sbjct: 110 SGKKFDLVFLDPPYAKQKMKSDMIEMLNNNLLNERAIVVAETDDQTILPEIAGFTL-IKD 168
Query: 288 RRFGRTHLAIYGPD 301
G+T + IY D
Sbjct: 169 HHLGKTIVRIYRKD 182
>gi|427712687|ref|YP_007061311.1| RsmD family RNA methyltransferase [Synechococcus sp. PCC 6312]
gi|427376816|gb|AFY60768.1| RNA methyltransferase, RsmD family [Synechococcus sp. PCC 6312]
Length = 191
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++KL +P G RP V+ A F+I Q S GC RWLDL +G+G++G EA+ R
Sbjct: 8 QRKLATPPGNQTRPTTAKVRQALFNIWQNSVSGC-------RWLDLCAGSGAMGAEALVR 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236
G S V +E +P + W V ++ Q + PFD++
Sbjct: 61 GASVVVGIEQNPQAYRLI---QHNWQSLAQAEQQFQVIRADVIQALPQL--QTAPFDHIY 115
Query: 237 VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLA 296
PPY + Y+ ++ I+ L+ + VE RT L L + + +G T L
Sbjct: 116 FDPPYDSNLYQPVLKLIAALNLLAPTGAMAVE--CRTHQLPELTGLGPYRQKVYGSTTLI 173
Query: 297 I 297
I
Sbjct: 174 I 174
>gi|317132996|ref|YP_004092310.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
gi|315470975|gb|ADU27579.1| methyltransferase [Ethanoligenens harbinense YUAN-3]
Length = 185
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L + G++ RP E VK A F +Q L R LDL++G+G
Sbjct: 1 MRVITGSARGARLETLSGLETRPTAERVKEALFSSIQF------ELEGRRVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SRG + FV+ V ++ NL T + + + E FL RA +
Sbjct: 55 LGIESLSRGAALAVFVDQSADAV-KIIKANLTHTRLFEKARVLETEAELFLARAPE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY E L+ +A + +V E M + G L ++ +
Sbjct: 110 --TYDVIFLDPPYHHGFLEKLLPH--AAAHLSAHGVLVAEGAKDDSMPEAVGDLRLVQKK 165
Query: 289 RFGRTHLAIY 298
+G+T + Y
Sbjct: 166 SYGKTAIGFY 175
>gi|190890545|ref|YP_001977087.1| methylase [Rhizobium etli CIAT 652]
gi|190695824|gb|ACE89909.1| putative methylase protein [Rhizobium etli CIAT 652]
Length = 186
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G FD + PPY E MA ++ + + V+E R D++ + V +
Sbjct: 111 GNLEAFDVLFADPPYGKGLGEKAMAAAAQGGWLRPGAIAVLEE--RADVVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
+ R FG R H Y P
Sbjct: 169 ESRIFGDTRVHFFRYQP 185
>gi|16801225|ref|NP_471493.1| hypothetical protein lin2159 [Listeria innocua Clip11262]
gi|422413591|ref|ZP_16490550.1| RNA methyltransferase, RsmD family [Listeria innocua FSL S4-378]
gi|16414673|emb|CAC97389.1| lin2159 [Listeria innocua Clip11262]
gi|313617949|gb|EFR90118.1| RNA methyltransferase, RsmD family [Listeria innocua FSL S4-378]
Length = 185
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ + L + G + RP + VK + F I+ G LDL++G+G
Sbjct: 1 MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSII-------GPFFDGDIVLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQ 224
+GIEA+SRG F++ + + N+E F T R E + ERA +
Sbjct: 54 GLGIEALSRGAERAVFIDQATLAIKTIR-QNIEGCHF-------TERAEVYRNDAERALK 105
Query: 225 FVGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ K+ FD + + PPY E L+ + K LV ++ IV E+ M DT G
Sbjct: 106 LLHKNEWKFDLVFLDPPYKKQQLEKLLIALEKLELVSENGRIVCEHDKEAVMPDTIGKFE 165
Query: 284 KIKDRRFGRTHLAIY 298
KIK +G T L+I+
Sbjct: 166 KIKSVSYGITVLSIF 180
>gi|257413345|ref|ZP_04742727.2| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
gi|257203918|gb|EEV02203.1| RNA methyltransferase, RsmD family [Roseburia intestinalis L1-82]
Length = 188
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +G+D RP + +K F+I+Q GC +LDL++G+G
Sbjct: 5 MRIIAGTARSLPLKTVEGLDTRPTTDRIKETLFNIIQDEIPGC-------YFLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + V N+ +T F + ++ V + L E G
Sbjct: 58 QMGLEAVSRGAQYAVFVENNKKAAACVE-DNIRFTKFTKETKLYNSDVLSALRAME---G 113
Query: 228 KDGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
K FD + + PPY +Y+VL + + S+L+ ++ I+VE L T
Sbjct: 114 K-YRFDIIFMDPPYKQEFEYDVL-SYLKDSSLLKENGIIIVEASLDT 158
>gi|295099932|emb|CBK89021.1| RNA methyltransferase, RsmD family [Eubacterium cylindroides T2-87]
Length = 182
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + L S KG RP + VKGA F S GG S GR LD YSGTG+
Sbjct: 1 MRIVAGKYGSRPLKSCKGDTTRPTADKVKGAVFS---SLGG---SFDSGRMLDCYSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG VE D + NV+ N++ + I + + + + R ++
Sbjct: 55 MALEALSRGMKFATMVEKDRMAL-NVICENVKSLQEKNC-EIISGSIFSVMNRLKE---- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+D + + PPY L+ ++ + +L+ + +VVE + + L K K++
Sbjct: 109 --AYDLVYIDPPYKEEKNVELIEKLDQLSLINTNGMVVVESLAQQTFPEQIATLSKQKEK 166
Query: 289 RFGRTHLAIYGPDWAQ 304
+G T + Y Q
Sbjct: 167 VYGITKITYYRKQEQQ 182
>gi|91975754|ref|YP_568413.1| hypothetical protein RPD_1274 [Rhodopseudomonas palustris BisB5]
gi|91682210|gb|ABE38512.1| conserved hypothetical protein 95 [Rhodopseudomonas palustris
BisB5]
Length = 185
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A G P S R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESLFNILMHAYGDPIS--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG FV+ + +L N+E G ++ ++ R L A
Sbjct: 59 LGIEAASRGAKFTLFVD-NGAEARALLRANVEALGLGGITKVYR-RDAANLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + + PPY E +A + + D+ ++VE
Sbjct: 115 --PFSLVFLDPPYRMQLAEKALASLRDGGWLTPDALVIVE 152
>gi|338534578|ref|YP_004667912.1| putative methyltransferase [Myxococcus fulvus HW-1]
gi|337260674|gb|AEI66834.1| putative methyltransferase [Myxococcus fulvus HW-1]
Length = 185
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 20/196 (10%)
Query: 109 LQVLGGKARRKKLLSPKG--MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGTAKGRALAGPKSSSRHIRPTADRVRETLFNVLGQ------FLDGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVR-VETFLERA 222
G++G+EA+SRG + V+ D ++ + N G ++V S R +E R
Sbjct: 55 GALGLEAVSRGAGQAVLVDQDREALT-LCRENARAVGLAAQVEVLSSPVARALEALKRRG 113
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
E+ F+ + PPY A E ++ I + L+ +VVE+ R DT L
Sbjct: 114 ER-------FELIFADPPYAARVVETVLDGIVAAGLLTPAGMVVVEHDKREAAPDTHAGL 166
Query: 283 VKIKDRRFGRTHLAIY 298
+ RRFG T ++ Y
Sbjct: 167 TREDQRRFGDTLVSFY 182
>gi|373496651|ref|ZP_09587197.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
gi|371965540|gb|EHO83040.1| RsmD family RNA methyltransferase [Fusobacterium sp. 12_1B]
Length = 182
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + +I N+ G+ D + + RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEAL-KYIIENVNTLGYEDRCRAY----KNDALRAIEILGR 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ I K+ ++ I+ E+ + ++ + G + +
Sbjct: 110 KGEKFDIIFMDPPYKEEICTRVIKAIEKNGILADGGLIISEHHVFEELEEEIGEFKRADE 169
Query: 288 RRFGRTHLAIY 298
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|167648597|ref|YP_001686260.1| methyltransferase [Caulobacter sp. K31]
gi|167351027|gb|ABZ73762.1| methyltransferase [Caulobacter sp. K31]
Length = 187
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P LR R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIVTPPGDTTRPTSDRARQAVFNILEHAAWAP-ELRGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + NLE G S +H R
Sbjct: 60 LGLEAMSRGAAFCLFVETDD-AARGAIRENLEAFGLFGQSRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E +A++ + + ++ E
Sbjct: 116 GAPFTLAFLDPPYAKGLGEKALAELVAGGWLAPGAVVMFE 155
>gi|395242934|ref|ZP_10419922.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
gi|394484754|emb|CCI80930.1| 16S rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus hominis
CRBIP 24.179]
Length = 182
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLYTLKSNSTRPTSDKVKESVFNSLGQFFSG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + V+++ N++ N+ T D + +R F + + F
Sbjct: 54 ALGIEAVSRGYDHAYLVDINSQ-ACNIIKKNVALTKEKD--RFNVIRNSDF-KALKIFET 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY +M + K L+ + +V E T++ + G ++ KD
Sbjct: 110 QTIKFDLVFLDPPYAKEKIVKVMNTLLKYDLLNDHALVVAETDQHTELPEVDGFILN-KD 168
Query: 288 RRFGRTHLAIY 298
GRT + +Y
Sbjct: 169 HHLGRTKVKVY 179
>gi|206976739|ref|ZP_03237643.1| putative methyltransferase [Bacillus cereus H3081.97]
gi|217961411|ref|YP_002339979.1| putative methyltransferase [Bacillus cereus AH187]
gi|222097377|ref|YP_002531434.1| methyltransferase [Bacillus cereus Q1]
gi|229140656|ref|ZP_04269206.1| Methyltransferase [Bacillus cereus BDRD-ST26]
gi|229198043|ref|ZP_04324756.1| Methyltransferase [Bacillus cereus m1293]
gi|375285919|ref|YP_005106358.1| methyltransferase [Bacillus cereus NC7401]
gi|384181746|ref|YP_005567508.1| putative methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|423353695|ref|ZP_17331322.1| RsmD family RNA methyltransferase [Bacillus cereus IS075]
gi|423374272|ref|ZP_17351610.1| RsmD family RNA methyltransferase [Bacillus cereus AND1407]
gi|423567110|ref|ZP_17543357.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-A12]
gi|423574393|ref|ZP_17550512.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-D12]
gi|423604442|ref|ZP_17580335.1| RsmD family RNA methyltransferase [Bacillus cereus VD102]
gi|206745049|gb|EDZ56452.1| putative methyltransferase [Bacillus cereus H3081.97]
gi|217064103|gb|ACJ78353.1| putative methyltransferase [Bacillus cereus AH187]
gi|221241435|gb|ACM14145.1| methyltransferase, putative [Bacillus cereus Q1]
gi|228585436|gb|EEK43541.1| Methyltransferase [Bacillus cereus m1293]
gi|228642808|gb|EEK99089.1| Methyltransferase [Bacillus cereus BDRD-ST26]
gi|324327830|gb|ADY23090.1| putative methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|358354446|dbj|BAL19618.1| methyltransferase, putative [Bacillus cereus NC7401]
gi|401088803|gb|EJP96983.1| RsmD family RNA methyltransferase [Bacillus cereus IS075]
gi|401094184|gb|EJQ02266.1| RsmD family RNA methyltransferase [Bacillus cereus AND1407]
gi|401211918|gb|EJR18664.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-D12]
gi|401214552|gb|EJR21278.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-A12]
gi|401245062|gb|EJR51420.1| RsmD family RNA methyltransferase [Bacillus cereus VD102]
Length = 188
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YFDGGVALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + V+ NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ D I+ E+ + + G LVK++
Sbjct: 111 EISFDLILIDPPYKDQKIVSLISVMDQHGLLHNDGLIMAEHGNDVVLPEAIGRLVKVRAE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 NYGITAISIY 180
>gi|21673792|ref|NP_661857.1| methylase [Chlorobium tepidum TLS]
gi|21646921|gb|AAM72199.1| methylase, putative [Chlorobium tepidum TLS]
Length = 184
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+ G+ R +K+ D+RP VK + FD L + LDL++G G+
Sbjct: 1 MQIHAGRYRGRKIRHLPSRDIRPCTSRVKKSLFDTLAAR----LDFDDIEVLDLFAGFGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG FVE + + + ++ G + V FL+R E
Sbjct: 57 LGFEALSRGAKSACFVEQNRQALETMKATAVD-IGAGASARFVMADVTAFLKREE----- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + PPY DYE L+ I + L+ D +++E+ D + G L +
Sbjct: 111 -GSFDLVFCDPPYRWEDYEYLIRSILDTGLLAPDGLLLMEHHASHDFSQSRGYLFH---K 166
Query: 289 RFGRTHLAIYGP 300
+G T ++ + P
Sbjct: 167 DYGTTRVSFFTP 178
>gi|365845621|ref|ZP_09386382.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
gi|364559688|gb|EHM37657.1| RNA methyltransferase, RsmD family [Flavonifractor plautii ATCC
29863]
Length = 181
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +L G++ RP + VK + F+I+Q + R LDL+ GTG
Sbjct: 1 MRVITGTARGMRLKELPGLETRPTTDKVKESVFNIVQF------DVEGRRVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV++ + V+ NL T + + FL G
Sbjct: 55 MGIEALSRGAASCTFVDVRKEAAA-VIRANLAHTKLEEQGKVVQGDYLAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY A E + I+K ++ ++ IV E + + + K +D
Sbjct: 108 REKFDLVFLDPPYGAGMLEKALEAIAKIDIMTENGIIVCESAAESVLPELAAPYAKGRDY 167
Query: 289 RFGRTHLAIY 298
R+G+ + +Y
Sbjct: 168 RYGKIKITLY 177
>gi|291531108|emb|CBK96693.1| RNA methyltransferase, RsmD family [Eubacterium siraeum 70/3]
Length = 184
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR +KL +P+G+DVRP + VK A F +Q LDL+SG+G
Sbjct: 1 MRVITGTARGRKLTAPEGLDVRPTKDSVKEAIFSAIQ------FETEGSVVLDLFSGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + + V+ + + N+ GF I + FL +
Sbjct: 55 LGIEAVSRGAKKAYLVDSSQNSI-KFIKQNVAHVGFESQCEIVNMPNSAFLRTTGE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK---DSFIVVEYPLRTDMLDTCGCLVKI 285
FD + PP YE + Q S AL K I+ E+ + + V
Sbjct: 110 --KFDIALLDPP-----YEKSLIQRSLPALTEKMKDTGVIICEHEPGCRLPEEINGFVIT 162
Query: 286 KDRRFGRTHLAIY 298
K +++G+T L Y
Sbjct: 163 KSKKYGKTALTFY 175
>gi|406586571|ref|ZP_11061499.1| methyltransferase, putative [Streptococcus sp. GMD1S]
gi|404473922|gb|EKA18245.1| methyltransferase, putative [Streptococcus sp. GMD1S]
Length = 179
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|294501044|ref|YP_003564744.1| putative methyltransferase [Bacillus megaterium QM B1551]
gi|294350981|gb|ADE71310.1| putative methyltransferase [Bacillus megaterium QM B1551]
Length = 189
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMI------GPFFEGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + + NL D + ++ E L+ ++ +
Sbjct: 55 LGIEALSRGIDKVIFVDRDGKAIQTIK-ANLASCRLEDRAEVYRNDAERALKAIKK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ D + + PPY A + L+ +S+ L+ K IV E+ + + G KIK
Sbjct: 111 ELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVQLDNEIGLFEKIKSE 170
Query: 289 RFGRTHLAIY 298
+G ++IY
Sbjct: 171 TYGIIGVSIY 180
>gi|258511318|ref|YP_003184752.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478044|gb|ACV58363.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 184
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+G VRP + VK + F+++ P L G +DL++GTG+
Sbjct: 1 MRVIAGRWRGISLESPRGSAVRPTTDRVKESMFNLI------PHQLE-GLVIDLFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FV+ DP + ++ NL+ G +S V V + +F
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVG---AASQAEVWVLDWARALRRFEAS 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
Y+ V PPY + ++ + + + G +V E P D+ + G V K R
Sbjct: 110 GEVAAYVFVDPPYQEQLWIPVLRALPAARVSGA---VVCEAPASLDLPEQVGDFVLQKSR 166
Query: 289 RFGRTHLAIY 298
++G + IY
Sbjct: 167 QYGDIAVRIY 176
>gi|407796602|ref|ZP_11143555.1| putative methyltransferase [Salimicrobium sp. MJ3]
gi|407019118|gb|EKE31837.1| putative methyltransferase [Salimicrobium sp. MJ3]
Length = 185
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L S + RP + VK A F I+ G+ D ++G+G
Sbjct: 1 MRVISGSHKGQRLYSVPTHNTRPTTDKVKEAIFQII------GPYFDGGKVFDCFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG E F++ +P + + NL+ + S + +T RA + GK
Sbjct: 55 LGIECLSRGAEEAVFIDKEPAAIKTIW-DNLKSLKLEERSEV----FKTDAYRAMKAAGK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F Y+ + PPY YE L+ + + L+ + + IV E+ + + G + K
Sbjct: 110 RGLTFSYVFLDPPYKKFSYEELLKNLQEYQLLEEKAIIVCEHDVSESLPQQVGSVFMFKQ 169
Query: 288 RRFG 291
+G
Sbjct: 170 EEYG 173
>gi|75762263|ref|ZP_00742150.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|218899086|ref|YP_002447497.1| methyltransferase [Bacillus cereus G9842]
gi|228902435|ref|ZP_04066589.1| Methyltransferase [Bacillus thuringiensis IBL 4222]
gi|228909756|ref|ZP_04073579.1| Methyltransferase [Bacillus thuringiensis IBL 200]
gi|228922681|ref|ZP_04085980.1| Methyltransferase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228966951|ref|ZP_04127989.1| Methyltransferase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402564658|ref|YP_006607382.1| methyltransferase [Bacillus thuringiensis HD-771]
gi|423359033|ref|ZP_17336536.1| RsmD family RNA methyltransferase [Bacillus cereus VD022]
gi|423561597|ref|ZP_17537873.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-A1]
gi|423582140|ref|ZP_17558251.1| RsmD family RNA methyltransferase [Bacillus cereus VD014]
gi|423635244|ref|ZP_17610897.1| RsmD family RNA methyltransferase [Bacillus cereus VD156]
gi|434377035|ref|YP_006611679.1| methyltransferase [Bacillus thuringiensis HD-789]
gi|74490246|gb|EAO53575.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|218543558|gb|ACK95952.1| putative methyltransferase [Bacillus cereus G9842]
gi|228792685|gb|EEM40249.1| Methyltransferase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228836955|gb|EEM82297.1| Methyltransferase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228850045|gb|EEM94876.1| Methyltransferase [Bacillus thuringiensis IBL 200]
gi|228857179|gb|EEN01685.1| Methyltransferase [Bacillus thuringiensis IBL 4222]
gi|401084905|gb|EJP93151.1| RsmD family RNA methyltransferase [Bacillus cereus VD022]
gi|401201854|gb|EJR08719.1| RsmD family RNA methyltransferase [Bacillus cereus MSX-A1]
gi|401213019|gb|EJR19760.1| RsmD family RNA methyltransferase [Bacillus cereus VD014]
gi|401279230|gb|EJR85160.1| RsmD family RNA methyltransferase [Bacillus cereus VD156]
gi|401793310|gb|AFQ19349.1| methyltransferase [Bacillus thuringiensis HD-771]
gi|401875592|gb|AFQ27759.1| methyltransferase [Bacillus thuringiensis HD-789]
Length = 188
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKAIFVDRDSKAIK-VIHQNLESCRIQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISVMDQHGLLHSDGLIMAEHGNDVVLPNSIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|406983082|gb|EKE04331.1| hypothetical protein ACD_20C00086G0021 [uncultured bacterium]
Length = 185
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 17/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW--LDLYSGT 166
+ + GG +R+K+ + + +VRP V+ + F+I+QS L G LDL++G+
Sbjct: 1 MLITGGFLKRRKINTVESKEVRPTSSKVRESIFNIIQSNSDI---LHHGDAVVLDLFAGS 57
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +G+EA SRG +V +VE +P VS +L NL +D I + + L+R E
Sbjct: 58 GILGLEAYSRGAKKVIYVEKNPNAVS-LLKENLAQFD-IDYELIVSDAILA-LDRFENIT 114
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR---TDMLDTCGCLV 283
FD + + PPY + E +A+I + L+ D IVVE+ + T++ G V
Sbjct: 115 -----FDLIFIDPPYASKLIESSLAKIKSNNLLNPDGIIVVEHNPKYNTTEIALNLGYEV 169
Query: 284 KIKDRRFGRTHLAI 297
++++++G T + I
Sbjct: 170 -LREKKYGDTAITI 182
>gi|375308169|ref|ZP_09773456.1| methyltransferase [Paenibacillus sp. Aloe-11]
gi|375080500|gb|EHS58721.1| methyltransferase [Paenibacillus sp. Aloe-11]
Length = 213
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + G RP + VK A F ++ G LDL++G+G
Sbjct: 1 MRVVSGSAKGRPLKAVPGTGTRPTTDKVKEALFSMIGP------YFDGGVALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQF 225
+GIEA+SRG + F++M+ + V+ NL TG + E F RA +
Sbjct: 55 LGIEALSRGMDKAVFIDMESKSI-EVIKENLRKTGL-------EGQAEVFRNDAGRALKA 106
Query: 226 VGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K G FD + + PPY + LM+++++ L+ ++ IV+EY ++ G +
Sbjct: 107 LAKRGALFDAVFLDPPYRLKHGDELMSRMAELDLLRSEAIIVLEYESGHAYPESFGPFEQ 166
Query: 285 IKDRRFGRTHLAIY 298
+K +G T L+IY
Sbjct: 167 VKKAVYGETALSIY 180
>gi|343521011|ref|ZP_08757979.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396217|gb|EGV08754.1| RNA methyltransferase, RsmD family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 180
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KLLSP VRP + +K + F+IL L DL+ G+G+
Sbjct: 1 MRIISGKKRGLKLLSPVDYSVRPTTDKIKESIFNILFEIDYNSIVL------DLFCGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG +V+F + + NLE + FLD S I + +++ F
Sbjct: 55 IGIEFLSRGAKKVYFCDFSEDSLKTTK-KNLENSEFLDKSIIIN---KDYMDCLNYFYNN 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FDY+ + PPY + + I + ++ +D I++E TD + IK++
Sbjct: 111 GLKFDYIFLDPPYKYEYIKKALDFIWNNNILKEDGIIIIE----TDKDISIENFEIIKEK 166
Query: 289 RFGRTHLAIYG 299
++ + + G
Sbjct: 167 KYSKIKVIFLG 177
>gi|337286565|ref|YP_004626038.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
gi|335359393|gb|AEH45074.1| methyltransferase [Thermodesulfatator indicus DSM 15286]
Length = 178
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GK + + L SPK +RPMM+ V+ A FD L + + LDL+ GTG+
Sbjct: 1 MRITAGKYKGRVLKSPKSRTIRPMMDKVRKALFDSLG------LKVEGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +V FV+ +S ++ NL G + + I + + L++ K
Sbjct: 55 LGLEALSRGAEKVVFVDQSGEALS-LVKENLASLGEKN-AEIKRLTLPNGLKKL-----K 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + +TPPY + +I + + +D +VVE D + G L+K +++
Sbjct: 108 PNTFDLIFITPPYGTGLALKTLKEI--ESFLSEDGVVVVEENTEEDFPNEMGNLLKFREK 165
Query: 289 RFGRTHLAIY 298
+G+T L Y
Sbjct: 166 TYGQTRLHFY 175
>gi|209886354|ref|YP_002290211.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|337740107|ref|YP_004631835.1| methyltransferase [Oligotropha carboxidovorans OM5]
gi|386029124|ref|YP_005949899.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|209874550|gb|ACI94346.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
gi|336094192|gb|AEI02018.1| putative methyltransferase [Oligotropha carboxidovorans OM4]
gi|336097771|gb|AEI05594.1| putative methyltransferase [Oligotropha carboxidovorans OM5]
Length = 184
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + + SP ++RP + ++ + F+IL A G PA R LDL++GTG+
Sbjct: 1 MRVVGGKMRGRSIASPASQEIRPTQDRLRESLFNILMHAYGNPAL--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFID-NGAAARALLRNNVEALGLGGVTKVYR-RDATALGPAHPME-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E + + + D+ +VVE
Sbjct: 115 --PFTLAFLDPPYGKGLAEKALTSLRDGKWLVPDALVVVE 152
>gi|209526545|ref|ZP_03275071.1| methyltransferase [Arthrospira maxima CS-328]
gi|376002121|ref|ZP_09779968.1| Putative methyltransferase [Arthrospira sp. PCC 8005]
gi|423066385|ref|ZP_17055175.1| hypothetical protein SPLC1_S420310 [Arthrospira platensis C1]
gi|209493051|gb|EDZ93380.1| methyltransferase [Arthrospira maxima CS-328]
gi|375329507|emb|CCE15721.1| Putative methyltransferase [Arthrospira sp. PCC 8005]
gi|406712137|gb|EKD07327.1| hypothetical protein SPLC1_S420310 [Arthrospira platensis C1]
Length = 183
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
++L + G + RP V+ A F+I Q GC RWLDL +G+GS+G EA+ RG
Sbjct: 9 RQLKTLPGQNTRPTPSRVREAVFNIWQDITGC-------RWLDLCAGSGSMGAEALCRGA 61
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
+ +E I W V ++R + ++ FD +
Sbjct: 62 AMAVAIEQSG---PACQIIKQNWQQVATPEQQFRVLRGDVVKRLKSLAAEE--FDRIYFD 116
Query: 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
PPYTA YE ++ I+K +L+ ++ E+ + +M++ G L ++ + +G +A Y
Sbjct: 117 PPYTANLYEPVLEAIAKYSLLAAGGELIAEHDPKREMVEVSG-LAIVRQKVYGGCAIAFY 175
Query: 299 GP 300
P
Sbjct: 176 EP 177
>gi|363895553|ref|ZP_09322548.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
gi|361957305|gb|EHL10615.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium ACC19a]
Length = 184
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK D+RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDDIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQ 224
+GIEA SR + VE D + N + ++ D +I V V FL+ + +
Sbjct: 55 IGIEAFSRDAKHITMVENAKDSLKLINANLKSINA----DKGNIELVNRDVIDFLKTSRE 110
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+D + PPY ++ +S + L+ + +++E + L+ C +
Sbjct: 111 ------KYDIIFADPPYDYSKINEIIKIVSDNKLLSDEGILIIETE-KDFTLEECSDFII 163
Query: 285 IKDRRFGRTHLAI 297
K++ + + L +
Sbjct: 164 EKEKIYSISKLTV 176
>gi|295706393|ref|YP_003599468.1| methyltransferase [Bacillus megaterium DSM 319]
gi|384045104|ref|YP_005493121.1| RsmD family RNA methyltransferase [Bacillus megaterium WSH-002]
gi|294804052|gb|ADF41118.1| putative methyltransferase [Bacillus megaterium DSM 319]
gi|345442795|gb|AEN87812.1| RNA methyltransferase, RsmD family [Bacillus megaterium WSH-002]
Length = 189
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK A F+++ G LDL+ G+G
Sbjct: 1 MRVVAGLYKGHALKAVPGYSTRPTTDKVKEAIFNMIGP------FFEGGTALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ D + + NL D + ++ E L+ ++ +
Sbjct: 55 LGIEALSRGIDKVIFVDRDGKAIQTIK-ANLASCRLEDRAEVYRNDAERALKAIKK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ D + + PPY A + L+ +S+ L+ K IV E+ + + G KIK
Sbjct: 111 ELTVDLLLLDPPYKAQKLKALIETVSEENLLAKTGIIVAEHSHDVHLDNEIGLFEKIKSE 170
Query: 289 RFGRTHLAIY 298
+G ++IY
Sbjct: 171 TYGIIGVSIY 180
>gi|358051931|ref|ZP_09145957.1| methyltransferase [Staphylococcus simiae CCM 7213]
gi|357258581|gb|EHJ08612.1| methyltransferase [Staphylococcus simiae CCM 7213]
Length = 180
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLFDIDGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVQ-VIKANLKQLDLMPQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY + + QIS+ L+ ++ IV E+ D+
Sbjct: 109 EIQFDIIFLDPPYNKGLIDKALEQISQFNLLKENGIIVCEFSNHEDI 155
>gi|418296514|ref|ZP_12908357.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355538689|gb|EHH07931.1| hypothetical protein ATCR1_03304 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 185
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P SL R LD+++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHA--YPESLDGTRVLDVFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRGC FVE + V L W +D +H R A + G
Sbjct: 59 VGLEALSRGCRVALFVE------NGVEGRGLLWEN-IDALGLHG-RARILRRDATKLGGV 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK-I 285
+ PFD + PPY E + + + ++E R D+ + K +
Sbjct: 111 NNIEPFDLLFADPPYGHGHGEKAFSAAHGGGWLTPGALAILEE--RGDVAVKVDPVFKPL 168
Query: 286 KDRRFGRTHLAIY 298
+ R FG T + Y
Sbjct: 169 ESRIFGDTKMHFY 181
>gi|291320108|ref|YP_003515366.1| DNA methylase [Mycoplasma agalactiae]
gi|290752437|emb|CBH40408.1| DNA methylase [Mycoplasma agalactiae]
Length = 182
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F L+ L LDL++G+G
Sbjct: 1 MIRVISGKYRHRLLNWPKSKDIRPTMDKVREAIFSSLR------MQLEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IEA+S + VE D V + + +V+++ +E F A F+
Sbjct: 55 SMAIEAVSNYAMKAVAVEKDKEAVKII---------YENVNALQINNIEVFNTNALAFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
K G FDY+ + PPY +Y++L + + ++ + K+ IVVE + G +
Sbjct: 106 SKTGRVFDYIFLDPPYA--EYDLLNECIKLVKQNDFLSKNGLIVVETNDGEKITLPEGLM 163
Query: 283 VKIKDRRFGRTHL 295
V+ K++++G+ H+
Sbjct: 164 VQ-KNKKYGKVHI 175
>gi|387927153|ref|ZP_10129832.1| methyltransferase [Bacillus methanolicus PB1]
gi|387589297|gb|EIJ81617.1| methyltransferase [Bacillus methanolicus PB1]
Length = 186
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK A F+I+ G LDL++G+G
Sbjct: 1 MRVVSGSCKGRILKAVLGSSTRPTTDKVKEAIFNII------GPYFAGGLGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++V FV+ D + ++ N++ G + + ++ ERA + + K
Sbjct: 55 LGIEALSRGLNKVIFVDKDKKAIQ-IIHENIKNCGLEEHAEVY----RNDAERALKAIIK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD++ + PPY ++ I K L+ + I+ E+ + + G ++ K
Sbjct: 110 RGLVFDFIFLDPPYKKQQISKILETIDKENLLTESGAIICEHSADEHLPEKAGNFIRKKF 169
Query: 288 RRFGRTHLAIY 298
++G ++IY
Sbjct: 170 EQYGIIAVSIY 180
>gi|270292102|ref|ZP_06198317.1| putative type II DNA modification methyltransferase [Streptococcus
sp. M143]
gi|417934125|ref|ZP_12577445.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
F0392]
gi|270279630|gb|EFA25472.1| putative type II DNA modification methyltransferase [Streptococcus
sp. M143]
gi|340770695|gb|EGR93210.1| RNA methyltransferase, RsmD family [Streptococcus mitis bv. 2 str.
F0392]
Length = 179
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 TGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|242373354|ref|ZP_04818928.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
gi|242348717|gb|EES40319.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis M23864:W1]
Length = 180
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMEKVIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+ FD + + PPY + + +IS+ L+ ++ IV E+ D+
Sbjct: 109 EIQFDIIFLDPPYKKGLIDEAIERISEFNLLKENGIIVCEFSNHEDI 155
>gi|146296796|ref|YP_001180567.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145410372|gb|ABP67376.1| putative methyltransferase [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 184
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F++L P D ++GTG+
Sbjct: 1 MRVISGQNKGRRLKSANIQGLRPTSDRVKEALFNMLS-----PFLNEEVVVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D V +V+ NL+ G + + + V FL K
Sbjct: 56 VGIEFLSRGVKEVVFVEKDERCV-HVIKENLKDLGLSERAKVFKTDVLRFLR------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
P FD + + PPY + + +I K+ + ++ IVVE L D L ++
Sbjct: 109 HCPIFDIIFLDPPYKSTYAAECIEEILKNNKISQNGLIVVESNL--DFNFESAKLTILRQ 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|293364742|ref|ZP_06611459.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307702989|ref|ZP_07639936.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316192|gb|EFE56628.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|307623382|gb|EFO02372.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 179
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|15964555|ref|NP_384908.1| hypothetical protein SMc00902 [Sinorhizobium meliloti 1021]
gi|334315268|ref|YP_004547887.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|384528513|ref|YP_005712601.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|384534914|ref|YP_005718999.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407719667|ref|YP_006839329.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|433612568|ref|YP_007189366.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
gi|15073733|emb|CAC45374.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333810689|gb|AEG03358.1| methyltransferase [Sinorhizobium meliloti BL225C]
gi|334094262|gb|AEG52273.1| methyltransferase [Sinorhizobium meliloti AK83]
gi|336031806|gb|AEH77738.1| putative methyltransferase [Sinorhizobium meliloti SM11]
gi|407317899|emb|CCM66503.1| hypothetical protein BN406_00458 [Sinorhizobium meliloti Rm41]
gi|429550758|gb|AGA05767.1| RNA methyltransferase, RsmD family [Sinorhizobium meliloti GR4]
Length = 186
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRARESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 IGLEALSRGCRQVLFVEQGVE-GRGLLRINIEALGL-------QGRAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|424781003|ref|ZP_18207869.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
gi|422842423|gb|EKU26875.1| Ribosomal RNA small subunit methyltransferase D [Catellicoccus
marimammalium M35/04/3]
Length = 185
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R ++L S +G RP + VK A F ++ G LDLYSG+G
Sbjct: 1 MRVIAGEYRGRRLKSLEGKQTRPTTDKVKEAVFSMI------GPYFDGGTCLDLYSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E + ++ + V+ N+E G D + I L +QF +
Sbjct: 55 LAIEALSRGMKEAYCIDHHYQAI-KVIKENMELVGCADRAVILKQDANQAL---QQFAAQ 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT-DMLDTCGCLVKIKD 287
FD + + PPY + E + I ++ L+ I+ E +T ++ D L +
Sbjct: 111 RQSFDLIFLDPPYAKQEIEKQLTFIMENQLLSDMGIIMCEVDAKTVELPDEIAGLYCRRR 170
Query: 288 RRFGRTHLAIYGPD 301
+G T + +Y D
Sbjct: 171 ATYGITQIVLYEKD 184
>gi|418403585|ref|ZP_12977071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|359502495|gb|EHK75071.1| methyltransferase [Sinorhizobium meliloti CCNWSX0020]
Length = 186
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLAAPKSDDIRPTTDRTRESLFNILSHA--YPEALDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 IGLEALSRGCRQVLFVEQGVE-GRGLLRINIEALGL-------QGRAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|254281665|ref|ZP_04956633.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR51-B]
gi|219677868|gb|EED34217.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR51-B]
Length = 215
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 10/201 (4%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T R L+++GG R + L+ P +RP + V+ F+ L A + R LDL+
Sbjct: 15 TARRKLRIIGGTWRGRTLVFPDLEGLRPTPDRVRETLFNWL------VAHITGSRCLDLF 68
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+G+G++G+EA+SRG + FVE + + + ++ D S + V F+ R+
Sbjct: 69 AGSGALGLEALSRGAARCDFVERHR-LAAETIEQHIRQLDAADRSRVAVVDASDFISRSR 127
Query: 224 QF-VGKD--GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
G D GPFD + + PP+ + Q+ + + + S + +E +T D
Sbjct: 128 PIDSGHDQSGPFDIVFIDPPFADALVAGITQQLIAADCLKQGSLVYIEQSTKTAEADLDQ 187
Query: 281 CLVKIKDRRFGRTHLAIYGPD 301
L ++ +R G +Y D
Sbjct: 188 RLALLRQKRAGEVDYRLYQFD 208
>gi|332293433|ref|YP_004432042.1| hypothetical protein Krodi_2799 [Krokinobacter sp. 4H-3-7-5]
gi|332171519|gb|AEE20774.1| Conserved hypothetical protein CHP00095 [Krokinobacter sp.
4H-3-7-5]
Length = 186
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+IL+S + R LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNILRSN----YHMSQLRVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETF--LERAE 223
++ E SRG ++ V+ + V N E+ SI T++ + F LERA
Sbjct: 57 NISYEFASRGSDQITAVDANYGCVQFINKTAEEFEF-------SIQTIKSDVFKYLERAR 109
Query: 224 QFVGKDGPFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
G +D + PPY D+E + + K L+ +D +++E+ T M D+
Sbjct: 110 ------GTYDIIFADPPYDIDIKDFEKIATLVFKQNLLDQDGTLIIEHGKYTKM-DSFPN 162
Query: 282 LVKIKDRRFGRTHLAIYG 299
V+ R +G + +G
Sbjct: 163 YVQT--RNYGGNAFSFFG 178
>gi|343127525|ref|YP_004777456.1| hypothetical protein BbiDN127_0205 [Borrelia bissettii DN127]
gi|342222213|gb|AEL18391.1| conserved hypothetical protein [Borrelia bissettii DN127]
Length = 165
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + + LD+++GTG + IEA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKILDVFAGTGIMSIEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + N L+ N + V + + F + AE F+G KD +D++ + PP
Sbjct: 55 HLVECNRK-IKNTLVKNFSF-----VEEFY----KFFFQSAEDFLGKKDLFYDFIYLDPP 104
Query: 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299
+ + L+ I K ++ I++ YP D+ KI +F +L YG
Sbjct: 105 FNYKNKVNLLEIILKGKILNDKVSIIMHYPSGEDL--------KINTSKFSIYNLKRYG 155
>gi|260886980|ref|ZP_05898243.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
35185]
gi|330839234|ref|YP_004413814.1| methyltransferase [Selenomonas sputigena ATCC 35185]
gi|260863042|gb|EEX77542.1| RNA methyltransferase, RsmD family [Selenomonas sputigena ATCC
35185]
gi|329746998|gb|AEC00355.1| methyltransferase [Selenomonas sputigena ATCC 35185]
Length = 190
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL + LDL++GTG+
Sbjct: 1 MRIITGTARGCRLKTPKGEATRPTADRIKESLFNILGR------RVEAAHVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++++ N T L+ + + V L R G
Sbjct: 55 LGLEALSRGAASALFVDER---TASLIEENAAKTRLLERAEVVCADVLRILTR---LGGA 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F+ + PPY +E +++ + + L+ ++VE+ + L L +++
Sbjct: 109 GRSFNLIFCDPPYRQGLWEKVLSSVDREGLLAPGGCMIVEHGAEEEALPALENLRCVREE 168
Query: 289 RFGRT 293
R+G+T
Sbjct: 169 RYGKT 173
>gi|149177894|ref|ZP_01856492.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
gi|148843234|gb|EDL57599.1| N6-adenine-specific methylase [Planctomyces maris DSM 8797]
Length = 201
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 35/179 (19%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK RR+KL S G RP+ + VK F+ L +++ R D+YSGTGS
Sbjct: 1 MRIIAGKYRRRKLHSNPGQTTRPITDFVKEVLFEWLGD------TVKDKRVADIYSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD----------VSSIHTVRVETF 218
+G+EA+SRG + V F+E D + +L N+E G D +SS V F
Sbjct: 55 LGLEALSRGAASVVFIEQD-YKAHELLKRNVENIGAEDTTLCWKTNALLSSFRPKNVPDF 113
Query: 219 LERAEQFVGKDGPFDYMSVTPPYTAVD-------YEVLMAQISKSALVGKDSFIVVEYP 270
+ PF + + PPY +D V M ++SK + D +++ P
Sbjct: 114 V-----------PFSLIFLDPPYKMIDDLKPGSRLYVSMERLSKENVSSADCHLLLRTP 161
>gi|408529031|emb|CCK27205.1| RsmD family RNA methyltransferase [Streptomyces davawensis JCM
4913]
Length = 195
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LDGERILDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADARAARTIR---------ENVKSLGLPGAEVRSGKAEQVIQ 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + KD+ + VE R
Sbjct: 110 TPAPTEPYDLVFLDPPYAVTDDDLREILLTLRTQGWLAKDALVTVERSTRGGEFRWPDGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 EAIRARRYG 178
>gi|254293359|ref|YP_003059382.1| methyltransferase [Hirschia baltica ATCC 49814]
gi|254041890|gb|ACT58685.1| methyltransferase [Hirschia baltica ATCC 49814]
Length = 205
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + +++P+G D RP + + A F+IL A P + R +DLY+G+G+
Sbjct: 1 MRIVSGKLKGRSIITPEGRDTRPTSDRAREAMFNILAHAAWAP-PIEDARVIDLYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG S FVE V+ N+E + IH + ++ ++ G
Sbjct: 60 LGFEALSRGASYCLFVETH-VKARGVIRENIEKFQQFGTTRIHR---RSAVDLGKRPAGA 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
FD + PPY + + ++ K + D+ IV E
Sbjct: 116 GEKFDIAFMDPPYGYELVDPAITELVKGDWLADDAIIVAE 155
>gi|398782213|ref|ZP_10546031.1| putative RNA methylase [Streptomyces auratus AGR0001]
gi|396996950|gb|EJJ07929.1| putative RNA methylase [Streptomyces auratus AGR0001]
Length = 199
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGMFSTWESLDG---PLAGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D V + +V ++ VE +AEQ G
Sbjct: 58 AVGLEALSRGAAHVLLVEADARAVRTIRD---------NVRTVGLPGVEVRAGKAEQTAG 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D E+ ++ + + + + VE R
Sbjct: 109 APPPGEPYDVIFLDPPYVVTDAELCEILLTLRGQGWFAEQALVTVERSTRGGTFPWPDGF 168
Query: 283 VKIKDRRFGRTHL 295
IK RR+G L
Sbjct: 169 EAIKARRYGEGTL 181
>gi|258423833|ref|ZP_05686719.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|417891661|ref|ZP_12535718.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|418283095|ref|ZP_12895852.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|418306599|ref|ZP_12918378.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|418559124|ref|ZP_13123670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|418888915|ref|ZP_13443051.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993742|ref|ZP_13541379.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|257846065|gb|EEV70093.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9635]
gi|341850947|gb|EGS91876.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21200]
gi|365168692|gb|EHM60030.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21202]
gi|365246465|gb|EHM87015.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21194]
gi|371975415|gb|EHO92709.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21252]
gi|377746901|gb|EHT70871.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG290]
gi|377754425|gb|EHT78334.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 180
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + QIS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKQISEFNLLKENGIIVCEF 149
>gi|406591954|ref|YP_006739134.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|406594041|ref|YP_006741287.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|410858122|ref|YP_006974062.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|405782473|gb|AFS21221.1| hypothetical protein B599_0153 [Chlamydia psittaci MN]
gi|405787826|gb|AFS26569.1| hypothetical protein B711_0159 [Chlamydia psittaci CP3]
gi|410811017|emb|CCO01660.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
Length = 187
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 26/198 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A ++ +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVKDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ K FD + + PPY D + ++ I ++ K ++ +E +L G
Sbjct: 108 AK---KHMSFDLIYIDPPYNLEDSYIAAVLRDIVVGGILDKHGYVFLENASVEPIL-VEG 163
Query: 281 CLVKIKDRRFGRTHLAIY 298
+K + R+ G T+L+ Y
Sbjct: 164 LTLK-RSRKLGGTYLSEY 180
>gi|302554402|ref|ZP_07306744.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
gi|302472020|gb|EFL35113.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
DSM 40736]
Length = 195
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE DP V +V S+ E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADPRATRTVRD---------NVKSLGLPGAEVRSGKAEQIIR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + +++ + VE R
Sbjct: 110 TPPPGDPYDLVFLDPPYAVTDDDLREILLTLRSEGWLAEEALVTVERSTRGGEFRWPEGF 169
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 170 EALRARRYG 178
>gi|229829109|ref|ZP_04455178.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
gi|229792272|gb|EEP28386.1| hypothetical protein GCWU000342_01194 [Shuttleworthia satelles DSM
14600]
Length = 181
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR +LL+P+G+ RP + VK F+ILQ+ + +LDL++G+G
Sbjct: 1 MRVIAGSARRLQLLTPRGLKTRPTQDRVKETLFNILQN------EVEGAYFLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ ++ + NL + + V + L ++ +
Sbjct: 55 MGIEALSRGARAASFVDQGREAIA-CIQENLRRCHLEKRAKVIASDVSSALALWDR---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
D P D + + PPY E ++ Q+ L+ ++ +++E PL +D
Sbjct: 111 DLP-DLVFMDPPYGQDFEEGVLRQLRD--LLRANAIVIIESPLNSDF 154
>gi|228954206|ref|ZP_04116234.1| Methyltransferase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229071429|ref|ZP_04204651.1| Methyltransferase [Bacillus cereus F65185]
gi|229081182|ref|ZP_04213692.1| Methyltransferase [Bacillus cereus Rock4-2]
gi|423426065|ref|ZP_17403096.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3X2-2]
gi|423437383|ref|ZP_17414364.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X12-1]
gi|423503393|ref|ZP_17479985.1| RsmD family RNA methyltransferase [Bacillus cereus HD73]
gi|449090872|ref|YP_007423313.1| Methyltransferase [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|228702226|gb|EEL54702.1| Methyltransferase [Bacillus cereus Rock4-2]
gi|228711720|gb|EEL63673.1| Methyltransferase [Bacillus cereus F65185]
gi|228805526|gb|EEM52117.1| Methyltransferase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|401110812|gb|EJQ18711.1| RsmD family RNA methyltransferase [Bacillus cereus BAG3X2-2]
gi|401120538|gb|EJQ28334.1| RsmD family RNA methyltransferase [Bacillus cereus BAG4X12-1]
gi|402459614|gb|EJV91351.1| RsmD family RNA methyltransferase [Bacillus cereus HD73]
gi|449024629|gb|AGE79792.1| Methyltransferase [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 188
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKAIFVDRDSKAIK-VIHQNLESCRVQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISVMDQHGLLHSDGLIMAEHGNDVVLPNSIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|342732299|ref|YP_004771138.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455702|ref|YP_005668297.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959284|ref|ZP_12602123.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|417961160|ref|ZP_12603630.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|417965785|ref|ZP_12607266.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|417966664|ref|ZP_12607974.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|417967951|ref|ZP_12609007.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|418016299|ref|ZP_12655864.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372554|ref|ZP_12964646.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329754|dbj|BAK56396.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506634|gb|EGX28928.1| rRNA (guanine-N(2)-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984045|dbj|BAK79721.1| methyltransferase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380333731|gb|EIA24259.1| hypothetical protein SFB1_072G1 [Candidatus Arthromitus sp. SFB-1]
gi|380334200|gb|EIA24651.1| hypothetical protein SFB2_072G3 [Candidatus Arthromitus sp. SFB-2]
gi|380335824|gb|EIA25930.1| hypothetical protein SFB4_286G14 [Candidatus Arthromitus sp. SFB-4]
gi|380340366|gb|EIA28971.1| hypothetical protein SFB5_101G3 [Candidatus Arthromitus sp. SFB-5]
gi|380340533|gb|EIA29114.1| hypothetical protein SFB6_015G20 [Candidatus Arthromitus sp.
