BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021116
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FHP|A Chain A, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
pdb|2FHP|B Chain B, Crystal Structure Of Putative Methylase From Enterococcus
Faecalis
Length = 187
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 110 QVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169
+V+ G+ ++L + G + RP + VK + F+ + G LDLYSG+G +
Sbjct: 5 RVISGEYGGRRLKALDGDNTRPTTDKVKESIFNXI------GPYFDGGXALDLYSGSGGL 58
Query: 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229
IEA+SRG + +E + + V+ N+ T + + LE QF +
Sbjct: 59 AIEAVSRGXDKSICIEKN-FAALKVIKENIAITKEPEKFEVRKXDANRALE---QFYEEK 114
Query: 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRR 289
FD + + PPY + + + + L+ ++ IV E + +T G L K ++
Sbjct: 115 LQFDLVLLDPPYAKQEIVSQLEKXLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRETV 174
Query: 290 FGRTHLAIY 298
+G T + IY
Sbjct: 175 YGITQVTIY 183
>pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical
Protein Ttha0928
Length = 171
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG 167
++++LGGKAR L P RP ++ A FD L+ P R GR+LD ++G+G
Sbjct: 1 VVRILGGKARGVALKVPA--SARPSPVRLRKALFDYLRLR--YP---RRGRFLDPFAGSG 53
Query: 168 SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227
+VG+EA S G V VE DP V +L N+ TG + + + VE FL A+
Sbjct: 54 AVGLEAASEGWEAV-LVEKDPEAV-RLLKENVRRTGL--GARVVALPVEVFLPEAK---A 106
Query: 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270
+ F PPY A D L ++ S LV V+++P
Sbjct: 107 QGERFTVAFXAPPY-AXDLAALFGELLASGLVEAGGLYVLQHP 148
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 108 LLQVLGGKARRKKL-LSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT 166
+ +++GG A +++ + P+G RP + V+ + F+I+ + L LDLY+G+
Sbjct: 2 MTRIIGGVAGGRRIAVPPRG--TRPTTDRVRESLFNIVTAR----RDLTGLAVLDLYAGS 55
Query: 167 GSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV 226
G++G+EA+SRG + V FVE D + V+ N+E G S T+R A
Sbjct: 56 GALGLEALSRGAASVLFVESDQRSAA-VIARNIEALGL----SGATLR--RGAVAAVVAA 108
Query: 227 GKDGPFDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVE 268
G P D + PPY + D + ++A + + + + VVE
Sbjct: 109 GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE 152
>pdb|2FPO|A Chain A, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|B Chain B, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|C Chain C, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|D Chain D, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|E Chain E, Putative Methyltransferase Yhhf From Escherichia Coli.
pdb|2FPO|F Chain F, Putative Methyltransferase Yhhf From Escherichia Coli
Length = 202
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++GG+ R +KL P +RP + V+ F+ L + + LD ++G+G+
Sbjct: 14 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDAQCLDCFAGSGA 67
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228
+G+EA+SR + +E D VS LI NL +++ A F+ +
Sbjct: 68 LGLEALSRYAAGATLIEXDR-AVSQQLIKNL--------ATLKAGNARVVNSNAXSFLAQ 118
Query: 229 DG-PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
G P + + V PP+ E + + + + ++ I VE
Sbjct: 119 KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 159
>pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102.
