Query 021116
Match_columns 317
No_of_seqs 283 out of 2024
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03602 Cons_hypoth95: Conser 100.0 4.1E-39 8.9E-44 286.1 18.4 182 109-299 1-183 (183)
2 COG0742 N6-adenine-specific me 100.0 6.7E-38 1.5E-42 277.3 21.9 183 108-300 1-185 (187)
3 TIGR00095 RNA methyltransferas 100.0 4.6E-34 1E-38 254.8 23.9 185 105-299 5-189 (189)
4 PRK10909 rsmD 16S rRNA m(2)G96 100.0 8.4E-33 1.8E-37 248.7 23.8 179 108-300 12-190 (199)
5 PF05175 MTS: Methyltransferas 99.8 1.1E-17 2.3E-22 146.4 14.5 137 120-275 3-146 (170)
6 COG1092 Predicted SAM-dependen 99.7 1.5E-17 3.3E-22 163.1 13.8 112 155-272 217-339 (393)
7 PF13659 Methyltransf_26: Meth 99.7 2.9E-17 6.2E-22 133.2 11.5 107 156-270 1-116 (117)
8 COG4123 Predicted O-methyltran 99.7 2.4E-17 5.1E-22 152.5 12.0 158 127-305 25-202 (248)
9 TIGR02085 meth_trns_rumB 23S r 99.7 1.5E-16 3.2E-21 155.8 17.1 141 117-274 199-339 (374)
10 PF10672 Methyltrans_SAM: S-ad 99.7 9E-17 2E-21 151.9 14.2 111 155-272 123-241 (286)
11 TIGR00536 hemK_fam HemK family 99.7 2.8E-16 6E-21 148.3 17.3 142 115-273 79-248 (284)
12 TIGR03704 PrmC_rel_meth putati 99.7 4.3E-16 9.2E-21 144.8 17.1 143 115-273 51-220 (251)
13 PRK15128 23S rRNA m(5)C1962 me 99.7 4.8E-16 1E-20 153.3 18.1 108 155-268 220-338 (396)
14 COG2890 HemK Methylase of poly 99.7 4E-16 8.7E-21 147.3 16.5 140 115-273 77-242 (280)
15 TIGR03533 L3_gln_methyl protei 99.7 5.6E-16 1.2E-20 146.5 16.8 140 115-272 86-254 (284)
16 COG2242 CobL Precorrin-6B meth 99.7 4.4E-16 9.6E-21 137.9 13.9 124 131-275 17-141 (187)
17 COG2264 PrmA Ribosomal protein 99.7 6E-16 1.3E-20 146.6 13.5 165 92-288 115-287 (300)
18 COG2813 RsmC 16S RNA G1207 met 99.7 2.2E-15 4.7E-20 142.4 17.2 225 28-275 27-272 (300)
19 PRK11805 N5-glutamine S-adenos 99.7 2E-15 4.3E-20 144.3 17.2 140 115-272 98-266 (307)
20 PRK05031 tRNA (uracil-5-)-meth 99.7 1.6E-15 3.5E-20 147.9 16.9 141 119-273 175-324 (362)
21 PRK03522 rumB 23S rRNA methylu 99.7 4.2E-15 9.2E-20 142.2 18.1 142 118-276 140-281 (315)
22 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1E-15 2.2E-20 160.8 15.1 109 155-272 538-659 (702)
23 PRK01544 bifunctional N5-gluta 99.7 2.3E-15 5E-20 152.8 16.9 150 115-273 80-273 (506)
24 PRK14966 unknown domain/N5-glu 99.7 3.5E-15 7.6E-20 147.3 17.7 144 109-272 212-384 (423)
25 PF06325 PrmA: Ribosomal prote 99.7 1.6E-16 3.4E-21 151.0 7.2 169 91-292 113-286 (295)
26 PRK13168 rumA 23S rRNA m(5)U19 99.6 2.9E-15 6.4E-20 149.6 15.4 141 116-274 262-405 (443)
27 PRK15001 SAM-dependent 23S rib 99.6 3.4E-15 7.3E-20 146.4 14.5 141 119-275 199-346 (378)
28 TIGR02143 trmA_only tRNA (urac 99.6 5.4E-15 1.2E-19 143.8 15.3 139 119-274 166-316 (353)
29 TIGR00406 prmA ribosomal prote 99.6 1.3E-14 2.8E-19 137.3 17.1 187 57-274 67-264 (288)
30 PRK09489 rsmC 16S ribosomal RN 99.6 7.6E-15 1.6E-19 142.3 15.0 213 40-276 76-310 (342)
31 COG2263 Predicted RNA methylas 99.6 2.5E-15 5.4E-20 133.2 10.4 78 154-244 44-121 (198)
32 COG2265 TrmA SAM-dependent met 99.6 9.1E-15 2E-19 145.6 15.6 139 118-274 260-401 (432)
33 PF12847 Methyltransf_18: Meth 99.6 3E-15 6.6E-20 120.2 9.9 104 155-269 1-111 (112)
34 PRK14967 putative methyltransf 99.6 1.8E-14 3.9E-19 131.1 16.2 135 118-272 6-162 (223)
35 TIGR01177 conserved hypothetic 99.6 7.4E-15 1.6E-19 141.3 14.4 182 81-282 99-309 (329)
36 TIGR00138 gidB 16S rRNA methyl 99.6 9.4E-15 2E-19 129.6 13.8 126 128-272 17-145 (181)
37 COG1041 Predicted DNA modifica 99.6 5.6E-15 1.2E-19 141.9 13.3 139 128-285 175-326 (347)
38 TIGR00479 rumA 23S rRNA (uraci 99.6 3.2E-14 6.9E-19 141.4 16.2 140 117-273 258-400 (431)
39 TIGR00537 hemK_rel_arch HemK-r 99.6 3.8E-14 8.1E-19 124.4 14.8 123 155-292 19-168 (179)
40 PRK00517 prmA ribosomal protei 99.6 1.4E-13 3E-18 127.5 18.8 139 125-292 98-241 (250)
41 PRK00377 cbiT cobalt-precorrin 99.6 4.9E-14 1.1E-18 125.9 14.7 124 131-272 23-148 (198)
42 PF01170 UPF0020: Putative RNA 99.6 3.3E-14 7.2E-19 125.9 13.2 122 130-268 10-150 (179)
43 TIGR03534 RF_mod_PrmC protein- 99.6 8.9E-14 1.9E-18 127.0 16.4 137 116-272 55-220 (251)
44 PRK09328 N5-glutamine S-adenos 99.6 6.5E-14 1.4E-18 130.1 15.7 139 115-272 74-241 (275)
45 PRK07402 precorrin-6B methylas 99.6 4.1E-14 8.9E-19 126.0 13.5 128 128-275 20-148 (196)
46 PRK08287 cobalt-precorrin-6Y C 99.6 5.9E-14 1.3E-18 124.0 13.0 118 131-270 14-132 (187)
47 KOG2904 Predicted methyltransf 99.5 1.1E-13 2.3E-18 128.8 13.8 148 112-270 106-286 (328)
48 TIGR00308 TRM1 tRNA(guanine-26 99.5 7.5E-14 1.6E-18 136.8 12.9 121 157-293 46-168 (374)
49 PRK04338 N(2),N(2)-dimethylgua 99.5 4.6E-13 1E-17 131.6 14.7 99 156-269 58-158 (382)
50 PLN02672 methionine S-methyltr 99.5 4.4E-13 9.6E-18 145.1 15.8 147 115-274 83-283 (1082)
51 smart00650 rADc Ribosomal RNA 99.5 2.7E-13 5.9E-18 118.1 11.6 108 155-276 13-120 (169)
52 PLN02781 Probable caffeoyl-CoA 99.5 6.6E-13 1.4E-17 122.3 14.6 110 155-270 68-179 (234)
53 PF05958 tRNA_U5-meth_tr: tRNA 99.5 2.1E-13 4.5E-18 132.7 11.8 143 118-274 164-315 (352)
54 TIGR02469 CbiT precorrin-6Y C5 99.5 1.1E-12 2.5E-17 106.3 14.0 117 134-269 5-122 (124)
55 COG2226 UbiE Methylase involve 99.5 4.2E-13 9.2E-18 123.9 12.3 119 134-272 37-159 (238)
56 PRK00107 gidB 16S rRNA methylt 99.5 1.8E-12 3.8E-17 115.8 15.0 120 135-272 28-148 (187)
57 PLN02476 O-methyltransferase 99.4 2.6E-12 5.7E-17 121.2 15.8 111 154-270 117-229 (278)
58 PRK14968 putative methyltransf 99.4 5.4E-12 1.2E-16 110.1 16.3 106 155-272 23-151 (188)
59 KOG2187 tRNA uracil-5-methyltr 99.4 8.6E-13 1.9E-17 131.6 11.1 160 102-273 334-494 (534)
60 PF13847 Methyltransf_31: Meth 99.4 1.6E-12 3.5E-17 110.9 11.4 107 155-271 3-112 (152)
61 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2.9E-12 6.3E-17 119.9 13.4 108 154-270 70-200 (264)
62 COG2520 Predicted methyltransf 99.4 8E-12 1.7E-16 120.7 15.2 107 154-274 187-294 (341)
63 PRK11036 putative S-adenosyl-L 99.4 9.1E-12 2E-16 115.4 15.0 105 155-269 44-149 (255)
64 PF09445 Methyltransf_15: RNA 99.4 9.8E-13 2.1E-17 115.0 7.9 81 158-244 2-82 (163)
65 TIGR00080 pimt protein-L-isoas 99.4 5.4E-12 1.2E-16 114.2 12.6 102 154-271 76-179 (215)
66 PF01596 Methyltransf_3: O-met 99.4 1E-11 2.2E-16 112.5 14.3 127 133-271 29-157 (205)
67 PRK10901 16S rRNA methyltransf 99.4 6.4E-12 1.4E-16 125.1 13.7 107 154-270 243-373 (427)
68 PF02475 Met_10: Met-10+ like- 99.4 2.4E-12 5.2E-17 116.1 9.7 99 154-266 100-199 (200)
69 TIGR02752 MenG_heptapren 2-hep 99.4 2.2E-11 4.8E-16 110.4 15.7 106 155-271 45-153 (231)
70 PF01209 Ubie_methyltran: ubiE 99.4 1.8E-12 3.9E-17 119.5 8.4 114 135-268 34-152 (233)
71 PRK13944 protein-L-isoaspartat 99.4 1.1E-11 2.3E-16 111.7 13.2 102 154-270 71-174 (205)
72 PRK14903 16S rRNA methyltransf 99.4 1.3E-11 2.9E-16 123.1 15.0 109 154-270 236-367 (431)
73 PRK14902 16S rRNA methyltransf 99.4 6.9E-12 1.5E-16 125.4 12.9 108 154-269 249-379 (444)
74 PRK00121 trmB tRNA (guanine-N( 99.3 1.9E-11 4.2E-16 109.9 13.4 112 155-274 40-161 (202)
75 TIGR00477 tehB tellurite resis 99.3 1.8E-11 3.8E-16 109.5 12.5 100 155-268 30-132 (195)
76 PLN02244 tocopherol O-methyltr 99.3 1.5E-11 3.2E-16 119.1 12.7 106 155-270 118-224 (340)
77 COG4122 Predicted O-methyltran 99.3 3.7E-11 8.1E-16 109.7 14.2 110 154-273 58-170 (219)
78 COG0116 Predicted N6-adenine-s 99.3 1.3E-11 2.8E-16 120.3 11.8 124 130-270 173-345 (381)
79 PRK11207 tellurite resistance 99.3 2.9E-11 6.2E-16 108.3 12.7 100 155-267 30-132 (197)
80 PLN02396 hexaprenyldihydroxybe 99.3 2.5E-11 5.4E-16 116.9 12.9 108 154-272 130-238 (322)
81 PRK13942 protein-L-isoaspartat 99.3 3E-11 6.4E-16 109.5 12.2 102 154-271 75-178 (212)
82 TIGR00091 tRNA (guanine-N(7)-) 99.3 5.6E-11 1.2E-15 106.1 13.8 111 155-273 16-136 (194)
83 PRK15451 tRNA cmo(5)U34 methyl 99.3 4.7E-11 1E-15 110.4 13.7 104 155-270 56-165 (247)
84 PRK14901 16S rRNA methyltransf 99.3 3.4E-11 7.4E-16 120.2 13.5 84 154-242 251-336 (434)