SFB-co]
gi|380342223|gb|EIA30668.1| hypothetical protein SFBSU_006G349 [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 189
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GKA+ +K++SP G DV RP ++ VK + F+I+Q+ R LDL++GTG
Sbjct: 1 MRIITGKAKGRKIISPDGYDVTRPTLDRVKQSIFNIIQND-----LTRDSIVLDLFAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G+E+ SRG + + + + S L N+ G D + + L R F G
Sbjct: 56 SLGLESASRGAKKTYLCDRNDITFS-YLKQNIRNLGLSDCAFAIKGEFDVNLRR---FEG 111
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ F+ M + PPY + + I + L+ K IVV+ + +
Sbjct: 112 KE-KFNLMFIDPPYNSDYVSRSINLIDELNLLDKYGLIVVKISSSESKFIESKNINLVDY 170
Query: 288 RRFGRTHLAIY 298
R++G T + Y
Sbjct: 171 RKYGNTTVCFY 181
>gi|421308175|ref|ZP_15758815.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60132]
gi|395906349|gb|EJH17248.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60132]
Length = 179
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R+ L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGRRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPYT E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGGFDLVFLDPPYTK---EQIVADIEKMAERELFSEDVMVVCETDKAIELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|421872854|ref|ZP_16304471.1| RNA methyltransferase, RsmD family [Brevibacillus laterosporus
GI-9]
gi|372458269|emb|CCF14020.1| RNA methyltransferase, RsmD family [Brevibacillus laterosporus
GI-9]
Length = 186
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 14/190 (7%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTGSV 169
++ G+ R + L + G RP + VK + F+++ G W LDLY+GTG +
Sbjct: 1 MISGEHRGRSLAAVPGTSTRPTTDKVKESIFNMI-------GPYFDGEWALDLYAGTGGL 53
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
GIEA+SRG ++ FV+ D N + NL+ + + ++ + RA + +
Sbjct: 54 GIEALSRGAAKAIFVDSDNKAF-NTVKQNLKTLRLDEQAEVYKIDS----ARALKVLSTR 108
Query: 230 G-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY E + Q+ + +V D++IV E+ + + + G + +
Sbjct: 109 GVQFDLVFLDPPYAKQKLEQEIEQLQQLHMVAADAWIVTEHDAKLTLPEQIGMCEQYRCS 168
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 169 TYGDTRVTIY 178
>gi|421074204|ref|ZP_15535244.1| methyltransferase [Pelosinus fermentans JBW45]
gi|392527710|gb|EIW50796.1| methyltransferase [Pelosinus fermentans JBW45]
Length = 189
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ ++++ N + T + + I V L+R F G
Sbjct: 55 LGLEALSRGASAAVFIDSSIDSITSIK-ENAQRTKLIGQAEILKNDVIRALDR---FAGT 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY + ++ +I +A+V +V+E+ ++ + L +
Sbjct: 111 GRSFDLIFCDPPYNKGLVQKVLEKIETNAIVNPKGILVIEHSKHEEIKNQWDHLQLRRVE 170
Query: 289 RFGRTHLAIYGPDWAQKKR 307
++G T ++ + Q+ R
Sbjct: 171 KYGETLISFLLYNTNQEVR 189
>gi|153004926|ref|YP_001379251.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028499|gb|ABS26267.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
Length = 179
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G AR ++L +P+G RP + V+GA F++L G LDLY+GTG
Sbjct: 1 MTRIIAGSARGRRLAAPRGEATRPTSDKVRGAVFNVLGQ------FFEGGDVLDLYAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++ +EA+SRGC+ VE D + ++ N GF + RVE + R
Sbjct: 55 ALALEALSRGCARAVCVEADRG-AAELIGRNAAACGFEGRVDVRRGRVEEVVPRLAAGA- 112
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
F V PPY A E +A ++ G + V E+ R + G L
Sbjct: 113 ----FALAFVDPPY-AEGPEAALALAARCLAPGARA--VAEHDARRPPPERIGGLALADR 165
Query: 288 RRFGRTHLAIY 298
RR+G T ++IY
Sbjct: 166 RRYGGTGISIY 176
>gi|257066531|ref|YP_003152787.1| methyltransferase [Anaerococcus prevotii DSM 20548]
gi|256798411|gb|ACV29066.1| methyltransferase [Anaerococcus prevotii DSM 20548]
Length = 187
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SPK RP VK A FD+L ++L DL+SGTG
Sbjct: 1 MRVVAGKYKGFILQSPKSNTSRPTDNKVKEAIFDMLYPFRNNFSAL------DLFSGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG EV F E + S +L N+E + S++ R++ F + +++
Sbjct: 55 MGIEFLSRGAREVTFNERNSSTFS-ILNKNIEK---VKASNVSVDRLD-FKKALKKYRDC 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FDY+ + PPY + + I + L+ + I+ E D D L IK++
Sbjct: 110 GSSFDYIFLDPPYEGDLVKQSVKLILEYELLTNEGIIITESDKELDFSD-MRELTLIKEK 168
Query: 289 RFGRTHLAIYGPD 301
+GR + IY +
Sbjct: 169 SYGRKQVNIYKAN 181
>gi|30022018|ref|NP_833649.1| methyltransferase [Bacillus cereus ATCC 14579]
gi|218232815|ref|YP_002368730.1| methyltransferase [Bacillus cereus B4264]
gi|228960191|ref|ZP_04121848.1| Methyltransferase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229047614|ref|ZP_04193204.1| Methyltransferase [Bacillus cereus AH676]
gi|229111399|ref|ZP_04240952.1| Methyltransferase [Bacillus cereus Rock1-15]
gi|229129207|ref|ZP_04258180.1| Methyltransferase [Bacillus cereus BDRD-Cer4]
gi|229146501|ref|ZP_04274872.1| Methyltransferase [Bacillus cereus BDRD-ST24]
gi|229152128|ref|ZP_04280322.1| Methyltransferase [Bacillus cereus m1550]
gi|296504424|ref|YP_003666124.1| methyltransferase [Bacillus thuringiensis BMB171]
gi|423585589|ref|ZP_17561676.1| RsmD family RNA methyltransferase [Bacillus cereus VD045]
gi|423630650|ref|ZP_17606397.1| RsmD family RNA methyltransferase [Bacillus cereus VD154]
gi|423640991|ref|ZP_17616609.1| RsmD family RNA methyltransferase [Bacillus cereus VD166]
gi|423649792|ref|ZP_17625362.1| RsmD family RNA methyltransferase [Bacillus cereus VD169]
gi|423656855|ref|ZP_17632154.1| RsmD family RNA methyltransferase [Bacillus cereus VD200]
gi|29897574|gb|AAP10850.1| Methyltransferase [Bacillus cereus ATCC 14579]
gi|218160772|gb|ACK60764.1| putative methyltransferase [Bacillus cereus B4264]
gi|228631320|gb|EEK87955.1| Methyltransferase [Bacillus cereus m1550]
gi|228637134|gb|EEK93593.1| Methyltransferase [Bacillus cereus BDRD-ST24]
gi|228654444|gb|EEL10309.1| Methyltransferase [Bacillus cereus BDRD-Cer4]
gi|228672175|gb|EEL27466.1| Methyltransferase [Bacillus cereus Rock1-15]
gi|228723861|gb|EEL75216.1| Methyltransferase [Bacillus cereus AH676]
gi|228799459|gb|EEM46419.1| Methyltransferase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|296325476|gb|ADH08404.1| methyltransferase [Bacillus thuringiensis BMB171]
gi|401234232|gb|EJR40718.1| RsmD family RNA methyltransferase [Bacillus cereus VD045]
gi|401264576|gb|EJR70684.1| RsmD family RNA methyltransferase [Bacillus cereus VD154]
gi|401280052|gb|EJR85974.1| RsmD family RNA methyltransferase [Bacillus cereus VD166]
gi|401283072|gb|EJR88969.1| RsmD family RNA methyltransferase [Bacillus cereus VD169]
gi|401289598|gb|EJR95302.1| RsmD family RNA methyltransferase [Bacillus cereus VD200]
Length = 188
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+GIEA+SRG + FV+ D + V+ NLE + + ++ ERA + +
Sbjct: 55 LGIEALSRGIDKAIFVDRDSKAIK-VIHQNLESCRVQEQAEVY----RNDAERAVKALIK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 110 REMSFDLILIDPPYKEQKIVSLISIMDQHGLLHSDGLIMAEHGNDVVLPNSIGRLVKVRA 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ENYGITAISIY 180
>gi|342216537|ref|ZP_08709184.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341587427|gb|EGS30827.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 178
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R KL +PK +D RP + VK F++L++ LR + LD ++GTG+
Sbjct: 1 MRIISGSKRGLKLNAPKSLDTRPTEDRVKENMFNLLEN-------LRDLKVLDAFAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S V F E + ++ L N+E L ++++ V T L + ++
Sbjct: 54 LGLEALSRGASYVLFCENNHKTLT-TLKDNIEKVN-LKSYTMYSGDVYTALNKTKE---- 107
Query: 229 DGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PPY ++ Y ++ + L+ ++ I+ E D+ CL K
Sbjct: 108 --KFDLVFLDPPYQDLEAYGKVLNHLVDRDLLNPEARIICERNHEIDLPQGFDCL---KS 162
Query: 288 RRFG 291
R++G
Sbjct: 163 RKYG 166
>gi|347761116|ref|YP_004868677.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
gi|347580086|dbj|BAK84307.1| N6-adenine-specific methylase [Gluconacetobacter xylinus NBRC 3288]
Length = 192
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPAS-LRPGRWLDLYSGTG 167
++++ G+ R + L +P G RP + V+ A FD L A LR R LD ++GTG
Sbjct: 1 MRIIAGECRGRSLRAPAGHATRPTADRVRQALFDTLSHASWAGLDFLRGARVLDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + V FVE D + L N+ G +++ TVR L G
Sbjct: 61 ALGLEALSRGAASVCFVERDRAAL-RALRENIAGCG---MNARSTVRALDLLRLPP--AG 114
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE------YPLRTDMLDTCGC 281
G D + + PPY +A + + +G + +VVE P+ D L
Sbjct: 115 AAGSVDLVLLDPPYGHDLPAQALAVLERGGWLGGSTLVVVETGAAENAPVAADRL----- 169
Query: 282 LVKIKDRRFGRTHLAIY 298
+ RR G HL ++
Sbjct: 170 ---LLTRRHGAAHLYVW 183
>gi|417936334|ref|ZP_12579651.1| RNA methyltransferase, RsmD family [Streptococcus infantis X]
gi|343403243|gb|EGV15748.1| RNA methyltransferase, RsmD family [Streptococcus infantis X]
Length = 213
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++++ G + L + G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 34 LMKIVSGIYGGRPLKTLDGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSG 87
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG S VE D N++ N+ T + S +++E+ RA + V
Sbjct: 88 GLSIEAVSRGMSSAVLVEKDRR-AQNIVAENIRMTK--ETSKFQLLKMES--SRALEQV- 141
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVK 284
DG FD + + PPY E +++ I K A L+ D +V E ++ + CL
Sbjct: 142 -DGVFDLIFLDPPYAK---EQIVSDIEKMAERNLLADDVMVVCETDKSVELPEEIACLGI 197
Query: 285 IKDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 198 WKEKIYGISKVTVY 211
>gi|224476238|ref|YP_002633844.1| hypothetical protein Sca_0749 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420845|emb|CAL27659.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 183
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLFAGSGG 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG E+ FV+ + V ++ NL+ S ++ + L + +
Sbjct: 53 LGIEALSRGMDEMIFVDQNFKAVK-IIKNNLKNLDLTKQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + +A+I + L+ K IV E+ + + +DT V IK
Sbjct: 109 EIQFDIIFLDPPYQKGLIDDALAKIEEFNLLKKSGIIVCEFNHKEN-IDTQSFEV-IKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|51598467|ref|YP_072655.1| hypothetical protein BG0208 [Borrelia garinii PBi]
gi|51573038|gb|AAU07063.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 179
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 109 LQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ V GK + +K+L P K VRP+M +V+ A F I+ + ++LD+++GTG
Sbjct: 1 MYVSSGKYKGRKILFPNKTGAVRPVMSLVREAFFSIIFK------DIINSKFLDVFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ +EA+SRG S H VE + L+ N + V + + F +RAE F+G
Sbjct: 55 IMSVEALSRGASLAHLVECNKK-TKITLVKNFSF-----VEEFY----KFFFQRAEDFLG 104
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD +D++ + PP+ + L+ ISK ++ I++ P D+
Sbjct: 105 KKDLFYDFIYLDPPFNYKNKINLLEIISKGKILNDKVNIIMHCPFGEDL 153
>gi|78044003|ref|YP_360292.1| methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 184
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +KL++PKG+ RP + VK A F+IL + LD ++GTG+
Sbjct: 1 MRIITGDARGRKLIAPKGLKTRPTSDRVKEAMFNILGY------RVIDAVVLDGFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG +F+E D S L N+E G+ D + + L +
Sbjct: 55 LGLEALSRGAKFSYFIEADREAFS-CLRRNIENLGYGDRAKAILGDIFKILPHINE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY E + I + L+ + IVVE + + + L I++
Sbjct: 110 --KFDLIFLDPPYGYGFEERAVLTILQLGLLKETGLIVVETAKKIGLNISSEKLGLIREA 167
Query: 289 RFGRTHLAIYGPDWAQKKRKSE 310
+G T L Y Q KR E
Sbjct: 168 VYGNTLLGFY-----QLKRGGE 184
>gi|386815781|ref|ZP_10102999.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
gi|386420357|gb|EIJ34192.1| 16S rRNA m(2)G-966 methyltransferase [Thiothrix nivea DSM 5205]
Length = 187
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 106 HRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSG 165
+ LL+++GG+ R ++L +RP + V+ F+ LQ C R LDL++G
Sbjct: 4 NNLLRIIGGEWRSRRLKFADAPGLRPTPDRVRETLFNWLQVQVPC------SRCLDLFAG 57
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+G++G EA+SRG EV VE P V+ L N+ G + +H +L+RA
Sbjct: 58 SGAIGFEALSRGAQEVVMVEKHPAAVA-ALRENIALLGAQNAVLVHDDAFR-YLQRAT-- 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
G FD + + PP+ E L+ I L+ +D + +E
Sbjct: 114 ----GAFDLIFLDPPFHKNLLEPLLEAIFARGLLSRDGMVYLE 152
>gi|417939638|ref|ZP_12582927.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK313]
gi|343389833|gb|EGV02417.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK313]
Length = 179
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVAANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 TGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|114569168|ref|YP_755848.1| putative methyltransferase [Maricaulis maris MCS10]
gi|114339630|gb|ABI64910.1| putative methyltransferase [Maricaulis maris MCS10]
Length = 186
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L++PKG RP + + F++++ A CPA + R D+Y+G+G+
Sbjct: 1 MRIVGGKFRNRALVAPKGKSTRPTSDRARENMFNVIEHADWCPA-IEGARVADIYAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG + F+E + N++ ++ IH R T L +G
Sbjct: 60 LGLEAISRGAAFCLFIEFAA-EARGAIRDNVDTLQLFGITRIHR-RDATALGDKPSNLGD 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF+ + + PPY + ++ + + V D+ V+E
Sbjct: 118 --PFNLVFLDPPYGFGLGTKTLEKLIEGSWVSDDAVAVLE 155
>gi|426402596|ref|YP_007021567.1| hypothetical protein Bdt_0592 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859264|gb|AFY00300.1| hypothetical protein Bdt_0592 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 199
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 25/202 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R +L++ +RP + VK F+ LQ + R +DL+ GTG+
Sbjct: 1 MRIIAGKYRGHQLVAFDADHIRPTTDRVKETLFNKLQF------DIDGARVVDLFCGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDP--WVVS-----NVLIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIEA+SRG FVE +P V++ + +P ++ I + V +L+
Sbjct: 55 LGIEALSRGAEFCTFVEKNPKSLVITRKNFEKLRVPAADY-------KIVNMDVIAYLKS 107
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
E PF+ + PP+T +M S SA GK + + +E + M D G
Sbjct: 108 YE-----GEPFNIIFADPPFTEKMAHFVMEAASTSAAFGKTTLLAIESQAKERMEDRYGS 162
Query: 282 LVKIKDRRFGRTHLAIYGPDWA 303
+++ + +G L+++ + A
Sbjct: 163 VIRYSKKEYGDKILSMFCHESA 184
>gi|297202619|ref|ZP_06920016.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197713194|gb|EDY57228.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 195
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWQSLLGGP--LQGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + +V +I E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADARAARTIR---------ENVRNIGLPGAEVRAGKAEQIIR 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D+++ ++ + + D+ + VE R
Sbjct: 110 TGAPTEPYDLVFLDPPYRVTDHDLREILLTLRTEHWLTPDALVTVERSTRGGEFHWPPGF 169
Query: 283 VKIKDRRFG 291
+K RR+G
Sbjct: 170 DAVKARRYG 178
>gi|452974597|gb|EME74417.1| rRNA methyltransferase YlbH [Bacillus sonorensis L12]
Length = 188
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F++ G LDLY+G+G
Sbjct: 1 MRVISGTYKGRALKAVPGTSTRPTTDKVKESIFNM------VGPYFDGGEGLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V NL+ G + ++ E L A V +
Sbjct: 55 LGIEALSRGFDRFVFVDRDFKAIQTVK-SNLKTLGLQQRAEVYRNDAERALHAA---VKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY E L++ I ++ ++ FI+ E+ + +T G L+ +
Sbjct: 111 GLTFDAVFLDPPYREQKLEALLSIIDEANILTDKGFILAEHVKEVVLPETVGELLMTRQE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGVTGVTIY 180
>gi|375086061|ref|ZP_09732579.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
gi|374566109|gb|EHR37360.1| RsmD family RNA methyltransferase [Megamonas funiformis YIT 11815]
Length = 190
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTGS
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ +S + N T +D S+I ++ + F ++ K
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI--LKADVF-ATIKKLHLK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY ++ + + L+ +D I++E+ + + ++++
Sbjct: 111 QTKFDIIFCDPPYHQDLCLKVLQMLHEYPLLTEDGIIIMEHAIEDKLPSDFHQYTLLRNQ 170
Query: 289 RFGR-THLAIY 298
++G T ++IY
Sbjct: 171 KYGSTTQISIY 181
>gi|359411392|ref|ZP_09203857.1| methyltransferase [Clostridium sp. DL-VIII]
gi|357170276|gb|EHI98450.1| methyltransferase [Clostridium sp. DL-VIII]
Length = 183
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +QS P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSTIQSY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA SRG EV+ + P + NV NL++ F +I E +
Sbjct: 55 LGLEAASRGADEVYLFDKSSDTFPLLKQNV--ENLKFQDFCFPMNIDA------YEGLRK 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
K FD + + PPY M I + ++ +D IV + ++ + +
Sbjct: 107 LAAKGKKFDIIFIDPPYCKEMIPEAMKIIKDNEMLKEDGIIVTKIDSIEEIYEGYENIRL 166
Query: 285 IKDRRFGRTHLAIY 298
K +++G T + Y
Sbjct: 167 SKSKKYGNTTVCYY 180
>gi|384135009|ref|YP_005517723.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289094|gb|AEJ43204.1| methyltransferase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 184
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L SP+ VRP + VK + F+++ P L G +DL++GTGS
Sbjct: 1 MRVIAGRWRGILLESPRSQAVRPTTDRVKESMFNLI------PHRLE-GLVIDLFAGTGS 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S FV+ DP + ++ NL+ G +S V V + +F
Sbjct: 54 LGIEALSRGASRAIFVDKDP-RSARLVRRNLDRVG---AASQAEVWVLDWARALRRFESS 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
Y+ V PPY A + ++ + + + G +V E P D+ + G V K R
Sbjct: 110 GDVATYVFVDPPYHADLWIPVLLALPAARVSGA---VVCEAPASLDLPEQVGDFVLQKSR 166
Query: 289 RFGRTHLAIY 298
++G + IY
Sbjct: 167 QYGDIAVRIY 176
>gi|326382848|ref|ZP_08204538.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
gi|326198438|gb|EGD55622.1| methyltransferase [Gordonia neofelifaecis NRRL B-59395]
Length = 181
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L P RP + V+ A F +L G L R LDLY+GTG
Sbjct: 1 MTRIIAGEFRGRRLAVPADT-TRPTSDRVREAVFSML----GSRMDLSEARVLDLYAGTG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG + VE D + VL N+ G I VE+FL
Sbjct: 56 ALGIEAVSRGAASAVLVEADRR-AAGVLRDNVAVCGAAAQVRIVNRSVESFL------AA 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
G FD + + PPY EV A +A++ + +I+VE R+D
Sbjct: 109 PTGTFDLIFLDPPYDISTDEVNRAIAGCAAVLAEGGWILVERGRRSD 155
>gi|160913554|ref|ZP_02076245.1| hypothetical protein EUBDOL_00030 [Eubacterium dolichum DSM 3991]
gi|158434106|gb|EDP12395.1| RNA methyltransferase, RsmD family [Eubacterium dolichum DSM 3991]
Length = 189
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + + +G RP + VK A F + G LDL++G+G+
Sbjct: 7 MRIVAGKFGSRVIQAVEGQTTRPTTDKVKEAIFSRI------GPYFDGGSILDLFAGSGA 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EAISRG V+M+ +S + N++ G D ++ + +T L + E+ +
Sbjct: 61 ISLEAISRGMEHAVLVDMNGKAISTI-TSNIKALGVRDACTVLKMDYKTALHKLEE---Q 116
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVKIKD 287
FD + + PPY ++ + + +V ++ ++ E L+ D+ D G L K+KD
Sbjct: 117 KQSFDVVFLDPPYKKQQISSILQYLDEHDMVKENGDVICE-SLKEDIFEDAVGSLQKVKD 175
Query: 288 RRFGRTHLAIY 298
+G T + Y
Sbjct: 176 VTYGITRITYY 186
>gi|62184779|ref|YP_219564.1| hypothetical protein CAB134 [Chlamydophila abortus S26/3]
gi|62147846|emb|CAH63592.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 187
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 37/180 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG + V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ K+ FD + + PPY D +A + + +VG +LD GCL
Sbjct: 108 AK---KNMSFDLIYIDPPYNLEDS--YLAAVLRDIVVG-------------GILDKHGCL 149
>gi|325678315|ref|ZP_08157941.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
gi|324109995|gb|EGC04185.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
Length = 182
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + + +D RP ++VK A F +Q + + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLEALDTRPTTDMVKEAVFSAIQF------DVAGSQVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR S FV+ +P V V+ N+ F+ S + + +L+ A+
Sbjct: 55 MGIEALSRDASHCVFVDNNPAAV-QVIKENISDCKFVTESRVLNMDSLDYLKVAK----- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY E +A + A + + +V E+ ++ + G L K K
Sbjct: 109 -GQFDIVLLDPPYGKGLIEKALAGL--DAHLSDRAIVVCEHEKELELGEEYGRLRKHKRY 165
Query: 289 RFGRTHLAIY 298
++G+ + I+
Sbjct: 166 KYGKIAVTIF 175
>gi|182684904|ref|YP_001836651.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae CGSP14]
gi|307128169|ref|YP_003880200.1| putative methyltransferase [Streptococcus pneumoniae 670-6B]
gi|418133415|ref|ZP_12770284.1| methyltransferase [Streptococcus pneumoniae GA11304]
gi|182630238|gb|ACB91186.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae CGSP14]
gi|306485231|gb|ADM92100.1| putative methyltransferase [Streptococcus pneumoniae 670-6B]
gi|353804356|gb|EHD84639.1| methyltransferase [Streptococcus pneumoniae GA11304]
Length = 179
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRSLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T + + + E LER
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTKEIGKFQLLKMDAERALERV------ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPYT E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYTK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|339448204|ref|ZP_08651760.1| putative adenine-specific DNA methyltransferase [Lactobacillus
fructivorans KCTC 3543]
Length = 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK +KL G RP + V+ A F+++ G +LDLY+G+G+
Sbjct: 1 MRIISGKFGGRKLKPVPGNKTRPTTDKVREALFNMI------GPYFNGGNFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V +EA+SRG V+ + + N+ + S+ + E+ L + + K
Sbjct: 55 VSLEAVSRGMDHAILVD-KQYAAYKTIQENIAMVSDPNDFSVWKMNAESALTK----LKK 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G FDY+ + PPY + +I+K L+ + ++ E +T+M D IK
Sbjct: 110 EGQSFDYIFLDPPYKKQQMMKQLDEIAKDHLLNNNGMVICETDNQTNMSDDAANYRLIKQ 169
Query: 288 RRFGRTHLAIY 298
+ +G T ++IY
Sbjct: 170 KDYGLTIISIY 180
>gi|386842766|ref|YP_006247824.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103067|gb|AEY91951.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796058|gb|AGF66107.1| DNA methylase [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 195
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERALDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D + ++ N++ G L + + T + E + +A
Sbjct: 59 AVGLEALSRGAGHVLLVEADA-RAARIVRENVKNLG-LPGAEVRTGKAEQVISQA----A 112
Query: 228 KDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ P+D + + PPY D E+L+ S+ L +++ + VE R
Sbjct: 113 PEEPYDLVFLDPPYAVSDDDLREILLTLRSERWLA-EEALVTVERSTRGGEFHWPDGFEA 171
Query: 285 IKDRRFG 291
I+ RR+G
Sbjct: 172 IRSRRYG 178
>gi|405980394|ref|ZP_11038733.1| RsmD family RNA methyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390387|gb|EJZ85456.1| RsmD family RNA methyltransferase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 193
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 108 LLQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A+ + L P KG RP E V+ A F L+ L LDLY+G+
Sbjct: 1 MTRIVAGSAKGRVLKVPAKG--TRPTSERVREALFSRLEHMNVVENCLV----LDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA SRG S V VE + ++ N+ TG + +HT TFL RA F
Sbjct: 55 GALGLEAASRGASRVDLVEKSA-PTARIIAHNIRATGL--KARVHTASATTFL-RARDFE 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G FD + + PPY + +V + D+ +VVE R+ LVK
Sbjct: 111 TLSGEFDLVLLDPPYDVSEEDVAEVLSLLGPWITPDALVVVERSSRSPEPLWPDFLVKED 170
Query: 287 DRRFGRTHLAIYGP 300
R +G T GP
Sbjct: 171 QRTWGETVAWFAGP 184
>gi|145219574|ref|YP_001130283.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
gi|145205738|gb|ABP36781.1| putative methyltransferase [Chlorobium phaeovibrioides DSM 265]
Length = 188
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ G R +K+ + DVRP VK + FD L + + LDL++G GS
Sbjct: 1 MQIIAGAYRGRKIRTTSSQDVRPCSSRVKKSLFDTLLHR----FTFEEAKVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + V FV+ P + ++ E D SI V FL R
Sbjct: 57 LGFEALSRGAASVTFVDRHPESLRSLRETAREL-ALEDQVSIIDEDVPAFLCRYS----- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272
G D + PPY+ DY L+ I + +D F+++E+ R
Sbjct: 111 -GEADLVFCDPPYSWQDYNGLIESIMDEDGLSEDGFLLIEHSAR 153
>gi|354558650|ref|ZP_08977904.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
gi|353545712|gb|EHC15162.1| methyltransferase [Desulfitobacterium metallireducens DSM 15288]
Length = 181
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R +KL + GMD RP + VKGA F++L+ ++ R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRKLKTVSGMDTRPTADKVKGAIFNVLRE------KVQDARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+S+G EV VE + V+ NL G + ++++ FL++
Sbjct: 55 LALEALSQGAQEVVLVE-KAYTAQKVIQENLTLIGEAQ-AKLYSMDAFEFLKQY-----P 107
Query: 229 DGPFDYMSVTPPY 241
+ FD + + PPY
Sbjct: 108 EARFDLIFLDPPY 120
>gi|407458935|ref|YP_006737038.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
gi|405786226|gb|AFS24971.1| hypothetical protein B602_0150 [Chlamydia psittaci M56]
Length = 187
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V F++ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFIDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ K FD + + PPY D + ++ I ++ K ++ +E +L G
Sbjct: 108 AK---KHMSFDLIYIDPPYNLEDSYIAAVLHNIVVGGILDKQGYLFLENASVKPIL-VEG 163
Query: 281 CLVKIKDRRFGRTHLAIY 298
+K + R+ G T+L+ Y
Sbjct: 164 LTLK-RSRKLGGTYLSEY 180
>gi|374854269|dbj|BAL57156.1| methyltransferase small domain superfamily protein [uncultured
prokaryote]
Length = 195
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V G+A+ K+L P+G+ RP + V+ A F+ L + LDL++G G+
Sbjct: 1 MRVAAGEAKGKRLRVPRGVAARPTQDRVREAIFNALAD------RVVDADVLDLFAGVGT 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE+DP + L NL GF + + L R EQ +
Sbjct: 55 LGIEALSRGARRSVFVELDPRAAAG-LRANLHAAGFTGRAEVWRADALRALRRLEQ---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
F + + PPY + + + ++ S ++ D +V E
Sbjct: 111 GDRFHLIFLDPPYRSGWLQRALRALAHSPVLRDDGLVVAE 150
>gi|148239930|ref|YP_001225317.1| N6-adenine-specific methylase [Synechococcus sp. WH 7803]
gi|147848469|emb|CAK24020.1| N6-adenine-specific methylase [Synechococcus sp. WH 7803]
Length = 206
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 22/198 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ +L SP+G RP V+ A ++L L WLDL+SG+G
Sbjct: 6 LRMIGGR----RLRSPQGQGTRPTTARVREALMNMLAGV------LEDAHWLDLFSGSGV 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVRVET--FLE--RA 222
+G EAI RG S V VE + + + + NLE + I +R + +LE R
Sbjct: 56 MGCEAIQRGASRVWAVENNARIAA-ICRQNLELVAASRKEPIEIRVIRKDLMPWLEAGRP 114
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
E PF + V PPY A Y+ + + + D+ ++ E+ D LD
Sbjct: 115 ENVE----PFSLVYVDPPYAAGQYQATLEGLRTRNWLSNDALVICEH-ASHDRLDPPPDW 169
Query: 283 VKIKDRRFGRTHLAIYGP 300
++ RR+G + L P
Sbjct: 170 TEVDRRRYGTSALLFLSP 187
>gi|417644140|ref|ZP_12294157.1| RNA methyltransferase, RsmD family [Staphylococcus warneri VCU121]
gi|445059999|ref|YP_007385403.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
gi|330685099|gb|EGG96765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU121]
gi|443426056|gb|AGC90959.1| hypothetical protein A284_08210 [Staphylococcus warneri SG1]
Length = 180
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGIHKSKALESLEGRNTRPTMDKVKEGIFNSLHEVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + S ++ + L + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLKQLDLISQSEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+ FDY+ + PPY + + I++ L+ ++ I+ E+
Sbjct: 109 EIQFDYIFLDPPYNKGLIDEALKSIAEFNLLKENGIIICEF 149
>gi|319892121|ref|YP_004148996.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|386319597|ref|YP_006015760.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
gi|317161817|gb|ADV05360.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
pseudintermedius HKU10-03]
gi|323464768|gb|ADX76921.1| putative methyltransferase [Staphylococcus pseudintermedius ED99]
Length = 183
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L + +G + RP M+ VK F+ L + G LDL++G+GS
Sbjct: 1 MRVIAGKHKSKSLETLEGRNTRPTMDKVKEGIFNSLHTV--------EGLGLDLFAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL+ + ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNIRAVK-VIQHNLKKLDLTHQAEVYKNNADRALKALNK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272
+ FD + + PPY + + I + L+ ++ IV EY R
Sbjct: 109 EIQFDLIFLDPPYEKGLIDEALKSIHQFDLLKQNGIIVCEYSHR 152
>gi|424824828|ref|ZP_18249815.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
gi|333409927|gb|EGK68914.1| hypothetical protein CAB1_0142 [Chlamydophila abortus LLG]
Length = 187
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 37/180 (20%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C + R+LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSVYVEDARFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG + V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGAASVTFVDSSAQSVRLIRANSQLLHPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ K+ FD + + PPY D +A + + +VG +LD GCL
Sbjct: 108 AK---KNMSFDLIYIDPPYNLEDS--YLAAVLRDIVVG-------------GILDKHGCL 149
>gi|326790887|ref|YP_004308708.1| methyltransferase [Clostridium lentocellum DSM 5427]
gi|326541651|gb|ADZ83510.1| methyltransferase [Clostridium lentocellum DSM 5427]
Length = 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R L +P+GM+ RP + +K F+++ A P +LDL+SG+G+
Sbjct: 1 MRVISGRCRGTHLEAPEGMNTRPTTDRIKETLFNMI--AFDIPEC----EFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG VE D ++ + NLE T + + V L+R E
Sbjct: 55 MAIEALSRGGKRAVLVEKDTKALA-CIEQNLEKTRLKAEAKVVASDVFEALKRLE----- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + ++ ++K + +D +I++E +T ++ LV K++
Sbjct: 109 GEQFDIIFMDPPYALENIQTVLEILAKKKFLKEDGYIILERSTKT-IVKLPQNLVLWKEK 167
Query: 289 RFGRTHLAIYGPD 301
++ T L+ D
Sbjct: 168 QYKTTTLSFIRRD 180
>gi|347755860|ref|YP_004863424.1| RsmD family RNA methyltransferase [Candidatus Chloracidobacterium
thermophilum B]
gi|347588378|gb|AEP12908.1| RNA methyltransferase, RsmD family [Candidatus Chloracidobacterium
thermophilum B]
Length = 183
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L S G+ VRP + ++ F+IL G +LDL +G+G+
Sbjct: 1 MRVIAGIHKGRRLRSEPGLRVRPTSDRLRETLFNILAPRIGDKT------FLDLCAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIEA+SRG + FVE + L+ NL G + + + V+ + + +QF+
Sbjct: 55 VGIEALSRGAARATFVEHSRRALV-ALMENLARCGIGEEAEV--VQRDA-VSAVKQFIQV 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY + Y+ L + L+ +D + +VE+ + +++T G L + +
Sbjct: 111 GRRFDLIFCDPPYASPLYDPLFELLGTQPLLDEDGWFIVEHHAKHAVVETIGDLRRFRAV 170
Query: 289 RFGRTHLAIY 298
+ G + L+ +
Sbjct: 171 QQGESTLSFF 180
>gi|110632790|ref|YP_672998.1| putative methyltransferase [Chelativorans sp. BNC1]
gi|110283774|gb|ABG61833.1| putative methyltransferase [Chelativorans sp. BNC1]
Length = 186
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R ++L SPK +RP + + + F+I++ + P S+ R LD +SG+G+
Sbjct: 1 MRIVGGALRGRQLTSPKSDAIRPTTDRARESLFNIIEHS--YPGSIEGARVLDFFSGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+GIEA+SRG FVE + ++ N+E G R F A Q V
Sbjct: 59 LGIEALSRGAGYCLFVE-EAASARALVRENIESLGLQG-------RTRIFRRDATQLGPV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G PF+ + PPY E+ + + ++ IVVE T G ++ +
Sbjct: 111 GTMQPFNLVFADPPYGRGLGEMAIEAALAGGWLSHEALIVVEESAATPFTAPRGIVIH-E 169
Query: 287 DRRFGRTHLAIYG 299
R + + LA G
Sbjct: 170 TRTYSSSTLAFCG 182
>gi|424888461|ref|ZP_18312064.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174010|gb|EJC74054.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 186
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G PFD + PPY E M + + + V+E R D++ + V +
Sbjct: 111 GNLEPFDVLFADPPYGKGLGEKAMTAAAVGGWLRPGAIAVLEE--RGDIVVSVHPSYVFL 168
Query: 286 KDRRFG--RTHLAIYGP 300
++R FG R H Y P
Sbjct: 169 ENRIFGDTRVHFFRYQP 185
>gi|392960530|ref|ZP_10325998.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|421054713|ref|ZP_15517678.1| methyltransferase [Pelosinus fermentans B4]
gi|421061081|ref|ZP_15523465.1| methyltransferase [Pelosinus fermentans B3]
gi|421063773|ref|ZP_15525719.1| methyltransferase [Pelosinus fermentans A12]
gi|421071576|ref|ZP_15532692.1| methyltransferase [Pelosinus fermentans A11]
gi|392440394|gb|EIW18074.1| methyltransferase [Pelosinus fermentans B4]
gi|392446841|gb|EIW24112.1| methyltransferase [Pelosinus fermentans A11]
gi|392452156|gb|EIW29109.1| methyltransferase [Pelosinus fermentans B3]
gi|392455107|gb|EIW31914.1| methyltransferase [Pelosinus fermentans DSM 17108]
gi|392462343|gb|EIW38438.1| methyltransferase [Pelosinus fermentans A12]
Length = 189
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 10/199 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ KL +P+G+ RP + VK A F+IL + + LD+++GTG+
Sbjct: 1 MRIITGSAKGIKLSAPRGLGTRPTADRVKEAVFNILGDI------VVDAQVLDIFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F++ ++++ N + T + + I V L+R F G
Sbjct: 55 LGLEALSRGASTAVFIDSSIDSITSIK-ENAQRTKLIGQAEILKNDVIRALDR---FAGI 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY + ++ +I +++V + +V+E+ ++ + L +
Sbjct: 111 GRSFDLIFCDPPYNKGFVQKVLEKIETNSIVNPEGILVIEHSKHEEITNQWDHLQLRRVE 170
Query: 289 RFGRTHLAIYGPDWAQKKR 307
++G T ++ + Q+ R
Sbjct: 171 KYGETLISFLLYNTNQEVR 189
>gi|420263405|ref|ZP_14766043.1| rna family [Enterococcus sp. C1]
gi|394769693|gb|EJF49538.1| rna family [Enterococcus sp. C1]
Length = 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L S G + RP + VKGA F++L L G LDL+SG+G
Sbjct: 1 MRVVAGEYGGRRLKSLAGDNTRPTTDKVKGAIFNMLGQ------YLDGGVVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ IEA+SRG + H V +D + + V+ N+ T + ++ + L QF
Sbjct: 55 LAIEAVSRGAN--HAVCVDRSFPATKVIRENIAITKEPEKFTVLKMDANQALR---QFAA 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FDY+ + PPY + + + K L+ +++V E D+ + G L ++
Sbjct: 110 EGQSFDYLFLDPPYAKQEILHQLEAMLKDELIRPSAYVVCETDKSIDLPEQIGSLHSVRA 169
Query: 288 RRFGRTHLAIY 298
+ +G + + IY
Sbjct: 170 QTYGISAVTIY 180
>gi|302542238|ref|ZP_07294580.1| RsmD family RNA methyltransferase [Streptomyces hygroscopicus ATCC
53653]
gi|302459856|gb|EFL22949.1| RsmD family RNA methyltransferase [Streptomyces himastatinicus ATCC
53653]
Length = 195
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F +S G SL R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGNGTRPTSDRAREGLFSTWESLLG---SLSGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE DP + +V ++ E +AE +G
Sbjct: 58 AVGLEALSRGAAHVLLVESDPRAARTIRE---------NVRALGLPGAELRTGKAEATIG 108
Query: 228 KD----GPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
GP+D + + PPY D E+L+ K L D+ VE R
Sbjct: 109 GQPPATGPYDVVFLDPPYVVSDDDLREILLTLRGKGWLA-PDALATVERSTRGGEFGWPA 167
Query: 281 CLVKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 168 GFEGLRSRRYGEGTL 182
>gi|429505054|ref|YP_007186238.1| hypothetical protein B938_07720 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486644|gb|AFZ90568.1| hypothetical protein B938_07720 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVISGSRKGRALKAVPGTSTRPTTDKVKESIFNMIGP------YFDGGTGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V N++ L + ++ E L A + +
Sbjct: 55 LGIEALSRGFDRCIFVDRDFKAIQTVK-ANIKALDLLSSAEVYRNDAERALYAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + L+ I + ++ +D F+V E+ + + G L +
Sbjct: 111 EKGFDGIFLDPPYKEQKLKALIEMIDEQNMLNEDGFVVAEHDKAVALPEAVGALTVTRRE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|220931856|ref|YP_002508764.1| putative methyltransferase [Halothermothrix orenii H 168]
gi|219993166|gb|ACL69769.1| putative methyltransferase [Halothermothrix orenii H 168]
Length = 178
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR ++L S +G RP + VK A F+IL S+ LDL++G GS
Sbjct: 1 MRIISGIARGRRLKSIRGSGTRPTTDRVKEALFNILGQ------SVIETDVLDLFAGFGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE + V NV+ N++ GF +++ + V T+L G
Sbjct: 55 LGLEALSRGANSAVFVEKNYRNV-NVINDNIKLCGFEELADVVKKDVFTYLRET----GS 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY + I ++ + IV+E+ +++ T L I +R
Sbjct: 110 D--FDVIFMDPPYHKKLANKAVGLIVAGRIIREQGLIVIEHHPGEEII-TPEELDLITNR 166
Query: 289 RFGRTHLAI 297
+G++ + I
Sbjct: 167 EYGKSGITI 175
>gi|329942454|ref|ZP_08291264.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|332287094|ref|YP_004421995.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|384450235|ref|YP_005662835.1| Methylase [Chlamydophila psittaci 6BC]
gi|384451241|ref|YP_005663839.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|384452217|ref|YP_005664814.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|384453191|ref|YP_005665787.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|384454169|ref|YP_005666764.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|392376347|ref|YP_004064125.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|406593064|ref|YP_006740243.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|407453622|ref|YP_006732730.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|407454957|ref|YP_006733848.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|407456323|ref|YP_006734896.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|407457689|ref|YP_006735994.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|407460307|ref|YP_006738082.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|449070780|ref|YP_007437860.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
gi|313847690|emb|CBY16678.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|325507367|gb|ADZ19005.1| RNA methyltransferase [Chlamydophila psittaci 6BC]
gi|328815364|gb|EGF85352.1| hypothetical protein G5Q_0146 [Chlamydophila psittaci Cal10]
gi|328914329|gb|AEB55162.1| Methylase [Chlamydophila psittaci 6BC]
gi|334691972|gb|AEG85191.1| RNA methyltransferase [Chlamydophila psittaci C19/98]
gi|334692951|gb|AEG86169.1| RNA methyltransferase [Chlamydophila psittaci 01DC11]
gi|334693926|gb|AEG87143.1| RNA methyltransferase [Chlamydophila psittaci 02DC15]
gi|334694906|gb|AEG88122.1| RNA methyltransferase [Chlamydophila psittaci 08DC60]
gi|405780381|gb|AFS19131.1| hypothetical protein B595_0155 [Chlamydia psittaci 84/55]
gi|405781500|gb|AFS20249.1| hypothetical protein B598_0154 [Chlamydia psittaci GR9]
gi|405783584|gb|AFS22331.1| hypothetical protein B600_0161 [Chlamydia psittaci VS225]
gi|405785227|gb|AFS23973.1| hypothetical protein B601_0151 [Chlamydia psittaci WS/RT/E30]
gi|405787290|gb|AFS26034.1| hypothetical protein B603_0153 [Chlamydia psittaci WC]
gi|405788936|gb|AFS27678.1| hypothetical protein B712_0152 [Chlamydia psittaci NJ1]
gi|449039288|gb|AGE74712.1| hypothetical protein AO9_00705 [Chlamydophila psittaci Mat116]
Length = 187
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L + VRP VVK A F+I C A + +LDL++G GS
Sbjct: 1 MKILAGKYKGKSLKTFSNPSVRPTCGVVKEAVFNI------CSAYVEDAIFLDLFAGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L PNL T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLNPNLPIT-------IIKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ K FD + + PPY D + ++ I ++ K ++ +E +L G
Sbjct: 108 AK---KHMSFDLIYIDPPYNLEDSYIAAVLRDIVVGGILDKHGYVFLENASVEPIL-VEG 163
Query: 281 CLVKIKDRRFGRTHLAIY 298
+K + R+ G T+L+ Y
Sbjct: 164 LTLK-RSRKLGGTYLSEY 180
>gi|225378032|ref|ZP_03755253.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
gi|225210033|gb|EEG92387.1| hypothetical protein ROSEINA2194_03692 [Roseburia inulinivorans DSM
16841]
Length = 168
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 15/179 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++++ G AR L + +GMD RP + +K F++LQ+ GC +LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGMDTRPTTDRIKETLFNMLQNDVPGC-------YFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG FVE + + + N+ +T F + + V + + E G
Sbjct: 54 QIGLEAVSRGARYAVFVENNKKACA-CIEDNIHFTKFDRETKLLQSDVISAIRSME---G 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DMLDTCGCLVK 284
K FD + + PPY + ++ + S+++ +D+ IVVE L T D L+ G +K
Sbjct: 110 K-YRFDVIFMDPPYRHEYEKEVLECLKDSSILKEDTLIVVEASLDTSFDYLNELGFTLK 167
>gi|271969201|ref|YP_003343397.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270512376|gb|ACZ90654.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 189
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G A ++L P G RP + + I + G SL R LDLY+G+G+V
Sbjct: 3 RVIAGSAGGRRLAVPPGRGTRPTSDRAREG---IFSTVGSLLGSLDGARVLDLYAGSGAV 59
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
G+EA+SRG VE D + I L G L + RVE LER G
Sbjct: 60 GLEALSRGAVHALLVESDAKAARTIRANIATLGLPGAL----LAADRVERVLER-----G 110
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVE 268
+ P+D + PPY D V ++ Q+ + +D+ + VE
Sbjct: 111 TEEPYDLVFADPPYAVTDEAVDAVLGQLRDHGWLAEDALVAVE 153
>gi|335029437|ref|ZP_08522944.1| RNA methyltransferase, RsmD family [Streptococcus infantis SK1076]
gi|334268734|gb|EGL87166.1| RNA methyltransferase, RsmD family [Streptococcus infantis SK1076]
Length = 179
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLDGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D N++ N+ T + S +++E+ RA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRR-AQNIVAENIRMTK--ETSKFQLLKMES--SRALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
DG FD + + PPY E +++ I K A L KD +V E ++ + CL
Sbjct: 108 DGVFDLIFLDPPYAK---EQIVSDIEKMAERDLFSKDVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|296270744|ref|YP_003653376.1| methyltransferase [Thermobispora bispora DSM 43833]
gi|296093531|gb|ADG89483.1| methyltransferase [Thermobispora bispora DSM 43833]
Length = 189
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A+ ++L P G D RP + + F + S G +L R LDLY+G+G
Sbjct: 1 MTRVIAGLAKGRRLTVPPGKDTRPTSDRAREGLFATVLSVLG---TLEGVRVLDLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--AEQF 225
+VG+EA+SRG V VE DP + + N+E G L + + +VE + R AE
Sbjct: 58 AVGLEALSRGAEHVLLVEADP-RAARAIRANIEAVG-LPGAVLRQEKVERLVRRRCAE-- 113
Query: 226 VGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+ ++ PPY+ D EVL+A L G + + VE R L+
Sbjct: 114 -----PYGFVYADPPYSLPDEQVIEVLIALRDNGWLAG-GALVAVERESRGKDLEWPPGF 167
Query: 283 VKIKDRRFG 291
V + RR+G
Sbjct: 168 VADRVRRYG 176
>gi|332298023|ref|YP_004439945.1| methyltransferase [Treponema brennaborense DSM 12168]
gi|332181126|gb|AEE16814.1| methyltransferase [Treponema brennaborense DSM 12168]
Length = 184
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG+ R + + P G+ +RP M+ ++ + F IL G +LDL+SG+G+
Sbjct: 1 MRITGGELRGRIIKCPDGV-IRPAMDRMRESVFAILGDLSG-------KSFLDLFSGSGT 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+ IEA SRG + V VE D V+SNV + E + S H + VE F++R +
Sbjct: 53 IAIEAASRGAAHVELVEKDRIKTDTVLSNVSVTEKELGKKI---SCHFMAVELFMKRCKS 109
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + PP+ + L+ ++ L+ I++ P + D +
Sbjct: 110 ------QFDLIFCDPPFPYKFHRDLIEIAAERNLLTPGGIIMIHRPAEKPLPDAIRQFER 163
Query: 285 IKDRRFGRTHLAIY 298
R +GR+ + Y
Sbjct: 164 FDQREYGRSIVDFY 177
>gi|195941937|ref|ZP_03087319.1| hypothetical protein Bbur8_03561 [Borrelia burgdorferi 80a]
gi|387827122|ref|YP_005806404.1| putative methyltransferase [Borrelia burgdorferi N40]
gi|312149513|gb|ADQ29584.1| putative methyltransferase [Borrelia burgdorferi N40]
Length = 165
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + ++LD+++GTG + +EA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGIMSVEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + L+ N + G + F +RAE F+ KD +D++ + PP
Sbjct: 55 HLVECNRK-IKITLVENFSFVGEF---------YKFFFQRAEDFLSKKDLFYDFIYLDPP 104
Query: 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299
+ + L+ I K ++ I++ YP D+ +I +F +L YG
Sbjct: 105 FNYKNKINLLEIILKGKILNDKVSIIMHYPSNEDL--------EINTSKFSVYNLKRYG 155
>gi|417793688|ref|ZP_12440960.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK255]
gi|334272343|gb|EGL90709.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK255]
Length = 179
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVTANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 TGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|294631618|ref|ZP_06710178.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
gi|292834951|gb|EFF93300.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
Length = 195
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D + ++ N V S+ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADA-RAARIVREN--------VKSLGLPGAEVRTGKAEQIVQ 109
Query: 228 K---DGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
GP+D + + PPY D E+L+ S+ L ++ + VE R
Sbjct: 110 SPPPAGPYDIVFLDPPYAVTDDDLREILLTLRSQGWLA-TEALVTVERSTRGGEFGWPEG 168
Query: 282 LVKIKDRRFG 291
++ RR+G
Sbjct: 169 FDALRARRYG 178
>gi|47565804|ref|ZP_00236843.1| methyltransferase, putative [Bacillus cereus G9241]
gi|228987074|ref|ZP_04147199.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157508|ref|ZP_04285585.1| Methyltransferase [Bacillus cereus ATCC 4342]
gi|47557084|gb|EAL15413.1| methyltransferase, putative [Bacillus cereus G9241]
gi|228625958|gb|EEK82708.1| Methyltransferase [Bacillus cereus ATCC 4342]
gi|228772668|gb|EEM21109.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 188
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMI------GPYFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + V+ NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIK-VIHQNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F+ + + PPY L++ + + L+ D I+ E+ + ++ G LVK++
Sbjct: 111 EISFNLILIDPPYKDQKIISLISVMDQHGLLHNDGLIMAEHGNDVVLPESIGRLVKVRAE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 NYGITAISIY 180
>gi|421489456|ref|ZP_15936836.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK304]
gi|400365693|gb|EJP18743.1| RNA methyltransferase, RsmD family [Streptococcus oralis SK304]
Length = 179
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRR-AQAIVAANIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L + +V E ++ + CL
Sbjct: 108 TGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSDEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|254784499|ref|YP_003071927.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
gi|237685959|gb|ACR13223.1| 16S rRNA m2G966 methyltransferase [Teredinibacter turnerae T7901]
Length = 191
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 98 KSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG 157
+ Q + + L+++GG+ R +KL +RP + V+ F+ L A PG
Sbjct: 2 QRQSKNSQKSSLRIIGGQWRGRKLSIADAEGLRPTGDRVRETLFNWL-------APWLPG 54
Query: 158 -RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
R LDL++GTG++G+EA+SRG + F+E +P + + E LD +R +
Sbjct: 55 ARCLDLFAGTGALGLEALSRGAAHTTFIETNPHAAATL----CEHLNTLDCKQADVLRND 110
Query: 217 --TFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274
+L A P+D + V PP+ +E + I + A+ + + +E P+
Sbjct: 111 GIAWLNSAAH-----TPYDIIFVDPPFAKDLWEQALTSIERCAVASAQALVYIETPV-DH 164
Query: 275 MLDTCGCLVKIKDRRFGRTHLAIY 298
L+T +K + G+ ++
Sbjct: 165 ALNTPPNWQPLKSKTAGKVRFGLW 188
>gi|91202800|emb|CAJ72439.1| similar to protein relase factor 2 methylase (HemK) [Candidatus
Kuenenia stuttgartiensis]
Length = 198
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 22/143 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP-GRWLDLYSGTG 167
++V+ G A+ L SPKG RP+ + VK + F+IL A + P R LDLY+GTG
Sbjct: 1 MRVIAGSAKGILLCSPKGNKTRPIPDNVKESLFNIL-------AEIIPDSRVLDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-----FLERA 222
+VGIEA+SRG FVE + + ++ N+ T L+ S TVR + FLE+
Sbjct: 54 AVGIEALSRGAKSCLFVENGTFAIQSIK-KNISATKLLNKSV--TVRCDVLKTIPFLEQ- 109
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD 245
DG D + PPY D
Sbjct: 110 ----NTDG-IDIVFACPPYPLAD 127
>gi|405351368|ref|ZP_11022851.1| Ribosomal RNA small subunit methyltransferase D [Chondromyces
apiculatus DSM 436]
gi|397093259|gb|EJJ23982.1| Ribosomal RNA small subunit methyltransferase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 185
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 18/195 (9%)
Query: 109 LQVLGGKARRKKLLSPKGM--DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G + + L PK +RP + V+ F++L L R LDLY+GT
Sbjct: 1 MRIVAGTVKGRALAGPKSTSRHIRPTADRVRETLFNVLGQ------FLDGQRVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVR-VETFLERAE 223
G++G+EA+SRG + V+ D + + +L G +++ + R +ET R E
Sbjct: 55 GALGLEAVSRGAGQAVLVDQDREALGLCRQNVDSLGLAGQVEIVAAPVSRALETLKRRGE 114
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ ++ + PPY A E ++ I + L+ +VVE+ R D L
Sbjct: 115 R-------YELIFADPPYAAHVVETVLDGIMAAGLLAPSGMVVVEHDKREAAPDAHAGLN 167
Query: 284 KIKDRRFGRTHLAIY 298
+ RRFG T ++ Y
Sbjct: 168 REDQRRFGDTLVSFY 182
>gi|218507749|ref|ZP_03505627.1| putative methylase protein [Rhizobium etli Brasil 5]
Length = 180
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHA--YPGCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG-CLVKI 285
G FD + PPY E MA ++ + + V+E R D++ + V +
Sbjct: 111 GNLEAFDVLFADPPYGKGLGEKAMAAAAQGGWLRPGAIAVLEE--RADVVVSVHPSYVFL 168
Query: 286 KDRRFGRTHL 295
+ R FG T +
Sbjct: 169 ESRIFGDTRV 178
>gi|94986727|ref|YP_594660.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|442555552|ref|YP_007365377.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
gi|94730976|emb|CAJ54339.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