pdb|2IFT|B Chain B, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102
Length = 201
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGS 168
++++ G R +KL +RP + VK F+ L + LD ++G+GS
Sbjct: 13 VRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLX------PYIHQSECLDGFAGSGS 66
Query: 169 VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG- 227
+G EA+SR +V F+E+D V+N L NL+ L SS + E + + F+
Sbjct: 67 LGFEALSRQAKKVTFLELDK-TVANQLKKNLQ---TLKCSS---EQAEVINQSSLDFLKQ 119
Query: 228 -KDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268
++ P FD + + PP+ E ++ + ++ + ++ I VE
Sbjct: 120 PQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE 162
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 21/177 (11%)
Query: 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVE 185
G RP + V+GA F+ + GR LDL++G+G + IEA+SRG S VE
Sbjct: 8 GKITRPTSDKVRGAIFNXIGP------YFNGGRVLDLFAGSGGLAIEAVSRGXSAAVLVE 61
Query: 186 MD----PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241
+ + N++ E + ++ E ERA + G FD + + PPY
Sbjct: 62 KNRKAQAIIQDNIIXTKAE-------NRFTLLKXEA--ERAIDCL--TGRFDLVFLDPPY 110
Query: 242 TAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIY 298
+ ++ L+ + +V E + L K++ +G + + +Y
Sbjct: 111 AKETIVATIEALAAKNLLSEQVXVVCETDKTVLLPKEIATLGIWKEKIYGISKVTVY 167
>pdb|1FSK|C Chain C, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|F Chain F, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|I Chain I, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|L Chain L, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 220
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY---TAVDYEVLMAQISK 255
LEW G + S +T + F ++A V K YM V P +AV Y A+ +
Sbjct: 45 LEWVGNIFPSDSYTNYNQKFKDKATLTVDKSSSTAYMQVNSPTSEDSAVYYCTRGARDTW 104
Query: 256 SALVGKDSFIVVE---------YPL------RTDMLDTCGCLVK 284
A G+ + + V +PL +T+ + T GCLVK
Sbjct: 105 FAYWGQGTLVTVSVAKTTPPSVFPLAPGSAAQTNSMVTLGCLVK 148
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 89 GSKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPK---GMDVRPMMEVVKGAAFD 142
G++ + DE E LL V G A R +L+ K G D RP + V KG FD
Sbjct: 211 GAEAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWNGGGDARPYVLVGKGITFD 267
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 271 LRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQKKRKSEKKIPIVT 317
L+ +++T G + K++ F + +A +G WA + +E K+ IVT
Sbjct: 95 LKAALIETFGSVENFKEQ-FSKAAIATFGSGWAWLVKNTEGKLEIVT 140
>pdb|3S62|H Chain H, Structure Of Fab Fragment Of Malaria Transmission Blocking
Antibody 2a8 Against P. Vivax P25 Protein
Length = 216
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Query: 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM---SVTPPYTAVDYEVLMAQISK 255
LEW G + S T E F +A V K YM S+T +AV Y A +
Sbjct: 45 LEWIGMIHPHSGSTNYNEKFKSKATLTVDKSSSTAYMQLSSLTSEDSAVYYCARGADV-- 102
Query: 256 SALVGKDSFIVVE---------YPL------RTDMLDTCGCLVK 284
A G+ + + V YPL +T+ + T GCLVK
Sbjct: 103 -AYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK 145
>pdb|1YUH|H Chain H, Fab Fragment
pdb|1YUH|B Chain B, Fab Fragment
Length = 218
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM---SVTPPYTAVDYEVLMAQISK 255
LEW G +D +++ T E F +A V K YM S+T +AV Y A
Sbjct: 45 LEWIGRIDPNNVVTKFNEKFKSKATLTVDKPSSTAYMELSSLTSEDSAVYYCARYAYCRP 104
Query: 256 SALVGKDSFIVVE---------YPL------RTDMLDTCGCLVK 284
G+ + + V YPL +T+ + T GCLVK
Sbjct: 105 MDYWGQGTTVTVSSAATTPPSVYPLAPGSAAQTNSMVTLGCLVK 148
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR--- 214
R L+ +S TG + A+ GCS+V V+ + ++ N+E LD+S VR
Sbjct: 223 RVLNCFSYTGGFAVSALXGGCSQVVSVDTSQEAL-DIARQNVELNK-LDLSKAEFVRDDV 280
Query: 215 ---VETFLERAEQF 225
+ T+ +R E+F
Sbjct: 281 FKLLRTYRDRGEKF 294
>pdb|4HJY|A Chain A, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJY|B Chain B, 2.4 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|A Chain A, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
pdb|4HJZ|B Chain B, 1.9 A Crystal Structure Of E. Coli Mlte-E64q With Bound
Chitopentaose
Length = 206
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 142 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 194
>pdb|3T36|A Chain A, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|B Chain B, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|C Chain C, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|D Chain D, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|3T36|E Chain E, Crystal Structure Of Lytic Transglycosylase Mlte From