85 PRK14904 16S rRNA methyltransf 99.3 3.1E-11 6.8E-16 120.8 13.2 108 154-271 249-379 (445)
86 PHA03412 putative methyltransf 99.3 1.5E-11 3.2E-16 113.4 9.9 74 155-243 49-126 (241)
87 TIGR00563 rsmB ribosomal RNA s 99.3 3.4E-11 7.3E-16 119.9 12.8 111 154-270 237-369 (426)
88 PRK11783 rlmL 23S rRNA m(2)G24 99.3 4.9E-11 1.1E-15 125.6 14.5 157 130-303 171-381 (702)
89 KOG3420 Predicted RNA methylas 99.3 9.8E-12 2.1E-16 106.2 6.8 102 130-244 26-127 (185)
90 PRK00811 spermidine synthase; 99.3 8.6E-11 1.9E-15 111.2 13.9 107 155-270 76-192 (283)
91 PLN02589 caffeoyl-CoA O-methyl 99.2 1.9E-10 4.2E-15 106.9 15.1 111 155-270 79-191 (247)
92 COG2227 UbiG 2-polyprenyl-3-me 99.2 3.7E-11 7.9E-16 110.4 10.1 108 154-274 58-166 (243)
93 PHA03411 putative methyltransf 99.2 4E-11 8.7E-16 112.8 10.6 103 155-272 64-186 (279)
94 PRK10742 putative methyltransf 99.2 4.8E-11 1E-15 110.6 10.6 78 158-243 91-176 (250)
95 PRK04457 spermidine synthase; 99.2 2E-10 4.3E-15 107.6 14.9 106 155-270 66-178 (262)
96 PLN02233 ubiquinone biosynthes 99.2 1.9E-10 4.2E-15 107.4 14.5 108 154-271 72-184 (261)
97 PRK12335 tellurite resistance 99.2 1E-10 2.3E-15 110.4 12.8 101 155-269 120-223 (287)
98 COG2521 Predicted archaeal met 99.2 1.1E-11 2.4E-16 113.2 5.7 109 154-270 133-246 (287)
99 PRK15068 tRNA mo(5)U34 methylt 99.2 1.7E-10 3.6E-15 111.1 13.7 105 154-269 121-226 (322)
100 PF02353 CMAS: Mycolic acid cy 99.2 9E-11 1.9E-15 110.7 11.5 103 154-270 61-167 (273)
101 TIGR00740 methyltransferase, p 99.2 3.7E-10 7.9E-15 103.5 14.9 104 155-270 53-162 (239)
102 PRK00312 pcm protein-L-isoaspa 99.2 1.6E-10 3.5E-15 104.0 12.1 100 154-270 77-176 (212)
103 PRK10258 biotin biosynthesis p 99.2 1.5E-10 3.2E-15 106.6 12.0 103 155-274 42-145 (251)
104 PRK11873 arsM arsenite S-adeno 99.2 3.4E-10 7.4E-15 105.5 13.9 105 154-269 76-183 (272)
105 PF08241 Methyltransf_11: Meth 99.2 3.4E-11 7.3E-16 92.6 5.9 94 160-267 1-95 (95)
106 KOG1499 Protein arginine N-met 99.2 3.9E-11 8.5E-16 115.2 7.4 129 154-300 59-190 (346)
107 TIGR00452 methyltransferase, p 99.2 4.3E-10 9.4E-15 108.0 14.5 106 154-270 120-226 (314)
108 PRK14103 trans-aconitate 2-met 99.2 2.2E-10 4.8E-15 106.0 12.0 98 154-270 28-127 (255)
109 PRK01683 trans-aconitate 2-met 99.2 4.4E-10 9.6E-15 103.8 12.9 99 155-270 31-131 (258)
110 PRK03612 spermidine synthase; 99.2 3.1E-10 6.8E-15 115.8 13.0 107 155-270 297-416 (521)
111 PRK11727 23S rRNA mA1618 methy 99.1 2E-10 4.4E-15 110.5 10.7 123 118-244 73-202 (321)
112 KOG2730 Methylase [General fun 99.1 1.3E-10 2.8E-15 105.4 8.6 103 132-245 77-179 (263)
113 PTZ00098 phosphoethanolamine N 99.1 5.3E-10 1.1E-14 104.6 12.8 105 154-271 51-158 (263)
114 PTZ00338 dimethyladenosine tra 99.1 5.8E-10 1.3E-14 106.2 13.1 92 134-243 22-113 (294)
115 TIGR00417 speE spermidine synt 99.1 3.7E-09 8.1E-14 99.2 18.2 107 155-270 72-187 (270)
116 cd02440 AdoMet_MTases S-adenos 99.1 7.2E-10 1.6E-14 84.4 10.8 101 158-268 1-103 (107)
117 COG2519 GCD14 tRNA(1-methylade 99.1 3.8E-10 8.1E-15 104.5 10.4 108 154-276 93-202 (256)
118 PRK08317 hypothetical protein; 99.1 1.7E-09 3.6E-14 97.0 14.3 121 131-270 2-125 (241)
119 COG2230 Cfa Cyclopropane fatty 99.1 7.7E-10 1.7E-14 104.4 12.4 106 154-272 71-179 (283)
120 PF13649 Methyltransf_25: Meth 99.1 2.6E-10 5.7E-15 90.7 7.9 93 159-263 1-101 (101)
121 PRK13943 protein-L-isoaspartat 99.1 1.5E-09 3.3E-14 104.6 14.1 101 154-270 79-181 (322)
122 smart00828 PKS_MT Methyltransf 99.1 6.6E-10 1.4E-14 100.3 10.6 103 157-270 1-105 (224)
123 TIGR02021 BchM-ChlM magnesium 99.1 1.3E-09 2.7E-14 98.6 12.3 116 132-266 37-155 (219)
124 KOG3191 Predicted N6-DNA-methy 99.1 5.5E-09 1.2E-13 92.4 15.8 135 155-300 43-206 (209)
125 PRK04266 fibrillarin; Provisio 99.1 2.2E-09 4.7E-14 98.6 13.7 104 154-268 71-175 (226)
126 PLN02336 phosphoethanolamine N 99.1 1.6E-09 3.5E-14 108.8 13.9 105 155-271 266-371 (475)
127 PRK00216 ubiE ubiquinone/menaq 99.1 1.6E-09 3.6E-14 97.6 12.3 105 155-269 51-158 (239)
128 PRK00274 ksgA 16S ribosomal RN 99.1 1.2E-09 2.6E-14 102.7 11.8 98 134-253 28-125 (272)
129 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.8E-09 3.8E-14 106.3 13.3 109 155-272 122-238 (390)
130 KOG1500 Protein arginine N-met 99.1 4.5E-10 9.7E-15 107.4 8.8 107 153-270 175-283 (517)
131 PF10294 Methyltransf_16: Puta 99.1 9.9E-10 2.1E-14 96.7 10.4 112 154-273 44-160 (173)
132 PF01135 PCMT: Protein-L-isoas 99.1 2.4E-09 5.3E-14 97.3 13.0 113 136-271 60-174 (209)
133 PF03848 TehB: Tellurite resis 99.1 1.2E-09 2.5E-14 98.1 10.7 103 154-270 29-134 (192)
134 COG2518 Pcm Protein-L-isoaspar 99.1 1.2E-09 2.6E-14 98.8 10.6 108 139-270 63-170 (209)
135 PLN02366 spermidine synthase 99.0 1.4E-08 3E-13 97.5 18.3 108 155-270 91-207 (308)
136 PRK07580 Mg-protoporphyrin IX 99.0 4E-09 8.7E-14 95.2 14.0 116 133-267 45-163 (230)
137 KOG1270 Methyltransferases [Co 99.0 2.7E-10 5.9E-15 105.7 6.0 107 155-275 89-201 (282)
138 PRK14896 ksgA 16S ribosomal RN 99.0 1E-09 2.2E-14 102.4 9.7 89 134-243 15-103 (258)
139 PLN02490 MPBQ/MSBQ methyltrans 99.0 4.2E-09 9.2E-14 102.2 14.4 118 132-269 96-215 (340)
140 PLN03075 nicotianamine synthas 99.0 3.8E-09 8.2E-14 100.6 13.7 105 155-269 123-233 (296)
141 PRK11705 cyclopropane fatty ac 99.0 5E-09 1.1E-13 103.2 14.5 101 154-271 166-269 (383)
142 PRK05134 bifunctional 3-demeth 99.0 5.3E-09 1.2E-13 95.1 13.7 105 154-270 47-152 (233)
143 PRK01581 speE spermidine synth 99.0 3.6E-09 7.8E-14 103.2 13.1 108 154-270 149-269 (374)
144 PLN02585 magnesium protoporphy 99.0 6.9E-09 1.5E-13 99.8 14.7 120 129-267 122-248 (315)
145 KOG1540 Ubiquinone biosynthesi 99.0 3.4E-09 7.3E-14 98.2 11.8 117 137-272 89-217 (296)
146 PF08003 Methyltransf_9: Prote 99.0 4.8E-09 1E-13 99.7 13.1 135 154-303 114-249 (315)
147 TIGR02716 C20_methyl_CrtF C-20 99.0 4.4E-09 9.5E-14 100.0 12.4 103 155-270 149-255 (306)
148 PF02384 N6_Mtase: N-6 DNA Met 99.0 9.9E-10 2.2E-14 104.3 7.6 103 129-244 27-138 (311)
149 PF05185 PRMT5: PRMT5 arginine 99.0 2.2E-09 4.8E-14 107.7 10.3 100 156-266 187-294 (448)
150 TIGR02072 BioC biotin biosynth 99.0 1.2E-08 2.5E-13 91.8 13.6 103 155-272 34-138 (240)
151 PRK11188 rrmJ 23S rRNA methylt 98.9 6.4E-09 1.4E-13 94.2 11.1 106 154-275 50-171 (209)
152 PF08704 GCD14: tRNA methyltra 98.9 9.8E-09 2.1E-13 95.6 12.5 112 154-276 39-153 (247)
153 PRK11933 yebU rRNA (cytosine-C 98.9 8.5E-09 1.8E-13 104.0 13.1 81 154-242 112-194 (470)
154 PRK06922 hypothetical protein; 98.9 5.7E-09 1.2E-13 108.1 11.9 106 155-270 418-538 (677)
155 TIGR01983 UbiG ubiquinone bios 98.9 1.2E-08 2.6E-13 91.8 12.7 105 155-270 45-150 (224)
156 TIGR03438 probable methyltrans 98.9 2E-08 4.3E-13 95.7 14.6 115 155-274 63-182 (301)
157 KOG1271 Methyltransferases [Ge 98.9 3.6E-09 7.7E-14 93.8 7.8 113 157-272 69-185 (227)
158 PLN02336 phosphoethanolamine N 98.9 8.3E-09 1.8E-13 103.7 11.4 104 155-270 37-143 (475)
159 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.6E-08 3.5E-13 90.1 12.0 103 155-270 39-144 (223)
160 PLN02823 spermine synthase 98.9 8.6E-08 1.9E-12 93.0 17.9 107 155-270 103-221 (336)
161 TIGR03840 TMPT_Se_Te thiopurin 98.9 9.4E-09 2E-13 93.6 10.1 102 155-269 34-152 (213)
162 PF13489 Methyltransf_23: Meth 98.9 2.2E-08 4.8E-13 84.5 11.6 97 154-272 21-118 (161)
163 PRK05785 hypothetical protein; 98.9 4.6E-08 1E-12 89.6 13.4 96 155-270 51-147 (226)
164 TIGR02987 met_A_Alw26 type II 98.9 2.2E-08 4.8E-13 102.1 12.4 110 130-243 6-124 (524)
165 KOG1663 O-methyltransferase [S 98.8 6.6E-08 1.4E-12 88.4 13.9 110 154-269 72-183 (237)
166 PRK13255 thiopurine S-methyltr 98.8 1.6E-08 3.5E-13 92.3 9.3 99 155-266 37-152 (218)
167 TIGR00755 ksgA dimethyladenosi 98.8 4.7E-08 1E-12 90.7 12.2 98 133-253 14-114 (253)
168 PTZ00146 fibrillarin; Provisio 98.8 6.8E-08 1.5E-12 91.8 13.3 127 129-270 110-238 (293)