gi|441492999|gb|AGC49693.1| RsmD family RNA methylase [Lawsonia intracellularis N343]
Length = 190
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 10/192 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R + L + +G RP V+ A F +L S G LDL++G+GS
Sbjct: 1 MRIMTGSLRGRILKTIEGDGYRPATGKVREALFSMLTSRG---IVWDQTYILDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EAISRG +EV F+E +P V L N+E + S+ V FL + F
Sbjct: 58 LGFEAISRGAAEVCFIENNPKAV-QCLYKNIEKLRLFEQVSVVEQDVIQFLNQDSLF--- 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV--VEYPLRTDMLDTCGCLVKIK 286
+ + + PPY E ++ + + + + +I+ VE LR + L +
Sbjct: 114 -KLYQLVFIDPPYGGNRLETTISCVVEKGWIAPEGYIIAEVETTLRINFFQLHPQLELLS 172
Query: 287 DRRFGRTHLAIY 298
+R +G+T L I+
Sbjct: 173 NRSYGQTRLLIW 184
>gi|302389604|ref|YP_003825425.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
gi|302200232|gb|ADL07802.1| methyltransferase [Thermosediminibacter oceani DSM 16646]
Length = 184
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 101/192 (52%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL--QSAGGCPASLRPGRWLDLYSGT 166
++V GG R +++ S G+ RP ++V+ + F+IL ++AG +LD+++GT
Sbjct: 1 MRVTGGIFRGRRIKSLPGIKTRPTSDIVRESLFNILGEKTAGSS--------FLDVFAGT 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRG V F+E + + ++ NL L +S + +L+
Sbjct: 53 GSVGIEALSRGAERVVFIE-EGGLACRIIRENLIK---LRISDKSLIIKADYLKGMRSLE 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FD + + PPY + ++ S L+ +S +VV++ + ++++ T + K
Sbjct: 109 KTNTTFDIIFLDPPYDRGFVSPCLEFLNNSELLKPNSIVVVQHSV-SEVIKTPPNITCYK 167
Query: 287 DRRFGRTHLAIY 298
++++G T L+ +
Sbjct: 168 EKKYGITKLSFF 179
>gi|427723432|ref|YP_007070709.1| methyltransferase [Leptolyngbya sp. PCC 7376]
gi|427355152|gb|AFY37875.1| methyltransferase [Leptolyngbya sp. PCC 7376]
Length = 182
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 130 RPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
RP + V+ A F+I Q GC RWLDL +G+GS+G EA+ RG + +E +P
Sbjct: 18 RPTLAKVREAIFNIWQGQVQGC-------RWLDLCAGSGSMGAEALCRGAVQAVGIEKNP 70
Query: 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV 248
I N W V L+R E G FD + PPY A Y+
Sbjct: 71 RACR---IINENWEKVAKDDQTFQVLKGDVLKRMESLGGD--RFDLIYFDPPYAAKFYQP 125
Query: 249 LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
++ ++ L+ + + VEY + L K KD+ +G+T +A Y
Sbjct: 126 VLEKVIALDLLNSNGEMAVEYDPKLWQPIELEGLEKFKDKNYGKTAIAFY 175
>gi|414159198|ref|ZP_11415488.1| RsmD family RNA methyltransferase [Streptococcus sp. F0441]
gi|410868195|gb|EKS16163.1| RsmD family RNA methyltransferase [Streptococcus sp. F0441]
Length = 179
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKMTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|381182793|ref|ZP_09891579.1| methyltransferase, putative [Listeriaceae bacterium TTU M1-001]
gi|380317323|gb|EIA20656.1| methyltransferase, putative [Listeriaceae bacterium TTU M1-001]
Length = 184
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 16/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + +K + F I+ + LDL++G+G
Sbjct: 1 MRVIAGSKKGHALKAVPGKSTRPTTDKIKESLFSIIGP------FFDGEKVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH---TVRVETFLERAEQF 225
+GIE++SRG E F++ + + NL D +S++ +R L++ E
Sbjct: 55 LGIESLSRGAGEAVFIDQASVAIKTIK-ENLAACHLEDQASVYRNDAMRALKILQKNEAV 113
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
FD + + PPY E ++ + + LV + +V EY + D CG KI
Sbjct: 114 ------FDLVFLDPPYKKQQLEKILLFLDGAGLVADGARVVCEYEKGDFLPDICGRFKKI 167
Query: 286 KDRRFGRTHLAIY 298
K+ +G T L+I+
Sbjct: 168 KEAHYGITVLSIF 180
>gi|322375837|ref|ZP_08050348.1| RNA methyltransferase, RsmD family [Streptococcus sp. C300]
gi|321279105|gb|EFX56147.1| RNA methyltransferase, RsmD family [Streptococcus sp. C300]
Length = 179
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T + S +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EASKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|375362148|ref|YP_005130187.1| methyltransferase [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731829|ref|ZP_16170952.1| methyltransferase, putative [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347128|ref|YP_007445759.1| methyltransferase [Bacillus amyloliquefaciens IT-45]
gi|371568142|emb|CCF04992.1| methyltransferase, putative [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407074042|gb|EKE47032.1| methyltransferase, putative [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850886|gb|AGF27878.1| methyltransferase [Bacillus amyloliquefaciens IT-45]
Length = 184
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVISGSRKGRALKAVPGTSTRPTTDKVKESIFNMIGP------YFDGGTGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V N++ L S ++ E L A + +
Sbjct: 55 LGIEALSRGFDRCIFVDRDFKAIQTVK-ANIKALDLLSSSEVYRNDAERALYAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + L+ I + ++ +D F+V E+ + + G L +
Sbjct: 111 EKGFDGIFLDPPYKEQKLKALIEMIDEQNMLNEDGFVVAEHDKAVVLPEAVGALSVTRRE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|406576776|ref|ZP_11052401.1| methyltransferase, putative [Streptococcus sp. GMD6S]
gi|419817049|ref|ZP_14341219.1| methyltransferase, putative [Streptococcus sp. GMD4S]
gi|404460741|gb|EKA06985.1| methyltransferase, putative [Streptococcus sp. GMD6S]
gi|404466435|gb|EKA11771.1| methyltransferase, putative [Streptococcus sp. GMD4S]
Length = 179
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T + S +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EASKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|399041866|ref|ZP_10736795.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
gi|398059729|gb|EJL51573.1| RNA methyltransferase, RsmD family [Rhizobium sp. CF122]
Length = 186
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK +D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSIDIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRGLLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GNLEPFQMLFADPPY 125
>gi|288553186|ref|YP_003425121.1| methyltransferase [Bacillus pseudofirmus OF4]
gi|288544346|gb|ADC48229.1| methyltransferase [Bacillus pseudofirmus OF4]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + + + G+ RP + VK + F+++ G LDLY+G+G
Sbjct: 1 MRVISGEKKGLSIKAVPGVSTRPTTDKVKESIFNMI------GPYFNGGLALDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SRG +V FV+ D V + NL+ G + ++ + L + + +
Sbjct: 55 LGIESLSRGVEKVIFVDQDRKAVQTIK-ENLKQCGLSEQGEVYRNDSDRAL---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F + + PPY ++ IS L+ K+ IV E+ + +M D L I+
Sbjct: 111 ELAFSLIFLDPPYAKQKLSSDISIISDHGLLEKEGMIVCEHDAKVEMPDKINELTLIRAE 170
Query: 289 RFGRTHLAIYGPD 301
+G T + I+ D
Sbjct: 171 TYGDTTITIFEYD 183
>gi|313114873|ref|ZP_07800372.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622823|gb|EFQ06279.1| RNA methyltransferase, RsmD family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 222
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR + L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 28 MRVIAGEARGRSLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 81
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L +
Sbjct: 82 QLGIEALSRGAARCVFLDENREAV-NIIMRNCKACGVFDRSRVNIGEAARYLSACRE--- 137
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ E ++ + K G ++ E + G L K
Sbjct: 138 ---QFDIVLLDPPFRNGTLEKILPAVDKCTAPG--GIVLCESETGIVLPAEAGGLTLKKQ 192
Query: 288 RRFGRTHLAIY 298
++GR L Y
Sbjct: 193 YKYGRVLLWKY 203
>gi|150395642|ref|YP_001326109.1| putative methyltransferase [Sinorhizobium medicae WSM419]
gi|150027157|gb|ABR59274.1| putative methyltransferase [Sinorhizobium medicae WSM419]
Length = 186
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK D+RP + + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPKSNDIRPTTDRTRESLFNILGHA--YPEVLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG EA+SRGC +V FVE +L N+E G R + F A V
Sbjct: 59 VGFEALSRGCRQVLFVEQGVE-GRGLLRVNIEALGLQG-------RAKIFRRDATDLGPV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GTMEPFHLVFADPPY 125
>gi|428207621|ref|YP_007091974.1| methyltransferase [Chroococcidiopsis thermalis PCC 7203]
gi|428009542|gb|AFY88105.1| methyltransferase [Chroococcidiopsis thermalis PCC 7203]
Length = 191
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 23/200 (11%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
++L S G D RP V+ A F+I Q + RWLDL +GTGS+G EA+ RG
Sbjct: 9 RQLKSLPGKDTRPTSGRVREAVFNIWQ------GKIANCRWLDLCAGTGSMGAEALCRGA 62
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
S V +E NV+ N W V +++ + VG+ FD +
Sbjct: 63 SCVVGIEQSN-RACNVIQQN--WQKITKPEQQFQVLRGDVVQKLKTLVGQQ--FDRIYFD 117
Query: 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEY------PLRTDMLDTCGCLVKIKDRRFGR 292
PPY + Y+ ++ I++ L+ + + VEY P L+ C + + +G
Sbjct: 118 PPYASGLYQPILEAIARYHLLHPEGELAVEYDSALWQPQAISSLEIC------RQKVYGN 171
Query: 293 THLAIYGPDWAQKKRKSEKK 312
T L Y + R+SE+K
Sbjct: 172 TTLTFYTRESGVGSRESEEK 191
>gi|374621062|ref|ZP_09693596.1| 16S rRNA m(2)G-966 methyltransferase [gamma proteobacterium HIMB55]
gi|374304289|gb|EHQ58473.1| 16S rRNA m(2)G-966 methyltransferase [gamma proteobacterium HIMB55]
Length = 189
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 24/193 (12%)
Query: 103 RTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDL 162
R + ++++GG+ R +KL P +RP + V+ F+ L AG S R LD+
Sbjct: 7 RHSANQVRIIGGQWRGRKLSFPDADGLRPTADRVRETLFNWL--AGHIAGS----RCLDM 60
Query: 163 YSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
++G+G++G EA+SRG S FV+ + V+ + N E T + E A
Sbjct: 61 FAGSGALGFEALSRGASHCCFVDQNTAVLKQIQ-ANCELL-------YATAKSEFLFADA 112
Query: 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE----YPLRTDMLDT 278
+ + FD + + PP+ E + + KS L+ DS I +E P R + LD
Sbjct: 113 SKPIDVADTFDIVFLDPPFKGPALEACLDWLLKSPLLKSDSLIYIETAKNAPWRNEALDI 172
Query: 279 CGCLVKIKDRRFG 291
IKD++ G
Sbjct: 173 ------IKDKQAG 179
>gi|291533323|emb|CBL06436.1| RNA methyltransferase, RsmD family [Megamonas hypermegale ART12/1]
Length = 190
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 11/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR KL +PKG + RP + +K + F+IL S + LDL+SGTG+
Sbjct: 1 MRIITGSARGAKLKAPKGQNTRPTADRIKESLFNILGSF------IYDKNVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ +S + N T +D S+I ++ + F ++ K
Sbjct: 55 LSLEALSRGANHAIMVDCSLDSISTIKF-NATHTKLIDKSTI--LKADVF-ATIKKLHLK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY ++ + + L+ +D I++E+ + + ++++
Sbjct: 111 QTKFDIIFCDPPYHQDLCLKVLQMLHEYPLLTEDGIIIMEHAIEDKLPSDFHQYTLLRNQ 170
Query: 289 RFGR-THLAIY 298
++G T ++IY
Sbjct: 171 KYGSTTQISIY 181
>gi|23464929|ref|NP_695532.1| hypothetical protein BL0328 [Bifidobacterium longum NCC2705]
gi|23325523|gb|AAN24168.1| hypothetical protein with possible methylase domain
[Bifidobacterium longum NCC2705]
Length = 206
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 22/198 (11%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ ++V+ G+ + L +PK RP + K A F L S G L R LDL++GT
Sbjct: 2 KAMRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGT 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLE 220
G++GIEA+SRG E+ VE + + L N W L + ++
Sbjct: 57 GALGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVK 108
Query: 221 RAEQFVGKDG-PFDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
+AEQ G G PFD + + PPY + L++ ++ + +++ I++E +R+D
Sbjct: 109 KAEQVAGGFGEPFDVIFIDPPYAYETAECNQLLSDLAAGSATNENTVIMLERSVRSDDPT 168
Query: 278 TCGCLVKIKDRRFGRTHL 295
G + R +G T +
Sbjct: 169 APGGWQITESRNYGETAV 186
>gi|306824478|ref|ZP_07457824.1| probable methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304433265|gb|EFM36235.1| probable methyltransferase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 179
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFDGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEITCLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|345513421|ref|ZP_08792942.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
gi|229437428|gb|EEO47505.1| hypothetical protein BSEG_03646 [Bacteroides dorei 5_1_36/D4]
Length = 186
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+F+ K FD++ PPYT D E + +I +S ++ +D +V+E+
Sbjct: 105 RFIDKCSEQFDFIFADPPYTLKDLESIPTRIFESGILKEDGLLVLEH 151
>gi|138894633|ref|YP_001125086.1| methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196247758|ref|ZP_03146460.1| methyltransferase [Geobacillus sp. G11MC16]
gi|134266146|gb|ABO66341.1| Methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196212542|gb|EDY07299.1| methyltransferase [Geobacillus sp. G11MC16]
Length = 202
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + GM RP + VK A F+++ G LDL++G+G
Sbjct: 1 MRVISGMCKGRHLQAVPGMSTRPTTDKVKEAIFNMIGP------YFTDGIGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V FV+ D V V N+ G + I+ RA + V K
Sbjct: 55 LGIEALSRGLERVIFVDHDTKAVQTVR-KNVAACGLEKRAEIY----RNDAGRALKAVAK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G F + + PPY + L++ I + L+ + +V E+ ++ + G L + K
Sbjct: 110 RGLRFSVIFLDPPYKEKKWLTLLSFIVEHGLLKANGVVVAEHLAEVELPEEVGNLKQWKR 169
Query: 288 RRFGRTHLAIY 298
+G T + IY
Sbjct: 170 ETYGITGITIY 180
>gi|357058552|ref|ZP_09119402.1| RsmD family RNA methyltransferase [Selenomonas infelix ATCC 43532]
gi|355373687|gb|EHG20998.1| RsmD family RNA methyltransferase [Selenomonas infelix ATCC 43532]
Length = 184
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L SP G RP + + A F +L A + + LDL++GTG+
Sbjct: 1 MRIITGSARGVRLKSPAGDGTRPTADRTREALFSML------GARVYDAQVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ + + L N+ T D + I V + + +
Sbjct: 55 LALEALSRGAASAVLVDRTTYAI---LQENVRRTKMEDCAEIRRGDVYDHV----VVLAR 107
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G FD + PPY ++A + + L+ D V+E +++ G L +++
Sbjct: 108 EGHAFDLIFADPPYACGANVRVLAAVDAATLLSADGLFVLEQGAGETIIEHSGSLSLVRE 167
Query: 288 RRFGRTHLAIYGPD 301
RR+G + Y +
Sbjct: 168 RRYGAARICFYAEE 181
>gi|295104207|emb|CBL01751.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
SL3/3]
Length = 191
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 16/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ VS +++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ E ++ + K V ++ E + + G L K
Sbjct: 111 ---QFDLVLLDPPFRGGTLEKILPAVEKC--VAPGGIVLCESEIGIVLPAQVGSLTLQKQ 165
Query: 288 RRFGRTHLAIY 298
++G+ L Y
Sbjct: 166 YKYGKVLLWKY 176
>gi|226313227|ref|YP_002773121.1| hypothetical protein BBR47_36400 [Brevibacillus brevis NBRC 100599]
gi|226096175|dbj|BAH44617.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 188
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R ++L + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVIAGEHRGRRLAAVPGKGTRPTTDKVKESIFNMI-------GPYFDGGWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG FVE D + V+ N+ D + ++ + E +
Sbjct: 54 GLGIEALSRGADRAVFVERDQKAFA-VVKENVSTCRLDDYAELYRMDAERAI---RTLST 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY + + + ++ ++IV E+ + D G VK +
Sbjct: 110 RNQKFDLVFLDPPYAQQKIVEEIEMLQELGMLADGAWIVAEHDIADSFPDAIGHCVKDRA 169
Query: 288 RRFGRTHLAIYGPD 301
++G T + +Y D
Sbjct: 170 AKYGDTAVTVYYYD 183
>gi|78213464|ref|YP_382243.1| hypothetical protein Syncc9605_1947 [Synechococcus sp. CC9605]
gi|78197923|gb|ABB35688.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 206
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 113 GGKARR---KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
GG+ R ++LLSP G RP V+ A +IL L+ RWLDL SG+G +
Sbjct: 4 GGQLRLSGGRRLLSPGGRTARPTTSRVREAVMNILA------PHLQDCRWLDLCSGSGVM 57
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE--QFVG 227
G EA+ RG V V++DP + I NL V++ + E ER E ++
Sbjct: 58 GCEALQRGARCVVAVDLDPQCIRVSRI-NLS-----AVAASRSPAPEIRTERRELITWLR 111
Query: 228 KDG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
KD PFD + PPY YE + +++ + +DS +V E+ R+++ G
Sbjct: 112 KDWNQEPFDIVYFDPPYDQGLYEPCLIALAEGNWLHQDSLVVCEH--RSNLNPEPGSGWT 169
Query: 285 IKD-RRFGRTHLAIYGP 300
+ D RR+G + + + P
Sbjct: 170 VVDQRRYGISSVMMLSP 186
>gi|295102282|emb|CBK99827.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
L2-6]
Length = 190
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G D+ RP ++ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDITRPTLDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ E ++ + K V ++ E + + G L K
Sbjct: 111 ---QFDLVLLDPPFHNGTLENILPIVDKC--VAPGGIVICESETKLVLPAEVGGLQLKKQ 165
Query: 288 RRFGRTHLAIY 298
++G+ L Y
Sbjct: 166 YKYGKVLLWKY 176
>gi|358465588|ref|ZP_09175524.1| RNA methyltransferase, RsmD family [Streptococcus sp. oral taxon
058 str. F0407]
gi|357065397|gb|EHI75608.1| RNA methyltransferase, RsmD family [Streptococcus sp. oral taxon
058 str. F0407]
Length = 179
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D V+ N++ T +VS +++E +RA + VG
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAVIAENIQMTK--EVSKFQLLKMEA--DRALEQVG- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 109 -GTFDLVFLDPPYAK---EQIVADIEKMAERNLFSQEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|428212125|ref|YP_007085269.1| RsmD family RNA methyltransferase [Oscillatoria acuminata PCC 6304]
gi|428000506|gb|AFY81349.1| RNA methyltransferase, RsmD family [Oscillatoria acuminata PCC
6304]
Length = 185
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 126 GMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184
G RP V+ A F++ Q S GC RWLDL +G G++ EA+ RG EV +
Sbjct: 16 GEQTRPTAARVREAVFNVWQGSIAGC-------RWLDLCAGAGTMSAEALCRGAVEVVAM 68
Query: 185 EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244
E P ++ ++ NL+ D + +R + + R + G+ FD M PPY +
Sbjct: 69 EQSPRALA-IIRENLQRVKQAD-QRVDILRGDV-MARLKSLQGRQ--FDRMYFDPPYASS 123
Query: 245 DYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299
Y+ ++ I++ L+ D I VE+ LD L I++RR+ T + G
Sbjct: 124 LYQPVLVAIAQYQLLAPDGEIAVEHRSDRLTLDPIPTLEIIRERRYSNTTVTFIG 178
>gi|268611482|ref|ZP_06145209.1| putative methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 186
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L++P+GMDVRP + VK A F +Q + LDL++G+G
Sbjct: 1 MRVITGIARGRRLVAPEGMDVRPTTDKVKEAIFSAIQ------FQIEGADVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG F++ + V NL TGF S + + +++ Q
Sbjct: 55 MGIEAISRGAKHAVFIDSSNRALRCVH-ENLRNTGFERYSEVISRDSYDYIKLTSQH--- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
FD + + PPY + S IV P L GC++
Sbjct: 111 ---FDIIILDPPY-------------------RHSHIVNILPFAAKKLKDGGCII 143
>gi|154685920|ref|YP_001421081.1| hypothetical protein RBAM_014870 [Bacillus amyloliquefaciens FZB42]
gi|308173466|ref|YP_003920171.1| hypothetical protein BAMF_1575 [Bacillus amyloliquefaciens DSM 7]
gi|384159516|ref|YP_005541589.1| enzyme with adenosyl binding site [Bacillus amyloliquefaciens
TA208]
gi|384164047|ref|YP_005545426.1| hypothetical protein LL3_01658 [Bacillus amyloliquefaciens LL3]
gi|384168567|ref|YP_005549945.1| hypothetical protein BAXH7_01965 [Bacillus amyloliquefaciens XH7]
gi|394993838|ref|ZP_10386578.1| hypothetical protein BB65665_15188 [Bacillus sp. 916]
gi|452855452|ref|YP_007497135.1| Putative rRNA methyltransferase ylbH [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|154351771|gb|ABS73850.1| YlbH [Bacillus amyloliquefaciens FZB42]
gi|307606330|emb|CBI42701.1| putative enzyme with adenosyl binding site [Bacillus
amyloliquefaciens DSM 7]
gi|328553604|gb|AEB24096.1| enzyme with adenosyl binding site [Bacillus amyloliquefaciens
TA208]
gi|328911602|gb|AEB63198.1| putative enzyme with adenosyl binding site [Bacillus
amyloliquefaciens LL3]
gi|341827846|gb|AEK89097.1| putative enzyme with adenosyl binding site [Bacillus
amyloliquefaciens XH7]
gi|393805409|gb|EJD66788.1| hypothetical protein BB65665_15188 [Bacillus sp. 916]
gi|452079712|emb|CCP21469.1| Putative rRNA methyltransferase ylbH [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 184
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVISGSRKGRALKAVPGTSTRPTTDKVKESIFNMIGP------YFDGGTGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V N++ L + ++ E L A + +
Sbjct: 55 LGIEALSRGFDRCIFVDRDFKAIQTVK-ANIKALDLLSSAEVYRNDAERALYAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + L+ I + ++ +D F+V E+ + + G L +
Sbjct: 111 EKGFDGIFLDPPYKEQKLKALIEMIDEQNMLNEDGFVVAEHDKAVALPEAVGALSVTRRE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|379012002|ref|YP_005269814.1| methyltransferase [Acetobacterium woodii DSM 1030]
gi|375302791|gb|AFA48925.1| methyltransferase [Acetobacterium woodii DSM 1030]
Length = 198
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 14/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++++ G+ R KKL+S G +RP + VKGA F+ LQ+ +R R ++DL+SGTG
Sbjct: 1 MRIIAGEKRGKKLVSITGNKIRPTTDKVKGAIFNSLQN------EIRDARIFVDLFSGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + +F ++ + + N+ G+ + + + ++ L +
Sbjct: 55 AMGLEALSRGVEKAYFFDVSQESIE-ITKKNITLLGYQNQAKVFH---QSALHGVDMLEQ 110
Query: 228 KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
D + V PY VD E+ L+ +S+ ++ ++ +V+E M L
Sbjct: 111 NKIRCDIIFVDSPYHQVD-EIYHLLEVVSEKEILSENGKLVIETEKSVIMPLVKNKLTCY 169
Query: 286 KDRRFGRTHLAIY 298
K + +G T ++ Y
Sbjct: 170 KSKHYGITTISYY 182
>gi|257438106|ref|ZP_05613861.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
gi|257199437|gb|EEU97721.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
A2-165]
Length = 189
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G ++ RP M+ VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTEITRPTMDQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ + V N+++ N + G D S ++ +L +
Sbjct: 55 QLGIEALSRGAARCVFLDENREAV-NIVMKNCKNCGVFDRSRVNIGEAARYLSACHE--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ E ++ + K G ++ E + G + K
Sbjct: 111 ---QFDIVLLDPPFHTGTLEKILPGVDKCLAPG--GIVICESETGLVLPAEVGGMTLKKQ 165
Query: 288 RRFGRTHLAIYG 299
++G+ L YG
Sbjct: 166 YKYGKVLLWKYG 177
>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
Length = 192
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R KKL R ++K + F+ LQ P S W++++SG GS
Sbjct: 6 IKIIGGKYRGKKLYMGDKEVTRSTKNILKESVFNTLQWE--VPDST----WVEMFSGVGS 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-G 227
+G+EAISRG + +F+E DP + VL N++ I ET + E+
Sbjct: 60 IGLEAISRGAKKAYFLEKDP-EAARVLKKNIDSMDPEKCEIILGDSFETVWDVIEKLKRD 118
Query: 228 KDGPFDYMSVTPPYTAVD-----YEV---LMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
KD F Y PP+ + YE L+ Q+ K+ + +++E+ D +
Sbjct: 119 KDRAFFYFD--PPFAIREGYEDIYEKVQHLIKQLPKNNV----EKVLIEHQSDYDFPEEL 172
Query: 280 GCLVKIKDRRFGRTHLAIY 298
G KIK R+FG++ + Y
Sbjct: 173 GLYKKIKTRKFGKSSVTYY 191
>gi|227499433|ref|ZP_03929544.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
gi|227218495|gb|EEI83738.1| possible rRNA (guanine-N(2)-)-methyltransferase [Anaerococcus
tetradius ATCC 35098]
Length = 187
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ GK + LLSPK RP VK A FD+L +P LDL+SGTG
Sbjct: 1 MRVVAGKYKGFNLLSPKVNSSRPTDNKVKEAIFDML-------FPYKPDFVALDLFSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG EV+F E + S +L NL + V S +++ F + + +
Sbjct: 54 QMGIEFLSRGAREVYFNEKNSSTHS-ILKENLSK---IKVDSAKITKLD-FRKALKYYKE 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FDY+ + PPY + + I + L+ + I+ E D G + +K+
Sbjct: 109 EKLKFDYIFLDPPYDGDMLKQAIELIIECELLNDEGIIITESDRELDFSGRGGLNI-LKE 167
Query: 288 RRFGRTHLAIY 298
+ +GR + IY
Sbjct: 168 KSYGRKLIKIY 178
>gi|407976028|ref|ZP_11156930.1| methyltransferase [Nitratireductor indicus C115]
gi|407428529|gb|EKF41211.1| methyltransferase [Nitratireductor indicus C115]
Length = 184
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +P+ +RP + + A F++L+ P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRTLATPRSDAIRPTTDRTREALFNVLEHR--YPEKLEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S F+E + ++ N+E G S I E VG
Sbjct: 59 LGLEALSRGASFALFIE-EAAAARALIRTNVEAMGLQGRSKIFRRDATRLGE-----VGT 112
Query: 229 DGPFDYMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVE 268
PFD + PPY + + L A IS LV + +VVE
Sbjct: 113 MLPFDLVLADPPYGKGLGEKALSAAISGGWLV-PGALVVVE 152
>gi|397690459|ref|YP_006527713.1| methyltransferase [Melioribacter roseus P3M]
gi|395811951|gb|AFN74700.1| putative methyltransferase [Melioribacter roseus P3M]
Length = 182
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + + + PK VRP + VK + F+ L + + D+Y+G+GS
Sbjct: 1 MRIISGKFKGRTIKFPKSKLVRPTTDKVKESIFNYLNNI----IDFEDIKVCDIYAGSGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG HFVE D + VS L N+E G D + I+ + F + V
Sbjct: 57 LGLEALSRGAGLTHFVEKD-FFVSKTLRENIEALGVEDNTRIYRMEALRFSSQTVHEV-- 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
+D + PP+ D ++ +I + + + +++E ++T
Sbjct: 114 ---YDLILADPPFFKDDIHKVVKKIIANGFLSEAGIMIIERSIQT 155
>gi|375099392|ref|ZP_09745655.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
gi|374660124|gb|EHR60002.1| RNA methyltransferase, RsmD family [Saccharomonospora cyanea
NA-134]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + RVE + +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVEAVV---SEPT 108
Query: 227 GKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVE 268
G+ PFD + PPY AVD E V++ ++ + + ++ +VVE
Sbjct: 109 GE--PFDLVLADPPY-AVDAETLGVVLTRLVDNGWLAANALVVVE 150
>gi|320529302|ref|ZP_08030392.1| RNA methyltransferase, RsmD family [Selenomonas artemidis F0399]
gi|402303345|ref|ZP_10822441.1| RNA methyltransferase, RsmD family [Selenomonas sp. FOBRC9]
gi|320138476|gb|EFW30368.1| RNA methyltransferase, RsmD family [Selenomonas artemidis F0399]
gi|400378975|gb|EJP31825.1| RNA methyltransferase, RsmD family [Selenomonas sp. FOBRC9]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +P G RP + + A F +L S + + LDL++GTG+
Sbjct: 1 MRIITGSARGCRLKAPPGEATRPTADRTREALFSMLGS------RVMDAQVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + H V +D +VL+ N T + R + + AE + +
Sbjct: 55 LALEALSRGAA--HAVMID-RATHDVLVENARRTKL--AQRVELRRGDVYGHAAE--LAR 107
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + PPY D ++ + L+ D V+E + + G L I++
Sbjct: 108 AGRTFDLIFADPPYAKGDALRVLRAVDSGVLLAADGLFVLEQGAGEECAEHVGALSLIRE 167
Query: 288 RRFGRTHLAIY 298
RR+G + Y
Sbjct: 168 RRYGAARICFY 178
>gi|313896207|ref|ZP_07829760.1| RNA methyltransferase, RsmD family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975006|gb|EFR40468.1| RNA methyltransferase, RsmD family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +P G RP + + A F +L S + + LDL++GTG+
Sbjct: 1 MRIITGSARGCRLKAPPGEATRPTADRTREALFSMLGS------RVMDAQVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + H V +D +VL+ N T + R + + AE + +
Sbjct: 55 LALEALSRGAA--HAVMID-RATHDVLVENARRTKL--AQCVELRRGDVYGHAAE--LAR 107
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + PPY D ++ + L+ D V+E + + G L I++
Sbjct: 108 AGRTFDLIFADPPYAKGDALRVLRAVDSGVLLATDGLFVLEQGAGEECAEHVGALSLIRE 167
Query: 288 RRFGRTHLAIY 298
RR+G + Y
Sbjct: 168 RRYGAARICFY 178
>gi|408501969|ref|YP_006869413.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|408475332|gb|AFU66097.1| putative SAM dependent methyltransferase [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 175
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
L P G +RP M+ ++ + F IL GC +LDL++G+G G+EA SRG
Sbjct: 7 LRCPDG-PIRPAMDRMRESLFAILGDMRGCS-------FLDLFAGSGVCGLEAYSRGAYP 58
Query: 181 VHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
V FVE W V +VL+ N++ L + VE ++ RA F ++ +
Sbjct: 59 VVFVE---WNVRSFSVLLQNVQVA--LCRLECRCMAVERYIARARTL------FHFVYLD 107
Query: 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
PP+ + L+ ++S+++L + S ++V P + D LV+ R +GR+ + Y
Sbjct: 108 PPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSVVDFY 167
Query: 299 GPDWA 303
D A
Sbjct: 168 RRDKA 172
>gi|306830165|ref|ZP_07463349.1| probable methyltransferase [Streptococcus mitis ATCC 6249]
gi|304427691|gb|EFM30787.1| probable methyltransferase [Streptococcus mitis ATCC 6249]
Length = 179
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E +RA + VG
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--DRALEQVG- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 109 -GTFDLVFLDPPYAK---EQIVADIEKMAERNLFSQEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|350269797|ref|YP_004881105.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
gi|348594639|dbj|BAK98599.1| hypothetical protein OBV_14010 [Oscillibacter valericigenes
Sjm18-20]
Length = 190
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L +GM+ RP + VK F LQ + R LDL++GTG
Sbjct: 1 MRVITGSARGRRLKELEGMETRPTTDRVKEGLFSALQF------EIEGRRVLDLFAGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ V ++ NL+ TG D + + + +L +
Sbjct: 55 LGIEALSRGAAGCVFVDRRADAV-KLIRENLKITGLTDRARVVSGDSMEYLSALRE---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
FD + + PPY A E + I++ ++ I E P
Sbjct: 110 --KFDLILLDPPYAAGLLEPALVNIARFDILAPHGIIAAEAP 149
>gi|429741218|ref|ZP_19274881.1| RNA methyltransferase, RsmD family [Porphyromonas catoniae F0037]
gi|429159192|gb|EKY01709.1| RNA methyltransferase, RsmD family [Porphyromonas catoniae F0037]
Length = 187
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 37/203 (18%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK +R++ PK + RP + K F++LQ L LDL+SGTGS
Sbjct: 1 MRIIGGKYKRRRFDVPKSFNARPTTDFAKENLFNVLQHY----IDLEGITALDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +E +SRG S V +E E F IH+V E E+ Q +
Sbjct: 57 ISVELLSRGASRVVALEQ-----------RREHATF-----IHSVAKELGEEKHLQVLQA 100
Query: 229 D------------GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276
D +D++ PPY + VL I S L+ D +VVE+P + D
Sbjct: 101 DVFRFIRGAKSQSSLYDFIFADPPYKLSEIAVLPELILSSGLLKPDGLLVVEHPQQYDF- 159
Query: 277 DTCGCLVKIKDRR-FGRTHLAIY 298
L +RR +G + +++
Sbjct: 160 ---SALPHFAERRVYGSVNFSLF 179
>gi|332981577|ref|YP_004463018.1| methyltransferase [Mahella australiensis 50-1 BON]
gi|332699255|gb|AEE96196.1| methyltransferase [Mahella australiensis 50-1 BON]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 30/201 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG A+ KL PK VRP ++VK A F+IL + +LDL++GTGS
Sbjct: 1 MRITGGMAKGHKLSGPKSAGVRPTADIVKEALFNIL------APYIDETVFLDLFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA+SRG EV+FV+ V ++ N+ L +S + + + + K
Sbjct: 55 VGLEAMSRGAREVYFVDNKRQCV-QLIKSNVS---LLRMSDKAKIILADAIAAVDLLSRK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M ISK V++ + D+L+ G LV +
Sbjct: 111 QVRFDIIFMDPPYE-------MGYISK----------VLKAIVSADILNRSGILVV---Q 150
Query: 289 RFGRTHLAIYGPDWAQKKRKS 309
R R L + W+ K ++
Sbjct: 151 RSKREALGLADVGWSTYKERA 171
>gi|365840250|ref|ZP_09381450.1| RNA methyltransferase, RsmD family [Anaeroglobus geminatus F0357]
gi|364562040|gb|EHM39911.1| RNA methyltransferase, RsmD family [Anaeroglobus geminatus F0357]
Length = 196
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRP---GRWLDLYSG 165
++++ G+AR + L SP+G RP + + + F+IL + RP R LD+++G
Sbjct: 13 VRIISGRARGRILKSPRGTATRPTSDRTRESLFNILAA--------RPFGQARILDIFAG 64
Query: 166 TGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
TG++G+EA+SRG E F+++ +++ N G VS TV
Sbjct: 65 TGALGLEAMSRGAVEGVFIDIR---TGSLIRENAALCG---VSRACTVLSMNHRRALASL 118
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G+ FDY+ PPY +A + L+ D VVE+ R D ++ G +
Sbjct: 119 QGR--TFDYIFADPPYDNDLVNETLAAVFAYRLLAPDGLCVVEHSGRED-IEAGGAFTIV 175
Query: 286 KDRRFGR 292
+++ +GR
Sbjct: 176 REKAYGR 182
>gi|331265659|ref|YP_004325289.1| methyltransferase, putative [Streptococcus oralis Uo5]
gi|326682331|emb|CBY99948.1| methyltransferase, putative [Streptococcus oralis Uo5]
Length = 179
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V K
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-K 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
D PFD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 109 D-PFDLVFLDPPYAK---EQIVADIEKMAERNLFSEEVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|289167187|ref|YP_003445454.1| methyltransferase [Streptococcus mitis B6]
gi|288906752|emb|CBJ21586.1| methyltransferase [Streptococcus mitis B6]
Length = 179
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+ IEA+SRG S VE D N++ N++ T +V ++++ ERA EQ
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQNIVAENIQMTK--EVGKFQLLKMDA--ERALEQL-- 107
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVK 284
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 -SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGI 163
Query: 285 IKDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 164 WKEKIYGISKVTVY 177
>gi|409991405|ref|ZP_11274669.1| methyltransferase [Arthrospira platensis str. Paraca]
gi|291571120|dbj|BAI93392.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409937727|gb|EKN79127.1| methyltransferase [Arthrospira platensis str. Paraca]
Length = 183
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
++L + G + RP V+ A F+I Q GC RWLDL +G+GS+G EA+ RG
Sbjct: 9 RQLKTLPGQNTRPTPSRVREAVFNIWQDITGC-------RWLDLCAGSGSMGAEALCRGA 61
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
+ +E I W V ++R + ++ FD +
Sbjct: 62 AIAVAIEQSG---PACQIIKQNWQQVATPEQQFRVLRGDVVKRLKSLAAEE--FDRIYFD 116
Query: 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
PPYTA YE ++ I+K +L+ ++ E+ + +M++ G L ++ + +G +A Y
Sbjct: 117 PPYTANLYEPVLEAIAKYSLLAAGGELIAEHDPKREMVEVSG-LAIVRQKVYGGCAIAFY 175
>gi|385264627|ref|ZP_10042714.1| RNA methyltransferase, RsmD family protein [Bacillus sp. 5B6]
gi|385149123|gb|EIF13060.1| RNA methyltransferase, RsmD family protein [Bacillus sp. 5B6]
Length = 184
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVISGSRKGRALKAVPGTSTRPTTDKVKESIFNMIGP------YFDGGTGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V N++ L + ++ E L A + +
Sbjct: 55 LGIEALSRGFDRCIFVDRDFKAIQTVK-ANIKALDLLSSAEVYRNDAERALYAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + L+ I + ++ +D F+V E+ + + G L +
Sbjct: 111 EEGFDGIFLDPPYKEQKLKALIEMIDEQNMLNEDGFVVAEHDKAVALPEAVGALSVTRRE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|227545781|ref|ZP_03975830.1| possible rRNA (guanine-N(2)-)-methyltransferase [Bifidobacterium
longum subsp. longum ATCC 55813]
gi|239622521|ref|ZP_04665552.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|312133354|ref|YP_004000693.1| n6-adenine-specific methylase [Bifidobacterium longum subsp. longum
BBMN68]
gi|317481971|ref|ZP_07940996.1| RsmD family RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|322688455|ref|YP_004208189.1| methylase [Bifidobacterium longum subsp. infantis 157F]
gi|384202184|ref|YP_005587931.1| methylase [Bifidobacterium longum subsp. longum KACC 91563]
gi|419847490|ref|ZP_14370660.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 1-6B]
gi|419854996|ref|ZP_14377766.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 44B]
gi|227213897|gb|EEI81736.1| possible rRNA (guanine-N(2)-)-methyltransferase [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|239514518|gb|EEQ54385.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|311772577|gb|ADQ02065.1| N6-adenine-specific methylase [Bifidobacterium longum subsp. longum
BBMN68]
gi|316916538|gb|EFV37935.1| RsmD family RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|320459791|dbj|BAJ70411.1| putative methylase [Bifidobacterium longum subsp. infantis 157F]
gi|338755191|gb|AEI98180.1| methylase [Bifidobacterium longum subsp. longum KACC 91563]
gi|386410885|gb|EIJ25655.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 1-6B]
gi|386416328|gb|EIJ30830.1| RNA methyltransferase, RsmD family [Bifidobacterium longum subsp.
longum 44B]
Length = 203
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + +++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
EQ G G PFD + + PPY E L++ ++ + +++ I++E +R+D
Sbjct: 108 EQVAGGFGEPFDVIFIDPPYAYETAECNQLLSDLAAGSATNENTVIMLERSVRSDDPTAP 167
Query: 280 GCLVKIKDRRFGRTHL 295
G + R +G T +
Sbjct: 168 GGWQITESRNYGETAV 183
>gi|442321503|ref|YP_007361524.1| methyltransferase [Myxococcus stipitatus DSM 14675]
gi|441489145|gb|AGC45840.1| methyltransferase [Myxococcus stipitatus DSM 14675]
Length = 185
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 109 LQVLGGKARRKKLLSPK--GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
++++ G A+ + L PK +RP + V+ F++L L + LDLY+GT
Sbjct: 1 MRIVSGSAKGRALAGPKPTSRHIRPTADRVRETLFNVLGQM------LDGQQVLDLYAGT 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAE 223
G++G+EA+SRG V V+ D + + N + GF +++ + VR L+R
Sbjct: 55 GALGLEALSRGAGGVVLVDQDREAQA-LCRQNTDALGFSSQVELLAQPAVRALETLKR-- 111
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ F+ + PPY A E ++ ++ + L+ +VVE+ R + L
Sbjct: 112 ----RGARFELIFADPPYAARVVETVLEGVTAAGLLSPGGMLVVEHDKRESAPEAHAGLT 167
Query: 284 KIKDRRFGRTHLAIY 298
+ RRFG T ++ Y
Sbjct: 168 REDQRRFGDTLVSFY 182
>gi|429218232|ref|YP_007179876.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
gi|429129095|gb|AFZ66110.1| N6-adenine-specific methylase [Deinococcus peraridilitoris DSM
19664]
Length = 181
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 22/190 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++LGG A+ + L P RP ++ + FD+L S G GR+LDLY G+G+
Sbjct: 10 LRILGGTAKGRALQVPD--SARPTGARLRKSLFDLLDSRQGA------GRFLDLYGGSGA 61
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA SRG +V VE +P V LE L +H V E A + +
Sbjct: 62 VGLEAASRGY-DVTLVERNPAAVR-----ILERNARLLSLPVHVVSGE-----ALGVLSR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + V PPY D + + + KS V ++V++P + + + G ++ R
Sbjct: 111 LGAFDTVFVDPPYLQ-DIQRAASSVLKSGAVLAGGLLIVQHPTQLTLGEHEGY--TLERR 167
Query: 289 RFGRTHLAIY 298
+G + +Y
Sbjct: 168 VYGSNVMTLY 177
>gi|302342192|ref|YP_003806721.1| methyltransferase [Desulfarculus baarsii DSM 2075]
gi|301638805|gb|ADK84127.1| methyltransferase [Desulfarculus baarsii DSM 2075]
Length = 189
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 23/197 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+L+V GG+ R + L +P G D RP V+ A F+IL GG + R DL++G+G
Sbjct: 1 MLKVCGGELRGRALKAPAGHDTRPTAAKVRQALFNIL---GGRTSG---ARVCDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + FVE +V ++ NL G + A Q +
Sbjct: 55 ALGVEALSRGAAWCLFVERR-RLVCRLIAQNLAGLGLEARGRVLMADAAM----ASQRLL 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY-----PLRTDMLDTCGCL 282
+ GPFD PPY L ++ + +V+E+ P +T L
Sbjct: 110 EQGPFDLALADPPYGQGFVARLARLGARPGFLAPGGVLVIEHAPGEAPPQTG-------L 162
Query: 283 VKIKDRRFGRTHLAIYG 299
V I R +G+T L G
Sbjct: 163 VIIDHRAYGQTELTFLG 179
>gi|260434558|ref|ZP_05788528.1| RNA methyltransferase, RsmD family [Synechococcus sp. WH 8109]
gi|260412432|gb|EEX05728.1| RNA methyltransferase, RsmD family [Synechococcus sp. WH 8109]
Length = 206
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++ GG+ +LLSP G RP V+ A +IL L RWLDL SG+G
Sbjct: 7 LRLSGGR----RLLSPGGRTARPTTSRVREAVMNILA------PHLHDCRWLDLCSGSGV 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV-- 226
+G EA+ RG V V+ DP + + V++ + E ER E
Sbjct: 57 MGCEALQRGARCVIAVDQDPQCI------RVSRNNLSAVAASRSPAPEIRTERRELIAWL 110
Query: 227 ---GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
PFD + PPY YE + +++ + + +DS +V E+ R+++ G
Sbjct: 111 RKGWSQEPFDIVYFDPPYDQGLYEPCLIALAEGSWLHQDSLVVCEH--RSNLNPEPGSDW 168
Query: 284 KIKD-RRFGRTHLAIYGP 300
++ D RR+G + + + P
Sbjct: 169 RVVDQRRYGVSSVMLLSP 186
>gi|119963824|ref|YP_948202.1| N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403527676|ref|YP_006662563.1| SAM-dependent methyltransferase, class I [Arthrobacter sp. Rue61a]
gi|119950683|gb|ABM09594.1| putative N6 adenine-specific methylase [Arthrobacter aurescens TC1]
gi|403230103|gb|AFR29525.1| putative SAM-dependent methyltransferase, class I [Arthrobacter sp.
Rue61a]
Length = 197
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 14/195 (7%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+++ G L S G RP + VK A F L+S A + R LDLY+G+GS+
Sbjct: 12 RIIAGVGGGNPLTSVPGTATRPTTDRVKEALFSRLESL----AVIDDARVLDLYAGSGSL 67
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL---DVSSIHTVRVETFLERAEQFV 226
GIE+ SRG V VE D S+V N + L S+H +VE+FLERA
Sbjct: 68 GIESASRGARTVDLVEFDA-KASDVCQRNADLVNQLLGGKRVSVHRSKVESFLERA---- 122
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVEYPLRTDMLDTCGCLVKI 285
G +D + + PPY +D L A + K A D + +VVE R+ L
Sbjct: 123 GDADRWDLVFLDPPYP-LDEPALSAVLEKLAPYLDDAAVVVVERSSRSPEPVWPEALECF 181
Query: 286 KDRRFGRTHLAIYGP 300
D+++G T L P
Sbjct: 182 ADKKYGETKLWFAEP 196
>gi|163790320|ref|ZP_02184752.1| methylase, putative [Carnobacterium sp. AT7]
gi|159874391|gb|EDP68463.1| methylase, putative [Carnobacterium sp. AT7]
Length = 190
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ +KL + G + RP + VK + F+I+ G LDL++G+G
Sbjct: 1 MRIITGEYGGRKLKAVPGNNTRPTTDKVKESIFNII------GPYFDGGVCLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG + ++ DP + + N+ T D ++ RA +
Sbjct: 55 LAIEAVSRGMEKAVLIDQDPLAIKTIK-ENISVTKEADKFDVY----RNDANRAITLLKG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + E + +I S L+ + I+ E RT + + G +
Sbjct: 110 NKKFDLLFLDPPYAKQEIEKQIEKIIDSELLNDKAIIICELDKRTQLKEVIGAATVFRQE 169
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 170 FYGASQIVMY 179
>gi|409436241|ref|ZP_11263433.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
gi|408752151|emb|CCM74583.1| putative methylase protein [Rhizobium mesoamericanum STM3625]
Length = 186
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK D+RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSSDIRPTADRTRESLFNILSHA--YPECIDSTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRGLLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PF + PPY
Sbjct: 111 GNLEPFQMLFADPPY 125
>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
SK46]
Length = 188
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 13/135 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR ++L++PKG RP + K A F + G + R LDL++G+G
Sbjct: 1 MTRIIAGEARGRRLVAPKGETTRPTSDRAKEAIFSSWSTRFGLEGT----RVLDLFAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG V VE DP ++ + N+ G DV ++ ++V ++L G
Sbjct: 57 ALGLEAASRGARSVVLVENDPNAIA-AIEKNIRTVGHPDV-AVSPMKVSSYL------AG 108
Query: 228 KDG-PFDYMSVTPPY 241
G PFD + PPY
Sbjct: 109 APGEPFDRVIADPPY 123
>gi|115375435|ref|ZP_01462696.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|310821112|ref|YP_003953470.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|115367562|gb|EAU66536.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
gi|309394184|gb|ADO71643.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
Length = 185
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 109 LQVLGGKARRKKLLSPK--GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWL------ 160
++++ G AR + L PK +RP + V+ F++L G+WL
Sbjct: 1 MRIVAGSARGRALQGPKPTSRHIRPTADRVRETLFNVL------------GQWLEGQAVL 48
Query: 161 DLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220
DLY+GTG++G+EA+SRG V+ D + + N + GF + + V
Sbjct: 49 DLYAGTGALGLEALSRGAGRAVLVDSDREAQA-LCRQNTDTLGFSSQVELLCLPV----A 103
Query: 221 RAEQFVGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
RA + +G+ G F+ + PPY E ++ Q+++S L+ +VVE+ R +
Sbjct: 104 RAVEQLGQKGLSFELIFADPPYAVRGVEGVLEQVARSKLLTPGGMLVVEHDKREVAPGSH 163
Query: 280 GCLVKIKDRRFGRTHLAIY 298
L ++ R+FG T + Y
Sbjct: 164 EGLERVDQRKFGDTVASFY 182
>gi|30264002|ref|NP_846379.1| methyltransferase [Bacillus anthracis str. Ames]
gi|47529435|ref|YP_020784.1| methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49186840|ref|YP_030092.1| methyltransferase [Bacillus anthracis str. Sterne]
gi|52141558|ref|YP_085271.1| methyltransferase [Bacillus cereus E33L]
gi|65321325|ref|ZP_00394284.1| COG0742: N6-adenine-specific methylase [Bacillus anthracis str.
A2012]
gi|118479149|ref|YP_896300.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|165872177|ref|ZP_02216816.1| putative methyltransferase [Bacillus anthracis str. A0488]
gi|167633769|ref|ZP_02392093.1| putative methyltransferase [Bacillus anthracis str. A0442]
gi|167641010|ref|ZP_02399267.1| putative methyltransferase [Bacillus anthracis str. A0193]
gi|170688810|ref|ZP_02880014.1| putative methyltransferase [Bacillus anthracis str. A0465]
gi|170705830|ref|ZP_02896293.1| putative methyltransferase [Bacillus anthracis str. A0389]
gi|177654302|ref|ZP_02936231.1| putative methyltransferase [Bacillus anthracis str. A0174]
gi|190566102|ref|ZP_03019021.1| putative methyltransferase [Bacillus anthracis str. Tsiankovskii-I]
gi|196035922|ref|ZP_03103324.1| putative methyltransferase [Bacillus cereus W]
gi|196038720|ref|ZP_03106028.1| putative methyltransferase [Bacillus cereus NVH0597-99]
gi|196045925|ref|ZP_03113154.1| putative methyltransferase [Bacillus cereus 03BB108]
gi|218905061|ref|YP_002452895.1| putative methyltransferase [Bacillus cereus AH820]
gi|225865912|ref|YP_002751290.1| RNA methyltransferase, RsmD family [Bacillus cereus 03BB102]
gi|227816703|ref|YP_002816712.1| RsmD family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|228916567|ref|ZP_04080133.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928977|ref|ZP_04092009.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228935245|ref|ZP_04098071.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947649|ref|ZP_04109939.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092979|ref|ZP_04224110.1| Methyltransferase [Bacillus cereus Rock3-42]
gi|229123443|ref|ZP_04252647.1| Methyltransferase [Bacillus cereus 95/8201]
gi|229186170|ref|ZP_04313339.1| Methyltransferase [Bacillus cereus BGSC 6E1]
gi|229600348|ref|YP_002868231.1| RNA methyltransferase, RsmD family [Bacillus anthracis str. A0248]
gi|254683696|ref|ZP_05147556.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254721532|ref|ZP_05183321.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
A1055]
gi|254736041|ref|ZP_05193747.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254743932|ref|ZP_05201615.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
Kruger B]
gi|254754289|ref|ZP_05206324.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
Vollum]
gi|254758020|ref|ZP_05210047.1| RNA methyltransferase, RsmD family protein [Bacillus anthracis str.
Australia 94]
gi|301055421|ref|YP_003793632.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
gi|376267827|ref|YP_005120539.1| Ribosomal RNA small subunit methyltransferase D [Bacillus cereus
F837/76]
gi|386737819|ref|YP_006211000.1| methyltransferase [Bacillus anthracis str. H9401]
gi|421510494|ref|ZP_15957386.1| methyltransferase [Bacillus anthracis str. UR-1]
gi|421638014|ref|ZP_16078610.1| methyltransferase [Bacillus anthracis str. BF1]
gi|423550321|ref|ZP_17526648.1| RsmD family RNA methyltransferase [Bacillus cereus ISP3191]
gi|30258646|gb|AAP27865.1| RNA methyltransferase, RsmD family [Bacillus anthracis str. Ames]
gi|47504583|gb|AAT33259.1| putative methyltransferase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180767|gb|AAT56143.1| methyltransferase, putative [Bacillus anthracis str. Sterne]
gi|51975027|gb|AAU16577.1| possible methyltransferase [Bacillus cereus E33L]
gi|118418374|gb|ABK86793.1| possible methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|164712124|gb|EDR17662.1| putative methyltransferase [Bacillus anthracis str. A0488]
gi|167511060|gb|EDR86449.1| putative methyltransferase [Bacillus anthracis str. A0193]
gi|167531175|gb|EDR93862.1| putative methyltransferase [Bacillus anthracis str. A0442]
gi|170129370|gb|EDS98234.1| putative methyltransferase [Bacillus anthracis str. A0389]
gi|170667326|gb|EDT18085.1| putative methyltransferase [Bacillus anthracis str. A0465]
gi|172080792|gb|EDT65873.1| putative methyltransferase [Bacillus anthracis str. A0174]
gi|190563021|gb|EDV16987.1| putative methyltransferase [Bacillus anthracis str. Tsiankovskii-I]
gi|195991571|gb|EDX55537.1| putative methyltransferase [Bacillus cereus W]
gi|196023365|gb|EDX62043.1| putative methyltransferase [Bacillus cereus 03BB108]
gi|196030443|gb|EDX69042.1| putative methyltransferase [Bacillus cereus NVH0597-99]
gi|218539250|gb|ACK91648.1| putative methyltransferase [Bacillus cereus AH820]
gi|225790660|gb|ACO30877.1| RNA methyltransferase, RsmD family [Bacillus cereus 03BB102]
gi|227005231|gb|ACP14974.1| RNA methyltransferase, RsmD family [Bacillus anthracis str. CDC
684]
gi|228597346|gb|EEK54997.1| Methyltransferase [Bacillus cereus BGSC 6E1]
gi|228660219|gb|EEL15855.1| Methyltransferase [Bacillus cereus 95/8201]
gi|228690350|gb|EEL44136.1| Methyltransferase [Bacillus cereus Rock3-42]
gi|228812169|gb|EEM58500.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824410|gb|EEM70216.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830784|gb|EEM76389.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228843146|gb|EEM88228.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229264756|gb|ACQ46393.1| RNA methyltransferase, RsmD family [Bacillus anthracis str. A0248]
gi|300377590|gb|ADK06494.1| possible methyltransferase [Bacillus cereus biovar anthracis str.