Eschericha Coli
pdb|4HJV|A Chain A, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|B Chain B, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|C Chain C, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|D Chain D, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
pdb|4HJV|E Chain E, Crystal Structure Of E. Coli Mlte With Bound Bulgecin And
Murodipeptide
Length = 203
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 139 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 191
>pdb|2Y8P|A Chain A, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
pdb|2Y8P|B Chain B, Crystal Structure Of An Outer Membrane-Anchored Endolytic
Peptidoglycan Lytic Transglycosylase (Mlte) From
Escherichia Coli
Length = 194
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 11/54 (20%)
Query: 40 RYPLIVFSYKSGTG-----LTSEDKKELLKRYGLDPDEFL-----SEPSPKTRR 83
+Y L+V SY +G G +S+ KK + K LD DEFL + P+P+ R
Sbjct: 122 QYALVV-SYANGAGALLRTFSSDRKKAISKINDLDADEFLEHVARNHPAPQAPR 174
>pdb|1LAF|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-binding
Protein
pdb|1LAG|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|1LAH|E Chain E, Structural Bases For Multiple Ligand Specificity Of The
Periplasmic Lysine-, Arginine-, Ornithine-Binding
Protein
pdb|2LAO|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 238
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 90 SKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA 147
S L ++D++ QE + +L A +L++ KG ++P +E +KG +LQ +
Sbjct: 69 SSLSITDKRQQEIAFSDKLY------AADSRLIAAKGSPIQPTLESLKGKHVGVLQGS 120
>pdb|1OPO|A Chain A, The Structure Of Carnation Mottle Virus
pdb|1OPO|B Chain B, The Structure Of Carnation Mottle Virus
pdb|1OPO|C Chain C, The Structure Of Carnation Mottle Virus
Length = 348
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGR 292
D S TPP T V + L + +A KD I V+ R + D+ K+ D FGR
Sbjct: 157 DDASDTPPTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRF-IRDSASDDAKLVD--FGR 213
Query: 293 THLAIYGPDWA 303
L+ YG D A
Sbjct: 214 IVLSTYGFDKA 224
>pdb|1LST|A Chain A, Three-Dimensional Structures Of The Periplasmic Lysine-,
Arginine-, Ornithine-Binding Protein With And Without A
Ligand
Length = 239
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 90 SKLVVSDEKSQEERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSA 147
S L ++D++ QE + +L A +L++ KG ++P +E +KG +LQ +
Sbjct: 69 SSLSITDKRQQEIAFSDKLY------AADSRLIAAKGSPIQPTLESLKGKHVGVLQGS 120
>pdb|3CVH|H Chain H, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
pdb|3CVH|Q Chain Q, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
pdb|3CVI|H Chain H, How Tcr-Like Antibody Recognizes Mhc-Bound Peptide
Length = 219
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM---SVTPPYTAVDY---EVLMA 251
+LEW G ++ ++ T+ + F +A V K YM S+T TAV Y +
Sbjct: 43 SLEWIGDINPNNGGTIYNQKFKGKATLTVDKSSSAAYMEVRSLTSEDTAVYYCARKPYYG 102
Query: 252 QISKSALVGKDSFIVVE---------YPL------RTDMLDTCGCLVK 284
+ A G+ + + V YPL +T+ + T GCLVK
Sbjct: 103 NFAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK 150
>pdb|1YQY|A Chain A, Structure Of B. Anthrax Lethal Factor In Complex With A
Hydroxamate Inhibitor
Length = 523
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 55 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 105
>pdb|4DV8|A Chain A, Anthrax Lethal Factor Metalloproteinase In Complex With
The Hydroxamic Acid Based Small Molecule Pt8421
Length = 526
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 SEDKKELLKRYGLDPDEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRLLQV 111
S+++KELLKR +D +FLS T ++ + ++ + D S+EE+ +QV
Sbjct: 62 SQEEKELLKRIQIDSSDFLS-----TEEKEFLKKLQIDIRDSLSEEEKELLNRIQV 112
>pdb|1C5B|H Chain H, Decarboxylase Catalytic Antibody 21d8 Unliganded Form
pdb|1C5C|H Chain H, Decarboxylase Catalytic Antibody 21d8-Hapten Complex
Length = 215
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM---SVTPPYTAVDYEVLMAQISK 255
LEW G +D S+ T + F RA V YM S+T +AV Y V +A +
Sbjct: 45 LEWIGLIDPSNGRTNFNDKFKSRATLTVDTSSSTAYMQLSSLTSEDSAVYYCVRIAYWGQ 104
Query: 256 SALVGKDSFIV---VEYPLRTDMLDTC------GCLVK 284
LV S +PL T GCLVK
Sbjct: 105 GTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,057,734
Number of Sequences: 62578
Number of extensions: 383233
Number of successful extensions: 893
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 33
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)