169 PF08242 Methyltransf_12: Meth 98.8 7.7E-10 1.7E-14 87.3 0.1 97 160-265 1-99 (99)
170 TIGR03587 Pse_Me-ase pseudamin 98.8 8.1E-08 1.7E-12 86.8 12.7 71 155-240 43-114 (204)
171 PRK11088 rrmA 23S rRNA methylt 98.8 4.5E-08 9.7E-13 91.7 11.3 97 155-273 85-185 (272)
172 smart00138 MeTrc Methyltransfe 98.8 2.6E-08 5.6E-13 93.4 9.5 107 155-271 99-244 (264)
173 TIGR00438 rrmJ cell division p 98.8 6.5E-08 1.4E-12 85.6 11.5 106 154-275 31-152 (188)
174 COG3897 Predicted methyltransf 98.8 1.5E-08 3.3E-13 90.6 6.5 109 153-276 77-186 (218)
175 PF05401 NodS: Nodulation prot 98.7 3.5E-08 7.5E-13 88.6 8.2 103 155-272 43-149 (201)
176 COG0144 Sun tRNA and rRNA cyto 98.7 1.6E-07 3.5E-12 91.8 12.3 110 154-269 155-288 (355)
177 PF07021 MetW: Methionine bios 98.7 1.3E-07 2.8E-12 84.7 10.3 97 154-270 12-110 (193)
178 COG4106 Tam Trans-aconitate me 98.7 5.3E-08 1.1E-12 88.5 7.7 101 155-272 30-132 (257)
179 KOG2671 Putative RNA methylase 98.7 3.8E-08 8.3E-13 94.5 7.0 111 154-272 207-357 (421)
180 TIGR02081 metW methionine bios 98.7 1.9E-07 4.1E-12 83.0 10.9 86 155-254 13-99 (194)
181 PRK04148 hypothetical protein; 98.6 9.7E-07 2.1E-11 75.0 13.7 117 155-300 16-134 (134)
182 COG4076 Predicted RNA methylas 98.6 3.8E-08 8.2E-13 87.7 5.3 72 155-238 32-103 (252)
183 PF02005 TRM: N2,N2-dimethylgu 98.6 1.9E-07 4E-12 92.0 10.3 149 125-293 18-175 (377)
184 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 1.4E-06 3E-11 82.7 15.8 83 154-243 84-168 (283)
185 COG4976 Predicted methyltransf 98.6 2.5E-08 5.4E-13 91.3 3.6 118 156-293 126-245 (287)
186 PF02390 Methyltransf_4: Putat 98.6 5.4E-07 1.2E-11 81.0 11.9 108 156-272 18-136 (195)
187 PRK06202 hypothetical protein; 98.6 1.8E-07 3.8E-12 85.4 8.6 76 155-242 60-140 (232)
188 COG0030 KsgA Dimethyladenosine 98.6 7.8E-07 1.7E-11 83.3 12.4 90 136-243 18-107 (259)
189 TIGR00478 tly hemolysin TlyA f 98.5 5.7E-07 1.2E-11 82.9 8.8 47 154-200 74-120 (228)
190 COG1867 TRM1 N2,N2-dimethylgua 98.5 8E-07 1.7E-11 86.4 10.0 147 127-293 28-175 (380)
191 COG3963 Phospholipid N-methylt 98.5 1.1E-05 2.4E-10 70.8 16.0 125 128-270 28-158 (194)
192 PRK00050 16S rRNA m(4)C1402 me 98.4 1.7E-06 3.7E-11 82.6 10.8 78 155-239 19-98 (296)
193 PF01564 Spermine_synth: Sperm 98.4 1.6E-06 3.4E-11 80.7 10.2 107 155-270 76-192 (246)
194 KOG0820 Ribosomal RNA adenine 98.4 9.1E-07 2E-11 82.9 8.5 79 154-243 57-135 (315)
195 PF11599 AviRa: RRNA methyltra 98.4 3.6E-06 7.8E-11 76.6 12.1 137 155-299 51-241 (246)
196 KOG2915 tRNA(1-methyladenosine 98.4 2.9E-06 6.2E-11 79.6 10.3 118 113-243 52-189 (314)
197 KOG4300 Predicted methyltransf 98.3 2.6E-06 5.6E-11 77.2 8.7 121 134-270 58-183 (252)
198 COG0220 Predicted S-adenosylme 98.3 1E-05 2.2E-10 74.6 12.8 108 157-272 50-167 (227)
199 KOG2899 Predicted methyltransf 98.3 5.3E-06 1.1E-10 76.8 10.6 48 154-202 57-105 (288)
200 PF00398 RrnaAD: Ribosomal RNA 98.3 5.2E-06 1.1E-10 77.6 10.3 104 133-254 15-118 (262)
201 PF08123 DOT1: Histone methyla 98.3 1.1E-05 2.4E-10 73.3 11.9 105 154-268 41-157 (205)
202 PF05724 TPMT: Thiopurine S-me 98.3 4E-06 8.7E-11 76.7 8.7 102 154-265 36-151 (218)
203 PRK13256 thiopurine S-methyltr 98.2 1E-05 2.2E-10 74.5 10.6 107 155-270 43-164 (226)
204 PF05971 Methyltransf_10: Prot 98.2 3.3E-06 7.2E-11 80.6 7.1 114 122-243 69-189 (299)
205 PF13578 Methyltransf_24: Meth 98.2 1.9E-06 4.2E-11 68.9 4.4 99 160-268 1-104 (106)
206 KOG1227 Putative methyltransfe 98.2 1.6E-06 3.4E-11 82.2 4.3 103 155-271 194-299 (351)
207 PF02527 GidB: rRNA small subu 98.1 5.6E-05 1.2E-09 67.5 13.3 122 134-272 29-151 (184)
208 PF12147 Methyltransf_20: Puta 98.1 7.1E-05 1.5E-09 71.1 14.5 112 155-273 135-253 (311)
209 COG0421 SpeE Spermidine syntha 98.1 0.00014 3E-09 69.2 16.6 105 157-270 78-191 (282)
210 COG4262 Predicted spermidine s 98.1 4.4E-05 9.6E-10 74.4 13.3 114 155-276 289-414 (508)
211 PF03291 Pox_MCEL: mRNA cappin 98.1 1.8E-05 3.9E-10 76.8 10.4 119 155-275 62-192 (331)
212 cd00315 Cyt_C5_DNA_methylase C 98.1 4.8E-06 1E-10 78.5 5.9 72 158-242 2-73 (275)
213 KOG1661 Protein-L-isoaspartate 98.1 4E-05 8.6E-10 69.6 11.1 112 139-270 71-194 (237)
214 PHA01634 hypothetical protein 98.1 8.9E-06 1.9E-10 68.5 6.1 74 154-239 27-100 (156)
215 PF04816 DUF633: Family of unk 98.0 1.6E-05 3.6E-10 72.1 8.2 120 159-289 1-124 (205)
216 TIGR01444 fkbM_fam methyltrans 98.0 1.7E-05 3.7E-10 66.3 7.5 58 158-217 1-59 (143)
217 KOG1541 Predicted protein carb 98.0 3.9E-05 8.4E-10 70.3 10.1 69 155-237 50-118 (270)
218 KOG3010 Methyltransferase [Gen 98.0 8.1E-06 1.8E-10 75.4 5.3 103 158-271 36-139 (261)
219 KOG1975 mRNA cap methyltransfe 98.0 4.8E-05 1E-09 73.1 10.6 135 130-274 100-242 (389)
220 KOG1122 tRNA and rRNA cytosine 98.0 4.5E-05 9.7E-10 75.4 10.1 108 154-268 240-370 (460)
221 PRK01544 bifunctional N5-gluta 97.9 0.00011 2.4E-09 75.1 13.0 109 155-272 347-465 (506)
222 PF01861 DUF43: Protein of unk 97.9 0.00021 4.4E-09 66.3 12.8 109 154-273 43-153 (243)
223 COG0357 GidB Predicted S-adeno 97.9 0.00016 3.4E-09 66.2 11.0 116 132-266 46-165 (215)
224 COG0286 HsdM Type I restrictio 97.8 4.2E-05 9.1E-10 77.9 7.0 103 130-242 168-275 (489)
225 PF00891 Methyltransf_2: O-met 97.8 6.5E-05 1.4E-09 68.8 7.3 95 155-270 100-200 (241)
226 KOG1253 tRNA methyltransferase 97.7 4.2E-05 9.1E-10 76.9 5.5 107 155-270 109-217 (525)
227 PF00145 DNA_methylase: C-5 cy 97.7 0.00017 3.7E-09 67.8 9.4 95 158-270 2-111 (335)
228 PRK00536 speE spermidine synth 97.7 0.00041 8.9E-09 65.3 11.9 99 154-270 71-172 (262)
229 PF05891 Methyltransf_PK: AdoM 97.7 7.5E-05 1.6E-09 68.2 6.6 109 155-272 55-164 (218)
230 PLN02232 ubiquinone biosynthes 97.7 0.00015 3.2E-09 62.9 7.2 80 182-271 1-83 (160)
231 PF01555 N6_N4_Mtase: DNA meth 97.5 0.00036 7.8E-09 62.0 7.7 54 134-197 178-231 (231)
232 COG1189 Predicted rRNA methyla 97.5 0.00018 3.9E-09 66.5 5.8 101 153-269 77-178 (245)
233 PRK11760 putative 23S rRNA C24 97.5 0.00035 7.6E-09 68.0 7.8 69 154-239 210-278 (357)
234 KOG1709 Guanidinoacetate methy 97.5 0.0012 2.5E-08 60.6 10.5 107 154-270 100-207 (271)
235 KOG2078 tRNA modification enzy 97.4 0.0001 2.2E-09 73.0 3.3 65 154-220 248-313 (495)
236 PF01739 CheR: CheR methyltran 97.4 0.00095 2E-08 60.2 9.1 121 155-287 31-191 (196)
237 PF01728 FtsJ: FtsJ-like methy 97.4 4.8E-05 1E-09 66.7 0.6 104 155-271 23-141 (181)
238 KOG2361 Predicted methyltransf 97.4 0.00034 7.3E-09 64.9 6.1 109 158-274 74-188 (264)
239 PF13679 Methyltransf_32: Meth 97.4 0.0012 2.6E-08 55.9 9.0 63 154-217 24-93 (141)
240 PF04445 SAM_MT: Putative SAM- 97.4 0.00015 3.2E-09 67.2 3.5 79 157-243 77-163 (234)
241 PF05219 DREV: DREV methyltran 97.3 0.00071 1.5E-08 63.4 8.0 93 155-268 94-187 (265)
242 TIGR00006 S-adenosyl-methyltra 97.3 0.0024 5.2E-08 61.4 11.7 91 137-239 9-100 (305)
243 KOG4058 Uncharacterized conser 97.3 0.0019 4E-08 56.1 9.8 87 120-218 48-134 (199)
244 KOG1501 Arginine N-methyltrans 97.3 0.00042 9.1E-09 69.0 5.7 57 156-213 67-123 (636)
245 COG0270 Dcm Site-specific DNA 97.3 0.00068 1.5E-08 65.5 7.1 75 156-242 3-78 (328)
246 PRK10611 chemotaxis methyltran 97.3 0.00037 8E-09 66.4 5.0 106 156-270 116-263 (287)
247 TIGR00675 dcm DNA-methyltransf 97.2 0.00055 1.2E-08 65.9 6.1 70 159-242 1-70 (315)
248 PRK11524 putative methyltransf 97.2 0.0012 2.6E-08 62.5 8.0 45 154-200 207-251 (284)
249 COG2384 Predicted SAM-dependen 97.2 0.0013 2.8E-08 60.3 7.4 76 155-238 16-92 (226)
250 PRK11524 putative methyltransf 97.2 0.00067 1.5E-08 64.2 5.7 59 208-271 9-82 (284)
251 PRK13699 putative methylase; P 97.0 0.0032 6.9E-08 58.0 8.7 47 154-202 162-208 (227)
252 PF06962 rRNA_methylase: Putat 97.0 0.0019 4.2E-08 55.3 6.4 89 180-274 1-97 (140)
253 PF06080 DUF938: Protein of un 97.0 0.0032 6.9E-08 57.2 8.0 134 131-271 5-143 (204)
254 TIGR03439 methyl_EasF probable 97.0 0.032 6.9E-07 54.1 15.3 115 155-272 76-200 (319)
255 PF04378 RsmJ: Ribosomal RNA s 97.0 0.0023 5E-08 59.7 7.2 105 160-272 62-167 (245)