CI]
gi|364513627|gb|AEW57026.1| Ribosomal RNA small subunit methyltransferase D [Bacillus cereus
F837/76]
gi|384387671|gb|AFH85332.1| methyltransferase [Bacillus anthracis str. H9401]
gi|401189937|gb|EJQ96987.1| RsmD family RNA methyltransferase [Bacillus cereus ISP3191]
gi|401819436|gb|EJT18614.1| methyltransferase [Bacillus anthracis str. UR-1]
gi|403394440|gb|EJY91680.1| methyltransferase [Bacillus anthracis str. BF1]
Length = 188
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + + NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIKTIH-QNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ I+ E+ + ++ G LVK++
Sbjct: 111 EMSFDLILIDPPYKDQKIVSLISVMDQHGLLHNAGLIMAEHGNDVVLPESIGRLVKVRAE 170
Query: 289 RFGRTHLAIY 298
++G T ++IY
Sbjct: 171 KYGITAISIY 180
>gi|154499927|ref|ZP_02037965.1| hypothetical protein BACCAP_03584 [Bacteroides capillosus ATCC
29799]
gi|150271525|gb|EDM98782.1| RNA methyltransferase, RsmD family [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 181
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR ++L GM+ RP + VK + F+I+Q + LDL+ GTG
Sbjct: 1 MRVITGTARGRRLKELPGMETRPTTDKVKESIFNIVQF------DVEGRNVLDLFGGTGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV++ + V+ N+++ GF + FL G
Sbjct: 55 LGIEALSRGAERCTFVDLRKEAAA-VIRENVKFCGFEGQGKVVQGDGIAFL------TGC 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + E + I+K ++ ++ IV E + + K ++
Sbjct: 108 REKFDLVFLDPPYASGLLERALEVIAKIDIMSENGIIVCESAAEQVLPELSAPYEKGREY 167
Query: 289 RFGRTHLAIY 298
R+G+ + +Y
Sbjct: 168 RYGKIKVTLY 177
>gi|418472121|ref|ZP_13041891.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
gi|371547281|gb|EHN75671.1| DNA methylase [Streptomyces coelicoflavus ZG0656]
Length = 195
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ GKA ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG V VE D V +V SI + +AEQ +
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAARTVR---------ENVKSIGLPGADVRAGKAEQIIR 109
Query: 227 --GKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + ++ + VE R
Sbjct: 110 TPAPAEPYDVVFLDPPYAVSDDDLREILLTLRTEGWLATEALVTVERSTRGGEFRWPDGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 EAIRARRYG 178
>gi|385260024|ref|ZP_10038178.1| RNA methyltransferase, RsmD family [Streptococcus sp. SK140]
gi|385192698|gb|EIF40094.1| RNA methyltransferase, RsmD family [Streptococcus sp. SK140]
Length = 179
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 107 RLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
RLL+ L GK RP + V+GA F+++ GR LDLY+G+
Sbjct: 11 RLLKTLDGKT------------TRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGS 52
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G + IEA+SRG S VE D N++ N+ T + S +++E+ RA + V
Sbjct: 53 GGLSIEAVSRGMSSAVLVEKDRR-AQNIVAENIRMTK--ETSKFQLLKMES--NRALEQV 107
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLV 283
DG FD + + PPY E +++ I K A L +D +V E ++ + CL
Sbjct: 108 --DGVFDLVFLDPPYAK---EQIVSDIEKMAERNLFSEDVMVVCETDKSVELPEEIACLG 162
Query: 284 KIKDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 163 IWKEKIYGISKVTVY 177
>gi|238924039|ref|YP_002937555.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|238875714|gb|ACR75421.1| site-specific DNA-methyltransferase (adenine-specific) [Eubacterium
rectale ATCC 33656]
gi|291524775|emb|CBK90362.1| RNA methyltransferase, RsmD family [Eubacterium rectale DSM 17629]
gi|291528904|emb|CBK94490.1| RNA methyltransferase, RsmD family [Eubacterium rectale M104/1]
Length = 183
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++++ G AR L + +G D RP + K F+++Q PG + LDL++G+G
Sbjct: 1 MRIIAGTARSLPLKTIEGKDTRPTTDKTKETLFNVMQFD-------VPGAYFLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+G+EA+SRG + FVE + ++ + N+ +T F VS + T + E G
Sbjct: 54 QIGLEALSRGAAYAVFVE-NSRKAASCIEDNIHFTKFDKVSRLMMTDAVTAVRTLE---G 109
Query: 228 KDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
K FD + + PPY ++ EVL+ +S S ++ D+ IVVE TD
Sbjct: 110 K-YKFDIVFMDPPYNKELEKEVLIT-LSDSDILKDDTLIVVEASNDTDF 156
>gi|312127711|ref|YP_003992585.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
gi|311777730|gb|ADQ07216.1| methyltransferase [Caldicellulosiruptor hydrothermalis 108]
Length = 184
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVREVTFVEKDVRCI-NLIKENLKNLDLLKRARIIKGDVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE L D L +++
Sbjct: 109 NCPVFDIIFLDPPYKSDYAKECISEIIENNRINENGLIIVESNLEFQYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|363899470|ref|ZP_09325979.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|395208339|ref|ZP_10397580.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
gi|361958510|gb|EHL11809.1| RsmD family RNA methyltransferase [Oribacterium sp. ACB1]
gi|394705920|gb|EJF13444.1| RNA methyltransferase, RsmD family [Oribacterium sp. ACB8]
Length = 190
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G ARR L +P G+D RP + +K F+ILQ L LDL++G+G+
Sbjct: 1 MRVIAGTARRINLKTPDGLDTRPTQDRIKETLFNILQF------DLEGQDVLDLFAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI----HTVRVETFLERAEQ 224
+GIEA+SRG F + V + NLE T F + + + + + + L
Sbjct: 55 LGIEALSRGAKRAVFCDAARQAVL-CIEENLEKTHFKEQALVLPGDYNGAINSLLR---- 109
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
KD F + + PPY E + ++ V +++ VVE L D
Sbjct: 110 ---KDYHFGLVFMDPPYGRELAEKALLRLKDKPFVDENTIFVVEAGLEEDF 157
>gi|170076656|ref|YP_001733294.1| methyltransferase [Synechococcus sp. PCC 7002]
gi|169884325|gb|ACA98038.1| methyltransferase, putative [Synechococcus sp. PCC 7002]
Length = 179
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 130 RPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
RP + V+ A F+I Q GC RWLDL +G+GS+G EA+ RG +V +E +
Sbjct: 18 RPTLAKVREAIFNIWQGQVAGC-------RWLDLCAGSGSMGAEALCRGAVKVVGIEKNS 70
Query: 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV 248
I W V + + L+R E G+ FD + PPY A Y+
Sbjct: 71 ---QACRIIQENWQKVAKVDQEYQILKGDLLKRLENLGGE--TFDLIYFDPPYAAKLYDR 125
Query: 249 LMAQISKSALVGKDSFIVVEY-PLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
++A+I L+ + VEY P L+ G L K++ +G+T +A Y
Sbjct: 126 VLAKIVDLELLAPSGELAVEYDPKLWQPLELPG-LELFKEKNYGKTAIAFY 175
>gi|160944906|ref|ZP_02092133.1| hypothetical protein FAEPRAM212_02422 [Faecalibacterium prausnitzii
M21/2]
gi|158444090|gb|EDP21094.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
M21/2]
Length = 191
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ G+AR ++L + G DV RP + VK A F I+Q L R LDLY+G+G
Sbjct: 1 MRVIAGEARGRRLEALPGTDVTRPTLSQVKEAMFSIVQF------DLPGARVLDLYAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG + F++ VS +++ N + G D S ++ FL +
Sbjct: 55 QLGIEALSRGAARCVFLDESREAVS-IVMRNCKACGVFDRSRVNIGEAARFLSACRE--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PP+ E ++ + K V ++ E + G L K
Sbjct: 111 ---QFDLVLLDPPFRGGTLEKILPAVEKC--VAPGGIVLCESETGIVLPAQAGSLTLQKQ 165
Query: 288 RRFGRTHLAIY 298
++G+ L Y
Sbjct: 166 YKYGKVLLWKY 176
>gi|383753446|ref|YP_005432349.1| putative methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365498|dbj|BAL82326.1| putative methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 194
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGT 166
++++ G AR +L +PKG +V RP + VK + F+IL PGR LD+++GT
Sbjct: 1 MRIITGSARGCRLKAPKGAEVTRPTADRVKESLFNIL-------GDFVPGRKVLDIFAGT 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG FV+ + ++ NL T + ++ V F E + Q
Sbjct: 54 GNLGLEALSRGAQSAVFVDR---ATAKLIEENLRLTRLAEKGTVRGGDV--FAELSRQAA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKS-ALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G F + PPY ++ + QI +S L+ + +VVE+ + L +
Sbjct: 109 GG-AEFTLIFCDPPYHQGLWQRALCQIDQSEGLMAEAGILVVEHGADENDYPELDRLQLV 167
Query: 286 KDRRFGRT 293
+RR+G T
Sbjct: 168 HNRRYGHT 175
>gi|162456342|ref|YP_001618709.1| methylase [Sorangium cellulosum So ce56]
gi|161166924|emb|CAN98229.1| putative methylase [Sorangium cellulosum So ce56]
Length = 181
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ ++L +P+G RP + V+ A F L G DLY+GTG+
Sbjct: 1 MRVIAGRLGGRRLAAPRGEGTRPTADRVREALFSSLGDVTGALVC-------DLYAGTGA 53
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE +S VL NL G + + + V +ERA + +
Sbjct: 54 LGIEALSRGARRAVFVESGRPALS-VLRENLAALGLDEAARV----VPLPVERALELLRG 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKS--ALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+GPFD + PPY + A L+ + +V+E+ R + G L
Sbjct: 109 EGPFDLALLDPPYAVLAKAAAAAARLAGPLGLLAPEGRLVLEHARRDPSPEIAG-LTCAA 167
Query: 287 DRRFGRTHLAIY 298
R +G T ++ Y
Sbjct: 168 SRAYGDTAVSFY 179
>gi|268319679|ref|YP_003293335.1| hypothetical protein FI9785_1207 [Lactobacillus johnsonii FI9785]
gi|262398054|emb|CAX67068.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 182
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK ++ L + K RP + VKG+ F+ L G+ LDLY+G+G+
Sbjct: 1 MRIIAGKYAKRNLHTLKSNATRPTSDKVKGSLFNSLGQF------FDGGQVLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V++ V+ N+E T + ++ RA + +
Sbjct: 55 LGIEAVSRGYDGAVLVDISGQACQ-VIKKNVELTK--EEERFRVLKCSD--NRAIKILQD 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G FD + + PPY +M ++ ++ L+ + + +V E ++ + G + IKD
Sbjct: 110 EGKKFDLVFLDPPYAKQKIVKIMTKLLENNLLNEKALVVAETDEHDELPEVSGFSI-IKD 168
Query: 288 RRFGRTHLAIYGPD 301
+ GRT + +Y D
Sbjct: 169 HQLGRTKVKVYERD 182
>gi|83859465|ref|ZP_00952986.1| hypothetical protein OA2633_13710 [Oceanicaulis sp. HTCC2633]
gi|83852912|gb|EAP90765.1| hypothetical protein OA2633_13710 [Oceanicaulis alexandrii
HTCC2633]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + + + +PKG RP + V+ + F+ L A L R +DL++G+G+
Sbjct: 1 MRIVAGAHKGRAITAPKGDKTRPTTDRVRESVFNKLTHAA-WGVELEGLRVMDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG S FVE DP + N++ + +H R T L +G
Sbjct: 60 LGLEAISRGASFALFVETDP-AARGAIRTNVDSLQLFGCTKLHR-RSATDLGPKPANMGT 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PFD + + PPY + +A++ + A V D+ V+E
Sbjct: 118 --PFDLVFLDPPYAQGLGDTALARLVEGAWVKDDAIAVLE 155
>gi|408790479|ref|ZP_11202098.1| Ribosomal RNA small subunit methyltransferase D [Lactobacillus
florum 2F]
gi|408520203|gb|EKK20291.1| Ribosomal RNA small subunit methyltransferase D [Lactobacillus
florum 2F]
Length = 184
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R ++L+ G RP + V+ A F+++ S R G +LDLY+G+G+
Sbjct: 1 MRIIGGTHRGQRLVPVAGRQTRPTTDKVREALFNMI------GPSFRGGHFLDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV--LIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
V +EA+SRG + ++ V + NL+ T + ++ T E
Sbjct: 55 VALEALSRGVDQAVAIDRQYQAVKTMEKNAANLKIT-----KTKFQIKKMTVARAIEIMA 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G + FDY+ + PPY ++ + ++++ L+ + ++ E R L ++
Sbjct: 110 GSETQFDYVFLDPPYAQQQMQIDLDKLAQQGLLKPAALVICETD-RATKLPKVVDYSMVR 168
Query: 287 DRRFGRTHLAIY 298
+ +G T + IY
Sbjct: 169 QKSYGLTTITIY 180
>gi|88608384|ref|YP_506096.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
gi|88600553|gb|ABD46021.1| putative methyltransferase [Neorickettsia sennetsu str. Miyayama]
Length = 198
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 19/198 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEETHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + V +++D + + NLE D ++ + + E ++
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDKITVISRDIVKLEESGKR---- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK-------DSFIVVEYPLRTDMLDTCGC 281
+D + + PPY ++ +QI++ + G D IV+ R ++ +
Sbjct: 113 ---YDVVFMDPPYNEKTHKYRASQITEKSFTGLHERGWLCDGSIVILEKHRKEIFELKHR 169
Query: 282 LVKIKD-RRFGRTHLAIY 298
++ D RR+G + L +
Sbjct: 170 AFELIDSRRYGMSELLTF 187
>gi|33861615|ref|NP_893176.1| hypothetical protein PMM1059 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634192|emb|CAE19518.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 195
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 26/200 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ +L S + +D RP +V+ A F+IL++ ++ WLDL+SGTG+
Sbjct: 5 LRLIGGR----RLESSRNIDTRPTTLMVREAIFNILKN------TVENSNWLDLFSGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV--SSIHTVRVETFL------E 220
V EA + G ++ +E + S + + NL +D + I + + + E
Sbjct: 55 VSCEAYNHGAKKIVAIEKNK-NNSKICLKNLHSLQNIDNRKNDIEVICKDVLIWTKPNTE 113
Query: 221 RAEQFVGKDG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
R F D FD++ + PPY A +E+++ QI + K + ++ E+ L D+
Sbjct: 114 R-NIFSSNDFNKIKFDFIFLDPPYRANYHELVLNQIFNCNFIKKGTIVICEHSLDMDI-- 170
Query: 278 TCGCLVKIKD-RRFGRTHLA 296
L I D R +G++ L
Sbjct: 171 KTNILWNIYDVRTYGQSKLT 190
>gi|262276795|ref|ZP_06054588.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
gi|262223898|gb|EEY74357.1| RNA methyltransferase, RsmD family [alpha proteobacterium HIMB114]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + KK+L P RP+ + VK F++L+ + + + + LD +SG+GS
Sbjct: 1 MRIISGNKKGKKILLPNPEITRPLKDNVKENIFNVLKHSRNFQINFQGIKVLDFFSGSGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
G+E ISRG S V F E+D SN+L NL + + ++ + F + +
Sbjct: 61 FGLECISRGASNVKFFEIDSK-TSNILFRNLSNN--FEKNKYEIIKKDFFNIDKKHLIET 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD 277
P D + + PPY + ++ I ++L ++ V+ + +T +++
Sbjct: 118 YRP-DIVFLDPPYKIKRFSEILNFI--NSLYNLNNLTVILHVEKTKIIN 163
>gi|126664257|ref|ZP_01735249.1| putative methyltransferase [Flavobacteria bacterium BAL38]
gi|126623789|gb|EAZ94485.1| putative methyltransferase [Flavobacteria bacterium BAL38]
Length = 192
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 92/169 (54%), Gaps = 15/169 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + +L + LDL+SGTG+
Sbjct: 1 MRIISGKHKGRRLVAPKNLPVRPTTDMCKESLFNILNNY----FNLHGLKVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ E SRG + V+ D V+ + E LD+S+I + V FLE+++
Sbjct: 57 ISYEFASRGAGPITSVDGDMGCVNFIKKTATELD--LDISAIKS-DVFKFLEKSK----- 108
Query: 229 DGPFDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+D + PPY ++E ++ +I ++ L+ ++ ++VE+ T +
Sbjct: 109 -ATYDIIFADPPYDIGQENFEKIIQEIFENELLDEEGMLIVEHSKHTKL 156
>gi|410658796|ref|YP_006911167.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|410661785|ref|YP_006914156.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
gi|409021151|gb|AFV03182.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
DCA]
gi|409024141|gb|AFV06171.1| Ribosomal RNA small subunit methyltransferase D [Dehalobacter sp.
CF]
Length = 187
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L + KGMD RP + VKGA F+IL + R LDL++GTG+
Sbjct: 1 MRIISGQWKGRNLKTVKGMDTRPTSDKVKGAIFNIL------AGKVMNARVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG VE D + + N E G +SI + F ++A Q
Sbjct: 55 LSFEALSRGARHAVLVEKDTSALETIR-KNAEILGAAPRTSILRMDAMNFFKQAVQ---- 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + +A + ++ I++E + D L R
Sbjct: 110 -ERFDLIFLDPPYRRGLANMALAYLQTHPVLNPSGVIIIETSSDETIDDAIDPLEIRLTR 168
Query: 289 RFGRTHL 295
+G T L
Sbjct: 169 EYGDTRL 175
>gi|258652100|ref|YP_003201256.1| methyltransferase [Nakamurella multipartita DSM 44233]
gi|258555325|gb|ACV78267.1| methyltransferase [Nakamurella multipartita DSM 44233]
Length = 189
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 22/200 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+ R ++L+ PKG+ RP E V+ A LQ+ GG L R LDL++GTG
Sbjct: 1 MTRIVAGRWRGRRLVVPKGVGTRPSAERVREALAGSLQATGG----LVGARVLDLWAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH-----TVRVETFLERA 222
++G+E SRG S FVE D ++ + +V ++H T+ V A
Sbjct: 57 ALGLELASRGASSAVFVEKDRSALATLRT---------NVDTLHEDGGPTLTVLAADVTA 107
Query: 223 EQFVGK-DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
+ GPFD + PPY V ++A + ++ + ++VE R+ +
Sbjct: 108 PALTARLGGPFDIVLADPPYDLDGASVRGVLAALVAGGVLADHADLIVERSARSGEVSWP 167
Query: 280 GCLVKIKDRRFGRTHLAIYG 299
L ++ R++G T L YG
Sbjct: 168 EPLTAVRVRKYGDTLL-CYG 186
>gi|421276761|ref|ZP_15727581.1| RNA methyltransferase, RsmD family [Streptococcus mitis SPAR10]
gi|395876042|gb|EJG87118.1| RNA methyltransferase, RsmD family [Streptococcus mitis SPAR10]
Length = 179
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLDGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D N++ N+ T + S +++E+ RA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRR-AQNIVAENIRMTK--ETSKFQLLKMES--SRALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
DG FD + + PPY E +++ I K A L +D +V E ++ + CL
Sbjct: 108 DGVFDLIFLDPPYAK---EQIVSDIEKMAERNLFSEDVMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|348169244|ref|ZP_08876138.1| methyltransferase (methylase) [Saccharopolyspora spinosa NRRL
18395]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 21/194 (10%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
V G R+ + P+G RP E V+ A F L+S L R LDLY G+G++G
Sbjct: 5 VAGSVGGRRIDVPPRG--TRPTSERVREALFSALESV----IELTGARVLDLYGGSGALG 58
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG FVE D + +L N GF + VRVE +AE +G
Sbjct: 59 LEALSRGAGHATFVESDR-RAAQLLRRNAASLGFRE------VRVEQ--AKAETLIGTPA 109
Query: 231 --PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
PFD + PPY ++ ++ + ++ S ++VE +R+ D L ++
Sbjct: 110 AQPFDVVLADPPYDLAPEQLQRVLVGLVQNGWTAPGSLVIVERAVRSGEPDWPPPLQAMR 169
Query: 287 DRRFGRT--HLAIY 298
+R+G T H A++
Sbjct: 170 TKRYGDTAVHWAVH 183
>gi|265755931|ref|ZP_06090398.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263234009|gb|EEZ19610.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 186
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+F+ K + FD++ PPY D E + +I +S ++ +D +V+E+
Sbjct: 105 RFIDKCNEQFDFIFADPPYALKDLESIPTRIFESGILKEDGLLVLEH 151
>gi|78189400|ref|YP_379738.1| hypothetical protein Cag_1438 [Chlorobium chlorochromatii CaD3]
gi|78171599|gb|ABB28695.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 14/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+L G+ R +K+ VRP VK + FD L L LD+++G GS
Sbjct: 1 MQILAGQFRGQKIGRSASAAVRPCSSRVKKSLFDTL----AVRMDLEDAHVLDIFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + V FV+ + L G + SI FL R
Sbjct: 57 LGFEALSRGAASVTFVDRFHESL-KALKSTAAKLGVTNKVSIVNADALAFLGRTTN---- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY DY L+ I + +L+ +D +++E+ + + T L +
Sbjct: 112 --QFDLLFCDPPYAWADYHALLELIFRRSLLAEDGLMLMEHSTQHNFSHTPEYLFH---K 166
Query: 289 RFGRTHLAIYGP 300
+G T ++ + P
Sbjct: 167 DYGMTRVSFFQP 178
>gi|302871972|ref|YP_003840608.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
gi|302574831|gb|ADL42622.1| methyltransferase [Caldicellulosiruptor obsidiansis OB47]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGAKEVVFVEKDVRCI-NLIKENLKNLNLLKRARIIKADVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE + D L +++
Sbjct: 109 NCPVFDIIFLDPPYKSGYAKECISEIIENNRINENGLIIVESNVEFRYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|115522954|ref|YP_779865.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115516901|gb|ABJ04885.1| putative methyltransferase [Rhodopseudomonas palustris BisA53]
Length = 203
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V+GG+ + + + SP +RP + ++ A F+IL A G P + R +DL++GTG
Sbjct: 19 LMRVVGGRLKGRNIASPSSQAIRPTQDRLREALFNILAHAYGNP--MLDARVIDLFAGTG 76
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG S FV+ + +L N+E G + ++ R T L A
Sbjct: 77 ALGIEAVSRGASFALFVD-NGAEARALLRQNVEALGLGGTTKVYR-RDATNLGPAHPIE- 133
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF PPY + +A + + D+ +VVE
Sbjct: 134 ---PFALAFCDPPYRMKLADKALASLRDGGWLVPDALVVVE 171
>gi|29829212|ref|NP_823846.1| RNA methylase [Streptomyces avermitilis MA-4680]
gi|29606318|dbj|BAC70381.1| putative RNA methylase [Streptomyces avermitilis MA-4680]
Length = 195
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G+A ++L P G RP + + F Q+ G P L R LDLY+G+G
Sbjct: 1 MTRVIAGRAGGRRLAVPPGNGTRPTSDRAREGLFSTWQALLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE D V V +V S+ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHTLLVEADTRAVRTVR---------ENVKSLGLPGAEVRAGKAEQIVQ 109
Query: 227 --GKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P+D + + PPY D E+L+ + L G ++ + VE R
Sbjct: 110 TPASADPYDIVFLDPPYAVSDDDLREILLTLRTGGWLAG-EALVTVERSTRGGEFRWPDG 168
Query: 282 LVKIKDRRFG 291
I+ RR+G
Sbjct: 169 FEPIRSRRYG 178
>gi|256397124|ref|YP_003118688.1| methyltransferase [Catenulispora acidiphila DSM 44928]
gi|256363350|gb|ACU76847.1| methyltransferase [Catenulispora acidiphila DSM 44928]
Length = 202
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G AR ++L P G RP + + F L S G + L LDL++G+G
Sbjct: 1 MTRVIAGAARGRRLAVPPGDGTRPTGDRAREGLFSALASEFGGLSGLS---VLDLFAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG +V VE D V LI +++++ +RAE+ V
Sbjct: 58 ALGLEALSRGAEKVLLVEADRRVTK--LIAQ-------NIATVDLPGARVVADRAERAVA 108
Query: 228 ----KDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLR 272
K+ PFD + + PPY D EV ++ + + + D+ V+E R
Sbjct: 109 GEVPKEAPFDLVLLDPPYAVADGEVVTILTALGEGGWLAPDAVAVLERSAR 159
>gi|49478885|ref|YP_037992.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49330441|gb|AAT61087.1| possible methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 188
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VK + F+++ G LDL+ G+G
Sbjct: 1 MRVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGP------YFDGGIALDLFGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ D + + NLE + + ++ E + + + +
Sbjct: 55 LGIEAISRGIDKAIFVDRDNKAIKTIH-QNLESCRIQEQAEVYRNDAERAI---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L++ + + L+ I+ E+ + ++ G L+K++
Sbjct: 111 EMSFDLILIDPPYKDQKIVSLISVMDQHGLLHNAGLIMAEHGNDVVLPESIGRLIKVRAE 170
Query: 289 RFGRTHLAIY 298
++G T ++IY
Sbjct: 171 KYGITAISIY 180
>gi|398818237|ref|ZP_10576829.1| RNA methyltransferase, RsmD family [Brevibacillus sp. BC25]
gi|398028005|gb|EJL21529.1| RNA methyltransferase, RsmD family [Brevibacillus sp. BC25]
Length = 188
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G+ R ++L + G RP + VK + F+++ G W LDLY+GTG
Sbjct: 1 MRVIAGEHRGRRLAAVPGKGTRPTTDKVKESIFNMI-------GPYFDGGWALDLYAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE++SRG FVE D + V+ N+ D + ++ + + +
Sbjct: 54 GLGIESLSRGADRAVFVERDHKAFA-VVKQNVSTCRLDDYAELYRMDADRAI---RTLST 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY + + + ++ ++IV E+ + DT G VK +
Sbjct: 110 RNQKFDLVFLDPPYAQQKIVEEIEMLQELGMLADGAWIVAEHDIADSFPDTIGHCVKDRA 169
Query: 288 RRFGRTHLAIY 298
++G T + +Y
Sbjct: 170 AKYGDTAVTVY 180
>gi|222529217|ref|YP_002573099.1| methyltransferase [Caldicellulosiruptor bescii DSM 6725]
gi|222456064|gb|ACM60326.1| methyltransferase [Caldicellulosiruptor bescii DSM 6725]
Length = 184
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P + D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNKNLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVREVTFVEKDVRCI-NLIKENLKNLDLLKRARIIKGDVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE L D L +++
Sbjct: 109 NCPVFDIIFLDPPYKSGYAKECISEIIENNRISENGLIIVESNLEFRYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|313678727|ref|YP_004056467.1| methyltransferase [Mycoplasma bovis PG45]
gi|312950811|gb|ADR25406.1| putative methyltransferase [Mycoplasma bovis PG45]
Length = 182
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F + LDL++G+G
Sbjct: 1 MIRVISGKYRHRHLNWPKSKDIRPTMDKVREAIF------SSIRMQIEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IE++S + VE D V + + +++S+ ++ F A F+
Sbjct: 55 SMAIESVSNYAMKAVAVEKDKEAVKVI---------YENINSLQINNIDVFNMNALSFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
K G FDY+ V PPY +Y++L + I + + + I+VE + G +
Sbjct: 106 SKTGRIFDYIFVDPPYA--EYDLLNECLRLIKTNNFLSTNGLIIVETNNNNKIEIPQGLM 163
Query: 283 VKIKDRRFGRTHL 295
++ K++++G+ H+
Sbjct: 164 IQ-KNKKYGKVHI 175
>gi|389815998|ref|ZP_10207235.1| methylase yhhF [Planococcus antarcticus DSM 14505]
gi|388465492|gb|EIM07809.1| methylase yhhF [Planococcus antarcticus DSM 14505]
Length = 191
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVVAGSVKGIPLKAVTGNSTRPTTDKVKESIFNMI------GPFFDGGYALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V F + D V + NLE T D + I+ ERA + + K
Sbjct: 55 LGIEALSRGIDRVIFTDKDKRAVETIQ-ANLEKTRLSDRAEIYRADA----ERAVKAIKK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G + + PPY LM + + +V KD+ IV E+ ++ D + K
Sbjct: 110 NGIQARLVFLDPPYHMTKSYDLMDKAGELEIVTKDAIIVCEHDREVELPDRTRYFERYKK 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ELYGSTIISIY 180
>gi|374308570|ref|YP_005055001.1| RNA methyltransferase, RsmD family [Filifactor alocis ATCC 35896]
gi|291166898|gb|EFE28944.1| RNA methyltransferase, RsmD family [Filifactor alocis ATCC 35896]
Length = 187
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + KKL +P +RP ++ V+ A F ++ A P+S LDL+ GTG
Sbjct: 1 MRIIAGKWKGKKLNTPPDSRIRPTLDRVREAIFSMI--AFDIPSS----DVLDLFGGTGV 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG + V+ V+ ++ N+ G ++I FL + + K
Sbjct: 55 MSLEALSRGANSATIVDNHKDSVT-LIKKNVGLCGANAQTTIFCGDYRDFLAKINKTGNK 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + V PPY + ++ +I K+ + G++ +++E + +KIK++
Sbjct: 114 ---FDIIFVDPPYQGEMVKEVLEEIDKNDVCGRNGIVILETARDFTPPEQTQHFIKIKEK 170
Query: 289 RFGRTHLAIY 298
+ +T +++Y
Sbjct: 171 NYSKTKISVY 180
>gi|163758413|ref|ZP_02165501.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
gi|162284702|gb|EDQ34985.1| hypothetical protein HPDFL43_02270 [Hoeflea phototrophica DFL-43]
Length = 187
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + + +PK +RP + + + F+IL P +L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSIAAPKTSSIRPTTDRTRESLFNILSHT--YPEALDGVRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC FVE V+ N+E G R F A +
Sbjct: 59 LGLEALSRGCRTALFVE-SGVEGRGVIQKNIETLGLQG-------RARLFRRDATKLGPA 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
G GPF + PPY E + ++ + + I++E + + D ++
Sbjct: 111 GTSGPFALVFADPPYGRELGEKALVSAARGGWLEDGALIILE-EVASAEPDPGNAFTFLE 169
Query: 287 DRRFGRTHLAIY 298
R FG T + +
Sbjct: 170 SRTFGDTTMRFF 181
>gi|414163862|ref|ZP_11420109.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
gi|410881642|gb|EKS29482.1| RsmD family RNA methyltransferase [Afipia felis ATCC 53690]
Length = 185
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRMRGRNIASPASKDIRPTQDRLRESVFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGASFALFID-NGAEARALLRNNVEALGLGGVTKVYR-RDATQLGPAHPME-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E +A + + + + +VVE
Sbjct: 115 --PFTLAFLDPPYGKGLAEKALASLREGKWLVPGALVVVE 152
>gi|386728803|ref|YP_006195186.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
gi|418978634|ref|ZP_13526434.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|379993458|gb|EIA14904.1| Methyltransferase [Staphylococcus aureus subsp. aureus DR10]
gi|384230096|gb|AFH69343.1| Methyltransferase [Staphylococcus aureus subsp. aureus 71193]
Length = 183
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 4 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 56 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLNLEAQSEVYKNNADRALKALSK---R 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 112 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 152
>gi|329768889|ref|ZP_08260317.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
gi|328837252|gb|EGF86889.1| RsmD family RNA methyltransferase [Gemella sanguinis M325]
Length = 183
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLDC---------EGRVLDLFGGTGG 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVV----SNV---LIPNLEWTGFLDVSSIHTVRVETFLER 221
+GIE++SRG V F++ + SN+ IPN E+ + +R
Sbjct: 52 LGIESLSRGADYVTFIDGSNNAIKVIRSNIEKCRIPNSEYDIY-----------RNDYKR 100
Query: 222 AEQFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
A + +GK G FD + + PPY ++ I ++ + IV E + +
Sbjct: 101 ALKILGKKGEKFDLIFLDPPYDKGLINQAISSILENDICSDGCLIVCEKSVDEVVESKFE 160
Query: 281 CLVKIKDRRFGRTHLAIY 298
L +K++++G T++ I+
Sbjct: 161 KLELVKEKKYGITNIIIF 178
>gi|317129321|ref|YP_004095603.1| methyltransferase [Bacillus cellulosilyticus DSM 2522]
gi|315474269|gb|ADU30872.1| methyltransferase [Bacillus cellulosilyticus DSM 2522]
Length = 182
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + + + G RP + VK + F+++ G LDLY G+G+
Sbjct: 1 MRVISGKFKGLHMKAVPGQSTRPTTDKVKESIFNMV------GPYFDGGSMLDLYGGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG + ++ D + + + N++ D + R E RA + K
Sbjct: 55 IAIEALSRGIEKAVIIDRDRKAIETIYM-NIKSCKIED--EVEVYRTEA--SRALNALRK 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY E + I++ L+ K IVVE+ ++ ++ L KI++
Sbjct: 110 KGSTFDLIFLDPPYLKQRLEEELLFIAEHRLLDKLGKIVVEHAATVELNESYSDLTKIRE 169
Query: 288 RRFGRTHLAIY 298
R+G T ++IY
Sbjct: 170 ERYGDTIISIY 180
>gi|387602396|ref|YP_005733917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|404478460|ref|YP_006709890.1| methylase [Staphylococcus aureus 08BA02176]
gi|418309912|ref|ZP_12921463.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|283470334|emb|CAQ49545.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus ST398]
gi|365238035|gb|EHM78874.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21331]
gi|404439949|gb|AFR73142.1| putative methylase [Staphylococcus aureus 08BA02176]
Length = 180
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLNLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|404368530|ref|ZP_10973880.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
gi|313687825|gb|EFS24660.1| RsmD family RNA methyltransferase [Fusobacterium ulcerans ATCC
49185]
Length = 182
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ K++ S KG D RP + +K + F I+ A P S+ +LDL+SG+GS
Sbjct: 1 MKIIAGDAKNKRIKSRKGTDTRPTLGSMKESLFSII--APYVPDSV----FLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG +E D + + I N+ + D + + RA + +G+
Sbjct: 55 ISLEALSRGAKRAVMIEKDTEALKYI-IENVNTLEYEDRCRAY----KNDALRAIEILGR 109
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY ++ I K+ ++ I+ E+ + ++ + G + +
Sbjct: 110 KGEKFDIIFMDPPYKEEICTRVIKAIEKNGILADGGLIISEHHVFEELEEEIGEFKRADE 169
Query: 288 RRFGRTHLAIY 298
R++G+ + Y
Sbjct: 170 RKYGKKCITFY 180
>gi|206889225|ref|YP_002248645.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741163|gb|ACI20220.1| N6-adenine-specific methylase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 171
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188
VRP +V+ A FDIL+ + ++DLY+G G VG+EA+ RG +EV FVE DP
Sbjct: 12 VRPTPAIVRKAIFDILRD-------VEDKIFIDLYAGKGFVGVEALKRGANEVIFVEKDP 64
Query: 189 WVVSNVLIPN-LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE 247
V + I N L+ D + ++ + +FL+ + +D + PPY + + E
Sbjct: 65 --VLCIFIKNSLQKKKLSDKARVYNMDAVSFLQDSSH------EYDIIFADPPYESGELE 116
Query: 248 VLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
+ L+ + +++++ + + L K R+G T L +Y
Sbjct: 117 KIFKIFENKNLIKEGGVLILQHYKNESLREKLKGLKIHKCYRYGDTFLTVY 167
>gi|315611866|ref|ZP_07886785.1| RsmD family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
gi|315316044|gb|EFU64077.1| RsmD family RNA methyltransferase [Streptococcus sanguinis ATCC
49296]
Length = 179
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +VS +++E ERA + V
Sbjct: 55 LSIEAVSRGMSHAVLVERDRK-AQAIIAENIQMTK--EVSKFQLLKMEA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
GPF + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 108 KGPFGLVFLDPPYAK---EQIVADIEKMAERNLFSEEIMVVCETDKSVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|116750413|ref|YP_847100.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116750455|ref|YP_847142.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116699477|gb|ABK18665.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116699519|gb|ABK18707.1| putative methyltransferase [Syntrophobacter fumaroxidans MPOB]
Length = 185
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 17/193 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++++ G+ ++L SP +RP ++ V+ A F I+ A PG R LDL++GTG
Sbjct: 1 MRIVAGQFGGRRLRSPGDARIRPTIDRVREAVFSII-------APHVPGARVLDLFAGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+ G+EA+SRG S FV+ V ++ N+ G D + + V L R +
Sbjct: 54 AFGLEALSRGASRAVFVDQSRDAV-RIIEENIARCGVQDRARVILAPVRKALLRLAE--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC--GCLVKI 285
+ G FD + + PPY E + ++ K + D+ ++ E+ + D+L T VK
Sbjct: 110 EGGSFDLVFMDPPYGKGCLEASLPRLGK--VTHSDTLVIGEHHAK-DVLPTTPQEGWVKT 166
Query: 286 KDRRFGRTHLAIY 298
++RR+G T ++ +
Sbjct: 167 EERRYGDTRISFF 179
>gi|418966560|ref|ZP_13518291.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK616]
gi|383347138|gb|EID25140.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK616]
Length = 179
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFVG 227
+ IEA+SRG + VE D ++ N++ T +V ++++ ERA EQ G
Sbjct: 55 LSIEAVSRGMASAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQVAG 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVK 284
K FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 110 K---FDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGI 163
Query: 285 IKDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 164 WKEKNYGISKVTVY 177
>gi|332653473|ref|ZP_08419218.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
gi|332518619|gb|EGJ48222.1| RNA methyltransferase, RsmD family [Ruminococcaceae bacterium D16]
Length = 186
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGR-WLDLYSGTG 167
++V+ G AR ++L +GM+ RP + VK A F+I+Q PGR LDL+ GTG
Sbjct: 1 MRVISGTARGRRLGELEGMETRPTTDRVKEALFNIVQFE-------VPGRKILDLFGGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG FV+ V+ ++ NL+ T + FL+ +
Sbjct: 54 QLGIEALSRGAEHCTFVDQRSDAVT-LIKNNLKVTDLAGKGRVVQGDSLGFLQTCGE--- 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
FD + + PPY A E + I+ ++ + +V E L + + K+
Sbjct: 110 ---QFDVIFLDPPYRADLLERAVEAIAAFDILREHGIMVCESALDKVLPTLNAPYERGKE 166
Query: 288 RRFGRTHLAIY 298
R+G+ L IY
Sbjct: 167 YRYGKIKLTIY 177
>gi|86609190|ref|YP_477952.1| methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557732|gb|ABD02689.1| putative methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 183
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++ L +P G+ RP V+ A F+ILQ GC RWLDL G G+VG EA+ +
Sbjct: 8 KRALQTPAGLGTRPTPGRVRQALFNILQGQVEGC-------RWLDLCCGAGTVGAEALCQ 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVET--FLERAEQFVGKDGPFD 233
G + V +E+ I W + S ++ + L R PFD
Sbjct: 61 GAAFVAGIEI---AAPACRIIRANWAKVAQLGQSFQVIQGDARKLLSRGLNLE----PFD 113
Query: 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293
Y+ PPY A Y L+ I G ++VE+ + D G L++ R +G+T
Sbjct: 114 YVYFAPPYEAGLYAPLLPLIPPLLKPGGT--LIVEHRSGQKLPDQVGSLLRFDQRTYGQT 171
Query: 294 HLAIY 298
LA Y
Sbjct: 172 ALAFY 176
>gi|392394769|ref|YP_006431371.1| RsmD family RNA methyltransferase [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525847|gb|AFM01578.1| RNA methyltransferase, RsmD family [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 180
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 13/133 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + GM+ RP + +KGA F++L+ + R LDL+SGTG+
Sbjct: 1 MRIIAGYYRGQRLKTVPGMNTRPTADKIKGAIFNVLRE------KIAGARVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ +EA+SRG E +E +++ N+E G ++ + + T+ T+LE+ + V
Sbjct: 55 LALEALSRGAKEAVLIE-KSHTAQHIIRENIEHMG-VENARLVTMDAFTYLEQHGEEV-- 110
Query: 229 DGPFDYMSVTPPY 241
FD + + PPY
Sbjct: 111 ---FDLIFIDPPY 120
>gi|418461490|ref|ZP_13032562.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
gi|359738360|gb|EHK87248.1| putative methyltransferase [Saccharomonospora azurea SZMC 14600]
Length = 181
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 113 GGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIE 172
GG+ R + PKG RP E+V+ A F L++A L R LDLYSG+G++G+E
Sbjct: 6 GGRTLR---VPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGSGALGLE 56
Query: 173 AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232
A+SRG E FVE D +++L N+ G V + RVE+ + PF
Sbjct: 57 ALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVVAEPAGT-----PF 108
Query: 233 DYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVE 268
D + PPY AVD E V++ ++ + + ++ +VVE
Sbjct: 109 DLVLADPPY-AVDAETLGVVLTRLVDNGWLADNALVVVE 146
>gi|150016043|ref|YP_001308297.1| methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149902508|gb|ABR33341.1| putative methyltransferase [Clostridium beijerinckii NCIMB 8052]
Length = 185
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR KL+ P M+ RP ++ VK A F +Q P ++ +D+++GTGS
Sbjct: 1 MRIIAGRARGHKLIPPATMETRPTLDRVKEAMFSSVQMY--IPEAV----VVDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG SEV+ + V +L N+E F D + ++ + E + K
Sbjct: 55 LGLEAASRGASEVYLFDKSS-VTFPLLKENVESLKFQDFC--FPMNIDAY-EGLKNLAKK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M + + ++ D IV + ++ + + K +
Sbjct: 111 GKKFDIIFIDPPYCKEMIPEAMKIVKDNEILKNDGIIVTKIDTIEEIYEGYKDIRLTKSK 170
Query: 289 RFGRTHLAIY 298
++G T + Y
Sbjct: 171 KYGNTTVCYY 180
>gi|344995900|ref|YP_004798243.1| methyltransferase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964119|gb|AEM73266.1| methyltransferase [Caldicellulosiruptor lactoaceticus 6A]
Length = 184
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRRLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVREVTFVEKDMRCI-NLIKENLKNLDLLKRARIIKGDVLKFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE L D L +++
Sbjct: 109 NCPVFDIIFLDPPYKSYYAKECISEIIENNRINENGLIIVESNLEFRYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|171778740|ref|ZP_02919836.1| hypothetical protein STRINF_00688 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704810|ref|YP_005203269.1| RsmD family RNA methyltransferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282697|gb|EDT48121.1| RNA methyltransferase, RsmD family [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|374681509|gb|AEZ61798.1| RNA methyltransferase, RsmD family [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 182
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
L++V+ G + L + G RP + VKGA F+++ GR LDL+SG+G
Sbjct: 3 LMRVVAGNFGGRPLKTLDGKTTRPTTDKVKGAIFNMIGPF------FEGGRVLDLFSGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ IEAISRG E VE + + ++ N++ T H ++++ A + +G
Sbjct: 57 SLAIEAISRGMDEAVLVERNHQAQA-IITENIKMTK--AEKQFHLMKMD-----ANKAIG 108
Query: 228 -KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
GPFD + + PPY + + + ++ L+ +D IV E D+ + K
Sbjct: 109 VVKGPFDLVFLDPPYAKEEIVKNITDLEEAGLLSEDVMIVCETDKSVDLPEKISNFGIWK 168
Query: 287 DRRFGRTHLAIY 298
+ +G + + +Y
Sbjct: 169 QKTYGISKVTVY 180
>gi|158424015|ref|YP_001525307.1| hypothetical protein AZC_2391 [Azorhizobium caulinodans ORS 571]
gi|158330904|dbj|BAF88389.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 187
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GGK R + L +P RP + ++ + F++L A G A R LDL++GTG+
Sbjct: 1 MRIVGGKHRGRPLQAPASKATRPTTDRLRESLFNMLAHAYGDAAD--GARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + ++ N++ G + I E +G
Sbjct: 59 LGIEALSRGAVFALFVE-EAAEARALIRANVDALGLAGSTKIFRRDATALGE-----MGP 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
GP+D + PPY E +A + ++ ++VE +T +I+ R
Sbjct: 113 GGPYDLVFCDPPYGKGLAEAALASARDGGWLAPNALLIVEE--QTGAFTVPDGFEEIERR 170
Query: 289 RFGRTHLAIYGP 300
R+ + L P
Sbjct: 171 RYDDSELTFLQP 182
>gi|322690476|ref|YP_004220046.1| methylase [Bifidobacterium longum subsp. longum JCM 1217]
gi|320455332|dbj|BAJ65954.1| putative methylase [Bifidobacterium longum subsp. longum JCM 1217]
Length = 203
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVVLATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + +++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLAQLQKNRSWDASL--------KARVLVKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
EQ G G PFD + + PPY + L++ ++ + +++ I++E +R+D
Sbjct: 108 EQVAGGFGEPFDVIFIDPPYAYETAECNQLLSDLAAGSATNENTVIMLERSVRSDDPTAP 167
Query: 280 GCLVKIKDRRFGRTHL 295
G + R +G T +
Sbjct: 168 GGWQITESRNYGETAV 183
>gi|357401977|ref|YP_004913902.1| RNA methylase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386358039|ref|YP_006056285.1| RNA methylase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337768386|emb|CCB77099.1| putative RNA methylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365808547|gb|AEW96763.1| putative RNA methylase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 193
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G L R LDLY G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQALHG---PLTGARVLDLYGGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + V VE D V V+ N V ++ E +AE+ V
Sbjct: 58 AVGLEALSRGAAHVLLVEADARAV-RVIREN--------VRALGLPGAEVRAAKAEKVVA 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D E+ ++ ++ + D+ + VE R
Sbjct: 109 GPPPADPYDVVFLDPPYAVSDDELREILITLAAGGWLAADAMVTVERGTRGGQFHWPAGF 168
Query: 283 VKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 169 EGLRARRYGEGTL 181
>gi|408680978|ref|YP_006880805.1| Ribosomal RNA small subunit methyltransferase D [Streptomyces
venezuelae ATCC 10712]
gi|328885307|emb|CCA58546.1| Ribosomal RNA small subunit methyltransferase D [Streptomyces
venezuelae ATCC 10712]
Length = 193
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F ++ G L R DLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGNGTRPTSDRAREGLFSTWEAFHG----LDGARVADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VGIEA+SRG + VE +P + ++ +I E +AEQ V
Sbjct: 57 AVGIEALSRGAAHALLVEAEPRAAKTIR---------ENIRTIGLPGAELRTGKAEQIVT 107
Query: 227 --GKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D E+ ++ ++ + D+ + VE R
Sbjct: 108 GPAPAAPYDLVFLDPPYAVSDEELREILLTLASGGWLAADALVTVERSTRGGAFGWPAGF 167
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 168 EALRARRYG 176
>gi|95929550|ref|ZP_01312292.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
gi|95134247|gb|EAT15904.1| conserved hypothetical protein 95 [Desulfuromonas acetoxidans DSM
684]
Length = 189
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+AR K+L S +G+++RP + V+ A F L S G S LDL++GTG+
Sbjct: 1 MRIISGQARGKQLASVQGIEIRPTSDRVREALFSSLTSRLG---SFDGMEVLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++ N + + VE L++
Sbjct: 58 LGLEALSRGAAHGCFVDSGRQ-AQKLIHTNSAHCAMAQRCQLIALPVERALDKLR----- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + + +IS+ L+ I E T++ G +I +
Sbjct: 112 -GKFDLIFLDPPYRKGLVDTTITKISQLDLLKPHGLICAEEDKATEVQQVLGRYQRIDLK 170
Query: 289 RFGRTHLAIYG 299
+G T L ++
Sbjct: 171 TYGSTALHLFA 181
>gi|402831880|ref|ZP_10880551.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
gi|402280468|gb|EJU29176.1| RNA methyltransferase, RsmD family [Capnocytophaga sp. CM59]
Length = 179
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R K+L++PK + VRP M+ K + F+IL + L + LDL++GTG+
Sbjct: 1 MRIISGTHRGKQLIAPKNLPVRPTMDFAKESLFNILNNY----FFLDSIKVLDLFAGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQFV 226
+ E SRGC E+ V+ P V + T I V+ V T+L+R+
Sbjct: 57 ISYEFGSRGCPEITAVDSHPACVQYI-----RKTAEALAYPIEVVKSDVFTYLDRSL--- 108
Query: 227 GKDGPFDYMSVTPPYTAV--DYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+D + PPY E L+ + + L+ +D ++VE+ + + +
Sbjct: 109 ---SQYDVIFADPPYDIEPDSLERLIETVFERNLLSEDGLLIVEHSSKVHLEEDPHFQ-- 163
Query: 285 IKDRRFGRTHLAIYGPD 301
++RR+G T +I+ D
Sbjct: 164 -EERRYGGTTFSIFNND 179
>gi|390940251|ref|YP_006403988.1| RsmD family RNA methyltransferase [Sulfurospirillum barnesii SES-3]
gi|390193358|gb|AFL68413.1| RNA methyltransferase, RsmD family [Sulfurospirillum barnesii
SES-3]
Length = 191
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 111 VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170
++ GK + KKL+ P R ++KG+ FD LQ + +++++ G+GS+G
Sbjct: 10 IVAGKYKGKKLMLPSLESTRSTKAILKGSLFDTLQY------DIVDEVFVEVFGGSGSMG 63
Query: 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230
+EA+SRG +F+E D +L N E + +++H F F K
Sbjct: 64 LEALSRGAKHAYFIEKDKAAF-GILKRNCEAIDTMHTTALHGDSFIVFPSLISTFTCK-- 120
Query: 231 PFDYMSVTPPYTAVD-----YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
Y PP++ D YE ++ I+ + K FI +E+ ++ G +
Sbjct: 121 --AYFYFDPPFSIRDGMENVYENVLKLIA-AIPQEKAHFIAIEHMSELELPQNIGLFTRQ 177
Query: 286 KDRRFGRTHLAIY 298
K ++FG++ L+ Y
Sbjct: 178 KTKKFGKSSLSYY 190
>gi|339320706|ref|YP_004683228.1| DNA methylase [Mycoplasma bovis Hubei-1]
gi|392429780|ref|YP_006470825.1| DNA methylase [Mycoplasma bovis HB0801]
gi|338226831|gb|AEI89893.1| DNA methylase [Mycoplasma bovis Hubei-1]
gi|392051189|gb|AFM51564.1| DNA methylase [Mycoplasma bovis HB0801]
Length = 182
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ GK R + L PK D+RP M+ V+ A F + LDL++G+G
Sbjct: 1 MIRVISGKYRHRHLNWPKSKDIRPTMDKVREAIF------SSIRMQIEGKIVLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
S+ IE++S + VE D + + + +++S+ ++ F A F+
Sbjct: 55 SMAIESVSNYAMKAVAVEKDKEAIKVI---------YENINSLQINNIDVFNMNALSFLK 105
Query: 227 GKDG-PFDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
K G FDY+ V PPY +Y++L + I + + + I+VE + G +
Sbjct: 106 SKTGRIFDYIFVDPPYA--EYDLLNECLRLIKTNNFLSTNGLIIVETNNNNKIEIPQGLM 163
Query: 283 VKIKDRRFGRTHL 295
++ K++++G+ H+
Sbjct: 164 IQ-KNKKYGKVHI 175
>gi|375094021|ref|ZP_09740286.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
gi|374654754|gb|EHR49587.1| RNA methyltransferase, RsmD family [Saccharomonospora marina XMU15]
Length = 186
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 25/195 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+A + L P RP E V+ A F+ L++AG L R LDLY+G+G
Sbjct: 1 MTRIVAGRAGGRALRVPA-HGTRPTSERVREALFNALEAAG----ELDGARVLDLYAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLER-AEQ 224
++G+EA+SRG + FVE D ++ + +L G ++ RVE+ L R AE+
Sbjct: 56 ALGLEALSRGAATAVFVESDRRATESLRANVASLRLGG-----TVRHGRVESVLARHAEE 110
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGK----DSFIVVEYPLRTDMLDTCG 280
PFD + PPY E ++A + S + G ++VE +R
Sbjct: 111 ------PFDLVLADPPYGMA--ETVLATVLASLVTGGWLAVGGLVIVERAVRDGAPPWPK 162
Query: 281 CLVKIKDRRFGRTHL 295
L +++ +R+G T L
Sbjct: 163 RLREVRSKRYGDTAL 177
>gi|449094196|ref|YP_007426687.1| hypothetical protein C663_1545 [Bacillus subtilis XF-1]
gi|449028111|gb|AGE63350.1| hypothetical protein C663_1545 [Bacillus subtilis XF-1]
Length = 150
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
GR LDL++G+G +GIEA+SRG FV+ D + V NL+ + ++ E
Sbjct: 9 GRGLDLFAGSGGLGIEALSRGFEHCIFVDRDFKAIQTV-KSNLKTLELTKHAQVYRNDAE 67
Query: 217 TFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276
L A + ++ F + + PPY + L+ I + ++ +D FIV E+ ++
Sbjct: 68 RALHAAAK---RETGFRGIFLDPPYKEQKLKALLTLIDEYQMLEEDGFIVAEHDREVELP 124
Query: 277 DTCGCLVKIKDRRFGRTHLAIY 298
+T G LV + +G T +AIY
Sbjct: 125 ETVGDLVMTRKETYGLTGVAIY 146
>gi|403667721|ref|ZP_10933021.1| methylase yhhF [Kurthia sp. JC8E]
Length = 187
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK + F+IL G LDL++G+G
Sbjct: 1 MRVIAGDRKGMPLKAINGSTTRPTTDKVKESLFNIL------GPFFYGGTVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F+E D N L N+E + + + + L + + +
Sbjct: 55 LGIEALSRGMEKGIFIEKDSKAFQN-LKENIEKCRYEEQTEVFRNDATRAL---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ D + + PPY Y ++ I K+ +V D IV E+ + D K ++
Sbjct: 111 EVQADLIFLDPPYAKHSYYKMVEDIIKNGVVAADGKIVCEHDTTLKLPDQIETFTKYREE 170
Query: 289 RFGRTHLAIY 298
++G T ++ Y
Sbjct: 171 KYGSTIISFY 180
>gi|420163627|ref|ZP_14670370.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|420167465|ref|ZP_14674123.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
gi|394234050|gb|EJD79637.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM095]
gi|394238434|gb|EJD83902.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM087]
Length = 180
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLNLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|322377614|ref|ZP_08052104.1| RNA methyltransferase, RsmD family [Streptococcus sp. M334]
gi|321281379|gb|EFX58389.1| RNA methyltransferase, RsmD family [Streptococcus sp. M334]
Length = 179
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++++ AL +D +V E ++ + CL K++
Sbjct: 108 SGEFDLIFLDPPYAKEQIVADIEKMAERALFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|386040526|ref|YP_005959480.1| 23S rRNA (uracil-5-)-methyltransferase [Paenibacillus polymyxa M1]
gi|343096564|emb|CCC84773.1| 23S rRNA (uracil-5-)-methyltransferase [Paenibacillus polymyxa M1]
Length = 213
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + G RP + VK A F ++ G LDL++G+G
Sbjct: 1 MRVVSGSAKGRPLKAVPGTGTRPTTDKVKEALFSMIGP------YFDGGVALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQF 225
+GIEA+SRG + F++M+ + +V+ NL TG + E F RA +
Sbjct: 55 LGIEALSRGMDKAVFIDMESKSI-DVIKENLRKTGL-------EGKAEVFRNDAGRALKA 106
Query: 226 VGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ K G FD + + PPY + LM ++++ L+ + IV+EY + + G +
Sbjct: 107 LAKRGALFDAVFLDPPYRLKHGDELMRRMAELDLLRSGAIIVLEYESGHEYPISFGPFEQ 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T L+IY
Sbjct: 167 VRKAVYGETALSIY 180
>gi|218682692|ref|ZP_03530293.1| hypothetical protein RetlC8_28133 [Rhizobium etli CIAT 894]
Length = 186
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPDCVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G PFD + PPY
Sbjct: 111 GNLEPFDVLFADPPY 125
>gi|418630667|ref|ZP_13193144.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
gi|374836875|gb|EHS00449.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU128]
Length = 180
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EVQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TSAPFQTIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|224102941|ref|XP_002334108.1| predicted protein [Populus trichocarpa]
gi|222869582|gb|EEF06713.1| predicted protein [Populus trichocarpa]
Length = 62
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 40/65 (61%), Gaps = 18/65 (27%)
Query: 115 KARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174
K RKKL SP MDVRP+MEVV+ GRWLDL SGTGSVGIEAI
Sbjct: 16 KPLRKKLRSPNAMDVRPVMEVVEA------------------GRWLDLLSGTGSVGIEAI 57
Query: 175 SRGCS 179
SRGCS
Sbjct: 58 SRGCS 62
>gi|392971745|ref|ZP_10337138.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
gi|392510284|emb|CCI60426.1| putative site-specific DNA-methyltransferase (adenine specific)
[Staphylococcus equorum subsp. equorum Mu2]
Length = 180
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL+ L++ S T + +RA + + K
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLKS---LNIES-QTEVYKNNADRALKALSK 107
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + +I+K L+ + IV E+
Sbjct: 108 RDIQFDVIFLDPPYEKGLIDEALKEIAKFNLLKESGIIVCEF 149
>gi|113475788|ref|YP_721849.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
gi|110166836|gb|ABG51376.1| putative methyltransferase [Trichodesmium erythraeum IMS101]
Length = 182
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISRG 177
++L + GM++RP + V+ A F+I Q+ GC RWLD+ +G GS+G EA+ RG
Sbjct: 9 RQLKTLPGMEIRPTLAKVREAVFNIWQNNIDGC-------RWLDICAGVGSMGAEALCRG 61
Query: 178 CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237
S + M+ + + LI W S V L+R + VG+ FD +
Sbjct: 62 ASIA--IAMEQYSPACTLIRQ-NWQLVASSSQEFQVLRGDVLKRLKVLVGQK--FDLIYF 116
Query: 238 TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAI 297
PPYT+ Y+ ++ I++ L+G S + VE+ + + + L + + +G T L
Sbjct: 117 DPPYTSNLYQPVLEAIAQYQLLGLTSELAVEHCPKIWPVKSIPNLEICRQKVYGNTALTF 176
Query: 298 Y 298
+
Sbjct: 177 F 177
>gi|284048740|ref|YP_003399079.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
gi|283952961|gb|ADB47764.1| methyltransferase [Acidaminococcus fermentans DSM 20731]
Length = 184
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 10/189 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GKAR KL++PK VRP + VK A F+I+QS P S LD ++GTG+
Sbjct: 1 MRIITGKARGLKLVTPKNYLVRPTADRVKEALFNIIQSR--IPGSTV----LDAFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG +V + + + V + V+ IHT V A+Q GK
Sbjct: 55 LGLEAWSRGAEQVVYFDKSRESLKLVKANVEKARAGEQVNMIHTDAVNGLAMMAQQ--GK 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + PPY ++ + K ++ +V+E+ L D D + +
Sbjct: 113 --TFDLIFSDPPYNKGLNRKVVEALEKWPVLKPGGLLVLEHSLEEDPGDYLPQGTEFRQE 170
Query: 289 RFGRTHLAI 297
++G T +++
Sbjct: 171 KYGDTKISL 179
>gi|456012753|gb|EMF46441.1| putative methyltransferase [Planococcus halocryophilus Or1]
Length = 191
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVVAGSVKGIPLKAVPGNSTRPTTDKVKESIFNMIGP------FFDGGYALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG V F + D V + NLE D + +H ERA + + K
Sbjct: 55 LGIEALSRGIDHVIFTDKDKRAVETIH-ANLEKVRLTDRAEVHRADA----ERAVKAIKK 109
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+G + + PPY LM + + +V KD+ +V E+ ++ D + K
Sbjct: 110 NGVQARLLFLDPPYHMKKSYELMDKAGELGIVTKDAIVVCEHDRDVELPDRTKYFERYKK 169
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 170 ELYGSTIISIY 180
>gi|403046934|ref|ZP_10902403.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
gi|402763630|gb|EJX17723.1| N6-adenine-specific methylase [Staphylococcus sp. OJ82]
Length = 180
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + K L S +G + RP M+ VK F+ L G LDLY+G+GS
Sbjct: 1 MRVISGIHKSKALESIEGRNTRPTMDKVKEGIFNSLHEVSGI--------GLDLYAGSGS 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL+ L++ S T + +RA + + K
Sbjct: 53 LGIEALSRGIDKMIFVDQNFKAVK-VIKANLKS---LNIES-QTEVYKNNADRALKALSK 107
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + +I+K L+ + IV E+
Sbjct: 108 RDIQFDVIFLDPPYEKGLIDEALKEIAKFNLLKESGIIVCEF 149
>gi|237708803|ref|ZP_04539284.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229457229|gb|EEO62950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 186
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+F+ K + FD++ PPY D E + +I +S ++ +D +V+E+
Sbjct: 105 RFIDKCNELFDFIFADPPYALKDLESIPTRIFESGILKEDGLLVLEH 151
>gi|337292454|emb|CCB90476.1| putative rRNA methyltransferase ylbH [Waddlia chondrophila 2032/99]
Length = 193
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 9 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 62
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG FV+ D + + N++ G D + + + +
Sbjct: 63 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA-------RAVIGDVIKLLP 114
Query: 228 KDGPFDYMSVTPPYTAVD------YEVLMAQISKSALVGKDSFIVVE 268
K G FD + V PPY + EVL A I +S L+ + +E
Sbjct: 115 KLGTFDVIYVDPPYFEKNRDFSHSAEVLKA-IDQSDLLAHGGMLFIE 160
>gi|379020830|ref|YP_005297492.1| ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|418563180|ref|ZP_13127622.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|418949710|ref|ZP_13501943.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830139|gb|AEV78117.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus subsp. aureus M013]
gi|371971724|gb|EHO89120.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21262]
gi|375378242|gb|EHS81652.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 180
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLSNLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|365992313|ref|NP_212340.2| putative methyltransferase [Borrelia burgdorferi B31]
gi|387825860|ref|YP_005805313.1| putative methyltransferase [Borrelia burgdorferi JD1]
gi|312148252|gb|ADQ30911.1| putative methyltransferase [Borrelia burgdorferi JD1]
gi|356609311|gb|AAC66597.2| putative methyltransferase [Borrelia burgdorferi B31]
Length = 165
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 25/179 (13%)
Query: 122 LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181
+ PK VRP+M +V+ A F I+ + ++LD+++GTG + +EA+SRG S
Sbjct: 1 MFPKNGSVRPVMSLVREAFFSIIFK------DIVNSKFLDVFAGTGIMSVEALSRGASLA 54
Query: 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG-KDGPFDYMSVTPP 240
H VE + + L+ N + V + + F +RAE F+ KD +D++ + PP
Sbjct: 55 HLVECNRK-IKITLVENFSF-----VEEFY----KFFFQRAEDFLSKKDLFYDFIYLDPP 104
Query: 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299
+ + L+ I K ++ I++ YP D+ +I +F +L YG
Sbjct: 105 FNYKNKINLLEIILKGKILNDKVSIIMHYPSNEDL--------EINTSKFSVYNLKRYG 155
>gi|121602303|ref|YP_989461.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|421761265|ref|ZP_16198068.1| putative methyltransferase [Bartonella bacilliformis INS]
gi|120614480|gb|ABM45081.1| putative methyltransferase [Bartonella bacilliformis KC583]
gi|411173049|gb|EKS43097.1| putative methyltransferase [Bartonella bacilliformis INS]
Length = 185
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L SP+G +RP + + + F+I S G + + R LDL+SGTG+
Sbjct: 1 MRVVSGKFAGRVLFSPRGQSIRPTSDRTRESLFNIFSSREGQFWTGK--RILDLFSGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FVE + +++ N+E G + I L R +G
Sbjct: 59 LGIEALSRGAKAAVFVE-NSIEGRSLIQKNIESFGLQGIGRI--------LRRDATKLGN 109
Query: 229 DG---PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G PFD + PPY E+ ++ K D+ V+E + +++
Sbjct: 110 IGTMLPFDVIFADPPYGYRLGELAFVEVLKGGWAKADALFVLE-EAKEAVVNLPDIFCLD 168
Query: 286 KDRRFGRTHLAIY 298
+R +G T + IY
Sbjct: 169 DERFYGDTAIRIY 181
>gi|297620377|ref|YP_003708514.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
gi|297375678|gb|ADI37508.1| methyltransferase [Waddlia chondrophila WSU 86-1044]
Length = 185
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+LQ++GGK +RKKL SPKG++ RP ++ FDI C + R+LDL+SG+G
Sbjct: 1 MLQIIGGKLKRKKLKSPKGLNTRPTSSRLRETVFDI------CQQEIERARFLDLFSGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+GIEA+SRG FV+ D + + N++ G D + + + +
Sbjct: 55 SMGIEALSRGAGSAVFVDHDRGSI-RCIQENIQELGLADCA-------RAVIGDVIKLLP 106
Query: 228 KDGPFDYMSVTPPYTAVD------YEVLMAQISKSALVGKDSFIVVE 268
K G FD + V PPY + EVL A I +S L+ + +E
Sbjct: 107 KLGTFDVIYVDPPYFEKNRDFSHSAEVLKA-IDQSDLLAHGGMLFIE 152
>gi|82750731|ref|YP_416472.1| methyltransferase [Staphylococcus aureus RF122]
gi|82656262|emb|CAI80676.1| probable methyltransferase [Staphylococcus aureus RF122]
Length = 180
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLETQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|86607262|ref|YP_476025.1| methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86555804|gb|ABD00762.1| putative methyltransferase [Synechococcus sp. JA-3-3Ab]
Length = 183
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTGSVGIEAISR 176
++ L +P G+ RP V+ A F+IL+ GC RWLDL G G+VG EA+
Sbjct: 8 KRALQTPAGLGTRPTPGRVRQALFNILRGQVEGC-------RWLDLCCGAGTVGAEALCH 60
Query: 177 GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236
G + V +E+ I W V + + +G D PFDY+
Sbjct: 61 GAAFVAGIEI---AAPACRIIRANWAKVAQPGQSFQVIQGDARKLLSRGLGLD-PFDYVY 116
Query: 237 VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLA 296
PPY A Y L+ I G ++VE+ ++ D G L++ R +G+T LA
Sbjct: 117 FAPPYEAGLYAPLLPLIPPLLKPGGT--LIVEHRSSHELPDQVGSLLRFDQRAYGQTALA 174
Query: 297 IY 298
Y
Sbjct: 175 FY 176
>gi|386382914|ref|ZP_10068473.1| methyltransferase [Streptomyces tsukubaensis NRRL18488]
gi|385669624|gb|EIF92808.1| methyltransferase [Streptomyces tsukubaensis NRRL18488]
Length = 200
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 17/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +R DLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLGTVEGIRVA---DLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D + V+ N V ++ E RAEQ V
Sbjct: 58 AVGLEALSRGAAHALLVEADA-RAARVIREN--------VRALGLPGAEVRTGRAEQIVA 108
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY VD ++ ++ ++ + +D+ + VE R
Sbjct: 109 GPAPTAPYDAVFLDPPYAVVDDDLREILLTLAAQGWLTEDALVTVERSTRGGTFRWPAGF 168
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 169 EPLRSRRYG 177
>gi|297170258|gb|ADI21295.1| N6-adenine-specific methylase [uncultured gamma proteobacterium
HF0010_09F21]
Length = 184
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G +++ + K +++P E ++ F L+ + LDL++G+GS
Sbjct: 5 LRIISGTLGSRRIKTSKNANLKPTPEKLREKIFSWLK------PDIENSECLDLFAGSGS 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAIS G F+E +P + N L N+ +D S +H R E F+ R K
Sbjct: 59 LGIEAISNGAKSCTFIEQNPSLYKN-LKDNISSLNVVDKSKLHRTRAEDFVRRF-----K 112
Query: 229 DGPFDYMSVTPPYTAVDY-EVLMAQISKSALVGKDSFIVVE 268
+ F+ + PPYT Y + L I + +L G + I VE
Sbjct: 113 EKGFNIIFFDPPYTRDYYGDFLCKVIDRVSLSG--TIIYVE 151
>gi|15639059|ref|NP_218505.1| hypothetical protein TP0065 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025299|ref|YP_001933071.1| hypothetical protein TPASS_0065 [Treponema pallidum subsp. pallidum
SS14]
gi|3322322|gb|AAC65059.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189017874|gb|ACD70492.1| hypothetical protein TPASS_0065 [Treponema pallidum subsp. pallidum
SS14]
Length = 195
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSE 180
L P G +RP M+ ++ + F IL GC +LDL++G+G G+EA SRG
Sbjct: 7 LRCPDG-PIRPAMDRMRESLFAILGDMRGCS-------FLDLFAGSGVCGLEAYSRGAYP 58
Query: 181 VHFVEMDPWVVS--NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238
V FVE W V +VL+ N++ L + VE ++ RA F ++ +
Sbjct: 59 VVFVE---WNVRSFSVLLQNVQVA--LCRLECRCMAVERYIARARTL------FHFVYLD 107
Query: 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
PP+ + L+ ++S+++L + S ++V P + D LV+ R +GR+ + Y
Sbjct: 108 PPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSVVDFY 167
>gi|320108617|ref|YP_004184207.1| methyltransferase [Terriglobus saanensis SP1PR4]
gi|319927138|gb|ADV84213.1| methyltransferase [Terriglobus saanensis SP1PR4]
Length = 201
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 24/199 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG--RWLDLYSGT 166
++V+ G R + L++P G RP + ++ F++L +LR R+ DLY+GT
Sbjct: 4 VRVIAGTYRSRPLVAPPGTATRPTSDRLRETLFNVL--------ALRIAGTRFADLYAGT 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR---VETFLERAE 223
G+VGIEAISRG V F E + ++ + NL+ LD+ S +T+ T L+R
Sbjct: 56 GAVGIEAISRGAEHVFFSETNAKALTAIR-ANLKS---LDLRSGYTLEPAGTATLLKR-- 109
Query: 224 QFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISK---SALVGKDSFIVVEYPLRTDMLDTC 279
V + D + + PPY A +Y ++ + +A + +D ++ E+ + + D
Sbjct: 110 -IVKQGNVLDVVFLDPPYDEAEEYTRTLSTLGSEGFAASLAEDVLVLAEHTRKQPLSDRY 168
Query: 280 GCLVKIKDRRFGRTHLAIY 298
G L + + G L+ Y
Sbjct: 169 GRLARTRTLLQGDAALSFY 187
>gi|429729664|ref|ZP_19264321.1| RNA methyltransferase, RsmD family [Corynebacterium durum F0235]
gi|429149058|gb|EKX92048.1| RNA methyltransferase, RsmD family [Corynebacterium durum F0235]
Length = 196
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 24/206 (11%)
Query: 110 QVLGGKAR-RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR RK + P+G RP + + F LQ G + R LDL++G+G+
Sbjct: 5 RIIAGEARGRKITVPPEG--TRPTSDRAREGLFSSLQVRFGFTGA----RVLDLFAGSGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV VE DP + V+ N+E +V + ++ T+L A +
Sbjct: 59 LGLEAASRGAEEVVLVENDP-AAAEVIRRNIEVVKHPNV-RVEEMKASTYLAHAPREY-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV--- 283
FD + PPY +D V ++ + + + G + +VVE + + D C +
Sbjct: 115 ---FDMVLADPPYELIDESVREMLEALIPTLVDG--AAVVVERNVNSPETDWPECFIPTT 169
Query: 284 -KIKDRRFG--RTHLAIYGPDWAQKK 306
K+K R +G R +A+Y D A ++
Sbjct: 170 QKLKKRTYGIARMDMAVYHADLAGEE 195
>gi|323142410|ref|ZP_08077236.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413103|gb|EFY03996.1| RNA methyltransferase, RsmD family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 198
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + ++++ GKAR +L PK DVRP + VK + F+I+ S + LDL+
Sbjct: 9 TEEQYMRIITGKARGLQLTVPKTYDVRPTADRVKESVFNIIGS------KIIGAEVLDLF 62
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDP----WVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219
+GTG++G+E+ SRG + V F++ V SN++ E + S V
Sbjct: 63 AGTGNLGLESWSRGAAAVTFIDASKESLRLVRSNIVKCRAEADCRVLQGSAPAV------ 116
Query: 220 ERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT- 278
AE+ FD+ PPY E ++A + K + + ++VVE + +
Sbjct: 117 --AERLAAAGELFDFAFCDPPYNKGWIEQIIALLGKKSFLRPGGYLVVERSAHNALPELP 174
Query: 279 CGCLVKIKDRRFGRT 293
GC + ++ R+G T
Sbjct: 175 AGCEL-VRSSRYGET 188
>gi|193212900|ref|YP_001998853.1| methyltransferase [Chlorobaculum parvum NCIB 8327]
gi|193086377|gb|ACF11653.1| methyltransferase [Chlorobaculum parvum NCIB 8327]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+ G+ R +K+ D+RP VK + FD L + LDL++G G+
Sbjct: 1 MQIHAGRYRGRKIRHLPSRDIRPCTSRVKKSLFDTLAAR----IDFEGIDVLDLFAGFGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG V FVE + + + + G + V FL+R E
Sbjct: 57 LGFEALSRGARSVCFVEQNRKAL-DTMKQTAADIGVQSSARFVMADVSAFLKRQE----- 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
GPF+ + PPY DYE+L+ I + L+ D +++E+ D + G L KD
Sbjct: 111 -GPFELVFCDPPYRWEDYELLIRSILDTGLLAADGLLLIEHHASHDFSQSRGYLFH-KD- 167
Query: 289 RFGRTHLAIYGPD 301
+G T ++ + P+
Sbjct: 168 -YGTTRVSFFTPE 179
>gi|49483286|ref|YP_040510.1| methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282903672|ref|ZP_06311560.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|282905441|ref|ZP_06313296.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908413|ref|ZP_06316244.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|283957867|ref|ZP_06375318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295427611|ref|ZP_06820243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591435|ref|ZP_06950073.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|415684403|ref|ZP_11449532.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|418566384|ref|ZP_13130765.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|418581759|ref|ZP_13145839.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418595224|ref|ZP_13158845.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|418602345|ref|ZP_13165751.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|418891675|ref|ZP_13445792.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418897449|ref|ZP_13451522.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900337|ref|ZP_13454395.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908830|ref|ZP_13462835.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|418916914|ref|ZP_13470873.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922701|ref|ZP_13476618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982033|ref|ZP_13529742.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985493|ref|ZP_13533181.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49241415|emb|CAG40099.1| putative methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|282328078|gb|EFB58360.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330733|gb|EFB60247.1| RNA methyltransferase RsmD family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595290|gb|EFC00254.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus C160]
gi|283790016|gb|EFC28833.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295127969|gb|EFG57603.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576321|gb|EFH95037.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|315193792|gb|EFU24187.1| putative methylase [Staphylococcus aureus subsp. aureus CGS00]
gi|371970597|gb|EHO88014.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21264]
gi|374396045|gb|EHQ67296.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21345]
gi|374402091|gb|EHQ73134.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21342]
gi|377704064|gb|EHT28375.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377705296|gb|EHT29603.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377706553|gb|EHT30849.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377711309|gb|EHT35542.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377732632|gb|EHT56683.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377736024|gb|EHT60054.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377750088|gb|EHT74026.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377754826|gb|EHT78732.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG149]
gi|377762228|gb|EHT86097.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGIDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|328957253|ref|YP_004374639.1| hypothetical protein CAR_c09300 [Carnobacterium sp. 17-4]
gi|328673577|gb|AEB29623.1| putative enzyme with adenosyl binding site [Carnobacterium sp.
17-4]
Length = 190
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ +KL + G + RP + VK + F+I+ G LDL++G+G
Sbjct: 1 MRIITGEYGGRKLKAVPGNNTRPTTDKVKESIFNII------GPYFDGGNCLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG ++ D + + N+ T L+ I+ RA +
Sbjct: 55 LAIEAVSRGMDSAVLIDRDSLAIKTIK-ENISVTKELEKFEIY----RNDANRAIDLLRG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + E + +I S L+ ++ I+ E RT++ +T G +
Sbjct: 110 KKKFDLLFLDPPYAKQEIEKQIEKIVDSDLLNDEAIIICELDKRTELNETIGAAKVFRKE 169
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 170 FYGASQIVMY 179
>gi|254515832|ref|ZP_05127892.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR5-3]
gi|219675554|gb|EED31920.1| RNA methyltransferase, RsmD family [gamma proteobacterium NOR5-3]
Length = 185
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++ G+ R +KL +RP + ++ F+ L + R LDL++GTG+
Sbjct: 4 LRIIAGQWRGRKLPVADLPGLRPSADRIRETLFNWLAP------DIVGARCLDLFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE +++L L + IH FL R GK
Sbjct: 58 LGLEALSRGAAHCQFVEHQ-GPAADLLRQALITLNAGSLGEIHLEDAGKFLAR-----GK 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
PFD + + PP+ + + + Q++ S L+ ++ I +EY
Sbjct: 112 QDPFDLVFLDPPFASNLLDAALTQLTDSPLLSPNALIYLEY 152
>gi|15924114|ref|NP_371648.1| methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926708|ref|NP_374241.1| hypothetical protein SA0972 [Staphylococcus aureus subsp. aureus
N315]
gi|21282735|ref|NP_645823.1| hypothetical protein MW1006 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485961|ref|YP_043182.1| methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651733|ref|YP_185997.1| hypothetical protein SACOL1133 [Staphylococcus aureus subsp. aureus
COL]
gi|87161982|ref|YP_493721.1| hypothetical protein SAUSA300_1023 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267616|ref|YP_001246559.1| methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150393671|ref|YP_001316346.1| methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|151221199|ref|YP_001332021.1| hypothetical protein NWMN_0987 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979446|ref|YP_001441705.1| hypothetical protein SAHV_1115 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509300|ref|YP_001574959.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140477|ref|ZP_03564970.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253316754|ref|ZP_04839967.1| hypothetical protein SauraC_11535 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731734|ref|ZP_04865899.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733642|ref|ZP_04867807.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|255005910|ref|ZP_05144511.2| hypothetical protein SauraM_05555 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425175|ref|ZP_05601601.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427838|ref|ZP_05604236.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430473|ref|ZP_05606855.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433175|ref|ZP_05609533.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257436074|ref|ZP_05612121.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257795146|ref|ZP_05644125.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|258407146|ref|ZP_05680295.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258421763|ref|ZP_05684684.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|258436128|ref|ZP_05689111.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|258443383|ref|ZP_05691726.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258444994|ref|ZP_05693311.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|258449831|ref|ZP_05697929.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|258451930|ref|ZP_05699946.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|258454930|ref|ZP_05702893.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|262048708|ref|ZP_06021590.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262052219|ref|ZP_06024425.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|269202736|ref|YP_003282005.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894151|ref|ZP_06302382.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282910699|ref|ZP_06318502.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913899|ref|ZP_06321686.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282916373|ref|ZP_06324135.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282918822|ref|ZP_06326557.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923944|ref|ZP_06331620.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282925308|ref|ZP_06332965.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928646|ref|ZP_06336243.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|283770184|ref|ZP_06343076.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|284024049|ref|ZP_06378447.1| hypothetical protein Saura13_05639 [Staphylococcus aureus subsp.
aureus 132]
gi|293500934|ref|ZP_06666785.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509891|ref|ZP_06668600.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526478|ref|ZP_06671163.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|294848114|ref|ZP_06788861.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405928|ref|ZP_06815737.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296276074|ref|ZP_06858581.1| hypothetical protein SauraMR_06982 [Staphylococcus aureus subsp.
aureus MR1]
gi|297208239|ref|ZP_06924669.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246398|ref|ZP_06930242.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912316|ref|ZP_07129759.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381319|ref|ZP_07363972.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014316|ref|YP_005290552.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861718|ref|YP_005744438.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384864350|ref|YP_005749709.1| methyltransferase small domain-containing protein [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384867995|ref|YP_005748191.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869656|ref|YP_005752370.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|385781351|ref|YP_005757522.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386830659|ref|YP_006237313.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387142735|ref|YP_005731128.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|387150265|ref|YP_005741829.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|387780236|ref|YP_005755034.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|415689697|ref|ZP_11452925.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|415691918|ref|ZP_11453984.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|417648533|ref|ZP_12298357.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|417652161|ref|ZP_12301914.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|417655561|ref|ZP_12305271.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|417796256|ref|ZP_12443471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799032|ref|ZP_12446184.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|417802004|ref|ZP_12449081.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|417889062|ref|ZP_12533161.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|417899708|ref|ZP_12543610.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|417901357|ref|ZP_12545233.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|418276771|ref|ZP_12891608.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|418312598|ref|ZP_12924107.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|418316553|ref|ZP_12927990.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|418317952|ref|ZP_12929367.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321883|ref|ZP_12933222.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424261|ref|ZP_12997386.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427188|ref|ZP_13000203.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430099|ref|ZP_13003016.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433058|ref|ZP_13005840.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436722|ref|ZP_13008527.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439600|ref|ZP_13011310.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442645|ref|ZP_13014249.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445710|ref|ZP_13017190.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448660|ref|ZP_13020054.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451466|ref|ZP_13022802.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454541|ref|ZP_13025804.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457415|ref|ZP_13028620.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568100|ref|ZP_13132454.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|418571236|ref|ZP_13135475.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|418574623|ref|ZP_13138790.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|418578954|ref|ZP_13143049.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418598423|ref|ZP_13161933.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|418639765|ref|ZP_13202006.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418642550|ref|ZP_13204736.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418644638|ref|ZP_13206778.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647725|ref|ZP_13209788.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649274|ref|ZP_13211302.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418653110|ref|ZP_13215056.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655581|ref|ZP_13217432.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418657836|ref|ZP_13219590.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418662014|ref|ZP_13223572.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872061|ref|ZP_13426417.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875057|ref|ZP_13429319.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418877962|ref|ZP_13432198.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880798|ref|ZP_13435017.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883725|ref|ZP_13437922.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886383|ref|ZP_13440532.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418894575|ref|ZP_13448673.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418903333|ref|ZP_13457374.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906060|ref|ZP_13460087.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911730|ref|ZP_13465713.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914219|ref|ZP_13468191.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418919970|ref|ZP_13473910.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418928380|ref|ZP_13482266.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931108|ref|ZP_13484955.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418933958|ref|ZP_13487782.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418948384|ref|ZP_13500688.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418954495|ref|ZP_13506455.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418987945|ref|ZP_13535618.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418990984|ref|ZP_13538645.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419775204|ref|ZP_14301146.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784856|ref|ZP_14310617.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|421150722|ref|ZP_15610376.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422743487|ref|ZP_16797471.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745646|ref|ZP_16799585.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424777716|ref|ZP_18204675.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|424784950|ref|ZP_18211753.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|440705889|ref|ZP_20886641.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734571|ref|ZP_20914183.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443635748|ref|ZP_21119870.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|443640448|ref|ZP_21124437.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|448742009|ref|ZP_21723964.1| methyltransferase [Staphylococcus aureus KT/314250]
gi|13700924|dbj|BAB42220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246894|dbj|BAB57286.1| similar to methyltransferase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204173|dbj|BAB94871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244404|emb|CAG42832.1| putative methylase [Staphylococcus aureus subsp. aureus MSSA476]
gi|57285919|gb|AAW38013.1| conserved hypothetical protein TIGR00095 [Staphylococcus aureus
subsp. aureus COL]
gi|87127956|gb|ABD22470.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|147740685|gb|ABQ48983.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946123|gb|ABR52059.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
JH1]
gi|150373999|dbj|BAF67259.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721581|dbj|BAF77998.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368109|gb|ABX29080.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724548|gb|EES93277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728342|gb|EES97071.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus TCH130]
gi|257272151|gb|EEV04283.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274679|gb|EEV06166.1| methyltransferase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278601|gb|EEV09220.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281268|gb|EEV11405.1| methyltransferase [Staphylococcus aureus subsp. aureus E1410]
gi|257284356|gb|EEV14476.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M876]
gi|257789118|gb|EEV27458.1| RNA methyltransferase [Staphylococcus aureus A9781]
gi|257841301|gb|EEV65746.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257842096|gb|EEV66524.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9719]
gi|257848817|gb|EEV72802.1| site-specific DNA-methyltransferase [Staphylococcus aureus A9299]
gi|257851473|gb|EEV75412.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257856116|gb|EEV79034.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6300]
gi|257856751|gb|EEV79654.1| RsmD family RNA methyltransferase [Staphylococcus aureus A6224]
gi|257860145|gb|EEV82977.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5948]
gi|257862810|gb|EEV85575.1| RsmD family RNA methyltransferase [Staphylococcus aureus A5937]
gi|259159890|gb|EEW44928.1| hypothetical protein SA930_0910 [Staphylococcus aureus 930918-3]
gi|259163164|gb|EEW47724.1| hypothetical protein SAD30_1538 [Staphylococcus aureus D30]
gi|262075026|gb|ACY10999.1| hypothetical protein SAAV_1090 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940618|emb|CBI48997.1| putative methylase [Staphylococcus aureus subsp. aureus TW20]
gi|282313916|gb|EFB44308.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316632|gb|EFB47006.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282319813|gb|EFB50161.1| RNA methyltransferase, RsmD family protein [Staphylococcus aureus
subsp. aureus D139]
gi|282321967|gb|EFB52291.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M899]
gi|282325304|gb|EFB55613.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282589685|gb|EFB94771.1| RsmD family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282592584|gb|EFB97594.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763637|gb|EFC03766.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8117]
gi|283460331|gb|EFC07421.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|285816804|gb|ADC37291.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus 04-02981]
gi|290920550|gb|EFD97613.1| putative methyltransferase [Staphylococcus aureus subsp. aureus
M1015]
gi|291095939|gb|EFE26200.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467341|gb|EFF09858.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|294824914|gb|EFG41336.1| RsmD family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969363|gb|EFG45383.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886978|gb|EFH25881.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176764|gb|EFH36024.1| RsmD family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886562|gb|EFK81764.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750947|gb|ADL65124.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340302|gb|EFM06243.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438500|gb|ADQ77571.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829517|emb|CBX34359.1| methyltransferase small domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130290|gb|EFT86277.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS03]
gi|315196153|gb|EFU26510.1| site-specific DNA-methyltransferase (adenine-specific)
[Staphylococcus aureus subsp. aureus CGS01]
gi|320141061|gb|EFW32908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143118|gb|EFW34908.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313791|gb|AEB88204.1| Site-specific DNA-methyltransferase (Adenine-specific)
[Staphylococcus aureus subsp. aureus T0131]
gi|329725181|gb|EGG61670.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728779|gb|EGG65200.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730801|gb|EGG67180.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21189]
gi|334269755|gb|EGL88168.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21305]
gi|334274924|gb|EGL93230.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21310]
gi|334275767|gb|EGL94046.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21318]
gi|341844636|gb|EGS85848.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21259]
gi|341845196|gb|EGS86398.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21266]
gi|341853130|gb|EGS94012.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21195]
gi|344177338|emb|CCC87804.1| putative methylase [Staphylococcus aureus subsp. aureus LGA251]
gi|364522340|gb|AEW65090.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365174049|gb|EHM64449.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21178]
gi|365224498|gb|EHM65763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365238243|gb|EHM79080.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21334]
gi|365240832|gb|EHM81591.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21340]
gi|365244644|gb|EHM85301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978754|gb|EHO95995.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21333]
gi|371980782|gb|EHO97983.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21272]
gi|371980940|gb|EHO98137.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363013|gb|AEZ37118.1| hypothetical protein SAVC_04780 [Staphylococcus aureus subsp.
aureus VC40]
gi|374399780|gb|EHQ70916.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21343]
gi|375015663|gb|EHS09307.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375016777|gb|EHS10412.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375019822|gb|EHS13373.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375025041|gb|EHS18451.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375029435|gb|EHS22763.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029647|gb|EHS22972.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375036332|gb|EHS29407.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375037297|gb|EHS30339.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375039945|gb|EHS32857.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375367570|gb|EHS71521.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375372383|gb|EHS76125.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-157]
gi|375372725|gb|EHS76450.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-189]
gi|377695576|gb|EHT19937.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695928|gb|EHT20285.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377696981|gb|EHT21336.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377715459|gb|EHT39649.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377715945|gb|EHT40131.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377719733|gb|EHT43903.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723106|gb|EHT47231.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725108|gb|EHT49223.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG547]
gi|377726565|gb|EHT50676.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731691|gb|EHT55744.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377738292|gb|EHT62301.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742348|gb|EHT66333.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377757721|gb|EHT81609.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377765360|gb|EHT89210.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377766969|gb|EHT90793.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377771102|gb|EHT94860.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377771738|gb|EHT95492.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363700|gb|EID41028.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970888|gb|EID86978.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CO-23]
gi|385196051|emb|CCG15668.1| putative methylase [Staphylococcus aureus subsp. aureus HO 5096
0412]
gi|387719164|gb|EIK07116.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387719603|gb|EIK07545.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS2]
gi|387720848|gb|EIK08747.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS1]
gi|387725924|gb|EIK13515.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS4]
gi|387728571|gb|EIK16058.1| hypothetical protein MQI_00943 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731087|gb|EIK18427.1| hypothetical protein MQK_00455 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387736696|gb|EIK23785.1| hypothetical protein MQO_00736 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387738237|gb|EIK25290.1| RsmD family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS7]
gi|387738336|gb|EIK25380.1| hypothetical protein MQQ_01696 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387745438|gb|EIK32193.1| hypothetical protein MQS_02465 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387746002|gb|EIK32747.1| hypothetical protein MQU_01845 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747973|gb|EIK34672.1| hypothetical protein MQW_01876 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394329210|gb|EJE55325.1| methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402346396|gb|EJU81486.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423347|emb|CCJ10758.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408425337|emb|CCJ12724.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408427325|emb|CCJ14688.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408429312|emb|CCJ26477.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408431300|emb|CCJ18615.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408433294|emb|CCJ20579.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408435285|emb|CCJ22545.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|408437270|emb|CCJ24513.1| Similar to methyltransferase [Staphylococcus aureus subsp. aureus
ST228]
gi|421956360|gb|EKU08689.1| Ribosomal RNA small subunit methyltransferase D [Staphylococcus
aureus CN79]
gi|436431599|gb|ELP28952.1| hypothetical protein SASA_05810 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436507655|gb|ELP43324.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21282]
gi|443405129|gb|ELS63739.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21196]
gi|443408807|gb|ELS67318.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21236]
gi|445547228|gb|ELY15499.1| methyltransferase [Staphylococcus aureus KT/314250]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|423070854|ref|ZP_17059630.1| RsmD family RNA methyltransferase [Streptococcus intermedius F0413]
gi|355364948|gb|EHG12675.1| RsmD family RNA methyltransferase [Streptococcus intermedius F0413]
Length = 179
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLAGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEAISRG + VE D + ++ NL+ T + + + LER
Sbjct: 55 LAIEAISRGMTTAILVEKDRRAQA-IINQNLKMTREEERFELLKMEANQSLERI------ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++++ L+ D+ IV E D+ + L K +
Sbjct: 108 TGHFDLVLLDPPYAKEQIVTDIEKMAERELLSNDALIVCETDKSVDLPEEIAGLGIWKQK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|423242277|ref|ZP_17223386.1| RsmD family RNA methyltransferase [Bacteroides dorei CL03T12C01]
gi|392639563|gb|EIY33379.1| RsmD family RNA methyltransferase [Bacteroides dorei CL03T12C01]
Length = 186
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A +DL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------MDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+F+ K + FD++ PPY D E + +I +S ++ +D +V+E+
Sbjct: 105 RFIDKCNEQFDFIFADPPYALKDLESIPTRIFESGILKEDGLLVLEH 151
>gi|110598419|ref|ZP_01386691.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
gi|110339953|gb|EAT58456.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length = 181
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 11/161 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q+L G + +K+ S +RP VK + FD L + LDL++G GS
Sbjct: 1 MQILAGTYKGRKIRSSSTNAIRPCSSRVKKSLFDTLAAR----LDFDNITVLDLFAGFGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SRG + V FV+ + + L+ G + I V FL R +
Sbjct: 57 LGFEALSRGAASVCFVDQHVDALKAIKATALQL-GVEERVKIVNADVSAFLSRPSK---- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
PFD + PPY+ DY L+ +I+ AL+ + +++E+
Sbjct: 112 --PFDLVFCDPPYSWPDYGQLIEKIAGGALLADEGILLIEH 150
>gi|381164814|ref|ZP_09874044.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
gi|379256719|gb|EHY90645.1| RNA methyltransferase, RsmD family [Saccharomonospora azurea
NA-128]
Length = 185
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A + L + PKG RP E+V+ A F L++A L R LDLYSG+
Sbjct: 1 MTRIVAGLAGGRTLRVPPKG--TRPTTELVREALFSALEAAD----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D +++L N+ G V + RVE+ +
Sbjct: 55 GALGLEALSRGAKEAVFVEAD-RTAADILRGNIANVGLGGV--VRQGRVESVVAEP---- 107
Query: 227 GKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVE 268
PFD + PPY AVD E V++ ++ + + ++ +VVE
Sbjct: 108 -GGTPFDLVFADPPY-AVDAETLGVVLTRLVDNGWLADNALVVVE 150
>gi|312135042|ref|YP_004002380.1| methyltransferase [Caldicellulosiruptor owensensis OL]
gi|311775093|gb|ADQ04580.1| methyltransferase [Caldicellulosiruptor owensensis OL]
Length = 184
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGAKEVVFVEKDVRCI-NLIKENLKNLDLLKRARIIKADVIRFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE + D L +++
Sbjct: 109 NCPVFDIIFLDPPYKSGYAKECISKIIENNRINENGLIIVESNVEFRYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|383828552|ref|ZP_09983641.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
gi|383461205|gb|EID53295.1| RNA methyltransferase, RsmD family [Saccharomonospora xinjiangensis
XJ-54]
Length = 185
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G+A + L + PKG RP E+V+ A F+ L++AG L R LDLYSG+
Sbjct: 1 MTRIVAGRAGGRVLRVPPKG--TRPTTELVREALFNALEAAG----ELDGVRVLDLYSGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG E FVE D + +L N+ G V + R ET + +
Sbjct: 55 GALGLEALSRGAREAVFVEAD-RTAAEILRRNIATVGLGGV--VRQGRAETVV---AEPA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIVVE 268
G+ PF+ + PPY AVD + V++ ++ + + + +VVE
Sbjct: 109 GE--PFELVLADPPY-AVDADTLGVVLGRLVDNGWLAPGALVVVE 150
>gi|294815345|ref|ZP_06773988.1| Putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|326443699|ref|ZP_08218433.1| putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
gi|294327944|gb|EFG09587.1| Putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
Length = 200
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F ++ G LR DLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSSWEALLGGLEGLRIA---DLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D V +V S+ E RAEQ V
Sbjct: 58 AVGLEALSRGAAHALLVEADARAARTVR---------ENVRSLGLPGAEVRTGRAEQIVS 108
Query: 228 KDG---PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + +D+ VE R D
Sbjct: 109 GPAPADPYDVVFLDPPYAVTDDDLREILLTLRSGGWIARDAVATVERSTRGGTFDWPAGF 168
Query: 283 VKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 169 EPLRARRYGEGTL 181
>gi|261367521|ref|ZP_05980404.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
gi|282570303|gb|EFB75838.1| RNA methyltransferase, RsmD family [Subdoligranulum variabile DSM
15176]
Length = 182
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGT 166
++V+ G AR K L + G DV RP + VK A F +Q L PG R LDL++G+
Sbjct: 1 MRVIAGTARGKNLQALPGEDVTRPTINRVKEAMFSSVQF-------LVPGARVLDLFAGS 53
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G +GIEA+SRG FV+ P + ++ N + G S I FL
Sbjct: 54 GQLGIEALSRGAKSCVFVDRSPEAL-GIVTANCKAAGVERQSDIRHGEALAFLANIR--- 109
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQI--SKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
GPFD + + PP+ ++ L+ Q+ + + I+ E ++ + G LV+
Sbjct: 110 ---GPFDLVLLDPPF----HQGLIGQVLPALQEKLAPGGVILAESEREAELPEWVGTLVR 162
Query: 285 IKDRRFGRTHLAIY 298
K +G+ ++ Y
Sbjct: 163 TKQYFYGKIMVSRY 176
>gi|300811326|ref|ZP_07091823.1| RNA methyltransferase, RsmD family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497690|gb|EFK32715.1| RNA methyltransferase, RsmD family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 183
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSQKTRPTSDKVKESLFNSLGQFFAG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
++GIEA+SRGC H V D ++ N++ T D + T+ + L + F
Sbjct: 54 ALGIEAVSRGCE--HAVLNDVSRQACQIIRKNVDLTKEPDRFEVFTMPAKVAL---KVFA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
++ FD + + PPY M ++ L+ + IVVE +TD+ G + +K
Sbjct: 109 DQERKFDLVFLDPPYAKQQMVKDMTALASLDLLKPGAKIVVETDEQTDLPPVAGFDL-LK 167
Query: 287 DRRFGRTHLAIY 298
D G+T + IY
Sbjct: 168 DHHMGKTIVRIY 179
>gi|114800273|ref|YP_761457.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114740447|gb|ABI78572.1| putative methyltransferase [Hyphomonas neptunium ATCC 15444]
Length = 186
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + + L +PKGM RP + + + F+IL A P L R +DL++G+G+
Sbjct: 1 MRIIAGQHKGRSLTAPKGMTTRPTSDRTRESLFNILAHAPWAP-PLEGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + N+E G + +H R T L E+ G
Sbjct: 60 LGLEAMSRGAAFCLFVETDH-GARGAIRDNIEALGLFGHTRLHR-RSATDL--GEKPAGV 115
Query: 229 DGPFDYMSVTPPY 241
PF + PPY
Sbjct: 116 GAPFTLAFLDPPY 128
>gi|416124445|ref|ZP_11595441.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|418329247|ref|ZP_12940326.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418613845|ref|ZP_13176843.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|418634577|ref|ZP_13196970.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|420175083|ref|ZP_14681528.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|420189676|ref|ZP_14695644.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|420192826|ref|ZP_14698683.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|420204071|ref|ZP_14709631.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
gi|319401555|gb|EFV89765.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
gi|365230909|gb|EHM71984.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374822511|gb|EHR86532.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU118]
gi|374836800|gb|EHS00377.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU129]
gi|394244369|gb|EJD89714.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM061]
gi|394260642|gb|EJE05451.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM023]
gi|394261011|gb|EJE05813.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM037]
gi|394274085|gb|EJE18510.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM015]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EVQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|149007444|ref|ZP_01831087.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|410477308|ref|YP_006744067.1| RsmD family RNA methyltransferase [Streptococcus pneumoniae
gamPNI0373]
gi|417677675|ref|ZP_12327080.1| methylase, putative [Streptococcus pneumoniae GA17545]
gi|418097102|ref|ZP_12734209.1| methyltransferase [Streptococcus pneumoniae GA16531]
gi|418113305|ref|ZP_12750303.1| methyltransferase [Streptococcus pneumoniae GA41538]
gi|418155931|ref|ZP_12792656.1| methylase, putative [Streptococcus pneumoniae GA16242]
gi|418163003|ref|ZP_12799683.1| methylase, putative [Streptococcus pneumoniae GA17328]
gi|418226329|ref|ZP_12852955.1| methyltransferase [Streptococcus pneumoniae NP112]
gi|419467629|ref|ZP_14007509.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05248]
gi|419513352|ref|ZP_14052984.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05578]
gi|419517557|ref|ZP_14057171.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02506]
gi|419526691|ref|ZP_14066246.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14373]
gi|421207452|ref|ZP_15664500.1| hypothetical protein AMCSP20_002030 [Streptococcus pneumoniae
2090008]
gi|421230574|ref|ZP_15687235.1| hypothetical protein AMCSP01_001968 [Streptococcus pneumoniae
2061376]
gi|421284103|ref|ZP_15734887.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04216]
gi|421292842|ref|ZP_15743574.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA56348]
gi|421312719|ref|ZP_15763319.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58981]
gi|444387514|ref|ZP_21185534.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS125219]
gi|444390942|ref|ZP_21188855.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS70012]
gi|444393230|ref|ZP_21190886.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS81218]
gi|444395766|ref|ZP_21193307.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0002]
gi|444398673|ref|ZP_21196153.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0006]
gi|444399524|ref|ZP_21196986.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0007]
gi|444401764|ref|ZP_21198945.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0008]
gi|444404207|ref|ZP_21201167.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0009]
gi|444406723|ref|ZP_21203393.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0010]
gi|444414957|ref|ZP_21211205.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0199]
gi|444417738|ref|ZP_21213756.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0360]