256 KOG2940 Predicted methyltransf 96.9 0.0018 3.9E-08 59.9 6.1 107 156-275 73-180 (325)
257 COG0500 SmtA SAM-dependent met 96.9 0.025 5.4E-07 43.7 11.9 104 159-273 52-159 (257)
258 PF07279 DUF1442: Protein of u 96.9 0.025 5.5E-07 51.7 13.3 106 154-273 40-152 (218)
259 PRK10458 DNA cytosine methylas 96.8 0.003 6.5E-08 64.1 7.3 83 156-242 88-180 (467)
260 PRK13699 putative methylase; P 96.8 0.002 4.3E-08 59.3 5.5 59 208-271 2-74 (227)
261 KOG2793 Putative N2,N2-dimethy 96.8 0.0069 1.5E-07 56.6 8.8 111 156-274 87-204 (248)
262 PF03059 NAS: Nicotianamine sy 96.7 0.01 2.2E-07 56.4 9.6 105 156-270 121-231 (276)
263 KOG2198 tRNA cytosine-5-methyl 96.7 0.0054 1.2E-07 60.0 8.0 114 154-269 154-296 (375)
264 COG0293 FtsJ 23S rRNA methylas 96.7 0.012 2.6E-07 53.5 9.6 108 154-275 44-165 (205)
265 TIGR00497 hsdM type I restrict 96.7 0.0037 7.9E-08 63.9 6.9 101 132-243 199-305 (501)
266 PF07942 N2227: N2227-like pro 96.6 0.0084 1.8E-07 56.7 8.3 46 154-203 55-100 (270)
267 COG3129 Predicted SAM-dependen 96.5 0.011 2.5E-07 54.7 8.2 120 116-243 37-165 (292)
268 COG1352 CheR Methylase of chem 96.4 0.0098 2.1E-07 56.2 7.2 124 134-271 79-243 (268)
269 COG2961 ComJ Protein involved 96.3 0.052 1.1E-06 50.8 11.0 104 160-271 93-197 (279)
270 PF04989 CmcI: Cephalosporin h 96.3 0.017 3.7E-07 52.6 7.7 110 155-270 32-148 (206)
271 PF01269 Fibrillarin: Fibrilla 96.2 0.035 7.5E-07 51.2 9.4 127 129-270 51-179 (229)
272 PF09243 Rsm22: Mitochondrial 96.2 0.019 4.1E-07 54.2 7.8 66 131-200 12-79 (274)
273 COG1568 Predicted methyltransf 96.1 0.026 5.7E-07 53.6 8.5 83 153-243 150-233 (354)
274 PF01795 Methyltransf_5: MraW 96.1 0.027 5.9E-07 54.3 8.7 91 138-239 10-101 (310)
275 KOG3201 Uncharacterized conser 96.0 0.011 2.4E-07 52.1 5.1 113 154-274 28-145 (201)
276 PF05148 Methyltransf_8: Hypot 96.0 0.0042 9.1E-08 56.7 2.7 117 154-299 71-194 (219)
277 KOG2912 Predicted DNA methylas 96.0 0.032 7E-07 53.9 8.3 115 120-243 67-190 (419)
278 KOG3115 Methyltransferase-like 95.9 0.021 4.5E-07 52.1 6.4 108 156-271 61-185 (249)
279 PRK01747 mnmC bifunctional tRN 95.7 0.029 6.3E-07 59.1 7.7 161 124-293 22-231 (662)
280 PF07091 FmrO: Ribosomal RNA m 95.6 0.033 7.2E-07 52.1 6.8 72 155-237 105-177 (251)
281 COG0275 Predicted S-adenosylme 95.5 0.17 3.8E-06 48.6 11.2 92 136-239 11-104 (314)
282 PF03141 Methyltransf_29: Puta 95.3 0.034 7.3E-07 56.6 6.0 134 118-272 82-222 (506)
283 KOG1269 SAM-dependent methyltr 95.1 0.058 1.3E-06 53.2 6.9 107 154-270 109-216 (364)
284 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.0 0.11 2.5E-06 48.8 8.4 113 154-272 55-202 (256)
285 KOG3178 Hydroxyindole-O-methyl 95.0 0.076 1.6E-06 51.8 7.4 98 156-270 178-276 (342)
286 COG1889 NOP1 Fibrillarin-like 94.9 0.49 1.1E-05 43.2 11.7 126 129-269 54-180 (231)
287 KOG3045 Predicted RNA methylas 94.4 0.064 1.4E-06 50.7 5.0 87 155-271 180-266 (325)
288 PF10237 N6-adenineMlase: Prob 93.8 0.25 5.5E-06 43.3 7.3 99 155-270 25-124 (162)
289 COG0863 DNA modification methy 93.6 0.35 7.6E-06 45.1 8.5 47 154-202 221-267 (302)
290 KOG0822 Protein kinase inhibit 93.4 0.15 3.3E-06 52.3 5.9 100 156-267 368-476 (649)
291 COG1064 AdhP Zn-dependent alco 92.7 1.2 2.5E-05 43.7 10.7 95 154-271 165-261 (339)
292 KOG1099 SAM-dependent methyltr 92.7 0.34 7.4E-06 45.1 6.5 95 156-268 42-162 (294)
293 PF03269 DUF268: Caenorhabditi 92.6 0.17 3.7E-06 44.6 4.3 117 156-296 2-132 (177)
294 COG1743 Adenine-specific DNA m 92.4 0.14 3E-06 54.6 4.0 46 154-201 89-134 (875)
295 PF05430 Methyltransf_30: S-ad 92.1 0.19 4.1E-06 42.1 3.9 75 208-292 33-114 (124)
296 PF01555 N6_N4_Mtase: DNA meth 91.7 0.13 2.8E-06 45.5 2.6 42 232-273 1-60 (231)
297 KOG2352 Predicted spermine/spe 91.6 0.49 1.1E-05 48.2 6.9 113 156-272 296-419 (482)
298 KOG2920 Predicted methyltransf 91.5 0.15 3.2E-06 48.5 2.8 38 154-191 115-152 (282)
299 KOG0024 Sorbitol dehydrogenase 91.1 2.2 4.8E-05 41.6 10.4 102 154-269 168-273 (354)
300 PF02086 MethyltransfD12: D12 90.6 0.25 5.5E-06 45.2 3.5 40 155-196 20-59 (260)
301 KOG2352 Predicted spermine/spe 90.6 1.1 2.3E-05 45.8 8.1 101 158-268 51-160 (482)
302 KOG3987 Uncharacterized conser 89.9 0.095 2.1E-06 48.1 0.0 40 155-196 112-151 (288)
303 COG5459 Predicted rRNA methyla 89.8 0.85 1.8E-05 45.0 6.4 129 131-270 92-226 (484)
304 COG1063 Tdh Threonine dehydrog 89.2 4.1 8.9E-05 39.6 10.8 100 155-270 168-270 (350)
305 PF00107 ADH_zinc_N: Zinc-bind 89.1 0.97 2.1E-05 36.6 5.5 88 165-272 1-92 (130)
306 PRK10904 DNA adenine methylase 88.9 0.95 2.1E-05 42.6 6.0 69 207-284 157-242 (271)
307 KOG1562 Spermidine synthase [A 88.9 3.5 7.6E-05 39.8 9.7 108 155-270 121-237 (337)
308 KOG1201 Hydroxysteroid 17-beta 88.4 2.3 4.9E-05 40.9 8.1 81 154-239 36-122 (300)
309 TIGR00571 dam DNA adenine meth 88.1 1 2.2E-05 42.3 5.6 68 207-284 155-240 (266)
310 PF05050 Methyltransf_21: Meth 88.0 1.2 2.6E-05 37.2 5.5 50 161-211 1-57 (167)
311 KOG3924 Putative protein methy 87.4 2.9 6.2E-05 41.8 8.4 109 154-272 191-311 (419)
312 TIGR03451 mycoS_dep_FDH mycoth 87.3 6.3 0.00014 37.8 10.8 98 154-269 175-276 (358)
313 PF04672 Methyltransf_19: S-ad 87.2 3.5 7.6E-05 39.1 8.6 114 157-274 70-195 (267)
314 PF05711 TylF: Macrocin-O-meth 87.2 3.6 7.8E-05 38.6 8.6 105 156-270 75-213 (248)
315 PRK09880 L-idonate 5-dehydroge 86.9 5.9 0.00013 37.8 10.2 95 154-269 168-266 (343)
316 cd08283 FDH_like_1 Glutathione 86.8 6.5 0.00014 38.3 10.7 44 154-198 183-228 (386)
317 KOG1596 Fibrillarin and relate 86.8 1.2 2.5E-05 42.0 5.0 124 130-270 135-262 (317)
318 KOG2798 Putative trehalase [Ca 85.9 1.2 2.6E-05 43.3 4.7 36 155-191 150-185 (369)
319 KOG2360 Proliferation-associat 85.3 1.2 2.6E-05 44.2 4.6 83 154-243 212-296 (413)
320 COG4889 Predicted helicase [Ge 82.9 5.9 0.00013 43.6 8.7 47 154-201 844-900 (1518)
321 cd08281 liver_ADH_like1 Zinc-d 82.8 12 0.00026 36.1 10.4 97 154-269 190-290 (371)
322 PRK15001 SAM-dependent 23S rib 82.4 17 0.00036 36.2 11.3 97 158-271 47-144 (378)
323 KOG0919 C-5 cytosine-specific 80.4 1.8 3.9E-05 40.7 3.5 76 156-242 3-80 (338)
324 PRK08644 thiamine biosynthesis 80.2 9.6 0.00021 34.6 8.2 98 130-237 4-123 (212)
325 KOG4589 Cell division protein 79.9 3.1 6.7E-05 37.8 4.7 122 138-274 52-189 (232)
326 cd08254 hydroxyacyl_CoA_DH 6-h 79.9 17 0.00036 33.8 10.0 98 154-269 164-263 (338)
327 PRK12475 thiamine/molybdopteri 78.8 11 0.00023 36.9 8.5 77 154-237 22-122 (338)
328 TIGR02356 adenyl_thiF thiazole 78.7 12 0.00027 33.4 8.3 34 154-187 19-54 (202)
329 PF05063 MT-A70: MT-A70 ; Int 78.2 1.7 3.8E-05 38.0 2.6 41 232-272 1-55 (176)
330 PF00072 Response_reg: Respons 78.1 28 0.00061 26.5 10.4 80 181-271 1-80 (112)
331 PF11899 DUF3419: Protein of u 77.9 7.7 0.00017 38.6 7.3 45 154-200 34-78 (380)
332 KOG0821 Predicted ribosomal RN 77.7 4.2 9E-05 37.9 4.9 62 154-218 49-110 (326)
333 PRK08293 3-hydroxybutyryl-CoA 76.7 27 0.00058 32.7 10.4 97 158-269 5-120 (287)
334 KOG2356 Transcriptional activa 76.5 3.3 7.2E-05 39.9 4.0 67 204-273 160-237 (366)
335 PF10354 DUF2431: Domain of un 76.2 6.4 0.00014 34.5 5.6 107 164-274 3-130 (166)
336 PF02254 TrkA_N: TrkA-N domain 76.0 24 0.00052 27.8 8.5 91 164-272 4-99 (116)
337 PF07757 AdoMet_MTase: Predict 75.5 2.7 5.9E-05 34.6 2.8 35 155-190 58-92 (112)
338 PRK10309 galactitol-1-phosphat 75.1 36 0.00079 32.2 11.0 98 154-269 159-260 (347)
339 PRK07063 short chain dehydroge 74.9 33 0.00072 30.9 10.2 83 154-239 5-94 (260)
340 cd05188 MDR Medium chain reduc 74.8 42 0.0009 29.7 10.7 99 154-270 133-233 (271)
341 PRK05854 short chain dehydroge 74.4 33 0.00071 32.4 10.4 83 154-239 12-101 (313)
342 PTZ00357 methyltransferase; Pr 74.1 5.1 0.00011 43.0 5.0 102 157-261 702-823 (1072)
343 PF11968 DUF3321: Putative met 73.8 12 0.00026 34.5 6.8 141 139-303 34-195 (219)
344 PRK05867 short chain dehydroge 73.7 47 0.001 29.8 10.9 82 154-240 7-95 (253)
345 PRK09260 3-hydroxybutyryl-CoA 73.7 29 0.00063 32.5 9.8 97 158-271 3-119 (288)
346 PLN02740 Alcohol dehydrogenase 73.6 50 0.0011 32.0 11.7 41 154-197 197-241 (381)
347 PRK05703 flhF flagellar biosyn 73.5 71 0.0015 32.1 13.0 58 176-240 249-308 (424)
348 PRK07102 short chain dehydroge 73.4 22 0.00048 31.7 8.6 79 158-240 3-85 (243)
349 cd00757 ThiF_MoeB_HesA_family 73.1 20 0.00044 32.5 8.3 78 154-238 19-118 (228)
350 COG3510 CmcI Cephalosporin hyd 73.0 41 0.00088 30.9 9.8 111 154-276 68-187 (237)
351 cd05278 FDH_like Formaldehyde 73.0 46 0.00099 31.2 11.0 99 154-268 166-266 (347)
352 cd00755 YgdL_like Family of ac 72.9 16 0.00035 33.7 7.7 34 155-188 10-45 (231)
353 TIGR03201 dearomat_had 6-hydro 72.5 37 0.00081 32.3 10.4 39 154-196 165-207 (349)
354 cd01487 E1_ThiF_like E1_ThiF_l 72.5 18 0.0004 31.6 7.6 73 159-238 2-95 (174)
355 PRK15116 sulfur acceptor prote 72.4 28 0.0006 33.0 9.2 34 154-187 28-63 (268)
356 PRK09242 tropinone reductase; 72.4 48 0.001 29.7 10.6 85 154-241 7-98 (257)
357 PRK06914 short chain dehydroge 72.2 31 0.00068 31.4 9.5 82 156-240 3-90 (280)
358 PRK00066 ldh L-lactate dehydro 71.9 90 0.002 30.0 12.8 103 154-272 4-125 (315)
359 COG0863 DNA modification methy 71.7 7.2 0.00016 36.2 5.1 59 208-271 17-101 (302)
360 PRK06172 short chain dehydroge 71.3 42 0.00092 29.9 10.0 82 154-240 5-93 (253)
361 COG1062 AdhC Zn-dependent alco 70.5 51 0.0011 32.6 10.6 103 139-268 176-284 (366)
362 cd08293 PTGR2 Prostaglandin re 70.4 45 0.00098 31.3 10.4 95 157-268 156-253 (345)
363 PF01210 NAD_Gly3P_dh_N: NAD-d 70.3 53 0.0011 27.9 9.8 92 159-267 2-101 (157)
364 PLN02827 Alcohol dehydrogenase 70.2 59 0.0013 31.6 11.3 96 154-268 192-294 (378)
365 PRK07688 thiamine/molybdopteri 70.0 28 0.00061 33.9 8.9 77 154-237 22-122 (339)
366 PRK07062 short chain dehydroge 69.9 45 0.00097 30.1 9.8 83 154-239 6-95 (265)
367 cd05292 LDH_2 A subgroup of L- 69.8 96 0.0021 29.6 12.5 95 159-271 3-118 (308)
368 TIGR02818 adh_III_F_hyde S-(hy 69.2 93 0.002 30.0 12.4 41 154-197 184-228 (368)
369 cd05564 PTS_IIB_chitobiose_lic 68.7 15 0.00033 29.0 5.6 38 193-239 17-54 (96)
370 COG1565 Uncharacterized conser 68.7 25 0.00054 34.9 8.2 64 134-202 60-132 (370)
371 PRK07066 3-hydroxybutyryl-CoA 68.0 59 0.0013 31.5 10.7 99 157-270 8-120 (321)
372 PLN03209 translocon at the inn 67.9 35 0.00077 35.9 9.6 78 155-239 79-167 (576)
373 cd08285 NADP_ADH NADP(H)-depen 67.8 66 0.0014 30.4 10.9 97 154-268 165-265 (351)
374 TIGR03366 HpnZ_proposed putati 67.1 1E+02 0.0023 28.3 12.2 95 154-269 119-218 (280)
375 PRK05876 short chain dehydroge 67.0 66 0.0014 29.6 10.5 82 154-240 4-92 (275)
376 KOG0022 Alcohol dehydrogenase, 66.9 13 0.00028 36.4 5.7 70 154-236 191-267 (375)
377 PRK06125 short chain dehydroge 66.8 86 0.0019 28.2 11.0 81 154-239 5-89 (259)
378 PRK06139 short chain dehydroge 66.7 59 0.0013 31.2 10.4 82 154-240 5-93 (330)
379 PLN03154 putative allyl alcoho 66.6 84 0.0018 30.1 11.5 97 154-268 157-257 (348)
380 KOG3350 Uncharacterized conser 66.1 8 0.00017 34.8 3.8 92 155-270 73-173 (217)
381 TIGR00518 alaDH alanine dehydr 66.0 44 0.00096 32.9 9.5 39 155-197 166-208 (370)
382 PF03721 UDPG_MGDP_dh_N: UDP-g 65.4 33 0.00072 30.3 7.8 89 165-270 7-121 (185)
383 PRK05597 molybdopterin biosynt 65.4 31 0.00068 33.7 8.3 77 154-238 26-125 (355)
384 PF00106 adh_short: short chai 65.2 73 0.0016 26.2 9.6 79 159-241 3-90 (167)
385 PRK05808 3-hydroxybutyryl-CoA 65.0 93 0.002 28.9 11.2 95 158-270 5-119 (282)
386 COG2933 Predicted SAM-dependen 64.9 15 0.00032 35.3 5.5 102 120-239 177-278 (358)
387 PRK08945 putative oxoacyl-(acy 64.1 81 0.0018 28.0 10.3 82 154-239 10-100 (247)
388 COG3392 Adenine-specific DNA m 64.1 4.6 0.0001 38.5 2.0 35 154-189 26-60 (330)
389 cd08239 THR_DH_like L-threonin 64.0 96 0.0021 29.1 11.2 97 154-269 162-262 (339)
390 COG2241 CobL Precorrin-6B meth 63.9 5.8 0.00013 36.3 2.6 53 54-108 151-204 (210)
391 PRK08762 molybdopterin biosynt 63.9 24 0.00052 34.7 7.2 33 155-187 134-168 (376)
392 PRK08217 fabG 3-ketoacyl-(acyl 63.8 93 0.002 27.4 10.5 82 154-240 3-91 (253)
393 PRK06124 gluconate 5-dehydroge 63.6 84 0.0018 28.0 10.3 82 154-240 9-97 (256)
394 KOG2651 rRNA adenine N-6-methy 63.5 28 0.0006 35.0 7.3 39 156-196 154-193 (476)
395 PRK07530 3-hydroxybutyryl-CoA 63.5 1.3E+02 0.0027 28.2 11.8 98 157-270 5-120 (292)
396 cd01485 E1-1_like Ubiquitin ac 63.4 58 0.0013 29.0 9.0 31 155-187 18-52 (198)
397 PRK07890 short chain dehydroge 63.4 1E+02 0.0022 27.4 10.8 81 154-239 3-90 (258)
398 PRK08328 hypothetical protein; 62.9 42 0.00092 30.7 8.2 34 154-187 25-60 (231)
399 TIGR02822 adh_fam_2 zinc-bindi 62.7 70 0.0015 30.4 10.0 86 154-269 164-254 (329)
400 PF07669 Eco57I: Eco57I restri 62.3 4.7 0.0001 32.4 1.6 13 231-243 2-14 (106)
401 PRK08862 short chain dehydroge 62.2 92 0.002 27.9 10.2 82 154-239 3-91 (227)
402 COG0677 WecC UDP-N-acetyl-D-ma 62.1 64 0.0014 32.6 9.7 100 157-270 10-129 (436)
403 cd01483 E1_enzyme_family Super 62.0 67 0.0014 26.5 8.7 71 159-238 2-96 (143)
404 PF01488 Shikimate_DH: Shikima 61.7 46 0.001 27.6 7.6 76 154-243 10-87 (135)
405 PRK14106 murD UDP-N-acetylmura 61.6 45 0.00097 33.1 8.8 72 154-240 3-77 (450)
406 PRK08339 short chain dehydroge 61.5 46 0.00099 30.4 8.2 81 154-239 6-93 (263)
407 PRK07677 short chain dehydroge 61.4 1.1E+02 0.0025 27.2 10.7 78 157-239 2-86 (252)
408 PF07015 VirC1: VirC1 protein; 61.2 28 0.0006 32.4 6.6 61 173-240 26-92 (231)
409 cd08300 alcohol_DH_class_III c 61.0 1.5E+02 0.0033 28.4 12.1 40 154-196 185-228 (368)
410 KOG1098 Putative SAM-dependent 61.0 11 0.00023 40.0 4.2 54 136-189 25-80 (780)
411 PRK07035 short chain dehydroge 60.9 98 0.0021 27.5 10.2 82 154-240 6-94 (252)
412 PRK06949 short chain dehydroge 60.7 96 0.0021 27.6 10.1 82 154-240 7-95 (258)
413 PRK06197 short chain dehydroge 60.7 90 0.0019 29.0 10.2 83 154-239 14-103 (306)
414 PRK08267 short chain dehydroge 60.3 53 0.0012 29.5 8.4 76 158-240 3-86 (260)
415 PRK06035 3-hydroxyacyl-CoA deh 59.7 1.1E+02 0.0025 28.5 10.8 38 158-199 5-46 (291)
416 PF02636 Methyltransf_28: Puta 59.6 12 0.00025 34.6 3.9 45 156-201 19-72 (252)
417 cd01065 NAD_bind_Shikimate_DH 59.6 72 0.0016 26.3 8.5 72 154-242 17-92 (155)
418 PRK08251 short chain dehydroge 59.4 98 0.0021 27.4 9.9 81 156-239 2-89 (248)
419 TIGR00571 dam DNA adenine meth 59.3 21 0.00045 33.4 5.6 49 132-191 10-58 (266)
420 PF03141 Methyltransf_29: Puta 59.2 6.2 0.00014 40.5 2.2 98 157-270 367-468 (506)
421 PF02737 3HCDH_N: 3-hydroxyacy 58.9 62 0.0013 28.3 8.3 122 160-302 3-142 (180)
422 PF02558 ApbA: Ketopantoate re 58.9 35 0.00077 28.2 6.5 96 164-272 4-104 (151)
423 cd08238 sorbose_phosphate_red 58.8 1.2E+02 0.0026 29.7 11.2 43 155-198 175-222 (410)
424 PRK06194 hypothetical protein; 58.7 93 0.002 28.3 9.8 81 155-240 5-92 (287)
425 COG1748 LYS9 Saccharopine dehy 58.4 73 0.0016 31.9 9.4 73 157-241 2-78 (389)
426 PRK07478 short chain dehydroge 58.3 1.4E+02 0.003 26.7 11.1 82 154-240 4-92 (254)
427 cd08294 leukotriene_B4_DH_like 58.3 1E+02 0.0022 28.5 10.1 96 154-268 142-240 (329)
428 cd08232 idonate-5-DH L-idonate 58.2 65 0.0014 30.1 8.9 95 155-268 165-261 (339)
429 PRK05866 short chain dehydroge 58.0 1.1E+02 0.0023 28.6 10.3 80 155-239 39-125 (293)
430 PRK12548 shikimate 5-dehydroge 57.8 98 0.0021 29.2 10.0 81 154-242 124-210 (289)
431 PRK07097 gluconate 5-dehydroge 57.5 96 0.0021 28.0 9.6 83 154-241 8-97 (265)
432 PRK07904 short chain dehydroge 57.2 38 0.00082 30.8 6.9 82 155-240 7-96 (253)
433 PRK08703 short chain dehydroge 56.9 1.2E+02 0.0026 26.8 10.0 58 154-215 4-65 (239)
434 PRK12826 3-ketoacyl-(acyl-carr 56.7 1.4E+02 0.003 26.2 10.4 81 155-240 5-92 (251)
435 PRK08277 D-mannonate oxidoredu 56.6 1.2E+02 0.0027 27.4 10.2 81 154-239 8-95 (278)
436 PRK08340 glucose-1-dehydrogena 56.2 78 0.0017 28.5 8.8 76 158-239 2-84 (259)