gi|444420754|ref|ZP_21216522.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0427]
gi|147761016|gb|EDK67985.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|332071948|gb|EGI82436.1| methylase, putative [Streptococcus pneumoniae GA17545]
gi|353767228|gb|EHD47764.1| methyltransferase [Streptococcus pneumoniae GA16531]
gi|353782236|gb|EHD62672.1| methyltransferase [Streptococcus pneumoniae GA41538]
gi|353819637|gb|EHD99829.1| methylase, putative [Streptococcus pneumoniae GA16242]
gi|353826281|gb|EHE06440.1| methylase, putative [Streptococcus pneumoniae GA17328]
gi|353879895|gb|EHE59716.1| methyltransferase [Streptococcus pneumoniae NP112]
gi|379542542|gb|EHZ07698.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05248]
gi|379556180|gb|EHZ21236.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA14373]
gi|379634517|gb|EHZ99082.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05578]
gi|379637849|gb|EIA02399.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02506]
gi|395573024|gb|EJG33616.1| hypothetical protein AMCSP20_002030 [Streptococcus pneumoniae
2090008]
gi|395593078|gb|EJG53331.1| hypothetical protein AMCSP01_001968 [Streptococcus pneumoniae
2061376]
gi|395879894|gb|EJG90950.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04216]
gi|395891403|gb|EJH02401.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA56348]
gi|395908348|gb|EJH19229.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58981]
gi|406370253|gb|AFS43943.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
gamPNI0373]
gi|444252727|gb|ELU59188.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS125219]
gi|444255100|gb|ELU61456.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS70012]
gi|444257407|gb|ELU63744.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0002]
gi|444258750|gb|ELU65071.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0006]
gi|444261497|gb|ELU67799.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS81218]
gi|444267639|gb|ELU73534.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0008]
gi|444268583|gb|ELU74429.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0007]
gi|444272070|gb|ELU77808.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0010]
gi|444277280|gb|ELU82794.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0009]
gi|444280882|gb|ELU86229.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0199]
gi|444282979|gb|ELU88200.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0360]
gi|444283920|gb|ELU89091.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0427]
Length = 179
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T ++ ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQITK--EIGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPYT E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYTK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|403383434|ref|ZP_10925491.1| methylase yhhF [Kurthia sp. JC30]
Length = 187
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L + G RP + VK + F+IL G LDL++G+G
Sbjct: 1 MRVIAGERKGMPLKAINGNTTRPTTDKVKESMFNIL------GPFFNGGTVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F+E D N L N+ + DV+ + L + + +
Sbjct: 55 LGIEALSRGMDHAIFIEKDGKAYVN-LKENIVKCRYEDVAETYRNDATRAL---KALIKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ + + + PPY Y ++ I + +V KD IV E+ + + + K ++
Sbjct: 111 EVQANLIFLDPPYAKHSYYKMVEDIIVNNVVAKDGIIVCEHDNQLKLPEQMATFTKYREE 170
Query: 289 RFGRTHLAIY 298
++G T ++ Y
Sbjct: 171 KYGSTIMSFY 180
>gi|212693643|ref|ZP_03301771.1| hypothetical protein BACDOR_03162 [Bacteroides dorei DSM 17855]
gi|423228889|ref|ZP_17215295.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T00C15]
gi|423247701|ref|ZP_17228749.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T12C06]
gi|212663896|gb|EEB24470.1| putative RNA methyltransferase, RsmD family [Bacteroides dorei DSM
17855]
gi|392631594|gb|EIY25565.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T12C06]
gi|392635628|gb|EIY29527.1| RsmD family RNA methyltransferase [Bacteroides dorei CL02T00C15]
Length = 186
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-----AGGCPASLRPGRWLDLY 163
++V+ G +R++ P RP + K F++L + G A LDL+
Sbjct: 1 MRVISGIYKRRRFDVPHTFKARPTTDFAKENLFNVLSNNYFDFENGVTA-------LDLF 53
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
+GTGS+ IE +SRGC V VE DP +S + E + +R + F
Sbjct: 54 AGTGSISIELVSRGCDRVISVEKDPQHLSFISQVMRE----VKTDKCFPIRADVF----- 104
Query: 224 QFVGK-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+F+ K FD++ PPY D E + +I +S ++ +D +V+E+
Sbjct: 105 RFIDKCSEQFDFIFADPPYALKDLESIPTRIFESGILKEDGLLVLEH 151
>gi|315640769|ref|ZP_07895871.1| methyltransferase [Enterococcus italicus DSM 15952]
gi|315483524|gb|EFU74018.1| methyltransferase [Enterococcus italicus DSM 15952]
Length = 187
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G +KL S G + RP + VKGA +++L G+ LDL+SG+G
Sbjct: 1 MRIIAGTYGGRKLKSLPGTNTRPTTDKVKGAIYNML------GPYFDGGKVLDLFSGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEAISRG + V+ + +S ++ N++ T + + + L++ G+
Sbjct: 55 LAIEAISRGMDKAVCVDKNYQAIS-IIKENIQITKEPEKFVVLKMDANAALKK---LSGE 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + PPY + + Q+S+ L + + IV E D+ + I+ +
Sbjct: 111 EMKFDLILFDPPYAKQEIVDQIEQMSQLNLTAEYAKIVCETDKAIDLPEKIAGFSAIRQQ 170
Query: 289 RFGRTHLAIYGPDWAQK 305
+G + + IY D A++
Sbjct: 171 TYGASKVTIYRKDEAER 187
>gi|417660078|ref|ZP_12309669.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|417909883|ref|ZP_12553616.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|420222061|ref|ZP_14726986.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|420224923|ref|ZP_14729761.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|420229260|ref|ZP_14733966.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
gi|329734402|gb|EGG70715.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU045]
gi|341652492|gb|EGS76280.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU037]
gi|394290092|gb|EJE33962.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH08001]
gi|394294326|gb|EJE38012.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH06004]
gi|394299026|gb|EJE42577.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04003]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNKEI--TIAPFQMIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|295836312|ref|ZP_06823245.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
gi|295825954|gb|EFG64569.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
Length = 195
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP E + F ++ G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSERAREGLFSTWEALLGGP--LDGERVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D V + +V + E +A Q V
Sbjct: 59 AVGLEALSRGAAHALLVESDARAVRTIRA---------NVRDLGLPGAEVRQGKAAQIVA 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ P+D + + PPY D E+ ++ + A + +++ + VE R
Sbjct: 110 GPPPEAPYDLVFLDPPYAVPDAELGEILITLRTRAWLAEEALVTVERGTRGGEFGWPDGF 169
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 170 GALRSRRYG 178
>gi|27467741|ref|NP_764378.1| hypothetical protein SE0823 [Staphylococcus epidermidis ATCC 12228]
gi|57866626|ref|YP_188297.1| hypothetical protein SERP0714 [Staphylococcus epidermidis RP62A]
gi|282876424|ref|ZP_06285291.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|417645470|ref|ZP_12295372.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|417656585|ref|ZP_12306268.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|417913823|ref|ZP_12557485.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|418325024|ref|ZP_12936234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|418411568|ref|ZP_12984836.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
gi|418603430|ref|ZP_13166815.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|418606302|ref|ZP_13169588.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|418609819|ref|ZP_13172953.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|418612993|ref|ZP_13176014.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|418616729|ref|ZP_13179653.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|418624902|ref|ZP_13187562.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|418626718|ref|ZP_13189314.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|418628993|ref|ZP_13191509.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|418663777|ref|ZP_13225285.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|419768668|ref|ZP_14294784.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772624|ref|ZP_14298655.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420164705|ref|ZP_14671422.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|420169693|ref|ZP_14676272.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|420172850|ref|ZP_14679348.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|420177458|ref|ZP_14683794.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|420180241|ref|ZP_14686496.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|420182818|ref|ZP_14688951.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|420185192|ref|ZP_14691288.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|420194452|ref|ZP_14700263.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|420198594|ref|ZP_14704298.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|420198936|ref|ZP_14704620.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|420201346|ref|ZP_14706968.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|420206532|ref|ZP_14712042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|420210663|ref|ZP_14716083.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|420214371|ref|ZP_14719650.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|420217151|ref|ZP_14722335.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|420218650|ref|ZP_14723709.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|420226940|ref|ZP_14731713.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|420231624|ref|ZP_14736269.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|420234306|ref|ZP_14738871.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|421607351|ref|ZP_16048597.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|27315285|gb|AAO04420.1|AE016746_210 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637284|gb|AAW54072.1| conserved hypothetical protein TIGR00095 [Staphylococcus
epidermidis RP62A]
gi|281295449|gb|EFA87976.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
SK135]
gi|329732693|gb|EGG69042.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU144]
gi|329736246|gb|EGG72518.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU028]
gi|341654518|gb|EGS78262.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU109]
gi|365228930|gb|EHM70102.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU071]
gi|374406155|gb|EHQ77058.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU065]
gi|374407599|gb|EHQ78452.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU041]
gi|374408551|gb|EHQ79367.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU057]
gi|374411196|gb|EHQ81914.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU081]
gi|374817303|gb|EHR81488.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU117]
gi|374820807|gb|EHR84883.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU120]
gi|374826167|gb|EHR90075.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU125]
gi|374831262|gb|EHR95004.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU126]
gi|374834987|gb|EHR98618.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU127]
gi|383359251|gb|EID36681.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359494|gb|EID36917.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394237133|gb|EJD82627.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM088]
gi|394241527|gb|EJD86941.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM067]
gi|394243300|gb|EJD88671.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM070]
gi|394247842|gb|EJD93084.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM057]
gi|394249281|gb|EJD94494.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM049]
gi|394251280|gb|EJD96379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM053]
gi|394255226|gb|EJE00183.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM040]
gi|394264037|gb|EJE08745.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM020]
gi|394264554|gb|EJE09234.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM021]
gi|394272622|gb|EJE17072.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM031]
gi|394272951|gb|EJE17395.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM018]
gi|394275943|gb|EJE20308.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM003]
gi|394278371|gb|EJE22688.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM008]
gi|394283736|gb|EJE27901.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05005]
gi|394290507|gb|EJE34362.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05001]
gi|394292146|gb|EJE35916.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH04008]
gi|394297441|gb|EJE41038.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH05003]
gi|394302166|gb|EJE45614.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051668]
gi|394304360|gb|EJE47765.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIH051475]
gi|406657143|gb|EKC83536.1| hypothetical protein B440_03338 [Staphylococcus epidermidis
AU12-03]
gi|410893112|gb|EKS40903.1| RsmD family RNA methyltransferase [Staphylococcus epidermidis
BVS058A4]
Length = 180
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|411004911|ref|ZP_11381240.1| RNA methylase [Streptomyces globisporus C-1027]
Length = 194
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F Q+ G +L R DLY+G+G
Sbjct: 1 MTRVIAGSAGGRRLAVPPGTGTRPTSDRAREGLFSTWQALLG---TLEGTRVADLYAGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV- 226
+VG+EA+SRG VE DP V V +V ++ + +AEQ V
Sbjct: 58 AVGLEALSRGAVHALLVEADPKAVRTVRD---------NVRTLGLPGADVRTGKAEQIVT 108
Query: 227 --GKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P+D + + PPY D E+L+ ++ L G D+ + VE R
Sbjct: 109 GPAPADPYDIVFLDPPYAVTDDDLREILLTLRAQGWLAG-DALVTVERSTRGGEFGWPAG 167
Query: 282 LVKIKDRRFGRTHL 295
++ RR+G L
Sbjct: 168 FEPLRSRRYGEGTL 181
>gi|78184295|ref|YP_376730.1| hypothetical protein Syncc9902_0718 [Synechococcus sp. CC9902]
gi|78168589|gb|ABB25686.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 222
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQ-SAGGCPASLRPGRWLDLYSGTG 167
L++ GG+ +LLSP G D RP V+ A +IL GC RWLDL SG+G
Sbjct: 7 LRLTGGR----RLLSPPGHDTRPTTARVREAVMNILAPRLDGC-------RWLDLCSGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVR--VETFLERAE 223
+ EA+ G V VE + + NL+ D + I +R V +L+R
Sbjct: 56 VMACEALQHGAQLVVAVENHA-STARICSQNLQTVSDSLADEAQIKVIRQDVVHWLQRD- 113
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY-PLRTDMLDTCGCL 282
+ FD + PPY A Y ++ Q+S + +S ++ E+ RT + D C
Sbjct: 114 ---WTEPAFDLVYFDPPYDADLYTQVIQQLSDGGWLHSESLVICEHRSRRTPVTDPCW-- 168
Query: 283 VKIKD-RRFGRTHLAIYGP 300
+KD R++G + L + P
Sbjct: 169 -TVKDQRKYGISSLLMLSP 186
>gi|223984420|ref|ZP_03634558.1| hypothetical protein HOLDEFILI_01852 [Holdemania filiformis DSM
12042]
gi|223963615|gb|EEF67989.1| hypothetical protein HOLDEFILI_01852 [Holdemania filiformis DSM
12042]
Length = 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 104 TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLY 163
T + ++++ GK R + + +PKG RP ++ VK A F + G LDL+
Sbjct: 51 TRSKKMRIVAGKFRSRLIQAPKGDQTRPTLDKVKEAVFSRI------GPYFDGGVMLDLF 104
Query: 164 SGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLER 221
+G+GS+G+EA+SRG V+FV+ P + + I +L+ DV + ++F
Sbjct: 105 AGSGSMGLEALSRGIEHVYFVDRSPAAAAVIKSNIASLQVEAQCDV-----WKCDSFAA- 158
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC-G 280
+ G D + + PPY +M Q+ L+ +++E L+ D D
Sbjct: 159 LRRLAGMGVQLDLVYLDPPYQKQQLHKIMQQLDALNLIRDHGQVILE-SLKEDEFDEAYH 217
Query: 281 CLVKIKDRRFGRTHLAIY 298
L ++K+ +G + ++ Y
Sbjct: 218 QLRRVKEATYGISRISYY 235
>gi|430747935|ref|YP_007207064.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019655|gb|AGA31369.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 26/202 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ--- 109
Query: 228 KDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDS----------FIVVEYPLRTDML 276
+D + V PP Y + + + + L+ + S ++V+ + +
Sbjct: 110 ---QYDLIYVAPPQYKNLWVDAMRRIADRPTLLRRASTDSEGSEEPGLVIVQIDPKEYVQ 166
Query: 277 DTCGCLVKIKDRRFGRTHLAIY 298
G L + + RFG T L Y
Sbjct: 167 LDLGELRETRQNRFGNTLLIFY 188
>gi|312793405|ref|YP_004026328.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180545|gb|ADQ40715.1| methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++L S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRRLKSANIEGLRPTSDRVKEAIFNMI-----APFLNEKLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ K
Sbjct: 56 VGIEFLSRGVKEVTFVEKDMRCI-NLIKENLKNLDLLKRARIIKGDVLKFLK------SK 108
Query: 229 DGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ P FD + + PPY + + +++I ++ + ++ I+VE L D L +++
Sbjct: 109 NCPVFDIIFLDPPYRSDYAKECISEIIENNRINENGLIIVESNLEFRYEDE--NLSILRE 166
Query: 288 RRFGRTHLAIY 298
R +G T + I+
Sbjct: 167 REYGDTKITIF 177
>gi|302558167|ref|ZP_07310509.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
gi|302475785|gb|EFL38878.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
Tu4000]
Length = 195
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D V V +V+S+ E +AEQ
Sbjct: 59 AVGLEALSRGAGHVLLVEADARAVRTVR---------ENVTSLGLPGAEVRSGKAEQIAR 109
Query: 228 KD---GPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P+D + + PPY D E+L+ + L G ++ + VE R
Sbjct: 110 TAPPPEPYDLVFLDPPYAVPDGDLREILLTLRAGGWLAG-EALVTVERSTRGGEFGWPPG 168
Query: 282 LVKIKDRRFG 291
I+ RR+G
Sbjct: 169 FEAIRARRYG 178
>gi|15903826|ref|NP_359376.1| type II DNA modification (methyltransferase [Streptococcus
pneumoniae R6]
gi|116516705|ref|YP_817189.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae D39]
gi|148998500|ref|ZP_01825941.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP11-BS70]
gi|149012441|ref|ZP_01833472.1| asparagine synthetase AsnA [Streptococcus pneumoniae SP19-BS75]
gi|168494790|ref|ZP_02718933.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC3059-06]
gi|168576630|ref|ZP_02722496.1| putative methyltransferase [Streptococcus pneumoniae MLV-016]
gi|225857543|ref|YP_002739054.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae P1031]
gi|307068579|ref|YP_003877545.1| N6-adenine-specific methylase [Streptococcus pneumoniae AP200]
gi|418074814|ref|ZP_12712062.1| methylase, putative [Streptococcus pneumoniae GA11184]
gi|418079415|ref|ZP_12716636.1| methyltransferase [Streptococcus pneumoniae 4027-06]
gi|418081614|ref|ZP_12718822.1| methyltransferase [Streptococcus pneumoniae 6735-05]
gi|418090335|ref|ZP_12727487.1| methyltransferase [Streptococcus pneumoniae GA43265]
gi|418099300|ref|ZP_12736395.1| methyltransferase [Streptococcus pneumoniae 6901-05]
gi|418115489|ref|ZP_12752474.1| methyltransferase [Streptococcus pneumoniae 5787-06]
gi|418117647|ref|ZP_12754615.1| methyltransferase [Streptococcus pneumoniae 6963-05]
gi|418135747|ref|ZP_12772599.1| methyltransferase [Streptococcus pneumoniae GA11426]
gi|418174388|ref|ZP_12810998.1| methylase, putative [Streptococcus pneumoniae GA41277]
gi|418190204|ref|ZP_12826715.1| methyltransferase [Streptococcus pneumoniae GA47373]
gi|418217420|ref|ZP_12844098.1| methylase, putative [Streptococcus pneumoniae Netherlands15B-37]
gi|419432360|ref|ZP_13972488.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP05]
gi|419434590|ref|ZP_13974706.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40183]
gi|419441162|ref|ZP_13981204.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40410]
gi|419465412|ref|ZP_14005302.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04175]
gi|419469772|ref|ZP_14009638.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA06083]
gi|419471848|ref|ZP_14011706.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA07914]
gi|419496144|ref|ZP_14035860.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47461]
gi|419498343|ref|ZP_14038047.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47522]
gi|419504688|ref|ZP_14044354.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47760]
gi|419535454|ref|ZP_14074951.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17457]
gi|421237059|ref|ZP_15693653.1| hypothetical protein AMCSP07_001880 [Streptococcus pneumoniae
2071004]
gi|421266946|ref|ZP_15717825.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR27]
gi|421281962|ref|ZP_15732757.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04672]
gi|421303642|ref|ZP_15754305.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17484]
gi|421310374|ref|ZP_15760998.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA62681]
gi|421314824|ref|ZP_15765410.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47562]
gi|444409010|ref|ZP_21205611.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0076]
gi|444412601|ref|ZP_21208922.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0153]
gi|444422134|ref|ZP_21217797.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0446]
gi|15459468|gb|AAL00587.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077281|gb|ABJ55001.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae D39]
gi|147755693|gb|EDK62739.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP11-BS70]
gi|147763497|gb|EDK70433.1| asparagine synthetase AsnA [Streptococcus pneumoniae SP19-BS75]
gi|183575345|gb|EDT95873.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC3059-06]
gi|183577634|gb|EDT98162.1| putative methyltransferase [Streptococcus pneumoniae MLV-016]
gi|225726212|gb|ACO22064.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae P1031]
gi|306410116|gb|ADM85543.1| N6-adenine-specific methylase [Streptococcus pneumoniae AP200]
gi|353745930|gb|EHD26595.1| methylase, putative [Streptococcus pneumoniae GA11184]
gi|353746035|gb|EHD26699.1| methyltransferase [Streptococcus pneumoniae 4027-06]
gi|353750740|gb|EHD31377.1| methyltransferase [Streptococcus pneumoniae 6735-05]
gi|353760256|gb|EHD40834.1| methyltransferase [Streptococcus pneumoniae GA43265]
gi|353768070|gb|EHD48596.1| methyltransferase [Streptococcus pneumoniae 6901-05]
gi|353783991|gb|EHD64413.1| methyltransferase [Streptococcus pneumoniae 5787-06]
gi|353787762|gb|EHD68163.1| methyltransferase [Streptococcus pneumoniae 6963-05]
gi|353836885|gb|EHE16972.1| methylase, putative [Streptococcus pneumoniae GA41277]
gi|353853034|gb|EHE33018.1| methyltransferase [Streptococcus pneumoniae GA47373]
gi|353869908|gb|EHE49787.1| methylase, putative [Streptococcus pneumoniae Netherlands15B-37]
gi|353900369|gb|EHE75925.1| methyltransferase [Streptococcus pneumoniae GA11426]
gi|379536286|gb|EHZ01476.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04175]
gi|379543301|gb|EHZ08452.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA06083]
gi|379544093|gb|EHZ09239.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA07914]
gi|379562655|gb|EHZ27665.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17457]
gi|379575294|gb|EHZ40227.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40183]
gi|379576447|gb|EHZ41372.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40410]
gi|379593164|gb|EHZ57978.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47461]
gi|379598236|gb|EHZ63029.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47522]
gi|379604790|gb|EHZ69545.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47760]
gi|379627736|gb|EHZ92346.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP05]
gi|395601020|gb|EJG61173.1| hypothetical protein AMCSP07_001880 [Streptococcus pneumoniae
2071004]
gi|395866042|gb|EJG77175.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR27]
gi|395879468|gb|EJG90527.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA04672]
gi|395899557|gb|EJH10497.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17484]
gi|395908559|gb|EJH19437.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA62681]
gi|395912452|gb|EJH23311.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47562]
gi|444274563|gb|ELU80210.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0153]
gi|444280459|gb|ELU85826.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0076]
gi|444288513|gb|ELU93406.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PNI0446]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + +++K L +D +V E ++ + CL K++
Sbjct: 108 SGEFDLVFLDPPYAKEQIVADIEKMAKRELFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|419719315|ref|ZP_14246600.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
gi|383304509|gb|EIC95909.1| RNA methyltransferase, RsmD family [Lachnoanaerobaculum saburreum
F0468]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYNATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+ + K
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEKLKSLGEK 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGCLVKIK 286
FD + + PPY + + + S L+ + + I++E +TD L+ ++K+K
Sbjct: 114 ---FDIVFLDPPYQKGFEDKCLDILLNSTLIDEYTLIIIEEDFKTDTAHLEKDWDIIKVK 170
Query: 287 DRRFGRTHLAIY 298
+ + + H+ I+
Sbjct: 171 EYKSNK-HIFIH 181
>gi|417904138|ref|ZP_12547968.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
gi|341847961|gb|EGS89130.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21269]
Length = 180
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|334135210|ref|ZP_08508705.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
gi|333607262|gb|EGL18581.1| RNA methyltransferase, RsmD family [Paenibacillus sp. HGF7]
Length = 236
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + GM RP + VK A F ++ G LDL++GTG
Sbjct: 49 MRVISGSARGRSLKAVPGMSTRPTTDKVKEAIFSMI------GPYFDGGTGLDLFAGTGG 102
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG F++++ + V NLE TG D + I+ L+ E+ +
Sbjct: 103 LGIEALSRGLDTCIFIDLEKKSLDTVR-HNLEVTGLTDRAEIYRNDAGRALKALEK---R 158
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + + PPY LM ++ L+ + + IVVE+ + + V +
Sbjct: 159 GKQFGLVFLDPPYRFKITGELMQKMKGLGLLEQGATIVVEHDAADKLPEVFEGFVMQRRA 218
Query: 289 RFGRTHLAIY 298
+G T + +Y
Sbjct: 219 DYGDTAVTLY 228
>gi|307709741|ref|ZP_07646192.1| conserved hypothetical protein [Streptococcus mitis SK564]
gi|307619443|gb|EFN98568.1| conserved hypothetical protein [Streptococcus mitis SK564]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGP------YFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++++ AL +D +V E ++ + CL K++
Sbjct: 108 SGEFDLVFLDPPYAKEQIVADIEKMAERALFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|295687637|ref|YP_003591330.1| methyltransferase [Caulobacter segnis ATCC 21756]
gi|295429540|gb|ADG08712.1| methyltransferase [Caulobacter segnis ATCC 21756]
Length = 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K +++P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQYRGKAIVAPPGGSTRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S FVE D + N++ V+ +H R
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMTLFGVTRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PFD + PPY E +A++ + + ++ E
Sbjct: 116 GAPFDIAFLDPPYAKGLGEKAVAELKAHDWLAPGAILMFE 155
>gi|419441915|ref|ZP_13981950.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13224]
gi|379555411|gb|EHZ20480.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13224]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEVGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY V + ++++ L +D +V E ++ + CL K++
Sbjct: 108 SGEFDLVFLDPPYAKEQIVVDIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|187250722|ref|YP_001875204.1| putative methyltransferase [Elusimicrobium minutum Pei191]
gi|186970882|gb|ACC97867.1| Putative methyltransferase [Elusimicrobium minutum Pei191]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 109 LQVLGGKARRKKLLS-PKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ G A+ +K+ S K M V P+ + +K + FDI++ PA +LDL++GTG
Sbjct: 1 MRIIAGTAKGRKIFSVSKKMAVVPISDRIKQSVFDIIRPK--IPACY----FLDLFAGTG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+V +EA+SRG ++ ++ + V N+ NLE GF D + V + F+
Sbjct: 55 NVSLEALSRGAAKAVMLDKEVACVKNIK-RNLEHLGFADRGMVFKGDV----LKGIGFLS 109
Query: 228 KDGP--FDYMSVTPPYTAVDYEVL------MAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
P +D + + PPY ++ + L +A+ +K L+ K FIV+++ + + D
Sbjct: 110 AYAPEGYDIIFMGPPYRDINEKPLSLSGPALAEAAKYNLLAKGGFIVLQHH-KHEFFDVP 168
Query: 280 GCLVKIKDRRFGRT 293
++ ++G T
Sbjct: 169 ALFKIYREEKYGDT 182
>gi|406883517|gb|EKD31090.1| methyltransferase [uncultured bacterium]
Length = 178
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R K++L P RP + K F+IL + LDL+SGTGS
Sbjct: 1 MRIIGGELRGKQILPPSNYKARPTTDFAKEGLFNILSNQ----YDFSELSVLDLFSGTGS 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--LDVSSIHTVR--VETFLERAEQ 224
+ E SRGC + VEM N L N + L+V+ + VR V FLE
Sbjct: 57 ISFEFASRGCPMITSVEM------NTLHYNFIKSSISKLEVNGMQVVRHNVFDFLEICRI 110
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+D + PPY + + +I ++ +D ++ E+P +
Sbjct: 111 ------QYDIIFADPPYEISGLDGIPDKILSFPILKEDGILIFEHPAAFSFKNNSNF--- 161
Query: 285 IKDRRFGRTHLAIY 298
IK++++G H + +
Sbjct: 162 IKEKKYGNVHFSFF 175
>gi|384547307|ref|YP_005736560.1| methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|416839760|ref|ZP_11903118.1| methyltransferase [Staphylococcus aureus O11]
gi|416847343|ref|ZP_11907077.1| methyltransferase [Staphylococcus aureus O46]
gi|417895756|ref|ZP_12539734.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
gi|298694356|gb|ADI97578.1| probable methyltransferase [Staphylococcus aureus subsp. aureus
ED133]
gi|323440672|gb|EGA98382.1| methyltransferase [Staphylococcus aureus O11]
gi|323442385|gb|EGB00015.1| methyltransferase [Staphylococcus aureus O46]
gi|341841433|gb|EGS82894.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21235]
Length = 180
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
+GIEA+SRG +V FV+ + V + I NL+ +V + R L +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVKVIKSNIANLDLEAQSEVYKNNADRALKALSK----- 107
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
+D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 108 -RDIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|374309684|ref|YP_005056114.1| methyltransferase [Granulicella mallensis MP5ACTX8]
gi|358751694|gb|AEU35084.1| methyltransferase [Granulicella mallensis MP5ACTX8]
Length = 191
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GGK R + L S +G+ RP + ++ F++L + R++DLY+G+G+
Sbjct: 1 MRVIGGKFRSRVLQSSRGLATRPTSDRLRETLFNVL------ALRIEGARFVDLYAGSGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVL--IPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
VGIEA+SRG F E P V+ + + L+ G + T R+ + V
Sbjct: 55 VGIEALSRGAQFCWFAEKAPAAVTAIRTNVAALKLQGGYAIEDRSTGRL------LQGMV 108
Query: 227 GKDGPFDYMSVTPPYTAV-DYEVLMAQIS--KSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
D + + PPY A DY ++ ++ ++ L+ + + ++ E+ + + ++ G LV
Sbjct: 109 KNLHVADIVFLDPPYEAAEDYSTTLSFLAQNQATLLAEGAVVIAEHSRKKPLSESYGNLV 168
Query: 284 KIK 286
+ +
Sbjct: 169 RTR 171
>gi|424787253|ref|ZP_18214021.1| RNA methyltransferase, RsmD family [Streptococcus intermedius BA1]
gi|422114016|gb|EKU17734.1| RNA methyltransferase, RsmD family [Streptococcus intermedius BA1]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLAGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEAISRG + VE D + ++ NL+ T + + + LER
Sbjct: 55 LAIEAISRGMTTAILVEKDRRAQA-IINQNLKMTREEERFELLKMEANQSLERI------ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++++ L+ D+ IV E D+ + L K +
Sbjct: 108 TGHFDLVLLDPPYAKEQIVTDIEKMAERELLSNDALIVCETDKSVDLPEEIARLGIWKQK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|402833612|ref|ZP_10882225.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
gi|402280105|gb|EJU28875.1| RNA methyltransferase, RsmD family [Selenomonas sp. CM52]
Length = 199
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR +L +PKG RP + +K + F+IL + R LDL++GTG+
Sbjct: 1 MRIITGTARGCRLKTPKGEATRPTADRIKESLFNILGR------RVEEARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FV+ ++++ N T L+ + + VR + R +G
Sbjct: 55 LGLEALSRGAASALFVDEK---TASLIEENAAKTRLLEHAEV--VRADAL--RVLARLGA 107
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
G FD + PPY +E ++ + + L+ D ++VE+
Sbjct: 108 LGRSFDLIFCDPPYRRGLWEKALSSVDRGGLLTPDGCMIVEH 149
>gi|414083504|ref|YP_006992212.1| RsmD family RNA methyltransferase [Carnobacterium maltaromaticum
LMA28]
gi|412997088|emb|CCO10897.1| RNA methyltransferase, RsmD family [Carnobacterium maltaromaticum
LMA28]
Length = 190
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ +K+ + G + RP + +K + F+I+ G LDL++G+G
Sbjct: 1 MRVISGEYGGRKIKAVPGTNTRPTTDKIKESIFNII------GPYFDGGVCLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG + ++ + + + N+E T + ++ L+ + +
Sbjct: 55 LAIEAVSRGFDKAILIDKEILAIKTIK-ENIEMTKEPEKFQLYRNEANRALDALSR---Q 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + E + QI L+ + I+ E +TD+ D LV +
Sbjct: 111 NQAFDLIFMDPPYMKQEIEKQLTQIMDKHLLNSNGKIICEVDKKTDLPDKVAGLVATRRE 170
Query: 289 RFGRTHLAIYGPD 301
+G T + IY D
Sbjct: 171 SYGMTKIVIYQLD 183
>gi|315651228|ref|ZP_07904258.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486524|gb|EFU76876.1| ribosomal RNA small subunit methyltransferase D
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A L +PKG RP + VK F+++ + L +LD+++G+G
Sbjct: 1 MRVISGIAGSLILKTPKGNFTRPTTDKVKETLFNMIAN------DLYDATFLDMFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + +F ++D V + NL T D + + E+ LE+ + K
Sbjct: 55 IGIEALSRGAKKAYFCDIDREAVE-CIKYNLSHTKLSDRAVVLKGGFESNLEKLKSLGEK 113
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCGCLVKIK 286
FD + + PPY + + + S L+ + + I++E +TD L+ ++K+K
Sbjct: 114 ---FDIVFLDPPYQKGFEDKCLDILLNSTLIDEYTLIIIEEDFKTDTAHLEKDWDIIKVK 170
Query: 287 DRRFGRTHLAIY 298
+ + + H+ I+
Sbjct: 171 EYKSNK-HIFIH 181
>gi|242242429|ref|ZP_04796874.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
gi|242234136|gb|EES36448.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis W23144]
Length = 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 116 EVQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 173
Query: 289 RFGRT 293
+G T
Sbjct: 174 HYGLT 178
>gi|430747928|ref|YP_007207057.1| RsmD family RNA methyltransferase [Singulisphaera acidiphila DSM
18658]
gi|430019648|gb|AGA31362.1| RNA methyltransferase, RsmD family [Singulisphaera acidiphila DSM
18658]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 26/202 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTG 167
++V+ G A+ + LL G RP+++ VK A FDIL+ PG LDL++G+G
Sbjct: 1 MRVVAGTAKGRTLLVVPGHGTRPILDRVKTALFDILRPR-------IPGMTMLDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
SVGIEA+S+G F ++ V+ + NL TG D + + V FL +Q
Sbjct: 54 SVGIEALSQGAESCTFTDLAHAAVTTIK-KNLAHTGLADQAVVRRVDALKFLNATDQ--- 109
Query: 228 KDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDS----------FIVVEYPLRTDML 276
+D + V PP Y + + + + L+ + S ++V+ + +
Sbjct: 110 ---QYDLIYVAPPQYKNLWVDAMRRIADRPTLLRRASTDSDGNEEPGLVIVQIDPKEYVQ 166
Query: 277 DTCGCLVKIKDRRFGRTHLAIY 298
G L + + RFG T L Y
Sbjct: 167 LDLGELRETRQNRFGNTLLIFY 188
>gi|417924518|ref|ZP_12567957.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK569]
gi|342835737|gb|EGU69967.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK569]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + +I++ L +D +V E ++ + CL K++
Sbjct: 108 SGEFDLIFLDPPYAKEQIVADIEKIAERELFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|295396027|ref|ZP_06806211.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971115|gb|EFG47006.1| possible rRNA (guanine-N(2)-)-methyltransferase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 181
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L +P+G D RP + V+ + F L G +L LDL++G+G+
Sbjct: 1 MRVIAGKYKSHALTAPQGADTRPTSDRVRESLFATLDMLGMIDGAL----VLDLFAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S+V FVE V V ++++I R+ + V
Sbjct: 57 LGIEALSRGASDVVFVEKAHRAVVTV---------KKNLAAIGEKRLVVQGDATAPAVA- 106
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD--SFIVVEYPLRTDMLDTCGCLVKIK 286
G FD + PPY +D + ++++ + KD S IVVE R+ + L K
Sbjct: 107 -GEFDLILADPPYP-MDETAITRMLTRAEALLKDDSSLIVVERSARSPQPEPPETLNLYK 164
Query: 287 DRRFGRTHLAIY 298
+ +G T + +Y
Sbjct: 165 SKTYGETAIWMY 176
>gi|403069300|ref|ZP_10910632.1| hypothetical protein ONdio_06865 [Oceanobacillus sp. Ndiop]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L + G RP + VK A F ++ G G LDL++G+GS
Sbjct: 1 MRVIAGDLKGRQLKAVPGKSTRPTTDKVKEAVFQVMGPFFGG------GMVLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ P V + NL+ S + L+ A + +
Sbjct: 55 LGIEALSRGMEYGVFVDKHPKAVHTIY-ENLQSMKLEQKSEVFRAEAHRALKAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY VDYE ++ I K L+ I E+ + + L +K
Sbjct: 111 ELIFDLILLDPPYGKVDYEEIIEDILKLHLINGGGTIYCEHDVAEQLPIEHDNLEVMKQE 170
Query: 289 RFGRT 293
+G T
Sbjct: 171 NYGGT 175
>gi|338811257|ref|ZP_08623482.1| methyltransferase [Acetonema longum DSM 6540]
gi|337276726|gb|EGO65138.1| methyltransferase [Acetonema longum DSM 6540]
Length = 184
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ L +P+GM +RP + VK + F IL + + LDL+SGTG+
Sbjct: 1 MRVITGTAKGTILKAPEGMAIRPTTDRVKESVFAILGE------RIVNAKVLDLFSGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLI-PNLEWTGFLDVSS-IHTVRVETFLERAEQFV 226
+GIE++SRG +V FV D VS LI NL+ T + + + + +ER F
Sbjct: 55 LGIESLSRGAQQVVFV--DQSAVSLRLIKENLQRTRMTEKEHLVLRLNISGGMERVMSF- 111
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKS-ALVGKDSFIVVEY 269
G FD + PPY + ++ I K+ +++ + I+VE+
Sbjct: 112 ---GGFDLIFCDPPYNKGLIDNVLGFIDKNISILEGEGLIIVEH 152
>gi|293366888|ref|ZP_06613564.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291319189|gb|EFE59559.1| site-specific DNA-methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 187
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 116 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNKEI--TIAPFQMIKRY 173
Query: 289 RFGRT 293
+G T
Sbjct: 174 HYGLT 178
>gi|225859726|ref|YP_002741236.1| N6-adenine-specific methylase [Streptococcus pneumoniae 70585]
gi|417699343|ref|ZP_12348513.1| methylase, putative [Streptococcus pneumoniae GA41317]
gi|418149308|ref|ZP_12786069.1| methylase, putative [Streptococcus pneumoniae GA13856]
gi|419454016|ref|ZP_13993985.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP03]
gi|419506835|ref|ZP_14046495.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA49194]
gi|225721747|gb|ACO17601.1| N6-adenine-specific methylase [Streptococcus pneumoniae 70585]
gi|332199284|gb|EGJ13362.1| methylase, putative [Streptococcus pneumoniae GA41317]
gi|353811091|gb|EHD91337.1| methylase, putative [Streptococcus pneumoniae GA13856]
gi|379604999|gb|EHZ69752.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA49194]
gi|379624693|gb|EHZ89323.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP03]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIISGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|383788432|ref|YP_005473001.1| putative methyltransferase [Caldisericum exile AZM16c01]
gi|381364069|dbj|BAL80898.1| putative methyltransferase [Caldisericum exile AZM16c01]
Length = 186
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 17/195 (8%)
Query: 109 LQVLGGKARRKKLLSP-KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++ GK + +++SP + +++RP + V+ A FD+++ + +LDL++G+G
Sbjct: 1 MRIVSGKFKGMEIISPPRNLELRPTSDRVREAIFDVIR------FDITDKVFLDLFAGSG 54
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VGIEA+S G V+FVE + V +V+ N+ G + I V FL +
Sbjct: 55 AVGIEAVSEGAKFVYFVENNKKAV-DVIKKNIAKFGIREQCKILVRDVFKFLSDPQL--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC----LV 283
+ D++ + PPY + + S++V K S I+ E+ + L L
Sbjct: 111 -EREVDFIFLDPPYKTHFASETLETLKNSSIVKKGSIIIAEHS-EEEFLSEAYVGKVLLS 168
Query: 284 KIKDRRFGRTHLAIY 298
K K++R+G+ ++ +
Sbjct: 169 KFKEKRYGKIVVSYF 183
>gi|255994774|ref|ZP_05427909.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
49989]
gi|255993487|gb|EEU03576.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
49989]
Length = 179
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + +KL PK + RP E V+ A F +LQ+ + + DL++GTG+
Sbjct: 1 MRIIAGRYKGRKLEVPKAREARPTSEKVREAVFSMLQN------YIEGAKVADLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + F E + + +L N++ G + +H + +++ G
Sbjct: 55 MGLEALSRGAASCIFSE-NNISMQKILAANIKSVGADSSAELHRGDYRSAIDK----TGT 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D D + PPY+ + M I S D+ V+E+ R ++ L +++
Sbjct: 110 D--VDIYFLDPPYSENALDEPMRLILSSLHYNSDTLFVLEHDRRV-VVPEYEKLSVFREK 166
Query: 289 RFGRTHLAIYG 299
R+G T + I G
Sbjct: 167 RYGNTAITILG 177
>gi|189485569|ref|YP_001956510.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287528|dbj|BAG14049.1| putative N6-adenine-specific methylase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 200
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 109 LQVLGGKARRK--KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
L+V+ G AR + K L + +RPM+ +K + FDI+Q P S+ ++DL++G
Sbjct: 3 LKVIAGSARGRIIKTLPHDNLSIRPMLGRIKKSIFDIIQFK--IPYSI----FIDLFAGA 56
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
GSVGIEA+SRG +V F E+ +S ++ N+ GF D + I + + F
Sbjct: 57 GSVGIEALSRGAKKVVFAELSDISLS-LIKRNVNMLGFNDKAKIVKCDI------IKDFA 109
Query: 227 GKDGPFDYMSVTPPY-------TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
+D + + PPY A+ Y VL + + ++ DS ++ + ++ + +
Sbjct: 110 VLQDKYDIIFMGPPYKDENKKALALTYPVL-RNVMRYDILKDDSILITQKHIKEPVGNLV 168
Query: 280 GCLVKIKDRRFGRTHLAIY 298
G L + ++G T ++ Y
Sbjct: 169 G-LECFRTEKYGDTIISFY 186
>gi|389798091|ref|ZP_10201118.1| RsmD family RNA methyltransferase [Rhodanobacter sp. 116-2]
gi|388445746|gb|EIM01804.1| RsmD family RNA methyltransferase [Rhodanobacter sp. 116-2]
Length = 193
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R +L P +RP E V+ F+ L + R LDL +GTG+
Sbjct: 12 IRIIGGSLRNSRLEVPNLPGLRPTAERVRETLFNWLAPV------IDGARCLDLCAGTGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + V FVE D + L NL D + + E FL G
Sbjct: 66 LGIEALSRGAAAVQFVERDA-RAAQALRANLARLK-ADGGQVAALEAEAFLR------GT 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
P D + + PP+ + L Q+ + + ++I VE P
Sbjct: 118 AQPCDLVFLDPPFALELWPALARQLEQGGWLAARAWIYVESP 159
>gi|393201845|ref|YP_006463687.1| N6-adenine-specific methylase [Solibacillus silvestris StLB046]
gi|327441176|dbj|BAK17541.1| N6-adenine-specific methylase [Solibacillus silvestris StLB046]
Length = 193
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 10/191 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++V+ G + L + G RP + VK + F+++ G +DL++G+G
Sbjct: 3 IMRVVAGDRKGMPLKAIAGNTTRPTTDKVKESIFNMI------GPFFNGGLAVDLFAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG F+E D VL N++ + DVS + + + +
Sbjct: 57 GLGIETLSRGADHALFIEKDARAF-QVLQENIKKCRYEDVSELFRTDA---MRAVKALLK 112
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+D DY+ + PPY +Y L+ + + + +D+ I+ E+ + + G ++
Sbjct: 113 RDIVIDYLFLDPPYHKKEYYDLVETLVEGGKLAQDAIIMCEHSTEVTLPENYGRFHLVRQ 172
Query: 288 RRFGRTHLAIY 298
+G T ++IY
Sbjct: 173 EEYGSTIISIY 183
>gi|401408615|ref|XP_003883756.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325118173|emb|CBZ53724.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 741
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAG--GCPASLRPGRWLDLYSGT 166
L V+GG+ ++L+ P+G VRPMM VK A F +LQ G GC R R LDL+SG+
Sbjct: 302 LHVVGGRFGGRRLMMPRGGGVRPMMAKVKEALFSMLQRMGVLGCVGEQRL-RVLDLFSGS 360
Query: 167 GSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G++ +EA SRG + +D + V N+++ G D S I VE L E+
Sbjct: 361 GALSVEAFSRGAEFALLADSSLDSCEAAAV---NVQYCGVADRSYIVRASVEELLLVPER 417
Query: 225 FV 226
++
Sbjct: 418 YL 419
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 11/86 (12%)
Query: 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP---------LR 272
+E+ +G+ + + + PPYT V Y+ L+ + ++VG D+ +VVEYP +R
Sbjct: 516 SERELGRKHTYGLVFLCPPYTKVVYKELIQLLLDCSIVGNDAVVVVEYPKEIGCLPYLIR 575
Query: 273 TDMLDTCGCLVKIKDRRFGRTHLAIY 298
+D + LV +++R +GRT +A+Y
Sbjct: 576 SDA--SSAALVGLRNRAYGRTCIAVY 599
>gi|421862091|ref|ZP_16293918.1| N6-adenine-specific methylase [Paenibacillus popilliae ATCC 14706]
gi|410828346|dbj|GAC44355.1| N6-adenine-specific methylase [Paenibacillus popilliae ATCC 14706]
Length = 155
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216
GR LDL++GTG +GIEA+SRG F++ D V V+ NL TG + + ++
Sbjct: 9 GRALDLFAGTGGLGIEALSRGAEGAVFIDKDARAVE-VVRDNLAATGLANKAEVYRNDAR 67
Query: 217 TFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276
L + ++ F Y+ + PPY D + L+ ++ + L+ D+ IVVE+
Sbjct: 68 RAL---KALAKRNLSFHYILLDPPYRLKDADELLMEMWDNGLLSNDAIIVVEHDASHSYS 124
Query: 277 DTCGCLVKIKDRRFGRTHLAIY 298
+ G L K +G ++IY
Sbjct: 125 ERIGPLSIWKKADYGDIAVSIY 146
>gi|392532296|ref|ZP_10279433.1| hypothetical protein CmalA3_16422 [Carnobacterium maltaromaticum
ATCC 35586]
Length = 190
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ +K+ + G + RP + +K + F+I+ G LDL++G+G
Sbjct: 1 MRVISGEYGGRKIKAVPGTNTRPTTDKIKESIFNII------GPYFDGGVCLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG + ++ + + + N+E T + ++ L+ + +
Sbjct: 55 LAIEAVSRGFDKAILIDKEILAIKTIK-ENIEMTKEPEKFQLYRNEANRALDALSR---Q 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + E + QI L+ + I+ E +TD+ D LV +
Sbjct: 111 NQAFDLIFMDPPYMKQEIEKQLTQIMDKQLLNPNGKIICEVDKKTDLPDKVAGLVATRRE 170
Query: 289 RFGRTHLAIYGPD 301
+G T + IY D
Sbjct: 171 SYGMTKIVIYQLD 183
>gi|257457878|ref|ZP_05623037.1| methyltransferase [Treponema vincentii ATCC 35580]
gi|257444591|gb|EEV19675.1| methyltransferase [Treponema vincentii ATCC 35580]
Length = 189
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 25/194 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ GG + +++ PKG+ +RP M+ ++ + F IL G +LDL++G+G
Sbjct: 1 MRITGGTLKNRQVQCPKGI-IRPAMDRMRESLFAILGDLDG-------KSFLDLFTGSGM 52
Query: 169 VGIEAISRGCSEVHFVEMD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
G+EA SRG V VE D P ++ N + + + + VE +L+R+++
Sbjct: 53 CGLEAYSRGAYPVVLVEKDKDKFPILLKNATLADKKL-------ECKCMPVELYLQRSKK 105
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
FD + + PP+ + L+ I++ ++ + ++ P D+ L +
Sbjct: 106 ------SFDIIYLDPPFPYQFHYDLLYTIAEKPILAEGGLALIHRPKEKDLPGEILSLTR 159
Query: 285 IKDRRFGRTHLAIY 298
I R +GR+ + Y
Sbjct: 160 IDQRAYGRSIVDFY 173
>gi|251810578|ref|ZP_04825051.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
gi|251805738|gb|EES58395.1| possible rRNA (guanine-N(2)-)-methyltransferase [Staphylococcus
epidermidis BCM-HMP0060]
Length = 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 8 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLG--------LDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 60 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 116 EIQFDVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 173
Query: 289 RFGRT 293
+G T
Sbjct: 174 HYGLT 178
>gi|116071058|ref|ZP_01468327.1| hypothetical protein BL107_15470 [Synechococcus sp. BL107]
gi|116066463|gb|EAU72220.1| hypothetical protein BL107_15470 [Synechococcus sp. BL107]
Length = 224
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
L++ GG+ +LLSP G D RP V+ A +IL GC RWLDL SG+G
Sbjct: 9 LRLTGGR----RLLSPPGHDTRPTTARVREAVMNILGPRLDGC-------RWLDLCSGSG 57
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVR--VETFLERAE 223
+ EA+ G V VE P + + N++ D I +R V +L+R
Sbjct: 58 VMACEALQHGAEMVVAVENHP-ATARICSKNVQTVRDSLADEPQIKVIRQDVVHWLQRD- 115
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
+ FD + PPY A Y ++ Q+S + DS ++ E+ R + G V
Sbjct: 116 ---WTEPAFDLVYFDPPYDADLYSQVIHQLSCGGWLHNDSLVICEHRSRRTPVTEPGWTV 172
Query: 284 KIKDRRFGRTHLAIYGP 300
+ R++G + L + P
Sbjct: 173 Q-DQRKYGISSLLMLSP 188
>gi|417002358|ref|ZP_11941747.1| RNA methyltransferase, RsmD family [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479499|gb|EGC82595.1| RNA methyltransferase, RsmD family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 14/191 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS-AGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L PK RP VK A FD+L C A LDL+SGTG
Sbjct: 1 MRVVAGKYKGFNLKPPKEKTSRPTDNKVKEAIFDMLYPLKSNCVA-------LDLFSGTG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIE +SRG + V+F E + + +L NL ++ I +++ F + +++
Sbjct: 54 QMGIEFLSRGVNLVYFNERN-FSTYKILNENLRK---INSDGIKVSKLD-FKKALKKYKD 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FDY+ + PPY + I + L+ ++ IV E D L KIK+
Sbjct: 109 NNISFDYIFLDPPYMGDLLNQAIELIVEYDLLNEEGIIVTESDRDLD-FSYIETLEKIKE 167
Query: 288 RRFGRTHLAIY 298
+ +GR + Y
Sbjct: 168 KSYGRKIIKFY 178
>gi|326693818|ref|ZP_08230823.1| N6-adenine-specific methylase [Leuconostoc argentinum KCTC 3773]
Length = 184
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ R +L + G RP + VK A F +L L G LDLY+GTG
Sbjct: 1 MRVVAGRFRGTRLEAVAGDKTRPTTDKVKEAMFSMLMP------FLDGGNVLDLYAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + V+ + V+ N++ T + SI + + L+ FV
Sbjct: 55 LGIEAVSRGMTHATLVDRQFQAIK-VIQSNVDKTHDIAAFSILKMPAQQALQN---FVAA 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY M ++++ L+ + I+ E ++ + ++ +
Sbjct: 111 QQTFDLVFLDPPYAKETIAADMQFMAQNGLLADGAIILAESNDAANLPEASTQFNIVRQK 170
Query: 289 RFGRTHLAIYGPD 301
++G T + IY D
Sbjct: 171 QYGITVVTIYQFD 183
>gi|293374736|ref|ZP_06621044.1| RNA methyltransferase, RsmD family [Turicibacter sanguinis PC909]
gi|325837641|ref|ZP_08166488.1| RNA methyltransferase, RsmD family [Turicibacter sp. HGF1]
gi|292646650|gb|EFF64652.1| RNA methyltransferase, RsmD family [Turicibacter sanguinis PC909]
gi|325490943|gb|EGC93242.1| RNA methyltransferase, RsmD family [Turicibacter sp. HGF1]
Length = 183
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 10/193 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + + + KG + RP + VK + F+I+ G LDL+ G+G+
Sbjct: 1 MRVVAGTLKGRSIKAVKGTNTRPTTDKVKESIFNII------GPYFDGGIALDLFGGSGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE++SRG +V FV+ + + N + N++ D I+ + + V +
Sbjct: 55 LGIESLSRGIDKVIFVDRETIAI-NTIKENVKDLRIEDCVEIYR---NDYFRALKALVKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D FD + + PPY ++ +++ L+ I+ E ++ + G + ++K
Sbjct: 111 DIQFDLILLDPPYKGQKINEIIEFVNEHNLLASGGIIMAECLKEDELHEMIGDIKQVKRE 170
Query: 289 RFGRTHLAIYGPD 301
+G T + IY D
Sbjct: 171 IYGITSITIYHRD 183
>gi|104773850|ref|YP_618830.1| methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|116513857|ref|YP_812763.1| N6-adenine-specific methylase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815477|ref|YP_005851868.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418029231|ref|ZP_12667779.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418035978|ref|ZP_12674416.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|103422931|emb|CAI97593.1| Putative methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116093172|gb|ABJ58325.1| N6-adenine-specific methylase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125514|gb|ADY84844.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354689137|gb|EHE89149.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354690949|gb|EHE90891.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 183