437 PRK08589 short chain dehydroge 56.1 98 0.0021 28.2 9.5 81 154-240 4-91 (272)
438 COG0338 Dam Site-specific DNA 56.1 11 0.00023 36.0 3.0 57 208-274 157-232 (274)
439 cd08230 glucose_DH Glucose deh 56.1 94 0.002 29.6 9.7 91 155-269 172-269 (355)
440 cd00650 LDH_MDH_like NAD-depen 56.1 44 0.00096 30.9 7.2 80 179-272 27-122 (263)
441 cd01484 E1-2_like Ubiquitin ac 56.0 78 0.0017 29.2 8.7 71 159-238 2-98 (234)
442 PF11899 DUF3419: Protein of u 55.9 25 0.00054 35.0 5.8 70 196-273 264-338 (380)
443 PRK05600 thiamine biosynthesis 55.8 65 0.0014 31.8 8.6 77 154-237 39-137 (370)
444 COG1086 Predicted nucleoside-d 55.7 1E+02 0.0022 32.5 10.2 83 154-241 248-335 (588)
445 PTZ00082 L-lactate dehydrogena 55.3 2E+02 0.0044 27.7 12.2 37 155-191 5-43 (321)
446 PRK07502 cyclohexadienyl dehyd 55.3 1.1E+02 0.0025 28.8 10.0 87 157-267 7-98 (307)
447 PRK07576 short chain dehydroge 55.3 1.1E+02 0.0023 27.8 9.6 81 154-239 7-94 (264)
448 PRK07109 short chain dehydroge 55.2 1.3E+02 0.0029 28.7 10.6 82 154-240 6-94 (334)
449 PF02153 PDH: Prephenate dehyd 55.0 45 0.00097 30.9 7.0 80 170-272 2-82 (258)
450 PF02719 Polysacc_synt_2: Poly 54.3 37 0.00079 32.7 6.4 74 165-241 6-87 (293)
451 TIGR03499 FlhF flagellar biosy 53.9 1E+02 0.0022 29.0 9.4 56 177-240 223-281 (282)
452 TIGR02825 B4_12hDH leukotriene 53.8 1.9E+02 0.0041 26.9 11.6 93 154-268 137-236 (325)
453 PRK05690 molybdopterin biosynt 53.5 72 0.0016 29.5 8.1 77 154-237 30-128 (245)
454 PRK06130 3-hydroxybutyryl-CoA 53.1 1.7E+02 0.0038 27.4 10.9 98 157-269 5-115 (311)
455 cd05285 sorbitol_DH Sorbitol d 52.6 1.8E+02 0.0039 27.3 10.9 42 154-196 161-204 (343)
456 cd01488 Uba3_RUB Ubiquitin act 52.5 50 0.0011 31.7 7.0 70 159-237 2-94 (291)
457 COG3392 Adenine-specific DNA m 52.2 11 0.00023 36.1 2.3 29 209-245 189-217 (330)
458 PRK09186 flagellin modificatio 52.1 1.2E+02 0.0026 26.9 9.2 82 155-239 3-91 (256)
459 PRK07819 3-hydroxybutyryl-CoA 52.0 1.2E+02 0.0025 28.7 9.4 41 158-200 7-49 (286)
460 PRK07523 gluconate 5-dehydroge 51.9 1.5E+02 0.0032 26.4 9.9 82 154-240 8-96 (255)
461 PRK06138 short chain dehydroge 50.9 1.8E+02 0.0038 25.7 10.4 81 154-240 3-90 (252)
462 PRK09291 short chain dehydroge 50.8 1.5E+02 0.0033 26.2 9.7 75 157-239 3-81 (257)
463 PRK08265 short chain dehydroge 50.7 1.2E+02 0.0026 27.4 9.1 79 154-240 4-89 (261)
464 PRK07326 short chain dehydroge 50.3 1.7E+02 0.0038 25.5 10.0 79 155-239 5-90 (237)
465 COG1893 ApbA Ketopantoate redu 50.2 76 0.0016 30.5 7.9 38 230-271 66-103 (307)
466 cd01489 Uba2_SUMO Ubiquitin ac 50.1 67 0.0015 31.1 7.5 70 159-237 2-96 (312)
467 PRK03659 glutathione-regulated 50.0 73 0.0016 33.5 8.4 92 164-274 406-503 (601)
468 PRK07814 short chain dehydroge 49.9 1.7E+02 0.0036 26.4 9.9 81 154-239 8-95 (263)
469 PRK08303 short chain dehydroge 49.8 1.1E+02 0.0023 28.9 8.9 81 154-239 6-103 (305)
470 PLN02668 indole-3-acetate carb 49.7 11 0.00025 37.5 2.2 18 156-173 64-81 (386)
471 PRK12384 sorbitol-6-phosphate 49.7 1.4E+02 0.0031 26.6 9.3 80 157-239 3-89 (259)
472 PF02086 MethyltransfD12: D12 49.7 18 0.0004 32.8 3.5 30 208-243 160-189 (260)
473 COG1179 Dinucleotide-utilizing 49.4 29 0.00064 32.7 4.7 37 155-191 29-67 (263)
474 cd05293 LDH_1 A subgroup of L- 49.4 2.4E+02 0.0053 27.0 11.3 100 157-272 4-123 (312)
475 PLN02780 ketoreductase/ oxidor 48.9 82 0.0018 30.0 8.0 59 155-216 52-114 (320)
476 cd01492 Aos1_SUMO Ubiquitin ac 48.9 1.2E+02 0.0025 27.1 8.5 75 155-238 20-117 (197)
477 cd00300 LDH_like L-lactate deh 48.9 2.2E+02 0.0048 27.0 10.9 83 175-272 19-118 (300)
478 PRK05650 short chain dehydroge 48.8 1.7E+02 0.0038 26.4 9.9 78 158-240 2-86 (270)
479 PRK07454 short chain dehydroge 48.6 1.6E+02 0.0034 26.0 9.4 81 155-240 5-92 (241)
480 PHA02518 ParA-like protein; Pr 48.6 33 0.00073 29.8 4.9 17 173-190 25-41 (211)
481 PRK06200 2,3-dihydroxy-2,3-dih 48.3 1.5E+02 0.0033 26.6 9.4 79 154-240 4-89 (263)
482 cd08278 benzyl_alcohol_DH Benz 48.2 2E+02 0.0044 27.5 10.7 93 155-269 186-285 (365)
483 PRK07791 short chain dehydroge 48.0 1.2E+02 0.0027 28.0 8.9 82 154-240 4-101 (286)
484 PRK03562 glutathione-regulated 47.0 93 0.002 32.9 8.7 97 157-274 401-503 (621)
485 cd08301 alcohol_DH_plants Plan 46.9 2.6E+02 0.0057 26.6 11.7 40 154-196 186-229 (369)
486 PLN02253 xanthoxin dehydrogena 46.9 1.7E+02 0.0036 26.6 9.5 80 154-239 16-102 (280)
487 PRK07417 arogenate dehydrogena 46.8 1.3E+02 0.0027 28.1 8.7 77 165-265 7-87 (279)
488 PRK06720 hypothetical protein; 46.8 1.9E+02 0.0041 24.9 10.4 82 154-240 14-102 (169)
489 PRK07024 short chain dehydroge 46.8 1.6E+02 0.0034 26.4 9.2 77 157-239 3-86 (257)
490 TIGR02355 moeB molybdopterin s 46.8 1.1E+02 0.0024 28.2 8.2 34 155-188 23-58 (240)
491 PRK05875 short chain dehydroge 46.6 1.5E+02 0.0032 26.8 9.1 83 154-239 5-94 (276)
492 TIGR00692 tdh L-threonine 3-de 46.6 2.5E+02 0.0055 26.3 10.9 98 154-269 160-261 (340)
493 PRK08223 hypothetical protein; 46.5 1E+02 0.0023 29.5 8.1 35 154-188 25-61 (287)
494 cd08295 double_bond_reductase_ 46.4 2.1E+02 0.0046 26.8 10.4 97 154-268 150-250 (338)
495 PRK10310 PTS system galactitol 46.3 99 0.0022 24.2 6.8 37 196-241 24-60 (94)
496 PF03807 F420_oxidored: NADP o 45.8 75 0.0016 24.1 6.0 80 164-266 5-91 (96)
497 TIGR01963 PHB_DH 3-hydroxybuty 45.8 1.9E+02 0.0042 25.4 9.5 77 158-239 3-86 (255)
498 PRK06198 short chain dehydroge 45.8 1.7E+02 0.0036 26.1 9.2 82 154-239 4-92 (260)
499 PRK05717 oxidoreductase; Valid 45.7 1.5E+02 0.0032 26.6 8.8 80 154-241 8-94 (255)
500 COG4798 Predicted methyltransf 45.4 52 0.0011 30.3 5.5 35 154-188 47-83 (238)
No 1
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=100.00 E-value=4.1e-39 Score=286.13 Aligned_cols=182 Identities=34% Similarity=0.603 Sum_probs=151.5
Q ss_pred EEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCH
Q 021116 109 LQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDP 188 (317)
Q Consensus 109 l~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~ 188 (317)
||||+|+|+|++|.+|++..+|||+++|++++||+|+.. ...+.+|||||||||++|+||+|||+.+|++||.|+
T Consensus 1 mRIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~-----~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~ 75 (183)
T PF03602_consen 1 MRIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPR-----NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR 75 (183)
T ss_dssp EE--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H
T ss_pred CEEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhccc-----ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH
Confidence 689999999999999999999999999999999999863 147999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-HHHHHHHHHHcCCcCCCeEEEE
Q 021116 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-~~~~l~~L~~~~lLkpgG~ivv 267 (317)
.++ +.+++|++.+++.++++++.+|+..++.... ....+||+||+||||.... +.++++.+.+..+|+++|+|++
T Consensus 76 ~a~-~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 76 KAI-KIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA---KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHH-HHHHHHHHHHT-GGGEEEEESSHHHHHHHHH---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred HHH-HHHHHHHHHhCCCcceeeeccCHHHHHHhhc---ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 998 9999999999998889999999998886652 1357899999999999887 4999999988899999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
|+...+.+++...+|..+++++||++.++||+
T Consensus 152 E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 183 (183)
T PF03602_consen 152 EHSKKEDLPESPGNWELIKERKYGDTKLSFYQ 183 (183)
T ss_dssp EEETTSSS-SEETTEEEEEEEEETTEEEEEEE
T ss_pred EecCCCCCccCCCCEEEEEEecCCCEEEEEEC
Confidence 99988887777789999999999999999995
No 2
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.7e-38 Score=277.34 Aligned_cols=183 Identities=28% Similarity=0.501 Sum_probs=163.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