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSQKTRPTSDKVKESLFNSLGQFFAG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
++GIEA+SRGC H V D ++ N++ T D + T+ + L + F
Sbjct: 54 ALGIEAVSRGCE--HAVLNDVSRPACQIIRKNVDLTKEPDRFEVFTMPAKVAL---KVFA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
++ FD + + PPY M ++ L+ + IVVE +TD+ G + +K
Sbjct: 109 DQERKFDLVFLDPPYAKQQMVKDMTALASLDLLKPGAKIVVETDEQTDLPPVAGFDL-LK 167
Query: 287 DRRFGRTHLAIY 298
D G+T + IY
Sbjct: 168 DHHMGKTIVRIY 179
>gi|345849806|ref|ZP_08802813.1| DNA methylase [Streptomyces zinciresistens K42]
gi|345638787|gb|EGX60287.1| DNA methylase [Streptomyces zinciresistens K42]
Length = 195
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L+ R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLFSTWQSLLGGP--LKGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG S VE D + V+ N+ G E +AEQ +
Sbjct: 59 AVGLEALSRGASHTLLVEADA-RAARVVRENVRGLGLPG--------AEVRSGKAEQIIR 109
Query: 228 KDG---PFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + ++ + VE R
Sbjct: 110 NPAPAEPYDLVFLDPPYAVPDGDLREILLTLRSGGWLAPEALVTVERSTRGGEFGWPDGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 EAIRARRYG 178
>gi|357014355|ref|ZP_09079354.1| RsmD family RNA methyltransferase [Paenibacillus elgii B69]
Length = 189
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G A+ + L + GM RP + VK A F ++ G+ LDL++GTG
Sbjct: 1 MRVISGSAKGRPLKAVPGMGTRPTTDKVKEAVFSMIGP------YFEGGQVLDLFAGTGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG ++D + + NL+ TG + + ++ L+ + +
Sbjct: 55 LSIEALSRGMDRAVLTDVDKKAIDTIR-HNLQATGLTERAEVYRNDAMRALKALSK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY L+ ++ + L+ ++IVVE+ G L ++
Sbjct: 111 EARFDLVFLDPPYKLKVIGELLEELQQGGLLADGAWIVVEHDAEDRHEGDFGELEWLRRA 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 EYGDTAITIY 180
>gi|386714151|ref|YP_006180474.1| putative methyltransferase [Halobacillus halophilus DSM 2266]
gi|384073707|emb|CCG45200.1| putative methyltransferase [Halobacillus halophilus DSM 2266]
Length = 182
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + ++L S RP + VK A F + G+ LDL++G+G
Sbjct: 1 MRVIAGDFKGRQLKSVPTHQTRPTTDKVKEAVFHKI------GPFFDGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETF---LER 221
+GIEA+SRG S FV+ + + +IHT+ R E F +R
Sbjct: 55 LGIEALSRGVSSCIFVDQQQKAIQTIY------------ENIHTLDLTDRTEVFRTDAKR 102
Query: 222 AEQFVGKDG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
A + GK G FDY+ + PPY Y+ LM + L+ + I+ E+ ++ + G
Sbjct: 103 AMKAAGKRGLTFDYIFLDPPYKKFSYKELMEALLDYELLAEQGVIICEHDASEEIPASIG 162
Query: 281 CLVKIKDRRFG 291
L ++ +G
Sbjct: 163 RLDQMDSDVYG 173
>gi|352085401|ref|ZP_08953021.1| methyltransferase [Rhodanobacter sp. 2APBS1]
gi|351681822|gb|EHA64936.1| methyltransferase [Rhodanobacter sp. 2APBS1]
Length = 193
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG R +L P +RP E V+ F+ L + R LDL +GTG+
Sbjct: 12 IRIIGGSLRNSRLEVPNLPGLRPTAERVRETLFNWLAPV------IDGARCLDLCAGTGA 65
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + V FVE D + L NL D + + E FL G
Sbjct: 66 LGIEALSRGAAAVQFVERDA-RAAQALRANLARLK-ADGGQVAALEAEAFLR------GT 117
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
P D + + PP+ + L Q+ + + ++I VE P
Sbjct: 118 AQPCDVVFLDPPFALELWPALARQLEQGGWLAARAWIYVESP 159
>gi|386814240|ref|ZP_10101464.1| putative methyltransferase [planctomycete KSU-1]
gi|386403737|dbj|GAB64345.1| putative methyltransferase [planctomycete KSU-1]
Length = 180
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 121 LLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPG-RWLDLYSGTGSVGIEAISRGCS 179
L S KG RP+++ VKG+ F IL + + PG R +DLY+GTG++GIEA+SRG
Sbjct: 3 LCSVKGDKTRPILDRVKGSLFSIL-------SHVIPGSRIIDLYAGTGAIGIEALSRGAK 55
Query: 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239
FVE + + V+ NLE T D + + V + E+ D + +P
Sbjct: 56 FCIFVEREKSAI-QVIKKNLETTKLQDKAQVLQYDVFEIVRYLEE---NKREVDLVLASP 111
Query: 240 PYTAVD-------YEVLMAQISKSALVGKDSFIVVEY-PLRTDMLDTCGCLVKIKDRRFG 291
PY ++ ++ + + ++ D I++++ + + CL R +G
Sbjct: 112 PYPCIEKIPYMNKLFIVFSSLCNKRIIQPDGLIILQHRTMEFTIPPEASCLELFDTRVYG 171
Query: 292 RTHLAIY 298
T L+ +
Sbjct: 172 DTQLSFF 178
>gi|239787518|emb|CAX83988.1| conserved uncharacterized protein [uncultured bacterium]
Length = 188
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 7/81 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL----QSAGGCPASLRPGRWLDLYS 164
++++GGK R K L++P+G DVRP + +G+ FDIL Q G A + R D+++
Sbjct: 1 MRIIGGKFRGKSLIAPEGRDVRPTSDRARGSLFDILLHRFQDTSGSLAGV---RVADVFA 57
Query: 165 GTGSVGIEAISRGCSEVHFVE 185
GTG++G+EA+SRG S V F++
Sbjct: 58 GTGAMGLEALSRGASHVTFLD 78
>gi|224368228|ref|YP_002602391.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
gi|223690944|gb|ACN14227.1| putative small methyltransferase [Desulfobacterium autotrophicum
HRM2]
Length = 189
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R KKL++P+G++ RP ++ ++ + F+I+ + R LDL++GTG+
Sbjct: 1 MRIISGKYRGKKLITPRGLETRPTLDRIRESIFNIISQ------RIANARVLDLFAGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G+EA+SR FV+ + V+ N+ F +++ ++ L RA
Sbjct: 55 LGLEALSRNAGFATFVD-NSREACTVINKNIALLQFEHCTTV----IQHDLTRAGTLARI 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
+ FD + + PPY + ++ L+ ++ +V E+ + + L
Sbjct: 110 RPKKFDLVFMDPPYRKGLIDAVLENSEFIDLLADNALVVCEHGAQENPGINISKLDITDQ 169
Query: 288 RRFGRTHLAIYGPDWAQ 304
R++G+T + + A+
Sbjct: 170 RKYGKTQITFLTLNNAE 186
>gi|419777579|ref|ZP_14303489.1| RNA methyltransferase, RsmD family [Streptococcus intermedius SK54]
gi|383844603|gb|EID82015.1| RNA methyltransferase, RsmD family [Streptococcus intermedius SK54]
Length = 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLAGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEAISRG + VE D + ++ NL+ T + + + LER
Sbjct: 55 LAIEAISRGMASAILVEKDRRAQA-IINQNLKMTREEERFELLKMEANQSLERI------ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++++ L+ D+ IV E D+ + L K +
Sbjct: 108 IGHFDLVLLDPPYAKEQIVTDIEKMAERELLSNDALIVCETDKSVDLPEEIAGLGIWKQK 167
Query: 289 RFGRTHLAIY 298
+G + + +Y
Sbjct: 168 IYGISKVTVY 177
>gi|307705548|ref|ZP_07642400.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307620825|gb|EFN99909.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D IV E ++ + CL
Sbjct: 108 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMIVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|169832754|ref|YP_001695324.1| N6-adenine-specific methylase [Streptococcus pneumoniae
Hungary19A-6]
gi|194398376|ref|YP_002038552.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae G54]
gi|419491881|ref|ZP_14031615.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47179]
gi|419494077|ref|ZP_14033801.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47210]
gi|419533154|ref|ZP_14072668.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47794]
gi|421275667|ref|ZP_15726495.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA52612]
gi|421290521|ref|ZP_15741270.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA54354]
gi|421305912|ref|ZP_15756565.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA62331]
gi|168995256|gb|ACA35868.1| N6-adenine-specific methylase [Streptococcus pneumoniae
Hungary19A-6]
gi|194358043|gb|ACF56491.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae G54]
gi|379591413|gb|EHZ56238.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47179]
gi|379592056|gb|EHZ56874.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47210]
gi|379604898|gb|EHZ69652.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47794]
gi|395872842|gb|EJG83938.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA52612]
gi|395886250|gb|EJG97267.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA54354]
gi|395904341|gb|EJH15258.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA62331]
Length = 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIISGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|148985549|ref|ZP_01818738.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP3-BS71]
gi|387758143|ref|YP_006065122.1| putative methylase [Streptococcus pneumoniae OXC141]
gi|418232950|ref|ZP_12859535.1| methyltransferase [Streptococcus pneumoniae GA07228]
gi|418237406|ref|ZP_12863971.1| methyltransferase [Streptococcus pneumoniae GA19690]
gi|147922269|gb|EDK73390.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP3-BS71]
gi|301800732|emb|CBW33380.1| putative methylase [Streptococcus pneumoniae OXC141]
gi|353885633|gb|EHE65421.1| methyltransferase [Streptococcus pneumoniae GA07228]
gi|353891101|gb|EHE70859.1| methyltransferase [Streptococcus pneumoniae GA19690]
gi|429320113|emb|CCP33443.1| putative methylase [Streptococcus pneumoniae SPN034183]
gi|429321931|emb|CCP35417.1| putative methylase [Streptococcus pneumoniae SPN994039]
gi|429323751|emb|CCP31458.1| putative methylase [Streptococcus pneumoniae SPN994038]
Length = 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE ++ N++ T + + + E LER
Sbjct: 55 LSIEAVSRGMSNAVLVERGRK-AQTIVAENIQMTKEIGKFQLLKMDAERALERV------ 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPYT E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYTK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|448748029|ref|ZP_21729678.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
gi|445564424|gb|ELY20545.1| RNA methyltransferase, RsmD [Halomonas titanicae BH1]
Length = 224
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 14/160 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ RR++L +RP + V+ F+ L L + LDL++GTG+
Sbjct: 45 LRIIGGEFRRRQLPVLDSPGLRPTPDRVRETLFNWLGQ------QLYGQQVLDLFAGTGA 98
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG S V FVE DP V + L NL + + S++H V+T+L R +
Sbjct: 99 LGIEAVSRGASWVDFVERDPRVAAQ-LSTNLA-SLNITASAVHVNDVQTYLTRPAK---- 152
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
P+ + + PP+ + + S + ++ I +E
Sbjct: 153 --PYTLVFLDPPFHQQLAAPCCSTLETSGWLDNEAMIYLE 190
>gi|218885279|ref|YP_002434600.1| methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756233|gb|ACL07132.1| methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 190
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ + L + +G RP M V+ A F +L+S G LR LDL++G+GS
Sbjct: 1 MRIIAGEYGGRVLKTAEGPGYRPAMSRVREALFSMLESRGVVWPGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ EA+SRG +E FVE P + ++ N + G I R + E + + +
Sbjct: 58 LAFEALSRGAAEAWFVETAP-KAAELIRKNAQTLG------IAQERWQVVQEDCNKLLAR 110
Query: 229 DG--PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR--TDMLDTCGCLVK 284
FD + + PPY A + ++ + + VE R D LV
Sbjct: 111 RSRTTFDVVFIDPPYGAGQLSPTLRNAVRNGWLADGGIVAVEVEARLPLDPERENAALVP 170
Query: 285 IKDRRFGRTHLAIY 298
I DR +G+T + ++
Sbjct: 171 IVDRTYGQTRIVLW 184
>gi|336179516|ref|YP_004584891.1| methyltransferase [Frankia symbiont of Datisca glomerata]
gi|334860496|gb|AEH10970.1| methyltransferase [Frankia symbiont of Datisca glomerata]
Length = 185
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++GG AR + P G RP + + F+ L S LR R+ DLY+G+G
Sbjct: 1 MARIIGGIARGCPIRVPPGGGTRPTSDRAREGLFNTLASL----VELRGARFADLYAGSG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS----SIHTVRVETFLERAE 223
+VG+EA+SRG S V FV+ V L N GF V S+ V VE ERA
Sbjct: 57 AVGLEALSRGASHVLFVDRSAAAV-RTLRANAAALGFTGVEILFRSVQRV-VEIMPERA- 113
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
FD + + PPY D + ++A + A + D VVE R
Sbjct: 114 --------FDVVFLDPPYALSDSALTSVLAGLIAGAWLQPDGVCVVERSRRGGPPVWPDG 165
Query: 282 LVKIKDRRFGRTHL 295
++ I++R +G L
Sbjct: 166 IITIRNRAYGEGVL 179
>gi|365959217|ref|YP_004940784.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
gi|365735898|gb|AEW84991.1| hypothetical protein FCOL_00700 [Flavobacterium columnare ATCC
49512]
Length = 201
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK + ++L++PK + VRP ++ K + F+IL + + R LDL+SGTG+
Sbjct: 1 MRIISGKYKGRRLVAPKNLPVRPTTDMAKESLFNILNNY----FNFNGLRVLDLFSGTGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ E +SRG V V+ D ++ + E+ ++++ I + V FLE+ +
Sbjct: 57 ISYEFLSRGAESVISVDGDFGCINYIKKTAKEFE--MNITPIKS-DVFKFLEKNKN---- 109
Query: 229 DGPFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
+D + PPY ++E ++A I ++ L+ D +++E+ T +
Sbjct: 110 --NYDIIFADPPYDLDQKNFEKILALIFENNLLDPDGMLIIEHSKYTKL 156
>gi|349686310|ref|ZP_08897452.1| N6-adenine-specific methylase [Gluconacetobacter oboediens 174Bp2]
Length = 191
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPA-SLRPGRWLDLYSGTG 167
++++ G R + L +P G RP + V+ A FD L A A ++R R +D ++GTG
Sbjct: 1 MRIIAGDCRGRTLRAPPGQTTRPTADRVRQALFDTLAHAPWAGADTMRGARVMDGFAGTG 60
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA+SRG + FVE D + L N+ G D + I R + L + + G
Sbjct: 61 ALGLEALSRGAASAVFVERDRAAL-RTLRENVATCGMGDRAII---RAQDMLRLSPR--G 114
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
P D + + PPY +A + + + + +VVE
Sbjct: 115 AAAPVDMVFLDPPYNQALPARALAVLDRGGWLHPATLVVVE 155
>gi|417687452|ref|ZP_12336722.1| methylase, putative [Streptococcus pneumoniae GA41301]
gi|418160708|ref|ZP_12797406.1| methylase, putative [Streptococcus pneumoniae GA17227]
gi|419521920|ref|ZP_14061514.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05245]
gi|332072156|gb|EGI82642.1| methylase, putative [Streptococcus pneumoniae GA41301]
gi|353820891|gb|EHE01073.1| methylase, putative [Streptococcus pneumoniae GA17227]
gi|379537400|gb|EHZ02584.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA05245]
Length = 179
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|406664721|ref|ZP_11072496.1| Ribosomal RNA small subunit methyltransferase D [Bacillus
isronensis B3W22]
gi|405387569|gb|EKB46993.1| Ribosomal RNA small subunit methyltransferase D [Bacillus
isronensis B3W22]
Length = 190
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK + F+++ G +DL++G+G
Sbjct: 1 MRVVAGDRKGMPLKAIAGNTTRPTTDKVKESIFNMI------GPFFNGGLAVDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIE +SRG F+E D VL N++ + DVS + + + + +
Sbjct: 55 LGIETLSRGADHALFIEKDARAF-QVLQENIKKCRYEDVSELFRTDA---MRAVKALLKR 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
D DY+ + PPY +Y L+ + + + +D+ I+ E+ + + G ++
Sbjct: 111 DIVIDYLFLDPPYHKKEYYDLVETLVEGGKLAQDAIIMCEHSTEVTLPENYGRFHLVRQE 170
Query: 289 RFGRTHLAIY 298
+G T ++IY
Sbjct: 171 EYGSTIISIY 180
>gi|268315830|ref|YP_003289549.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345302121|ref|YP_004824023.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
gi|262333364|gb|ACY47161.1| methyltransferase [Rhodothermus marinus DSM 4252]
gi|345111354|gb|AEN72186.1| methyltransferase [Rhodothermus marinus SG0.5JP17-172]
Length = 182
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ RRK L +PKG RP + + + F +++S L LDL++GTG+
Sbjct: 1 MRIIAGRFRRKTLRAPKGHLTRPTTDRTRESLFHLVESR----MDLEGADVLDLFAGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EAISRG V FVE+ V++ V N G + +R + +E ++ G
Sbjct: 57 LGLEAISRGAVAVTFVELQGPVLACVR-ENARALGVEEACEF--IRGDA-VEYLRRYSGP 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSAL--VGKDSFIVVEYPLRTDM-----LDTCGC 281
PFD + PPY + + Q+ + A + V+E+ R + LDT
Sbjct: 113 --PFDLILADPPYDLPE----LPQLPELAFPHLKPHGLFVLEHDKRHNFEGHPHLDTS-- 164
Query: 282 LVKIKDRRFGRTHLAIYGPDWAQK 305
RR+GRT ++++ P ++
Sbjct: 165 ------RRYGRTIVSVFRPQPVER 182
>gi|307710740|ref|ZP_07647168.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617346|gb|EFN96518.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 179
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++ + ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKTDA--ERALEQVA- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 109 -GEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKTVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|443474823|ref|ZP_21064791.1| methyltransferase [Pseudanabaena biceps PCC 7429]
gi|443020412|gb|ELS34374.1| methyltransferase [Pseudanabaena biceps PCC 7429]
Length = 181
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC 178
+ + +P G+ RP V+ A F+ILQS ++ WLD+ +G+G++G EA++RG
Sbjct: 9 RSIKTPTGLSTRPTPSKVRAAVFNILQS------RIKNANWLDICAGSGAMGAEALTRGA 62
Query: 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFVGKDGPFDY 234
S+V +E+ + ++ N W F V ++ + QF FD
Sbjct: 63 SKVVGIELSA-IACRIVHEN--WHKFAQPEQQFQVIKGDAIKILPKLQPQF------FDL 113
Query: 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTH 294
+ PPY + YE ++ + L+ + + + E + D G L+ R++G+T
Sbjct: 114 VYFDPPYQSDLYEPVLKALPP--LLAESALAIAECDRLRPLPDEIGNLICYDRRQYGQTA 171
Query: 295 LAIY 298
LA Y
Sbjct: 172 LAFY 175
>gi|431432479|ref|ZP_19512946.1| RsmD family RNA methyltransferase [Enterococcus faecium E1630]
gi|431758995|ref|ZP_19547613.1| RsmD family RNA methyltransferase [Enterococcus faecium E3346]
gi|430587539|gb|ELB25761.1| RsmD family RNA methyltransferase [Enterococcus faecium E1630]
gi|430626768|gb|ELB63328.1| RsmD family RNA methyltransferase [Enterococcus faecium E3346]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 14/198 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G ++L S G + RP + VK + F+++ LDL++G+G
Sbjct: 1 MRIISGNYGGRRLKSLAGANTRPTTDKVKESIFNMI------GPYFDGETVLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQFV 226
+ IEA+SRGCS H V +D + ++ N+E T + T++++ ++A E+
Sbjct: 55 LAIEAVSRGCS--HAVCVDKNYQALKIIKENIEITK--EPEKFTTIKLDA--DKAIERLA 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ FDY+ + PPY + ++ + L K++ IV E ++L+T +I+
Sbjct: 109 EEKQQFDYLFLDPPYAKQKIIDQIHKMEELGLFSKNAVIVCETDKTVELLETVAGFHQIR 168
Query: 287 DRRFGRTHLAIYGPDWAQ 304
+ +G T + IY + Q
Sbjct: 169 KQIYGITAVTIYRKEGNQ 186
>gi|367473023|ref|ZP_09472593.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
gi|365274707|emb|CCD85061.1| putative methyltransferase [Bradyrhizobium sp. ORS 285]
Length = 184
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRSIASPASRDIRPTQDRLREALFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + + PPY E +A + + + +VVE
Sbjct: 115 --PFALVFLDPPYGKGLAETALASLRDGGWLMPSALLVVE 152
>gi|418167613|ref|ZP_12804265.1| methylase, putative [Streptococcus pneumoniae GA17971]
gi|353828115|gb|EHE08259.1| methylase, putative [Streptococcus pneumoniae GA17971]
Length = 179
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKTVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|313123467|ref|YP_004033726.1| rsmd family RNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280030|gb|ADQ60749.1| RsmD family RNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 183
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSQKTRPTSDKVKESLFNSLGQFFAG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRGC ++ ++ N++ T D + T+ + L + F
Sbjct: 54 ALGIEAVSRGCERAVLNDVS-RPACQIIRKNVDLTKEPDRFEVFTMPAKVAL---KVFAD 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY M ++ L+ + IVVE +TD+ G + +KD
Sbjct: 110 QERKFDLVFLDPPYAKQQMVKDMTALASLDLLKPGAKIVVETDEQTDLPPVAGFDL-LKD 168
Query: 288 RRFGRTHLAIY 298
G+T + IY
Sbjct: 169 HHMGKTIVRIY 179
>gi|422845448|ref|ZP_16892158.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325684376|gb|EGD26545.1| ribosomal RNA small subunit methyltransferase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 183
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLFTLKSQKTRPTSDKVKESLFNSLGQFFAG-------GEVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRGC ++ ++ N++ T D + T+ + L + F
Sbjct: 54 ALGIEAVSRGCERAVLNDVS-RPACQIIRKNVDLTKEPDRFEVFTMPAKVAL---KVFAD 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ FD + + PPY M ++ L+ + IVVE +TD+ G + +KD
Sbjct: 110 QERKFDLVFLDPPYAKQQIVKDMTALASLDLLKPGAKIVVETDEQTDLPPVAGFDL-LKD 168
Query: 288 RRFGRTHLAIY 298
G+T + IY
Sbjct: 169 HHMGKTIVRIY 179
>gi|418284861|ref|ZP_12897564.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|418925293|ref|ZP_13479196.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
gi|365172260|gb|EHM62987.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21209]
gi|377746588|gb|EHT70559.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus CIG2018]
Length = 180
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S + + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEFYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|448744684|ref|ZP_21726568.1| methyltransferase [Staphylococcus aureus KT/Y21]
gi|445561990|gb|ELY18175.1| methyltransferase [Staphylococcus aureus KT/Y21]
Length = 180
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K + S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKAIESMEGRNTRPTMDKVKEGIFNSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|16124482|ref|NP_419046.1| hypothetical protein CC_0227 [Caulobacter crescentus CB15]
gi|221233166|ref|YP_002515602.1| methyltransferase [Caulobacter crescentus NA1000]
gi|13421356|gb|AAK22214.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962338|gb|ACL93694.1| methyltransferase [Caulobacter crescentus NA1000]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +D+++G+G+
Sbjct: 1 MRIVSGQFRGKAIAAPPGDATRPTSDRARQAVFNILEHAAWAP-ELHGARVIDVFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG S FVE D + N++ V+ +H R
Sbjct: 60 LGLEALSRGASFCLFVETDD-AARGAIRENIDAMHLFGVTRVHRRDATDLGPRPAS---A 115
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PFD + + PPY E +A++ + + ++ E
Sbjct: 116 GAPFDIVFLDPPYAKGLGEKAVAELRTHGWLAPGAILMFE 155
>gi|385261486|ref|ZP_10039608.1| RNA methyltransferase, RsmD family [Streptococcus sp. SK643]
gi|385193014|gb|EIF40402.1| RNA methyltransferase, RsmD family [Streptococcus sp. SK643]
Length = 216
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 38 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 91
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D V+ N++ T +V ++++ ERA + V
Sbjct: 92 LSIEAVSRGMSSAVLVERDRK-AQAVVAENIQMTK--EVGKFQLLKIDA--ERALEQV-- 144
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L ++ +V E ++ + CL
Sbjct: 145 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFAENVMVVCETDKSVELPEEIACLGIW 201
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 202 KEKIYGISKVTVY 214
>gi|387627127|ref|YP_006063303.1| putative methylase [Streptococcus pneumoniae INV104]
gi|417694829|ref|ZP_12344015.1| methylase, putative [Streptococcus pneumoniae GA47901]
gi|421234879|ref|ZP_15691495.1| hypothetical protein AMCSP02_001896 [Streptococcus pneumoniae
2061617]
gi|421250227|ref|ZP_15706681.1| hypothetical protein AMCSP19_001869 [Streptococcus pneumoniae
2082239]
gi|444383232|ref|ZP_21181425.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS8106]
gi|444385918|ref|ZP_21183986.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS8203]
gi|301794913|emb|CBW37374.1| putative methylase [Streptococcus pneumoniae INV104]
gi|332199982|gb|EGJ14056.1| methylase, putative [Streptococcus pneumoniae GA47901]
gi|395599496|gb|EJG59662.1| hypothetical protein AMCSP02_001896 [Streptococcus pneumoniae
2061617]
gi|395612791|gb|EJG72827.1| hypothetical protein AMCSP19_001869 [Streptococcus pneumoniae
2082239]
gi|444248886|gb|ELU55385.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS8203]
gi|444250256|gb|ELU56738.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
PCS8106]
Length = 179
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEVGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKTVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|384265085|ref|YP_005420792.1| methyltransferase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898078|ref|YP_006328374.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
amyloliquefaciens Y2]
gi|380498438|emb|CCG49476.1| methyltransferase [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172188|gb|AFJ61649.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
amyloliquefaciens Y2]
Length = 184
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + + L + G RP + VK + F+++ G LDL++G+G
Sbjct: 1 MRVISGSRKGRALKAVPGTSTRPTTDKVKESIFNMIGP------YFDGGTGLDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ D + V N++ L + ++ E L A + +
Sbjct: 55 LGIEALSRGFDRCIFVDRDFKAIQTVK-ANIKALDLLSSAEVYRNDAERALYAAAK---R 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ FD + + PPY + L+ I + ++ + F+V E+ + + G L +
Sbjct: 111 EKGFDGIFLDPPYKEQKLKALIEMIDEQNMLNEGGFVVAEHDKAVALPEAVGALSVTRRE 170
Query: 289 RFGRTHLAIY 298
+G T + IY
Sbjct: 171 IYGLTGVTIY 180
>gi|189346703|ref|YP_001943232.1| hypothetical protein Clim_1185 [Chlorobium limicola DSM 245]
gi|189340850|gb|ACD90253.1| Protein of unknown function methylase putative [Chlorobium limicola
DSM 245]
Length = 183
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+Q++ G R +K+ S D+RP VK + FD L + LDL++G G+
Sbjct: 1 MQIIAGTYRGQKIKSSPSRDIRPCSSRVKKSLFDTLVAR----VDFEEMVVLDLFAGFGN 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G E++SRG V+FV+ + + + G + SI V FL+R +
Sbjct: 57 MGFESLSRGAGFVYFVDRHADALKS-MQDTATHLGVSEQVSIVRSDVSVFLQRTAE---- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
FD + PPY+ DY+ L+ +I+ + ++ D ++VE+ D
Sbjct: 112 --RFDLVFCDPPYSWPDYKTLIERIAGTDILSDDGLMLVEHSANLDF 156
>gi|15901792|ref|NP_346396.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae TIGR4]
gi|111658857|ref|ZP_01409478.1| hypothetical protein SpneT_02000028 [Streptococcus pneumoniae
TIGR4]
gi|148989969|ref|ZP_01821244.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP6-BS73]
gi|149003628|ref|ZP_01828493.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP14-BS69]
gi|168484268|ref|ZP_02709220.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC1873-00]
gi|168487107|ref|ZP_02711615.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC1087-00]
gi|168489974|ref|ZP_02714173.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae SP195]
gi|225855461|ref|YP_002736973.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae JJA]
gi|225861787|ref|YP_002743296.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650988|ref|ZP_04525240.1| RNA methyltransferase, RsmD family protein [Streptococcus
pneumoniae CCRI 1974]
gi|237821627|ref|ZP_04597472.1| RNA methyltransferase, RsmD family protein [Streptococcus
pneumoniae CCRI 1974M2]
gi|303254106|ref|ZP_07340221.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS455]
gi|303260343|ref|ZP_07346313.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP-BS293]
gi|303262491|ref|ZP_07348433.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS292]
gi|303265122|ref|ZP_07351035.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS397]
gi|303266016|ref|ZP_07351911.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS457]
gi|387760059|ref|YP_006067037.1| putative methylase [Streptococcus pneumoniae INV200]
gi|387789014|ref|YP_006254082.1| type II DNA modification methyltransferase [Streptococcus
pneumoniae ST556]
gi|417313429|ref|ZP_12100140.1| methylase, putative [Streptococcus pneumoniae GA04375]
gi|417679931|ref|ZP_12329326.1| methylase, putative [Streptococcus pneumoniae GA17570]
gi|417697139|ref|ZP_12346316.1| methylase, putative [Streptococcus pneumoniae GA47368]
gi|418077186|ref|ZP_12714417.1| methyltransferase [Streptococcus pneumoniae GA47502]
gi|418092574|ref|ZP_12729713.1| methyltransferase [Streptococcus pneumoniae GA44452]
gi|418094773|ref|ZP_12731898.1| methyltransferase [Streptococcus pneumoniae GA49138]
gi|418101446|ref|ZP_12738527.1| methyltransferase [Streptococcus pneumoniae 7286-06]
gi|418108541|ref|ZP_12745576.1| methyltransferase [Streptococcus pneumoniae GA41410]
gi|418110945|ref|ZP_12747963.1| methyltransferase [Streptococcus pneumoniae GA49447]
gi|418122020|ref|ZP_12758962.1| methyltransferase [Streptococcus pneumoniae GA44194]
gi|418126604|ref|ZP_12763508.1| methyltransferase [Streptococcus pneumoniae GA44511]
gi|418131129|ref|ZP_12768011.1| methyltransferase [Streptococcus pneumoniae GA07643]
gi|418140314|ref|ZP_12777137.1| methyltransferase [Streptococcus pneumoniae GA13338]
gi|418142502|ref|ZP_12779312.1| methylase, putative [Streptococcus pneumoniae GA13455]
gi|418145138|ref|ZP_12781930.1| methylase, putative [Streptococcus pneumoniae GA13494]
gi|418153739|ref|ZP_12790475.1| methylase, putative [Streptococcus pneumoniae GA16121]
gi|418158312|ref|ZP_12795025.1| methylase, putative [Streptococcus pneumoniae GA16833]
gi|418165283|ref|ZP_12801948.1| methylase, putative [Streptococcus pneumoniae GA17371]
gi|418170075|ref|ZP_12806715.1| methylase, putative [Streptococcus pneumoniae GA19077]
gi|418176761|ref|ZP_12813351.1| methylase, putative [Streptococcus pneumoniae GA41437]
gi|418181321|ref|ZP_12817889.1| methylase, putative [Streptococcus pneumoniae GA41688]
gi|418185716|ref|ZP_12822254.1| methylase, putative [Streptococcus pneumoniae GA47283]
gi|418187957|ref|ZP_12824478.1| methyltransferase [Streptococcus pneumoniae GA47360]
gi|418192397|ref|ZP_12828898.1| methyltransferase [Streptococcus pneumoniae GA47388]
gi|418201037|ref|ZP_12837478.1| methyltransferase [Streptococcus pneumoniae GA47976]
gi|418203198|ref|ZP_12839624.1| methylase, putative [Streptococcus pneumoniae GA52306]
gi|418215151|ref|ZP_12841884.1| methyltransferase [Streptococcus pneumoniae GA54644]
gi|418219687|ref|ZP_12846351.1| methyltransferase [Streptococcus pneumoniae NP127]
gi|418222002|ref|ZP_12848654.1| methyltransferase [Streptococcus pneumoniae GA47751]
gi|418228466|ref|ZP_12855081.1| methyltransferase [Streptococcus pneumoniae 3063-00]
gi|418230756|ref|ZP_12857354.1| methyltransferase [Streptococcus pneumoniae EU-NP01]
gi|418235153|ref|ZP_12861728.1| methyltransferase [Streptococcus pneumoniae GA08780]
gi|418239485|ref|ZP_12866035.1| methyltransferase [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419423728|ref|ZP_13963940.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA43264]
gi|419437158|ref|ZP_13977235.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13499]
gi|419454369|ref|ZP_13994332.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP04]
gi|419458524|ref|ZP_13998465.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02254]
gi|419460799|ref|ZP_14000725.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02270]
gi|419463099|ref|ZP_14003001.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02714]
gi|419480782|ref|ZP_14020585.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19101]
gi|419482981|ref|ZP_14022766.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40563]
gi|419485172|ref|ZP_14024946.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA43257]
gi|419489660|ref|ZP_14029408.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44386]
gi|419500484|ref|ZP_14040177.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47597]
gi|419502631|ref|ZP_14042311.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47628]
gi|419509050|ref|ZP_14048700.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA49542]
gi|419511210|ref|ZP_14050850.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae NP141]
gi|419515463|ref|ZP_14055087.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
England14-9]
gi|419519690|ref|ZP_14059295.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA08825]
gi|419524421|ref|ZP_14063993.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13723]
gi|419528939|ref|ZP_14068478.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17719]
gi|419531028|ref|ZP_14070553.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40028]
gi|421213892|ref|ZP_15670845.1| hypothetical protein AMCSP12_001792 [Streptococcus pneumoniae
2070108]
gi|421216030|ref|ZP_15672950.1| hypothetical protein AMCSP04_001750 [Streptococcus pneumoniae
2070109]
gi|421221036|ref|ZP_15677871.1| hypothetical protein AMCSP05_001777 [Streptococcus pneumoniae
2070425]
gi|421223285|ref|ZP_15680066.1| hypothetical protein AMCSP14_001721 [Streptococcus pneumoniae
2070531]
gi|421228256|ref|ZP_15684953.1| hypothetical protein AMCSP08_002107 [Streptococcus pneumoniae
2072047]
gi|421242362|ref|ZP_15698887.1| hypothetical protein AMCSP09_000571 [Streptococcus pneumoniae
2081074]
gi|421269182|ref|ZP_15720048.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR95]
gi|421271398|ref|ZP_15722250.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR48]
gi|421273634|ref|ZP_15724473.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR55]
gi|421279729|ref|ZP_15730534.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17301]
gi|421286200|ref|ZP_15736974.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60190]
gi|421294982|ref|ZP_15745702.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA56113]
gi|421296799|ref|ZP_15747505.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58581]
gi|421301798|ref|ZP_15752467.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19998]
gi|14973476|gb|AAK76036.1| putative type II DNA modification methyltransferase [Streptococcus
pneumoniae TIGR4]
gi|147758360|gb|EDK65360.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP14-BS69]
gi|147924629|gb|EDK75715.1| phosphopantetheine adenylyltransferase [Streptococcus pneumoniae
SP6-BS73]
gi|172042484|gb|EDT50530.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC1873-00]
gi|183569957|gb|EDT90485.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
CDC1087-00]
gi|183571592|gb|EDT92120.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae SP195]
gi|225724254|gb|ACO20107.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae JJA]
gi|225728077|gb|ACO23928.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
Taiwan19F-14]
gi|301802648|emb|CBW35414.1| putative methylase [Streptococcus pneumoniae INV200]
gi|302598939|gb|EFL65970.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS455]
gi|302636391|gb|EFL66884.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP14-BS292]
gi|302638509|gb|EFL68974.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae SP-BS293]
gi|302644457|gb|EFL74709.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS457]
gi|302645339|gb|EFL75573.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae BS397]
gi|327389134|gb|EGE87480.1| methylase, putative [Streptococcus pneumoniae GA04375]
gi|332072051|gb|EGI82538.1| methylase, putative [Streptococcus pneumoniae GA17570]
gi|332199395|gb|EGJ13472.1| methylase, putative [Streptococcus pneumoniae GA47368]
gi|353746132|gb|EHD26795.1| methyltransferase [Streptococcus pneumoniae GA47502]
gi|353762374|gb|EHD42934.1| methyltransferase [Streptococcus pneumoniae GA44452]
gi|353763581|gb|EHD44134.1| methyltransferase [Streptococcus pneumoniae GA49138]
gi|353769507|gb|EHD50024.1| methyltransferase [Streptococcus pneumoniae 7286-06]
gi|353777068|gb|EHD57542.1| methyltransferase [Streptococcus pneumoniae GA41410]
gi|353781117|gb|EHD61566.1| methyltransferase [Streptococcus pneumoniae GA49447]
gi|353791495|gb|EHD71871.1| methyltransferase [Streptococcus pneumoniae GA44194]
gi|353795213|gb|EHD75564.1| methyltransferase [Streptococcus pneumoniae GA44511]
gi|353801355|gb|EHD81659.1| methyltransferase [Streptococcus pneumoniae GA07643]
gi|353804113|gb|EHD84399.1| methylase, putative [Streptococcus pneumoniae GA13455]
gi|353804853|gb|EHD85132.1| methylase, putative [Streptococcus pneumoniae GA13494]
gi|353815763|gb|EHD95977.1| methylase, putative [Streptococcus pneumoniae GA16121]
gi|353821097|gb|EHE01276.1| methylase, putative [Streptococcus pneumoniae GA16833]
gi|353828002|gb|EHE08147.1| methylase, putative [Streptococcus pneumoniae GA17371]
gi|353833387|gb|EHE13498.1| methylase, putative [Streptococcus pneumoniae GA19077]
gi|353840387|gb|EHE20453.1| methylase, putative [Streptococcus pneumoniae GA41437]
gi|353842147|gb|EHE22195.1| methylase, putative [Streptococcus pneumoniae GA41688]
gi|353847620|gb|EHE27641.1| methylase, putative [Streptococcus pneumoniae GA47283]
gi|353848838|gb|EHE28849.1| methyltransferase [Streptococcus pneumoniae GA47360]
gi|353854719|gb|EHE34691.1| methyltransferase [Streptococcus pneumoniae GA47388]
gi|353863604|gb|EHE43527.1| methyltransferase [Streptococcus pneumoniae GA47976]
gi|353866202|gb|EHE46105.1| methylase, putative [Streptococcus pneumoniae GA52306]
gi|353868716|gb|EHE48601.1| methyltransferase [Streptococcus pneumoniae GA54644]
gi|353872779|gb|EHE52642.1| methyltransferase [Streptococcus pneumoniae NP127]
gi|353874050|gb|EHE53908.1| methyltransferase [Streptococcus pneumoniae GA47751]
gi|353879795|gb|EHE59617.1| methyltransferase [Streptococcus pneumoniae 3063-00]
gi|353884878|gb|EHE64671.1| methyltransferase [Streptococcus pneumoniae EU-NP01]
gi|353885869|gb|EHE65654.1| methyltransferase [Streptococcus pneumoniae GA08780]
gi|353891869|gb|EHE71620.1| methyltransferase [Streptococcus pneumoniae NorthCarolina6A-23]
gi|353904564|gb|EHE80032.1| methyltransferase [Streptococcus pneumoniae GA13338]
gi|379138756|gb|AFC95547.1| type II DNA modification methyltransferase, putative [Streptococcus
pneumoniae ST556]
gi|379529407|gb|EHY94654.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02254]
gi|379529558|gb|EHY94802.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02270]
gi|379529632|gb|EHY94875.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA02714]
gi|379542099|gb|EHZ07263.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13499]
gi|379555788|gb|EHZ20853.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13723]
gi|379562951|gb|EHZ27957.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17719]
gi|379569370|gb|EHZ34341.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19101]
gi|379570823|gb|EHZ35783.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40028]
gi|379578446|gb|EHZ43358.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA40563]
gi|379581092|gb|EHZ45980.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA43257]
gi|379585172|gb|EHZ50030.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA43264]
gi|379585759|gb|EHZ50614.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA44386]
gi|379598381|gb|EHZ63171.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47628]
gi|379598540|gb|EHZ63328.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA47597]
gi|379610258|gb|EHZ74990.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA49542]
gi|379630665|gb|EHZ95247.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae NP141]
gi|379630810|gb|EHZ95390.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP04]
gi|379635150|gb|EHZ99710.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
England14-9]
gi|379639729|gb|EIA04269.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA08825]
gi|395578605|gb|EJG39120.1| hypothetical protein AMCSP12_001792 [Streptococcus pneumoniae
2070108]
gi|395579410|gb|EJG39910.1| hypothetical protein AMCSP04_001750 [Streptococcus pneumoniae
2070109]
gi|395585514|gb|EJG45894.1| hypothetical protein AMCSP05_001777 [Streptococcus pneumoniae
2070425]
gi|395586570|gb|EJG46938.1| hypothetical protein AMCSP14_001721 [Streptococcus pneumoniae
2070531]
gi|395592977|gb|EJG53231.1| hypothetical protein AMCSP08_002107 [Streptococcus pneumoniae
2072047]
gi|395611493|gb|EJG71565.1| hypothetical protein AMCSP09_000571 [Streptococcus pneumoniae
2081074]
gi|395866148|gb|EJG77280.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR48]
gi|395867047|gb|EJG78172.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR95]
gi|395872949|gb|EJG84043.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
SPAR55]
gi|395878465|gb|EJG89530.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA17301]
gi|395885035|gb|EJG96063.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60190]
gi|395892175|gb|EJH03167.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA56113]
gi|395893785|gb|EJH04768.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58581]
gi|395897933|gb|EJH08886.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19998]
gi|429316761|emb|CCP36479.1| putative methylase [Streptococcus pneumoniae SPN034156]
Length = 179
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEVGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|222147688|ref|YP_002548645.1| hypothetical protein Avi_0907 [Agrobacterium vitis S4]
gi|221734676|gb|ACM35639.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L +PK +RP ++ + + F+IL A P L R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRSLAAPKTDAIRPTIDRTRESLFNILMHA--HPECLDGTRVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
+G+EA+SRGC FVE ++V L W +D +H R + A V
Sbjct: 59 IGLEALSRGCRSALFVE------NSVEGRGLLWEN-IDNLGLHG-RAKILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML-DTCGCLVKI 285
PF + PPY E A K + + ++E R D+L +
Sbjct: 111 STMEPFHLLFADPPYGKGLGEKAFAAADKGGWLVPGALALLEE--RADVLVQAPEAFALL 168
Query: 286 KDRRFGRTHLAIY 298
++R FG T ++ +
Sbjct: 169 EERIFGDTRISFF 181
>gi|221232695|ref|YP_002511849.1| methylase [Streptococcus pneumoniae ATCC 700669]
gi|298230167|ref|ZP_06963848.1| putative methylase [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254773|ref|ZP_06978359.1| putative methylase [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503740|ref|YP_003725680.1| rRNA (guanine-N(2)-)-methyltransferase [Streptococcus pneumoniae
TCH8431/19A]
gi|383937802|ref|ZP_09991038.1| RNA methyltransferase, RsmD family [Streptococcus pseudopneumoniae
SK674]
gi|405760154|ref|YP_006700750.1| methylase [Streptococcus pneumoniae SPNA45]
gi|415700625|ref|ZP_11458159.1| hypothetical protein CGSSp4595_1970 [Streptococcus pneumoniae
459-5]
gi|415750258|ref|ZP_11478172.1| hypothetical protein CGSSpSV35_1930 [Streptococcus pneumoniae SV35]
gi|415753172|ref|ZP_11480154.1| hypothetical protein CGSSpSV36_1774 [Streptococcus pneumoniae SV36]
gi|418083792|ref|ZP_12720986.1| methyltransferase [Streptococcus pneumoniae GA44288]
gi|418085975|ref|ZP_12723152.1| methyltransferase [Streptococcus pneumoniae GA47281]
gi|418119446|ref|ZP_12756400.1| methyltransferase [Streptococcus pneumoniae GA18523]
gi|418124328|ref|ZP_12761257.1| methyltransferase [Streptococcus pneumoniae GA44378]
gi|418128863|ref|ZP_12765754.1| methyltransferase [Streptococcus pneumoniae NP170]
gi|418138074|ref|ZP_12774910.1| methylase, putative [Streptococcus pneumoniae GA11663]
gi|418151487|ref|ZP_12788231.1| methylase, putative [Streptococcus pneumoniae GA14798]
gi|418172125|ref|ZP_12808744.1| methylase, putative [Streptococcus pneumoniae GA19451]
gi|418179097|ref|ZP_12815677.1| methylase, putative [Streptococcus pneumoniae GA41565]
gi|418183513|ref|ZP_12820069.1| methylase, putative [Streptococcus pneumoniae GA43380]
gi|418196634|ref|ZP_12833108.1| methylase, putative [Streptococcus pneumoniae GA47688]
gi|418198822|ref|ZP_12835277.1| methylase, putative [Streptococcus pneumoniae GA47778]
gi|418224182|ref|ZP_12850819.1| methyltransferase [Streptococcus pneumoniae 5185-06]
gi|418973391|ref|ZP_13521385.1| RNA methyltransferase, RsmD family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|419425922|ref|ZP_13966115.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
7533-05]
gi|419428033|ref|ZP_13968212.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
5652-06]
gi|419430213|ref|ZP_13970374.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA11856]
gi|419436778|ref|ZP_13976862.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
8190-05]
gi|419445491|ref|ZP_13985504.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19923]
gi|419447643|ref|ZP_13987646.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
7879-04]
gi|419449762|ref|ZP_13989757.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
4075-00]
gi|419451898|ref|ZP_13991880.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP02]
gi|419474044|ref|ZP_14013891.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13430]
gi|421211810|ref|ZP_15668791.1| hypothetical protein AMCSP03_001852 [Streptococcus pneumoniae
2070035]
gi|421232649|ref|ZP_15689289.1| hypothetical protein AMCSP16_001833 [Streptococcus pneumoniae
2080076]
gi|421245768|ref|ZP_15702265.1| hypothetical protein AMCSP10_001764 [Streptococcus pneumoniae
2081685]
gi|421288384|ref|ZP_15739144.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58771]
gi|421299437|ref|ZP_15750123.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60080]
gi|220675157|emb|CAR69741.1| putative methylase [Streptococcus pneumoniae ATCC 700669]
gi|298239335|gb|ADI70466.1| possible rRNA (guanine-N(2)-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|353753747|gb|EHD34364.1| methyltransferase [Streptococcus pneumoniae GA44288]
gi|353755157|gb|EHD35763.1| methyltransferase [Streptococcus pneumoniae GA47281]
gi|353789929|gb|EHD70317.1| methyltransferase [Streptococcus pneumoniae GA18523]
gi|353794662|gb|EHD75015.1| methyltransferase [Streptococcus pneumoniae GA44378]
gi|353797737|gb|EHD78069.1| methyltransferase [Streptococcus pneumoniae NP170]
gi|353813425|gb|EHD93656.1| methylase, putative [Streptococcus pneumoniae GA14798]
gi|353834248|gb|EHE14352.1| methylase, putative [Streptococcus pneumoniae GA19451]
gi|353841411|gb|EHE21467.1| methylase, putative [Streptococcus pneumoniae GA41565]
gi|353847517|gb|EHE27539.1| methylase, putative [Streptococcus pneumoniae GA43380]
gi|353859301|gb|EHE39253.1| methylase, putative [Streptococcus pneumoniae GA47688]
gi|353860580|gb|EHE40523.1| methylase, putative [Streptococcus pneumoniae GA47778]
gi|353877836|gb|EHE57676.1| methyltransferase [Streptococcus pneumoniae 5185-06]
gi|353900066|gb|EHE75627.1| methylase, putative [Streptococcus pneumoniae GA11663]
gi|379548909|gb|EHZ14022.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA11856]
gi|379549672|gb|EHZ14776.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA13430]
gi|379569912|gb|EHZ34878.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA19923]
gi|379611446|gb|EHZ76170.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
8190-05]
gi|379612399|gb|EHZ77117.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
7879-04]
gi|379616642|gb|EHZ81336.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
5652-06]
gi|379617420|gb|EHZ82109.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
7533-05]
gi|379621628|gb|EHZ86271.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
EU-NP02]
gi|379621760|gb|EHZ86402.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
4075-00]
gi|381308819|gb|EIC49662.1| hypothetical protein CGSSpSV36_1774 [Streptococcus pneumoniae SV36]
gi|381314009|gb|EIC54786.1| hypothetical protein CGSSp4595_1970 [Streptococcus pneumoniae
459-5]
gi|381316804|gb|EIC57548.1| hypothetical protein CGSSpSV35_1930 [Streptococcus pneumoniae SV35]
gi|383349280|gb|EID27225.1| RNA methyltransferase, RsmD family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383715292|gb|EID71262.1| RNA methyltransferase, RsmD family [Streptococcus pseudopneumoniae
SK674]
gi|395572196|gb|EJG32796.1| hypothetical protein AMCSP03_001852 [Streptococcus pneumoniae
2070035]
gi|395593996|gb|EJG54237.1| hypothetical protein AMCSP16_001833 [Streptococcus pneumoniae
2080076]
gi|395606803|gb|EJG66904.1| hypothetical protein AMCSP10_001764 [Streptococcus pneumoniae
2081685]
gi|395885500|gb|EJG96523.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA58771]
gi|395899452|gb|EJH10393.1| RNA methyltransferase, RsmD family [Streptococcus pneumoniae
GA60080]
gi|404277043|emb|CCM07537.1| putative methylase [Streptococcus pneumoniae SPNA45]
Length = 179
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLVFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|455651576|gb|EMF30302.1| DNA methylase [Streptomyces gancidicus BKS 13-15]
Length = 195
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLAVPPGQGTRPTSDRAREGLLSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG V VE D V V +V ++ E +AEQ V
Sbjct: 59 AVGLEALSRGAGHVLLVESDARAVRTVR---------ENVKALGLPGAEVRSGKAEQIVR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ P+D + + PPY D ++ ++ + + D+ + VE R
Sbjct: 110 TAPPEQPYDVVFLDPPYAVPDADLREILLTLRSGGWLADDALVTVERSTRGGEFAWPPGF 169
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 170 EALRARRYG 178
>gi|85819140|gb|EAQ40299.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 186
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + +++ +PK + VRP ++ K A F+I++S + LDL++GTG
Sbjct: 1 MTRIISGKYKGRRIAAPKKLPVRPTTDMAKEALFNIIRS----NYHISQLSVLDLFAGTG 56
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQF 225
++ E SRG ++ V+ V + + E+ SIH ++ + F LERA
Sbjct: 57 NISYEFASRGTDQITAVDGHYGCVQFINKTSQEFD-----FSIHAIKSDVFKYLERAT-- 109
Query: 226 VGKDGPFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
G +D + PPY D+E + + K+ L+ +D +++E+ + LD G +
Sbjct: 110 ----GTYDIIFADPPYDIDIKDFEKIATLVFKNNLLEQDGVLIIEHG-KYSKLD--GFIN 162
Query: 284 KIKDRRFGRTHLAIY 298
++ R +G + +
Sbjct: 163 YVQTRHYGGNAFSFF 177
>gi|429197306|ref|ZP_19189208.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
gi|428666974|gb|EKX66095.1| RNA methyltransferase, RsmD family [Streptomyces ipomoeae 91-03]
Length = 195
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGAAGGRRLSVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LEGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D V ++ ++ E +AEQ +
Sbjct: 59 AVGLEALSRGAGHALLVEADARAARTVRD---------NIRTLGLPGAEVRSGKAEQIIQ 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + +G+++ + VE R
Sbjct: 110 GPPPAEPYDLVFLDPPYAVSDDDLREILLTLRSGGWLGEEALVTVERSTRGGEFRWPTGF 169
Query: 283 VKIKDRRFG 291
I+ RR+G
Sbjct: 170 DAIRARRYG 178
>gi|399073738|ref|ZP_10750645.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
gi|398041254|gb|EJL34326.1| RNA methyltransferase, RsmD family [Caulobacter sp. AP07]
Length = 187
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R K + +P G RP + + A F+IL+ A P L R +DL++G+G+
Sbjct: 1 MRIVSGQYRGKAIATPPGDTTRPTSDRARQAVFNILEHAAWAP-PLHGARVIDLFAGSGA 59
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SRG + FVE D + N++ + +H R T L G
Sbjct: 60 LGLEALSRGAAFCLFVETDD-AARGAIRENVDAFSLFGQTRVHR-RDATDLGLPPASAG- 116
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
GPF+ + PPY E +AQ+ + + ++ E
Sbjct: 117 -GPFNLAFLDPPYARGLGEKALAQLIAGGWLAPGAIVMFE 155
>gi|317485389|ref|ZP_07944268.1| RsmD family RNA methyltransferase [Bilophila wadsworthia 3_1_6]
gi|316923348|gb|EFV44555.1| RsmD family RNA methyltransferase [Bilophila wadsworthia 3_1_6]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP V+ A F +L S G + LR LDL++G+GS
Sbjct: 1 MRIIAGALGGRNLKTVEGPGYRPATAKVREAIFSMLSSRGVVWSGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVG 227
+ EA+SRG EV VE +P VV L N+E D + V FL RA Q
Sbjct: 58 LSFEALSRGAQEVCLVEREPKVV-QCLNQNVEALDVSDRCRVAESDVLRFLRGRAYQ--- 113
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP--LRTDMLDTCGCLVKI 285
P+D + PPY + I K + D +++ E LR D L
Sbjct: 114 ---PYDVIFADPPYGENRLVPTLKAIMKGGWLAPDGYLLAEIEGLLRFDAAAAHEELELE 170
Query: 286 KDRRFGRTHLAIY 298
DR +G+T + ++
Sbjct: 171 IDRNYGQTRIILW 183
>gi|417894265|ref|ZP_12538287.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
gi|341852772|gb|EGS93656.1| RNA methyltransferase, RsmD family [Staphylococcus aureus subsp.