.+|||+|+|+|++|.+|++..+|||+++|++++|||+... ...+.+|||+|||||++|+||+|||+.+|++||.|
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~-----~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~ 75 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD-----EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD 75 (187)
T ss_pred CeEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhcccc-----ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC
Confidence 3799999999999999999999999999999999999872 16799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHH--HHHHcCCcCCCeEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMA--QISKSALVGKDSFI 265 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~--~L~~~~lLkpgG~i 265 (317)
.+++ +.+++|++.+++..+.+++..|+..++..+. ..+.||+||+||||.++.++..+. .+.+..||+|++++
T Consensus 76 ~~a~-~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~i 150 (187)
T COG0742 76 RKAV-KILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALI 150 (187)
T ss_pred HHHH-HHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEE
Confidence 9998 9999999999988889999999998877653 223599999999999877744444 33477899999999
Q ss_pred EEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 266 VVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 266 vv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
|+|+.....+++...+|.++++++||.+.+.||..
T Consensus 151 v~E~~~~~~~~~~~~~~~~~r~k~yG~t~l~~y~~ 185 (187)
T COG0742 151 VVEHDKDVELPELPANFELHREKKYGQTKLTFYRR 185 (187)
T ss_pred EEEeCCCcCccccCCCeEEEEEeecCCEEEEEEEe
Confidence 99999888887788999999999999999999974
No 3
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=4.6e-34 Score=254.77 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=162.9
Q ss_pred ccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEE
Q 021116 105 THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV 184 (317)
Q Consensus 105 ~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aV 184 (317)
-+.+++|++|+|+|+++.+|.+..+|||++++++++|++++.. ..+.+|||+|||||.+|++|+++|+.+|++|
T Consensus 5 ~~~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~------~~g~~vLDLfaGsG~lglea~srga~~v~~v 78 (189)
T TIGR00095 5 GSKKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPE------IQGAHLLDVFAGSGLLGEEALSRGAKVAFLE 78 (189)
T ss_pred CCceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHh------cCCCEEEEecCCCcHHHHHHHhCCCCEEEEE
Confidence 3578999999999999999999999999999999999999764 5689999999999999999999999899999
Q ss_pred eCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeE
Q 021116 185 EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSF 264 (317)
Q Consensus 185 Din~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ 264 (317)
|.|+.++ +.+++|++.+++.++++++++|+.+++.... .....||+|++||||....++++++.+....+|+++|+
T Consensus 79 E~~~~a~-~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~---~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~i 154 (189)
T TIGR00095 79 EDDRKAN-QTLKENLALLKSGEQAEVVRNSALRALKFLA---KKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVL 154 (189)
T ss_pred eCCHHHH-HHHHHHHHHhCCcccEEEEehhHHHHHHHhh---ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeE
Confidence 9999998 9999999999998789999999988875432 11234899999999988778888888877789999999
Q ss_pred EEEEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 265 IVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 265 ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++|+.....++.....|.+.++++||++.+.||+
T Consensus 155 iv~E~~~~~~~~~~~~~~~~~~~r~yG~t~~~~~~ 189 (189)
T TIGR00095 155 IVVEEDREPELPPVEAWLSLKRQKKGGVSYLLYYQ 189 (189)
T ss_pred EEEEecCCCCCCCCcCCeEEEEEeecCcEEEEEEC
Confidence 99999877666544567999999999999999984
No 4
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=100.00 E-value=8.4e-33 Score=248.71 Aligned_cols=179 Identities=23% Similarity=0.381 Sum_probs=160.3
Q ss_pred eEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCC
Q 021116 108 LLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMD 187 (317)
Q Consensus 108 il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin 187 (317)
.+||++|+|+|+++.+|.+..+||+++.+++++|+++... ..+.+|||+|||+|.++++++++++.+|++||+|
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~ 85 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD 85 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC
Confidence 4899999999999999998889999999999999999652 3578999999999999999989988899999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+.++ +.+++|++.+++. +++++++|+.+++... ...||+||+||||..+.++++++.|....+|++++++|+
T Consensus 86 ~~a~-~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 86 RAVA-QQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred HHHH-HHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence 9998 9999999999985 5999999998876432 356999999999988888889999987789999999999
Q ss_pred EeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 268 EYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+++..+++++...+|.++++|+||++.++||..
T Consensus 158 e~~~~~~~~~~~~~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 158 ESEVENGLPTVPANWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred EecCCCCcccCCCccEEEEEecCCCEEEEEEEE
Confidence 999887776666779999999999999999985
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.76 E-value=1.1e-17 Score=146.40 Aligned_cols=137 Identities=20% Similarity=0.325 Sum_probs=106.0
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHh
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N 198 (317)
++.+++|.+.++..+.-.+.+.+.+... .+.+|||+|||+|.+++.++.++.. +|+++|+|+.++ +.+++|
T Consensus 3 ~~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n 74 (170)
T PF05175_consen 3 EFITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRN 74 (170)
T ss_dssp EEEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHH
T ss_pred EEEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHH
Confidence 4566777887777777777777777652 5789999999999999998887765 799999999999 999999
Q ss_pred HHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 199 LEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 199 ~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++.+++++ ++++..|+.+.. ..++||+|++|||+..+. .+++++.. .++|+|||.+++..+..
T Consensus 75 ~~~n~~~~-v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a--~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 75 AERNGLEN-VEVVQSDLFEAL--------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQA--RRYLKPGGRLFLVINSH 143 (170)
T ss_dssp HHHTTCTT-EEEEESSTTTTC--------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHH--HHHEEEEEEEEEEEETT
T ss_pred HHhcCccc-cccccccccccc--------cccceeEEEEccchhcccccchhhHHHHHHHH--HHhccCCCEEEEEeecC
Confidence 99999987 999999987653 247899999999987553 23333332 46899999998877755
Q ss_pred CCc
Q 021116 273 TDM 275 (317)
Q Consensus 273 ~~l 275 (317)
...
T Consensus 144 ~~~ 146 (170)
T PF05175_consen 144 LGY 146 (170)
T ss_dssp SCH
T ss_pred CCh
Confidence 543
No 6
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=163.08 Aligned_cols=112 Identities=27% Similarity=0.342 Sum_probs=94.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.|++|||+||.||++++.|+..||++|+.||++..++ ++|++|++.||++ +++.++++|+++++.... ..+.+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~---~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGDRHRFIVGDVFKWLRKAE---RRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCccceeeehhhHHHHHHHHH---hcCCccc
Confidence 4899999999999999999999998999999999999 9999999999996 568999999999998774 2345899
Q ss_pred EEEECCC-CCCc---------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAV---------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||| |... +|.+++.... ++|+|||++++..+..