aureus 21201]
Length = 180
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFSSLYDVSGI--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG +V FV+ + V V+ NL S ++ + L+ + +
Sbjct: 53 LGIEALSRGMDKVIFVDQNFKAVK-VIKSNLANLDLEAQSEVYKNNADRALKALSK---R 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
D FD + + PPY + + IS+ L+ ++ IV E+
Sbjct: 109 DIQFDVIFLDPPYNKGLIDKALKLISEFNLLKENGIIVCEF 149
>gi|383649286|ref|ZP_09959692.1| DNA methylase [Streptomyces chartreusis NRRL 12338]
Length = 195
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP + + F QS G P L R LDLY+G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGP--LDGERVLDLYAGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG VE D V V +V ++ E +AEQ +
Sbjct: 59 AVGLEALSRGAGHTLLVEADAKAVRTVRD---------NVKNLGLPGAEVRAGKAEQIIR 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D ++ ++ + + +++ + VE R
Sbjct: 110 TTPPGDPYDLVFLDPPYAVTDDDLREILLTLRAEGWLAEEALVTVERSTRGGEFRWPEGF 169
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 170 EALRSRRYG 178
>gi|365896197|ref|ZP_09434281.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
gi|365423044|emb|CCE06823.1| putative methyltransferase [Bradyrhizobium sp. STM 3843]
Length = 184
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP ++RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPTSRNIRPTQDRLRESLFNILVHAYDNP--IEGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEAISRG + FV+ + +L N+E VS ++ R T L A
Sbjct: 59 LGIEAISRGAAFALFVDNGAEARA-LLRNNVEALALGGVSKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PF + + PPY E +A + + + ++ +V+E + + G +++ R
Sbjct: 115 --PFSLIFLDPPYGKGLAEKALASLREGGWLSPNALLVIEEA-KAAAFNAPGGFAELERR 171
Query: 289 RFGRTHL 295
+ T
Sbjct: 172 AYDDTEF 178
>gi|392428286|ref|YP_006469297.1| hypothetical protein SCIM_0395 [Streptococcus intermedius JTH08]
gi|391757432|dbj|BAM23049.1| conserved hypothetical protein [Streptococcus intermedius JTH08]
Length = 201
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 22 FMRVVAGKYGGRPLKTLAGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 75
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+ IEAISRG + VE D + ++ NL+ T + + + LER
Sbjct: 76 SLAIEAISRGMASAILVEKDRRAQA-IINQNLKMTREEERFELLKMEANQSLERI----- 129
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
G FD + + PPY + ++++ L+ D+ IV E D+ + L K
Sbjct: 130 -IGHFDLVLLDPPYAKEQIVTDIEKMAERELLSNDALIVCETDKSVDLPEEIAGLGIWKQ 188
Query: 288 RRFGRTHLAIY 298
+ +G + + +Y
Sbjct: 189 KIYGISKVTVY 199
>gi|451337391|ref|ZP_21907936.1| Ribosomal RNA small subunit methyltransferase D [Amycolatopsis
azurea DSM 43854]
gi|449419986|gb|EMD25497.1| Ribosomal RNA small subunit methyltransferase D [Amycolatopsis
azurea DSM 43854]
Length = 184
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L+ AG L+ + LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELQGSQVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG S FVE D V VL N+ G TVR E V
Sbjct: 55 GALGLEALSRGASGALFVESDRRAV-EVLKGNVAALGL-----GGTVRAGAV----ESVV 104
Query: 227 GKDGP--FDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P FD + PPY AVD L MA +++ V + +V+E R D
Sbjct: 105 ASPAPETFDIVLADPPY-AVDSTRLGEVMAALAEGRWVTDGALLVIERAARDGEPDWPPG 163
Query: 282 LVKIKDRRFGRTHL 295
++ +R+G T L
Sbjct: 164 FEPMRTKRYGDTAL 177
>gi|389878737|ref|YP_006372302.1| N6-adenine-specific methylase [Tistrella mobilis KA081020-065]
gi|388529521|gb|AFK54718.1| N6-adenine-specific methylase [Tistrella mobilis KA081020-065]
Length = 211
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 110 QVLGGKARRKKLLSPKGMDV-RPMMEVVKGAAFDILQSA---GGCPASLRPGRWLDLYSG 165
+++GG+ R + L +P+G V RP E + A FDIL G A++R DL G
Sbjct: 3 RIVGGRHRGRTLQAPEGRAVIRPTSERAREALFDILGHRDLRGDGEAAVRDRHVADLCCG 62
Query: 166 TGSVGIEAISRGCSEVHFVEMD--PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
G++G+EA+SRG + F++ D ++ L ++ R ET
Sbjct: 63 IGALGLEALSRGAASAVFIDRDRASLAIARANAAKLGEERNCRFAAADLGRPETV----A 118
Query: 224 QFVGKDGPFDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
+ D PFD + + PPY A E ++A + +S + + + VE TD++ L
Sbjct: 119 AALRSDRPFDLILLDPPYDAPAVAEAILAGLVRSGRLASPALVTVELARGTDIV-LPEAL 177
Query: 283 VKIKDRRFGRTHLAIYG 299
+ RR+G+ L I G
Sbjct: 178 RVLDRRRYGKADLLILG 194
>gi|296453498|ref|YP_003660641.1| putative methyltransferase [Bifidobacterium longum subsp. longum
JDM301]
gi|296182929|gb|ADG99810.1| putative methyltransferase [Bifidobacterium longum subsp. longum
JDM301]
Length = 203
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 22/196 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + L +PK RP + K A F L S G L R LDL++GTG+
Sbjct: 1 MRVISGRFKGVALATPK-TGTRPTTDRTKEAIFSHLDSWG----VLDDARVLDLFAGTGA 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNV------LIPNLEWTGFLDVSSIHTVRVETFLERA 222
+GIEA+SRG E+ VE + + L N W L + F ++A
Sbjct: 56 LGIEALSRGARELVAVESSRPAAALITKTLSQLQKNRSWDASL--------KARVFTKKA 107
Query: 223 EQFVGKDG-PFDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
EQ G G FD + + PPY + L+A ++ + +++ I++E +R+D
Sbjct: 108 EQVAGGFGESFDVIFIDPPYAYETAECNQLLANLAVGSATNENTVIMLERSVRSDTPTAP 167
Query: 280 GCLVKIKDRRFGRTHL 295
+ R +G T +
Sbjct: 168 EGWQITESRNYGETAV 183
>gi|241889588|ref|ZP_04776886.1| RNA methyltransferase, RsmD family [Gemella haemolysans ATCC 10379]
gi|241863210|gb|EER67594.1| RNA methyltransferase, RsmD family [Gemella haemolysans ATCC 10379]
Length = 184
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KL + +GM+ RP + +K F+++ + LDL+ GTG
Sbjct: 1 MRVIAGKYRSIKLNAVEGMNTRPTTDKIKENLFNMIDCY--------DCKVLDLFGGTGG 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+GIEA+SRG F++ + V+ N+E +D + R + +RA + G
Sbjct: 53 LGIEALSRGAKHSTFIDGSNNAIK-VIKSNIEKCR-IDATDYSLYRND--FKRALKIFGK 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K+ FD + + PPY + + I ++ L ++ ++ E ++ T L IK+
Sbjct: 109 KEEKFDIIFLDPPYDKGLIDEALQCILENNLCNDEALVICEKSNTEEITITDEKLEVIKE 168
Query: 288 RRFGRTHLAIY 298
+++G T + I+
Sbjct: 169 KQYGITDIVIF 179
>gi|365882267|ref|ZP_09421522.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
gi|365289430|emb|CCD94053.1| putative methyltransferase [Bradyrhizobium sp. ORS 375]
Length = 184
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDNP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAEFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + + PPY E +A + + + +VVE
Sbjct: 115 --PFALVFLDPPYGKGLAETALASLRDGGWLVPSALLVVE 152
>gi|342164649|ref|YP_004769288.1| rRNA (guanine-N(2)-)-methyltransferase [Streptococcus
pseudopneumoniae IS7493]
gi|417850456|ref|ZP_12496361.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK1080]
gi|339452438|gb|EGP65067.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK1080]
gi|341934531|gb|AEL11428.1| rRNA (guanine-N(2)-)-methyltransferase [Streptococcus
pseudopneumoniae IS7493]
Length = 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N++ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQAIVAENIQMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDVMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|331007676|ref|ZP_08330812.1| Ribosomal RNA small subunit methyltransferase D [gamma
proteobacterium IMCC1989]
gi|330418519|gb|EGG93049.1| Ribosomal RNA small subunit methyltransferase D [gamma
proteobacterium IMCC1989]
Length = 213
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L+++GG+ R +KL +RP + ++ F+ LQ ++ LDL++G+G+
Sbjct: 22 LRIIGGQWRGRKLAIADVDGLRPTGDRIRETLFNWLQ------GNIVERYCLDLFAGSGA 75
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET--FLERAEQFV 226
+G+E +SRG ++V +E P + L + E LD S+ V +T ++E+A + V
Sbjct: 76 LGLECLSRGATKVFLLEKHP-AAATQLRQHCE---RLDASNGEVVECDTLGWIEKASKEV 131
Query: 227 GKD-GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
GK+ P D + PP+ A + ++ + S ++ + I +E P
Sbjct: 132 GKNISPIDIAFIDPPFAANLWTAVIDSLESSGILSPTAIIYIESP 176
>gi|172057985|ref|YP_001814445.1| methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171990506|gb|ACB61428.1| methyltransferase [Exiguobacterium sibiricum 255-15]
Length = 189
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + ++ + G RP + VK + F+++ G+ LDL++G+G
Sbjct: 1 MRVISGERKGTRIKAVPGDQTRPTTDKVKESLFNVI------GPYFDGGKALDLFAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRGC E FV+ V + NL+ T + S + V L +
Sbjct: 55 LGIEALSRGCDEAVFVDQHFRAVQTIK-ENLQTTRLTERSRVLKKDVTVALAE----LAG 109
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+ PF + + PPY +A I + ++ + IV E+ T++ D G L I+
Sbjct: 110 ESPFKLIFLDPPYAKEQLAEQVAYIEQHDMLTDNGVIVCEHGSETELPDVIGRLQVIR 167
>gi|317495523|ref|ZP_07953891.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
gi|316914337|gb|EFV35815.1| RsmD family RNA methyltransferase [Gemella morbillorum M424]
Length = 183
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 30/199 (15%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + KL S GM+ RP + +K F++L GR LDL+ GTG+
Sbjct: 1 MRVIAGKYKSIKLNSVDGMNTRPTTDKIKENLFNMLHC---------DGRILDLFGGTGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV--------ETFLE 220
+GIE++SRG F++ + + S+I R+ +
Sbjct: 52 LGIESLSRGAEHAVFIDGSSSAIKTIH------------SNIEKCRIPKTNYDVYRNDYK 99
Query: 221 RAEQFVG-KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTC 279
RA + +G K+ FD + + PPY + + I ++ + K IV E ++
Sbjct: 100 RALKILGKKEEKFDLIFLDPPYDKGLVNLALKSILENNVCNKHCLIVCEKSKDENISIES 159
Query: 280 GCLVKIKDRRFGRTHLAIY 298
L +K++ +G T + I+
Sbjct: 160 VNLEIVKEKEYGITDIVIF 178
>gi|296119650|ref|ZP_06838208.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
gi|295967533|gb|EFG80800.1| RNA methyltransferase, RsmD family [Corynebacterium ammoniagenes
DSM 20306]
Length = 189
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ G+AR + ++ P+ RP + + F L G S R LDL++G+G
Sbjct: 1 MTRIIAGQARGRTIIVPE-EGTRPTSDRAREGLFSSLAVRWGFEGS----RVLDLFAGSG 55
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++G+EA SRG +EVH V+ + N+ N G V IH ++ T+L +A +
Sbjct: 56 ALGLEAASRGAAEVHLVDNSAQAIKNI-THNAGVVGHPKV-HIHQLQASTYLAQAPR--- 110
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY------PLRTDMLDTCGC 281
FD + PPY D + L+ I+ ++ D+ +V+E P D G
Sbjct: 111 --EHFDMVLADPPYDFADVDELLVAITP--VLADDAIVVIERHIDSPEPAWPAEYDPTGQ 166
Query: 282 LVKIKDRRFG--RTHLAIY 298
K+K R +G R +AI+
Sbjct: 167 --KLKKRTYGIARMDMAIF 183
>gi|384412021|ref|YP_005621386.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|335932395|gb|AEH62935.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 183
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSLESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + FVE DP +L N+E G + + V + ++
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMGAQADTRLMAQPVSSLAPISQ----- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY + L+ ++++ ++ +E + + G V +R
Sbjct: 112 --PFDLLLFDPPYNSGGAGALLEKLTRLGWASPSAWASIETAKQETT--SAGGWVVEAER 167
Query: 289 RFGRTHLAI 297
+G++ + +
Sbjct: 168 TYGKSRVTL 176
>gi|312622536|ref|YP_004024149.1| methyltransferase [Caldicellulosiruptor kronotskyensis 2002]
gi|312203003|gb|ADQ46330.1| methyltransferase [Caldicellulosiruptor kronotskyensis 2002]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G+ + +KL S +RP + VK A F+++ P D ++GTG+
Sbjct: 1 MRVISGQQKGRKLKSANIEGLRPTSDRVKEAIFNMIA-----PFLNENLIVADFFAGTGN 55
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VGIE +SRG EV FVE D + N++ NL+ L + I V FL+ V
Sbjct: 56 VGIEFLSRGVREVTFVEKDVRCI-NLIKENLKNLDLLKRARIIKGDVIRFLKSTNCPV-- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY + + +++I +++ + ++ I++E L D L +++R
Sbjct: 113 ---FDIIFLDPPYKSGYAKECISEIIENSRISENGLIIIESNLEFRYEDE--NLSILRER 167
Query: 289 RFGRTHLAIY 298
+G T + I+
Sbjct: 168 EYGDTKITIF 177
>gi|421491258|ref|ZP_15938624.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
gi|400371360|gb|EJP24319.1| RNA methyltransferase, RsmD family [Streptococcus anginosus SK1138]
Length = 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+GS
Sbjct: 1 MRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMD---PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF 225
+ IEAISRG + VE D ++S +I E F +++E+ RA +
Sbjct: 55 LAIEAISRGMASAVLVEKDRRAQTIISQNIIMTKEKERF------ELLKMES--NRALEL 106
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
V G FD + + PPY + ++ + L+ D +V E D+ + L
Sbjct: 107 V--TGQFDLVLLDPPYAKEQIAADIEKLVERELLSDDVLVVCETDKSVDLPEEIAGLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K + +G + + +Y
Sbjct: 165 KQKIYGISKVTVY 177
>gi|334147951|ref|YP_004510880.1| putative methyltransferase [Porphyromonas gingivalis TDC60]
gi|333805107|dbj|BAK26314.1| probable methyltransferase [Porphyromonas gingivalis TDC60]
Length = 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 19/167 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQS---AGGCPASLRPGRWLDLYSG 165
++V+ GK ++ PK + RP + K F+IL + G A +DL+SG
Sbjct: 1 MRVIRGKYGHRRFDVPKSFNARPTTDFAKENLFNILSNRFDFEGLSA-------IDLFSG 53
Query: 166 TGSVGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223
TGS+ +E +SRGCS V +E + LI +L + + V FLER +
Sbjct: 54 TGSIALELVSRGCSSVTSIEKRREHAAFIRNLIKHLNEE---NCWRVFETDVFLFLERNK 110
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
+ +D + PPY + E L ++ +S ++ +D ++E+P
Sbjct: 111 AY----HRYDLVFADPPYALTELEQLPTKVLESNILAEDGLFILEHP 153
>gi|313680143|ref|YP_004057882.1| hypothetical protein [Oceanithermus profundus DSM 14977]
gi|313152858|gb|ADR36709.1| Conserved hypothetical protein CHP00095 [Oceanithermus profundus
DSM 14977]
Length = 174
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
L++LGGKAR + L P RP ++ A FD L+ +LDLY+G+G+
Sbjct: 4 LRILGGKARGRTLAVPD--SARPSPVRLRKALFDYLRGRLPRRGR-----FLDLYAGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
VG+EA S G V VE DP V L N G L V +H + FLER+ + +
Sbjct: 57 VGLEAASEGFEAV-LVESDPGAVKT-LRENAHKLG-LSVRVVHE-SADRFLERSARTGER 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
FD + + PPY D +A++ ++ +VG F+++++P +D++ G + R
Sbjct: 113 ---FDVVFLDPPYDQ-DLAAALARVLEAGIVGPGGFVILQHP--SDLILPLG-----ERR 161
Query: 289 RFGRTHLAI 297
+G + L I
Sbjct: 162 VYGSSALTI 170
>gi|336054324|ref|YP_004562611.1| rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus
kefiranofaciens ZW3]
gi|333957701|gb|AEG40509.1| possible rRNA (Guanine-N(2)-)-methyltransferase [Lactobacillus
kefiranofaciens ZW3]
Length = 183
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 14/195 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK ++ L + K RP + VK + F+ L Q G G LDLY+G+G
Sbjct: 1 MRIISGKYAKRNLYTLKSNRTRPTSDKVKESLFNSLGQFFNG-------GNVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
++GIEA+SRG V+++ + ++ N+ T +I+ +R L + F
Sbjct: 54 ALGIEAVSRGYDRASLVDINHAACA-IIKKNVVLTKEEQRFAIYNMRSSAAL---KLFSE 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
K FD + + PPY M +++K L+ + + IV E T++ G IKD
Sbjct: 110 KQEKFDLIFLDPPYAKEKIAKDMIRMNKLGLLNEQAIIVAETDDHTELGKIMG-FSMIKD 168
Query: 288 RRFG-RTHLAIYGPD 301
G +T + IY D
Sbjct: 169 HHLGKKTIVRIYRKD 183
>gi|452953044|gb|EME58467.1| methyltransferase [Amycolatopsis decaplanina DSM 44594]
Length = 184
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 23/194 (11%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L+ AG LR + LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALEVAG----ELRGAQVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG S FVE D V VL N+ G V E V
Sbjct: 55 GALGLEALSRGASGALFVESDRRAV-EVLKGNVAALGLGGAVRAGAV---------ESVV 104
Query: 227 GKDGP--FDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGC 281
P FD + PPY AVD L MA ++ + + +V+E R D
Sbjct: 105 AAPAPETFDIVLADPPY-AVDSTRLGEVMAALAAGRWITDGALLVIERAARDGEPDWPPG 163
Query: 282 LVKIKDRRFGRTHL 295
+ +R+G T L
Sbjct: 164 FEPTRTKRYGDTAL 177
>gi|319790156|ref|YP_004151789.1| methyltransferase [Thermovibrio ammonificans HB-1]
gi|317114658|gb|ADU97148.1| methyltransferase [Thermovibrio ammonificans HB-1]
Length = 191
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 109 LQVLGGKARRKKLLS-PKGMD---VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYS 164
++V+GGK R +++ S PK D +RP E VK + F IL + L ++LDL++
Sbjct: 1 MRVVGGKYRGRRIKSMPKRADTKLLRPTTERVKESVFSILNNY------LEGVKFLDLFA 54
Query: 165 GTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
GTG+VGIEA+SRG S+V FVE D N++ NL + + + E ++
Sbjct: 55 GTGAVGIEALSRGASKVVFVENDRR-FCNLIRENL--CSLRVPPERYEIICGDYTEALKR 111
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
+ FD++ PPY Y ++ + L+ +D +++E P
Sbjct: 112 LAKRGEKFDFIYADPPYEKGYYTRIVNMVKNLGLLDEDGLLILEEP 157
>gi|421766281|ref|ZP_16203056.1| Ribosomal RNA small subunit methyltransferase D [Lactococcus
garvieae DCC43]
gi|407625288|gb|EKF51999.1| Ribosomal RNA small subunit methyltransferase D [Lactococcus
garvieae DCC43]
Length = 179
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 13/190 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VKGA F+++ GR LDL+SG+GS
Sbjct: 1 MRVVAGNYGGRPLKTLAGKTTRPTTDKVKGAIFNMIGP------YFDGGRVLDLFSGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG VE D V++ N++ T + +++ ERA
Sbjct: 55 LAIEAVSRGMDSAVMVEKD-RSAQMVILENIKMTK--ESEKFQLLKMPA--ERA--LTNI 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY + ++ + L+ +++ IV E ++ + G L K++
Sbjct: 108 TGQFDLVLLDPPYAKETIVANLEKMQEKNLLAEEAIIVCETDKEVELPEAIGQLSISKEK 167
Query: 289 RFGRTHLAIY 298
+G + + IY
Sbjct: 168 MYGISKVTIY 177
>gi|326803915|ref|YP_004321733.1| RNA methyltransferase, RsmD family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651432|gb|AEA01615.1| RNA methyltransferase, RsmD family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 186
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ L + G + RP + +K + F+I+ L G LD Y+G+G+
Sbjct: 1 MRIIAGEFGGIPLQAVPGSNTRPTTDKIKESMFNIIGQ------YLDGGIVLDFYAGSGA 54
Query: 169 VGIEAISRGCSEVH----FVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
+G+EA+SRG EV+ F + +V NV +LE L + + ++++ ++
Sbjct: 55 LGLEALSRGADEVYAFERFRKAQETIVKNVAKAHLEERYHL-LKGDNQKQLKSLRKKV-- 111
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
D FD++ + PPY E L+ Q + + +V E + ++ DT G L
Sbjct: 112 ---PDLQFDWVFLDPPYKGQHLEDLLLQFQEEGWLSDQVTVVCELDSQDNLPDTVGNLHA 168
Query: 285 IKDRRFGRTHLAIY 298
K+ +G T + Y
Sbjct: 169 FKNATYGHTRVVCY 182
>gi|291288906|ref|YP_003505722.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
gi|290886066|gb|ADD69766.1| methyltransferase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + ++L++PK +RP + K A F L + + LDL+ GTG+
Sbjct: 1 MKIISGSFKNRQLVTPKDSSIRPTTDKAKNAIFSSLFD------KVHGAKVLDLFCGTGA 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV-SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
G+EA+SRG S F+++ ++ N I + + +TV RAE V
Sbjct: 55 FGLEALSRGASHCTFIDIHTDLIKKNCQIAD---------NGTYTV----IKGRAEALVE 101
Query: 228 K-DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273
K G FD + + PPY ++ L+ +I + ++ + ++ E +RT
Sbjct: 102 KLRGEFDIIFIDPPYGDIEPLELIKKIKDNEILANEGILIYEESVRT 148
>gi|315221974|ref|ZP_07863885.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
gi|315188940|gb|EFU22644.1| RNA methyltransferase, RsmD family [Streptococcus anginosus F0211]
Length = 214
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++V+ GK + L + +G RP + VKGA F+++ GR LDLY+G+G
Sbjct: 35 FMRVVAGKYGGRPLKTLEGKTTRPTTDKVKGAIFNMI------GPYFDGGRVLDLYAGSG 88
Query: 168 SVGIEAISRGCSEVHFVEMD---PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ 224
S+ IEAISRG + VE D ++S +I E F +++E+ RA +
Sbjct: 89 SLAIEAISRGMASAVLVEKDRRAQTIISQNIIMTKEKERF------ELLKMES--NRALE 140
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
V G FD + + PPY + ++ + L+ D +V E D+ + L
Sbjct: 141 LV--TGQFDLVLLDPPYAKEQIAADIEKLVERELLSDDVLVVCETDKSVDLPEEIAGLGI 198
Query: 285 IKDRRFGRTHLAIY 298
K + +G + + +Y
Sbjct: 199 WKQKIYGISKVTVY 212
>gi|440780895|ref|ZP_20959366.1| methyltransferase [Clostridium pasteurianum DSM 525]
gi|440221483|gb|ELP60688.1| methyltransferase [Clostridium pasteurianum DSM 525]
Length = 106
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ +KLLSP+GM+ RP ++ +K + F I+Q+ + LD+++GTGS
Sbjct: 1 MRIIAGLAKGRKLLSPEGMETRPTLDRIKESIFSIIQN------DVPYATVLDVFAGTGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208
+G+EA+SRG + + ++ P + +L N+E F +V
Sbjct: 55 LGLEAVSRGAKQCYLIDKSP-ITFPLLKKNVENLKFQNVC 93
>gi|299134223|ref|ZP_07027416.1| methyltransferase [Afipia sp. 1NLS2]
gi|298590970|gb|EFI51172.1| methyltransferase [Afipia sp. 1NLS2]
Length = 185
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + + SP D+RP + ++ + F+IL A PA R LDL++GTG+
Sbjct: 1 MRVVGGRLRGRNIASPASKDIRPTQDRLRESIFNILMHAYENPAV--DARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + F++ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGATFTLFID-NGAEARALLRNNVEALGLGGVTKVYR-RDATQLGPAHPME-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E +A + + + +VVE
Sbjct: 115 --PFTLAFLDPPYGKGLAEKALASLRDGQWLVPGALVVVE 152
>gi|56551471|ref|YP_162310.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752917|ref|YP_003225810.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|56543045|gb|AAV89199.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552280|gb|ACV75226.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 183
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ GK R + L +P RP + + A F +L+S G SLR D+++GTG+
Sbjct: 1 MRIIAGKWRGRSLKTPNSDTTRPTSDRAREALFSMLESRMGSFESLRVA---DIFAGTGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+E++SRG + FVE DP +L N+E G + + V + ++
Sbjct: 58 LGLESLSRGAAFSLFVEQDP-EACKILKSNIEKMGAQADTRLMAQPVSSLAPISQ----- 111
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
PFD + PPY + L+ ++++ ++ +E + + G V +R
Sbjct: 112 --PFDLLLFDPPYNSGGAGALLEKLTRLGWASPSAWASIETAKQETT--SAGGWVVEAER 167
Query: 289 RFGRTHLAI 297
+G++ + +
Sbjct: 168 TYGKSRVTL 176
>gi|363891848|ref|ZP_09319023.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
gi|361964843|gb|EHL17849.1| RsmD family RNA methyltransferase [Eubacteriaceae bacterium CM2]
Length = 184
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK R KKLLSPK +RP + VK + F+++Q+ + ++LDL+SG+G+
Sbjct: 1 MRVISGKYRGKKLLSPKDDYIRPTTDRVKESMFNMIQNY------IYGSKFLDLFSGSGA 54
Query: 169 VGIEAISRGCSEVHFVE--MDPWVVSNVLIPNLEWTGFLDVSSIHTVR--VETFLERAEQ 224
+GIEA SR + VE D + N NL+ ++ +I V V FL+ + +
Sbjct: 55 IGIEAFSRDAKHITMVENAKDSLKLIN---ANLKSIN-VNKDNIELVNRDVIDFLKTSRE 110
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+D + PPY ++ +S + L+ +++E + L+ C +
Sbjct: 111 ------KYDIIFADPPYDYSKINEIIKTVSDNKLLSDKGILIIETE-KDFTLEGCSDFII 163
Query: 285 IKDRRFGRTHLAI 297
K++ + + L +
Sbjct: 164 EKEKIYSISKLTV 176
>gi|347534643|ref|YP_004841313.1| hypothetical protein LSA_09820 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504699|gb|AEN99381.1| hypothetical protein LSA_09820 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 190
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 16/194 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+++++ GK +K+ G RP + V+ + F+++ G +LDL++G+G
Sbjct: 6 VMRIISGKFGGRKISPVPGTKTRPTTDKVRESLFNMI------GPYFPEGSFLDLFAGSG 59
Query: 168 SVGIEAISRGCSEVHFVEMD-PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA-EQF 225
+V IEAISRG H V +D + + N+E T + SS ++++ E+A ++
Sbjct: 60 AVAIEAISRGMK--HAVLVDRQYAAFKTIKKNIEITN-EEQSSFKVLKMDA--EQALKKL 114
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGC-LVK 284
K FDY+ + PPY A +A+I K L+ ++ E +T++ L+K
Sbjct: 115 ASKGEKFDYIFLDPPYAAQQMIKQLAEIKKYNLLNSKGIVICETDNQTNLSQVSNYDLIK 174
Query: 285 IKDRRFGRTHLAIY 298
KD +G T + IY
Sbjct: 175 QKD--YGLTVITIY 186
>gi|29839903|ref|NP_829009.1| hypothetical protein CCA00135 [Chlamydophila caviae GPIC]
gi|29834250|gb|AAP04887.1| conserved hypothetical protein TIGR00095 [Chlamydophila caviae
GPIC]
Length = 189
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++L GK + K L VRP VVK A F+I C A + +LDL+SG GS
Sbjct: 1 MKILAGKYKGKSLKIFSNPSVRPTCGVVKEAVFNI------CAAYIEDATFLDLFSGVGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVV------SNVLIPNLEWTGFLDVSSIHTVRVETFLERA 222
VG EA+SRG S V FV+ V S +L P+L T I + ++R
Sbjct: 55 VGFEALSRGASSVTFVDSSAQSVRLIRANSQLLHPDLPVT-------IMKQEARSAIQRL 107
Query: 223 EQFVGKDGPFDYMSVTPPYTAVD--YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCG 280
+ K FD + + PPY + +++ I ++ K+ + +E +L G
Sbjct: 108 TK---KGMSFDLIYIDPPYNLENRYLAAVLSDIVFGKILDKEGLLFLENASVEPIL-VEG 163
Query: 281 CLVKIKDRRFGRTHLAIYGPD 301
++K + R+ G T L+ Y D
Sbjct: 164 LVLK-RRRKLGGTFLSEYILD 183
>gi|300781317|ref|ZP_07091171.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
gi|300533024|gb|EFK54085.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
33030]
Length = 195
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 110 QVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+++ G+AR +K+ + P+G RP + K F LQ G R LDL+SG+G+
Sbjct: 3 RIISGEARGRKIKVPPEG--TRPTSDRAKEGLFSSLQVRFGFVGK----RVLDLFSGSGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA SRG EV VE DP V ++ N + G +V I V+ ++ RA +
Sbjct: 57 LGLEAASRGADEVVLVESDPKAV-EIIKHNAQAVGHPNV-HIEPVKASAYVPRAPRAY-- 112
Query: 229 DGPFDYMSVTPPYTAVDYEV-LMAQISKSALVGKDSFIVVEYPLRTDMLDTC------GC 281
FD + PPY D +V M + K AL+ + ++ + D +T
Sbjct: 113 ---FDMVLADPPYDLPDEDVAAMLEALKPALIDGAAVVIERH---RDSAETAWPEGYTPT 166
Query: 282 LVKIKDRRFG--RTHLAIYG 299
K+K R +G R +A+YG
Sbjct: 167 GQKLKKRLYGIARMDMAVYG 186
>gi|302522132|ref|ZP_07274474.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
gi|318056543|ref|ZP_07975266.1| hypothetical protein SSA3_01277 [Streptomyces sp. SA3_actG]
gi|318076717|ref|ZP_07984049.1| hypothetical protein SSA3_08332 [Streptomyces sp. SA3_actF]
gi|302431027|gb|EFL02843.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
Length = 195
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +V+ G A ++L P G RP E + F ++ G P L R LDLY G+G
Sbjct: 1 MTRVIAGTAGGRRLAVPPGTGTRPTSERAREGLFSTWEALLGGP--LDGERVLDLYGGSG 58
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA+SRG + VE D V + +V + E +A Q V
Sbjct: 59 AVGLEALSRGAAHALLVESDARAVRTIRA---------NVRDLGLTGAEVRPGKAAQIVA 109
Query: 228 K---DGPFDYMSVTPPYTAVDYEV--LMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCL 282
P+D + + PPY D E+ ++ + + ++ + VE R
Sbjct: 110 GPPPSAPYDLVFLDPPYAVSDAELGEILITLRTRGWLADEALVTVERSTRGGEFGWPDGF 169
Query: 283 VKIKDRRFG 291
++ RR+G
Sbjct: 170 GALRSRRYG 178
>gi|152965339|ref|YP_001361123.1| methyltransferase [Kineococcus radiotolerans SRS30216]
gi|151359856|gb|ABS02859.1| putative methyltransferase [Kineococcus radiotolerans SRS30216]
Length = 185
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGT 166
+ +++ G+A ++L P G RP + V+ A F L +AG G W LDLY+G+
Sbjct: 1 MTRIISGRAGGRRLKVPPGETTRPTSDRVREALFSALDAAGALE-----GAWVLDLYAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA SRG V VE + N E G V + RVE F+ A V
Sbjct: 56 GALGLEAASRGAVRVVLVEAAR-PAARTARANAEAVGLPGVRVVPE-RVERFVASAAAAV 113
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
+G +D + V PPY EV L+ + +VVE RT ++
Sbjct: 114 --EGGWDLVLVDPPYAVAPEEVDALLADLVPLLAPGATVVVERSSRTAAPRWPEGFTDVR 171
Query: 287 DRRFGRTHL 295
+RR+G T +
Sbjct: 172 ERRYGETSV 180
>gi|384146946|ref|YP_005529762.1| methyltransferase [Amycolatopsis mediterranei S699]
gi|340525100|gb|AEK40305.1| methyltransferase [Amycolatopsis mediterranei S699]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++ G A ++L + PKG RP E V+ A F+ L +AG L R LDLY+G+
Sbjct: 1 MTRIVAGTAGGRRLKVPPKG--TRPTSERVREALFNALGTAG----ELDGARVLDLYAGS 54
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG ++ FVE D V VL N+ G ++ +VE +
Sbjct: 55 GALGLEALSRGAADALFVESDRRAV-EVLRGNVAALGL--GGTVRAGQVEAVVAAPAPA- 110
Query: 227 GKDGPFDYMSVTPPYTAVDYEVL---MAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
FD + PPY AVD L +A ++ +G + +V+E R D
Sbjct: 111 ----SFDLVLADPPY-AVDAAALGSVLAALAAGGWLGSSALVVIERAARDGEPDWPPGFE 165
Query: 284 KIKDRRFGRTHL 295
+ + +++G T +
Sbjct: 166 QARAKKYGDTAV 177
>gi|148253232|ref|YP_001237817.1| methyltransferase [Bradyrhizobium sp. BTAi1]
gi|146405405|gb|ABQ33911.1| Putative methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 184
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ + + + SP D+RP + ++ A F+IL A P + R LDL++GTG+
Sbjct: 1 MRVVGGRLKGRNIASPASRDIRPTQDRLREALFNILVHAYDDP--IDGARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG + FV+ + +L N+E G V+ ++ R T L A
Sbjct: 59 LGIEAVSRGAAFTLFVD-NGAEARALLRNNVEALGLGGVTKVYR-RDATNLGPAYPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + + PPY E +A + + + +VVE
Sbjct: 115 --PFSLVFLDPPYGKGLAETALASLRDGGWLVPSALLVVE 152
>gi|417910742|ref|ZP_12554458.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|418622142|ref|ZP_13184898.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|420187646|ref|ZP_14693666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|420210969|ref|ZP_14716358.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
gi|341654930|gb|EGS78666.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU105]
gi|374827517|gb|EHR91379.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
VCU123]
gi|394256088|gb|EJE01024.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM039]
gi|394282906|gb|EJE27088.1| RNA methyltransferase, RsmD family [Staphylococcus epidermidis
NIHLM001]
Length = 180
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + K L S +G + RP M+ VK F+ L G LDL++G+G+
Sbjct: 1 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGL--------GLDLFAGSGA 52
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SRG ++ FV+ + V V+ NL + + ++ + L + +
Sbjct: 53 LGIEALSRGMDKMIFVDQNFKAVK-VIKANLNQLDLMSQAEVYKNNADRAL---KALAKR 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
+ F+ + + PPY +++I++ L+ ++ IV E+ ++ T IK
Sbjct: 109 EIQFNVIFLDPPYNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEI--TIAPFQMIKRY 166
Query: 289 RFGRT 293
+G T
Sbjct: 167 HYGLT 171
>gi|254796588|ref|YP_003081424.1| methyltransferase [Neorickettsia risticii str. Illinois]
gi|254589816|gb|ACT69178.1| putative methyltransferase [Neorickettsia risticii str. Illinois]
Length = 198
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ GK + +K+ KG+++RP M V+ A F+I+ A +LDL++GTGS
Sbjct: 1 MRVISGKYKERKIGLIKGVEIRPTMGKVREALFNIILHARFVTKLPEEIHFLDLFTGTGS 60
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
V IEA+SRG + V +++D + + NLE D ++ V E +Q
Sbjct: 61 VSIEALSRGFASVTAIDID----TRCIYANLEKMAIHDEITVIGRDVVKLEESGKQ---- 112
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVG 260
+D + + PPY + +QI++ + G
Sbjct: 113 ---YDVVFMDPPYNEKTPKYRASQITEKSFTG 141
>gi|345886302|ref|ZP_08837560.1| RsmD family RNA methyltransferase [Bilophila sp. 4_1_30]
gi|345038620|gb|EGW43021.1| RsmD family RNA methyltransferase [Bilophila sp. 4_1_30]
Length = 188
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP V+ A F +L S G + LR LDL++G+GS
Sbjct: 1 MRIIAGALGGRNLKTVEGPGYRPATAKVREAIFSMLSSRGVVWSGLRV---LDLFAGSGS 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE-RAEQFVG 227
+ EA+SRG EV VE +P VV L N+E D + V FL RA Q
Sbjct: 58 LSFEALSRGAQEVCLVEREPKVV-QCLNQNVEALDVSDRCRVAESDVLRFLRGRAYQ--- 113
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP--LRTDMLDTCGCLVKI 285
P+D + PPY + I K + D +++ E LR D L
Sbjct: 114 ---PYDVIFADPPYGENRLVPTLKVIMKGGWLAPDGYLLAEIEGLLRFDAAAVHEELELE 170
Query: 286 KDRRFGRTHLAIY 298
DR +G+T + ++
Sbjct: 171 IDRNYGQTRIILW 183
>gi|192289767|ref|YP_001990372.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
gi|192283516|gb|ACE99896.1| methyltransferase [Rhodopseudomonas palustris TIE-1]
Length = 188
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 1 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G VS ++ R L A
Sbjct: 59 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVYR-RDAANLGPAHPVE-- 114
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E +A + + + ++VE
Sbjct: 115 --PFGVAFLDPPYRKQLAEASLASLRDGGWLLPGALVIVE 152
>gi|445064228|ref|ZP_21376315.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
gi|444504404|gb|ELV05079.1| N6-adenine-specific methylase [Brachyspira hampsonii 30599]
Length = 187
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
+ ++ G + +K+++PK D RP VK A F+I+ + +LDL SG+G+
Sbjct: 1 MHIISGNKKGRKIITPK-RDFRPTQGKVKEAFFNIID--------IENKTFLDLCSGSGA 51
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G EA+SR V F+E+D V N+ N + T F + +++ ++ + AE +V K
Sbjct: 52 MGFEALSRNAGFVTFIEIDREAVKNIF-SNAK-TIFNNDENVYKIKRVS----AEDYVKK 105
Query: 229 -DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL--------RTDMLDTC 279
+ FD + + PPY + Y ++ I K ++ + + E+ D +
Sbjct: 106 TNDKFDVIYLDPPYHSKIYFDVINNIIKRNILNDNGVLAAEFGADYYKKFLDNEDFKNIV 165
Query: 280 GCLVKIKDRRFGRTHLAIY 298
++K + +G + L I+
Sbjct: 166 SNIMKYNIKTYGESVLIIF 184
>gi|339443351|ref|YP_004709356.1| N6-adenine-specific methylase [Clostridium sp. SY8519]
gi|338902752|dbj|BAK48254.1| N6-adenine-specific methylase [Clostridium sp. SY8519]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 25/174 (14%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G AR L S G D RP + +K F+++Q+ P S+ LDL++G+GS
Sbjct: 1 MRIIAGTARSLPLKSLPGSDTRPTTDRIKETLFNMIQTR--VPGSV----VLDLFAGSGS 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-QFVG 227
+ +EA+SRG + VE + + V+ N+ +T F ++ + T L E ++V
Sbjct: 55 LALEAVSRGAEKAVLVE-NSRKAAAVIQENINFTKFQSRCNLLVMDALTALPTMERRYV- 112
Query: 228 KDGPFDYMSVTPPY------TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275
FD + + PPY A+DY +++S+ + +++ I+VE + TD+
Sbjct: 113 ----FDLVFLDPPYGKELEIQALDY------LARSSAITEETLIIVETSMDTDI 156
>gi|374997134|ref|YP_004972633.1| RsmD family RNA methyltransferase [Desulfosporosinus orientis DSM
765]
gi|357215500|gb|AET70118.1| RNA methyltransferase, RsmD family [Desulfosporosinus orientis DSM
765]
Length = 184
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R ++L + +G+ RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGDLRGRQLKAVEGIHTRPTSDKVKGAIFNVLGE------KVLNSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG SE VE + + + NLE G S + L A +F+ K
Sbjct: 55 LAIEALSRGSSEAVLVEKN-FAAYQTIKKNLEVLGVCQKSKL-------LLMDAFKFIHK 106
Query: 229 --DGPFDYMSVTPPY 241
D FD + + PPY
Sbjct: 107 NPDKVFDLIFLDPPY 121
>gi|424915334|ref|ZP_18338698.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392851510|gb|EJB04031.1| RNA methyltransferase, RsmD family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|418977270|ref|ZP_13525098.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK575]
gi|383350144|gb|EID28039.1| RNA methyltransferase, RsmD family [Streptococcus mitis SK575]
Length = 179
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G + L + +G RP + V+GA F+++ GR LDLY+G+G
Sbjct: 1 MKIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMI------GPYFEGGRVLDLYAGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG S VE D ++ N+ T +V ++++ ERA + V
Sbjct: 55 LSIEAVSRGMSSAVLVERDRK-AQTIVAENIRMTK--EVGKFQLLKMDA--ERALEQV-- 107
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSA---LVGKDSFIVVEYPLRTDMLDTCGCLVKI 285
G FD + + PPY E ++A I K A L +D +V E ++ + CL
Sbjct: 108 SGEFDLIFLDPPYAK---EQIVADIEKMAERELFSEDIMVVCETDKAVELPEEIACLGIW 164
Query: 286 KDRRFGRTHLAIY 298
K++ +G + + +Y
Sbjct: 165 KEKIYGISKVTVY 177
>gi|39934241|ref|NP_946517.1| N-6 adenine-specific DNA methylase [Rhodopseudomonas palustris
CGA009]
gi|39648089|emb|CAE26609.1| N-6 Adenine-specific DNA methylase:Conserved hypothetical protein
95 [Rhodopseudomonas palustris CGA009]
Length = 193
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+GG+ R + L++P D+RP + ++ + F+IL A P + R LDL++GTG+
Sbjct: 6 MRVIGGRLRGRNLVAPSSRDIRPTADRLRESVFNILMHAYENP--ILDARVLDLFAGTGA 63
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA SRG V FV+ + +L N+E G VS ++ R L A
Sbjct: 64 LGIEASSRGAKFVLFVD-NGAEARALLRANVETLGLGGVSKVYR-RDAANLGPAHPVE-- 119
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
PF + PPY E +A + + + ++VE
Sbjct: 120 --PFGVAFLDPPYRKQLAEASLASLRDGGWLLPGALVIVE 157
>gi|411116475|ref|ZP_11388962.1| RNA methyltransferase, RsmD family [Oscillatoriales cyanobacterium
JSC-12]
gi|410712578|gb|EKQ70079.1| RNA methyltransferase, RsmD family [Oscillatoriales cyanobacterium
JSC-12]
Length = 182
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA-GGCPASLRPGRWLDLYSGTG 167
L++ G +A L + G D RP + V+ A F+I Q GC RWLDL +GTG
Sbjct: 3 LRIYGNRA----LKTLPGRDTRPTLARVREAVFNIWQGKIEGC-------RWLDLCAGTG 51
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
S+G EA+ RG + VE + + W V ++R G
Sbjct: 52 SMGAEALCRGAAIAIAVEKSSRACAVI---QQNWQQVARTDQTFQVLRGDVVKRLPTLAG 108
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY-PLRTDMLDTCGCLVKIK 286
+ FD + PPY Y+ ++ +I+ AL+ D + VE+ P RTD++ T L +
Sbjct: 109 Q--TFDRIYFDPPYAEDLYQPVLDEIASYALLASDGELAVEHSPDRTDII-TPPSLEICR 165
Query: 287 DRRFGRTHLAIY 298
+ +G + L +
Sbjct: 166 QKAYGNSALTFF 177
>gi|389573384|ref|ZP_10163459.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
sp. M 2-6]
gi|388427081|gb|EIL84891.1| site-specific DNA-methyltransferase (adenine-specific) [Bacillus
sp. M 2-6]
Length = 185
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRW-LDLYSGTG 167
++V+ G + + L + G RP + VK + F+++ G W LDL++G+G
Sbjct: 1 MRVISGTKKGRTLKAVPGQSTRPTTDKVKESIFNMI-------GPYFDGGWALDLFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+GIEA+SRG FV+ D + + NL +D S + L V
Sbjct: 54 GLGIEALSRGFDHCIFVDRDMKAIQTIK-GNLNQLSLMDQSEVFRNDANRALAAV---VK 109
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD 287
++ F + + PPY + L+ I + +L+ D IV E+ + + G L +
Sbjct: 110 REESFQAIFLDPPYKDQKLKALLDTIDEHSLLADDGVIVCEHDKDVTLPEEAGQLHISRQ 169
Query: 288 RRFGRTHLAIY 298
+G T + IY
Sbjct: 170 EMYGMTGITIY 180
>gi|209548085|ref|YP_002280002.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533841|gb|ACI53776.1| methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 186
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R + L PK ++RP + + + F+IL A P + R LDL++GTG+
Sbjct: 1 MRIVGGEFRGRPLAVPKSNEIRPTADRTRESLFNILSHA--YPECVDGTRILDLFAGTGA 58
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQF--V 226
VG+EA+SRGC FVE ++V L W +D +H R A V
Sbjct: 59 VGLEAVSRGCRHALFVE------NSVEGRALLWEN-IDALGLHG-RTRILRRDATDLGSV 110
Query: 227 GKDGPFDYMSVTPPY 241
G FD + PPY
Sbjct: 111 GNLEAFDVLFADPPY 125
>gi|225180918|ref|ZP_03734366.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
gi|225168399|gb|EEG77202.1| methyltransferase [Dethiobacter alkaliphilus AHT 1]
Length = 198
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G AR + L + KGMD RP + VK + F+IL L LD+++G G
Sbjct: 1 MRVIAGCARGRTLKTRKGMDTRPTADRVKESLFNILTP------YLSGAEMLDVFAGNGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI---HTVRVETFLERAEQF 225
VGIEA+SRG FVE + + ++ NL TG D I + + L++ E
Sbjct: 55 VGIEALSRGADRCVFVEKNAQ-CAKIIKDNLILTGLADRGEILPRDALGALSLLQKREN- 112
Query: 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269
F+ + + PPY + + ++ +I++ L+ D ++VE+
Sbjct: 113 -----RFNIIFLDPPYHSPELADVLRKIAQGCLLLPDGLLLVEH 151
>gi|404253674|ref|ZP_10957642.1| methyltransferase [Sphingomonas sp. PAMC 26621]
Length = 178
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R + L++PKG RP + V+ A F +L S G L DL++G+G+
Sbjct: 1 MRIIAGEWRGRPLVAPKGDATRPTADRVREALFSMLSSRLGSFEDLSVA---DLFAGSGA 57
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFV 226
+G+EA+SRG + FVE D P L+ T +S+ VR ++ +
Sbjct: 58 LGLEALSRGAASCIFVEQDK--------PALDALRTNIAKLSAKADVRAQSVMALGHAV- 108
Query: 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIK 286
P D + + PPY + V + ++++ VG ++I +E + D ++ G V+
Sbjct: 109 ---APLDLILMDPPYDSNAGAVALDKLARLGWVGDATWISIETA-KPDRVEVAG-FVEDV 163
Query: 287 DRRFGRTHLAI 297
R G+ L +
Sbjct: 164 TRVHGKARLTL 174
>gi|342214802|ref|ZP_08707475.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
gi|341590625|gb|EGS33862.1| RNA methyltransferase, RsmD family [Veillonella sp. oral taxon 780
str. F0422]
Length = 181
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G A+ + +PKGMD RP + V+ + +++QS G + LDL+SGTG+
Sbjct: 1 MRIISGTAKGHTIQAPKGMDTRPTQDRVRESICNVIQSRRG----FFEAQVLDLFSGTGA 56
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IE++SRG S H + +D V + + N D I +E+ L R + GK
Sbjct: 57 LAIESLSRGAS--HAIAVDTRTV-DCIQSNSRHCKVDDRLEIMKCTMESALTRLQ---GK 110
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
F + PPY + + + + L+ +D F+++E + + L+ V +K
Sbjct: 111 Q--FQLIFSDPPYEKGYVQKTLDLVDELQLLTEDGFLIIERH-KNETLELLPKWVVVKAL 167
Query: 289 RFGRTHLAI 297
FG T + I
Sbjct: 168 SFGYTRVDI 176
>gi|399024597|ref|ZP_10726632.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
gi|398080207|gb|EJL71029.1| N6-adenine-specific methylase [Chryseobacterium sp. CF314]
Length = 192
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
+ +++ GK + KK+ +PK DVRP + K A F IL++ ++ LDL++G G
Sbjct: 1 MYRIISGKWKAKKIAAPKNFDVRPTTDFAKEALFSILENT----YDMQSISVLDLFAGIG 56
Query: 168 SVGIEAISRGCSEVHFVEMDP 188
S+ E SRGC +V VEM+P
Sbjct: 57 SISFEFASRGCKDVTSVEMNP 77
>gi|319788722|ref|YP_004090037.1| methyltransferase [Ruminococcus albus 7]
gi|315450589|gb|ADU24151.1| methyltransferase [Ruminococcus albus 7]
Length = 182
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 15/190 (7%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G R KKL + +D RP ++VK A F +Q P S + LDL++G+G
Sbjct: 1 MRVITGSRRGKKLKTLDTLDTRPTTDMVKEAVFSAIQF--DVPGS----QVLDLFAGSGQ 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+GIEA+SR S FV+ +P V V+ N+ F S + + +++ A+
Sbjct: 55 MGIEALSREASHCVFVDNNPAAV-QVIKENISDCKFNTESRVLNMDSLDYIKVAK----- 108
Query: 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDR 288
G FD + + PPY E ++ I + + +V E+ + D G L K
Sbjct: 109 -GQFDIVLLDPPYGKGIIEKVLGSIDSH--LSDRAIVVCEHEKELQLGDEYGRLKMHKRY 165
Query: 289 RFGRTHLAIY 298
++G+ + I+
Sbjct: 166 KYGKIAVTIF 175
>gi|312873984|ref|ZP_07734020.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2052A-d]
gi|325911478|ref|ZP_08173889.1| RNA methyltransferase, RsmD family [Lactobacillus iners UPII 143-D]
gi|311090533|gb|EFQ48941.1| RNA methyltransferase, RsmD family [Lactobacillus iners LEAF
2052A-d]
gi|325476678|gb|EGC79833.1| RNA methyltransferase, RsmD family [Lactobacillus iners UPII 143-D]
Length = 182
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDIL-QSAGGCPASLRPGRWLDLYSGTG 167
++++ GK R+ L + K RP + VK + F+ + Q G GR LDLY+G+G
Sbjct: 1 MRIISGKYARRNLFTLKSNSTRPTSDKVKESLFNAMGQFFSG-------GRVLDLYAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF----LERAE 223
++G+EA+SRG FV+++ + ++ N+ T R E F L
Sbjct: 54 ALGLEAVSRGYDSAVFVDIN-YAACEIIKKNILLTK-------EKERFEIFKNSDLRAIS 105
Query: 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLV 283
++ FD + + PPY +M + + ++ + + IV E ++ D G +
Sbjct: 106 ILASRNYHFDLVFLDPPYAKEKIIKVMKIMLDANILNEKALIVAETDENVELPDVEGYSL 165
Query: 284 KIKDRRFGRTHLAIY 298
I GRT IY
Sbjct: 166 -INSHHLGRTKFKIY 179
>gi|402298441|ref|ZP_10818133.1| methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726350|gb|EJS99584.1| methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 185
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++V+ G + L + G RP + VK A F+I+ G LDLY G+G
Sbjct: 1 MRVISGTKKGITLKAVPGQSTRPTTDKVKEAIFNII------GPYFNGGIGLDLYGGSGG 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA----EQ 224
+ IEA+SRG ++ V+ D ++ + NLE L+ + ET+ A +
Sbjct: 55 LSIEALSRGLEKMIIVDQDKKAIATIK-ANLERCQLLE-------QTETYRNDAGRALKA 106
Query: 225 FVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVK 284
+ ++ F + + PPY +A IS L+ D IVVE+ + + G L
Sbjct: 107 LIKRELRFQLIFLDPPYAKEKIASEIAIISDFRLLADDGLIVVEHGKDHPLQERIGNLSV 166
Query: 285 IKDRRFGRTHLAIY 298
++ +G T + IY
Sbjct: 167 LRQETYGDTRITIY 180
>gi|374582926|ref|ZP_09656020.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
gi|374419008|gb|EHQ91443.1| RNA methyltransferase, RsmD family [Desulfosporosinus youngiae DSM
17734]
Length = 183
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G+ R ++L + +GM RP + VKGA F++L + R LDL++GTG+
Sbjct: 1 MRIIAGEMRGRQLKAVEGMHTRPTSDKVKGAIFNVLGD------KVLDSRVLDLFAGTGN 54
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+ IEA+SRG E VE V+ NL+ G S + FL A Q++ +
Sbjct: 55 LAIEALSRGSCEAVLVEKSHNAFQ-VIQKNLQQLGVNQKSRL-------FLMDAFQYIHR 106
Query: 229 --DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
+ FD + + PPY + ++ + + + + D IV E
Sbjct: 107 YPNEVFDLIFLDPPYRQELIQKVLQTLKEYSYLTPDGVIVAE 148
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,106,490,599
Number of Sequences: 23463169
Number of extensions: 218250213
Number of successful extensions: 576686
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 2263
Number of HSP's that attempted gapping in prelim test: 571357
Number of HSP's gapped (non-prelim): 3765
length of query: 317
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 175
effective length of database: 9,027,425,369
effective search space: 1579799439575
effective search space used: 1579799439575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)