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~--~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLAL--RLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHH--HHcCCCCEEEEEecCC
Confidence 9999999 5432 2455555544 5999999999877654
No 7
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.73 E-value=2.9e-17 Score=133.22 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=86.8
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
|.+|||+|||+|.+.+.++..+..+++++|+|+.++ +.++.|+..+++.++++++++|+.+....+ ..++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 468999999999999999888866899999999998 999999999999888999999998876333 35789999
Q ss_pred EECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 236 SVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++||||... .+...++.+. ++|++||.+++..+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~--~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAA--RLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHH--HHcCCCeEEEEEeC
Confidence 999999742 1344455544 58999999998764
No 8
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=152.49 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=116.8
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 127 ~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
..+++++|.+.-+-|... ...++|||+|||+|.+++.++++ ...++++||++++++ +.|++|++.|+++
T Consensus 25 ~~~~~~~DaiLL~~~~~~---------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~~nv~ln~l~ 94 (248)
T COG4123 25 CGFRYGTDAILLAAFAPV---------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQRNVALNPLE 94 (248)
T ss_pred CccccccHHHHHHhhccc---------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHHHHHHhCcch
Confidence 355888887654433222 24789999999999999988887 546899999999998 9999999999999
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-------------------HHHHHHHHHHcCCcCCCeEEE
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------YEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------~~~~l~~L~~~~lLkpgG~iv 266 (317)
++++++++|+.++.+... ..+||+|++||||.... +++.++.. ..+|++||.++
T Consensus 95 ~ri~v~~~Di~~~~~~~~-----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a--~~~lk~~G~l~ 167 (248)
T COG4123 95 ERIQVIEADIKEFLKALV-----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAA--AKLLKPGGRLA 167 (248)
T ss_pred hceeEehhhHHHhhhccc-----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHH--HHHccCCCEEE
Confidence 999999999999986542 34699999999997421 23333332 46899999999
Q ss_pred EEeCCCCCccccCCCeEEEEEeecCceEEEEEeechhhh
Q 021116 267 VEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWAQK 305 (317)
Q Consensus 267 v~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~~~~ 305 (317)
+.++... +.++. ..++.-+++-.++.+..|...++
T Consensus 168 ~V~r~er-l~ei~---~~l~~~~~~~k~i~~V~p~~~k~ 202 (248)
T COG4123 168 FVHRPER-LAEII---ELLKSYNLEPKRIQFVYPKIGKA 202 (248)
T ss_pred EEecHHH-HHHHH---HHHHhcCCCceEEEEecCCCCCc
Confidence 9987543 22221 22334456667777776665554
No 9
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.72 E-value=1.5e-16 Score=155.77 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=110.0
Q ss_pred cceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 117 RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 117 ~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
.|.++....+.+ .-+...+++.+++.+..... ...+.+|||+|||+|.+++++++++ .+|++||+|+.++ +.|+
T Consensus 199 ~g~~~~~~~~~F-~Q~n~~~~~~l~~~~~~~l~---~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av-~~a~ 272 (374)
T TIGR02085 199 NDVPLVIRPQSF-FQTNPKVAAQLYATARQWVR---EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAI-ACAQ 272 (374)
T ss_pred CCEEEEECCCcc-ccCCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHH-HHHH
Confidence 355666666555 44556678888876543210 0246799999999999999998877 5799999999999 9999
Q ss_pred HhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 197 PNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 197 ~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+|++.++++ +++++++|+.+++... ..+||+|++||||. +...+.++.+. .++|++++|++|+..+-
T Consensus 273 ~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~-G~~~~~l~~l~---~~~p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 273 QSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRR-GIGKELCDYLS---QMAPKFILYSSCNAQTM 339 (374)
T ss_pred HHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCC-CCcHHHHHHHH---hcCCCeEEEEEeCHHHH
Confidence 999999985 5999999998876432 24699999999985 56677777776 47999999999997643
No 10
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.72 E-value=9e-17 Score=151.94 Aligned_cols=111 Identities=25% Similarity=0.367 Sum_probs=85.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+||.||++++.|+..|+.+|+.||++..++ +++++|++.||++ +++++++.|+++++.... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----KGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----HTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHh----cCCCCC
Confidence 5789999999999999999999999999999999999 9999999999986 679999999999987643 246899
Q ss_pred EEEECCC-CCCc------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAV------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||| |.++ .|.+++..+. ++|+|||++++.+.+.
T Consensus 198 ~IIlDPPsF~k~~~~~~~~y~~L~~~a~--~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 198 LIILDPPSFAKSKFDLERDYKKLLRRAM--KLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEE--SSEESSTCEHHHHHHHHHHHHH--HTEEEEEEEEEEE--T
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHH--HhcCCCCEEEEEcCCc
Confidence 9999999 4332 3556665544 5899999988665543
No 11
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.71 E-value=2.8e-16 Score=148.26 Aligned_cols=142 Identities=18% Similarity=0.169 Sum_probs=110.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|.|..+.+..+. .+||.++.+.+.+++.+... ....+|||+|||+|.+++.++... ..+|+++|+++.++
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al- 151 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQ------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL- 151 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4678888887766 47999999998887765431 123699999999999999887754 35899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------------H
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------------------Y 246 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------------------~ 246 (317)
+.|++|++.+++.++++++++|+.+.+ ...+||+|++||||.... +
T Consensus 152 ~~a~~n~~~~~~~~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~ 223 (284)
T TIGR00536 152 AVAEENAEKNQLEHRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNIL 223 (284)
T ss_pred HHHHHHHHHcCCCCcEEEEECchhccC--------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHH
Confidence 999999999998777999999987643 123799999999996431 1
Q ss_pred HHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 247 EVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 247 ~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
..+++. ..++|++||+++++....+
T Consensus 224 ~~ii~~--a~~~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 224 RQIIEL--APDYLKPNGFLVCEIGNWQ 248 (284)
T ss_pred HHHHHH--HHHhccCCCEEEEEECccH
Confidence 122222 2368999999999998653
No 12
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.71 E-value=4.3e-16 Score=144.85 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=104.5
Q ss_pred eecceEEecCCCCC-CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGMD-VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~~-~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
.|+|.++.+.++.+ +|+.++.+.+.+.+++... ....+|||+|||+|.+++.+++. +..+|+++|+|+.++
T Consensus 51 ~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al- 123 (251)
T TIGR03704 51 EFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPR------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV- 123 (251)
T ss_pred eEcCeEEEECCCCcCCCccHHHHHHHHHHhhccc------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-
Confidence 46788898887765 5777888777777665431 23458999999999999987754 335799999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----------H------------HHH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----------Y------------EVL 249 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----------~------------~~~ 249 (317)
+.|++|++.++ ++++++|+.+++... ..++||+|++||||.... + .+.
T Consensus 124 ~~A~~N~~~~~----~~~~~~D~~~~l~~~-----~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~ 194 (251)
T TIGR03704 124 RCARRNLADAG----GTVHEGDLYDALPTA-----LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDV 194 (251)
T ss_pred HHHHHHHHHcC----CEEEEeechhhcchh-----cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHH
Confidence 99999999876 368999987765321 125799999999996311 0 111
Q ss_pred HHHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 250 MAQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 250 l~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
+..+. ..++|++||++++++....
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETSERQ 220 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECcch
Confidence 22222 2469999999999987543
No 13
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.70 E-value=4.8e-16 Score=153.29 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=87.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+|||||.+++.++..|+.+|++||+|+.++ +.|++|++.||+. ++++++++|+.+++..+. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---DRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH---hcCCCCC
Confidence 5789999999999999998888888999999999999 9999999999996 479999999999876542 1235799
Q ss_pred EEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+||+||||.... |.+++... .++|++||++++.
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a--~~lLk~gG~lv~~ 338 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLA--IQLLNPGGILLTF 338 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHH--HHHcCCCeEEEEE
Confidence 999999985432 23333322 3589999988854
No 14
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4e-16 Score=147.32 Aligned_cols=140 Identities=24% Similarity=0.346 Sum_probs=106.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~ 192 (317)
.|.|.++.+..+. .+||.++.+.+++...+.. ...+|||+|||||.+++.++.... .+|+++|+|+.|+
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~--------~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al- 147 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ--------LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL- 147 (280)
T ss_pred eecceeeeeCCCceecCCchHHHHHHHHHhhhh--------cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-
Confidence 5778999887765 5899999988887633322 112799999999999998887654 4899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------H------------HHHH
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------Y------------EVLM 250 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~------------~~~l 250 (317)
++|++|++.+|+ .++.++++|+++-+ .++||+|++||||-... + -+..
T Consensus 148 ~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~ 217 (280)
T COG2890 148 ALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVY 217 (280)
T ss_pred HHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHH
Confidence 999999999998 55677777866543 35899999999996432 1 1122
Q ss_pred HHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 251 AQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 251 ~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
..+. ...+|+++|++++++...+
T Consensus 218 ~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 218 RRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred HHHHHhhHHHcCCCcEEEEEECCCc
Confidence 2222 2368999999999998554
No 15
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.70 E-value=5.6e-16 Score=146.48 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=104.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHH-HHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVV 191 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~-~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al 191 (317)
.|.|..+.+..+. ..||.++.+....+. ++.. ..+.+|||+|||+|.+++.+++.. ..+|+++|+|+.++
T Consensus 86 ~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al 158 (284)
T TIGR03533 86 WFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEP-------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL 158 (284)
T ss_pred eecCcEEEECCCCccCCCchHHHHHHHHHHHhcc-------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 3558888887665 467766665555443 3322 235789999999999999888753 34899999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------------
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------------- 245 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------------- 245 (317)
+.|++|++.+++.++++++++|+.+.+ ...+||+|++||||....
T Consensus 159 -~~A~~n~~~~~~~~~i~~~~~D~~~~~--------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 159 -AVAEINIERHGLEDRVTLIQSDLFAAL--------PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred -HHHHHHHHHcCCCCcEEEEECchhhcc--------CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 999999999999878999999986543 135799999999996421
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..++..+ .++|++||+++++....
T Consensus 230 ~~~il~~a--~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 230 VRRILAEA--ADHLNENGVLVVEVGNS 254 (284)
T ss_pred HHHHHHHH--HHhcCCCCEEEEEECcC
Confidence 11222222 36899999999998753
No 16
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.69 E-value=4.4e-16 Score=137.93 Aligned_cols=124 Identities=16% Similarity=0.108 Sum_probs=106.7
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.|...++...++.|.. .++.+++|+|||||++++|++..+ ..+|+++|.|++++ +..++|++++|++ +++
T Consensus 17 ~TK~EIRal~ls~L~~-------~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~~-n~~ 87 (187)
T COG2242 17 MTKEEIRALTLSKLRP-------RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGVD-NLE 87 (187)
T ss_pred CcHHHHHHHHHHhhCC-------CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCC-cEE
Confidence 4889999999999986 578999999999999999987544 45899999999999 9999999999975 599
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
++.+|+.+.+... .+||.||+.. ...++.+++.+.+ .|++||++++....-+++
T Consensus 88 vv~g~Ap~~L~~~-------~~~daiFIGG---g~~i~~ile~~~~--~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 88 VVEGDAPEALPDL-------PSPDAIFIGG---GGNIEEILEAAWE--RLKPGGRLVANAITLETL 141 (187)
T ss_pred EEeccchHhhcCC-------CCCCEEEECC---CCCHHHHHHHHHH--HcCcCCeEEEEeecHHHH
Confidence 9999999988532 3799999984 3688899988765 799999999998876654
No 17
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6e-16 Score=146.62 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=115.1
Q ss_pred eeeeccccccccc-ccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHH
Q 021116 92 LVVSDEKSQEERT-THRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVG 170 (317)
Q Consensus 92 ~~~~~~~~~~p~~-~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~ 170 (317)
....+.....|.. ....+++..|. ..|.+++||+....+++-+.+ .++.+|||+|||||.++
T Consensus 115 f~I~Psw~~~~~~~~~~~i~lDPGl--------AFGTG~HpTT~lcL~~Le~~~---------~~g~~vlDvGcGSGILa 177 (300)
T COG2264 115 FVIVPSWREYPEPSDELNIELDPGL--------AFGTGTHPTTSLCLEALEKLL---------KKGKTVLDVGCGSGILA 177 (300)
T ss_pred EEECCCCccCCCCCCceEEEEcccc--------ccCCCCChhHHHHHHHHHHhh---------cCCCEEEEecCChhHHH
Confidence 5666665444444 45556676665 356789999998777765544 35899999999999999
Q ss_pred HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHH
Q 021116 171 IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLM 250 (317)
Q Consensus 171 Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l 250 (317)
|.+++.|+.+|+++|+||.|+ +.|++|++.|++...++.-..+..... ..++||+|++|- +.+.+
T Consensus 178 IAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~~~~~~~~~~~~~~--------~~~~~DvIVANI------LA~vl 242 (300)
T COG2264 178 IAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVELLVQAKGFLLLEVP--------ENGPFDVIVANI------LAEVL 242 (300)
T ss_pred HHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCchhhhcccccchhhc--------ccCcccEEEehh------hHHHH
Confidence 999999999999999999999 999999999999742223333333322 136899999983 33333
Q ss_pred HHHHH--cCCcCCCeEEEEEeCCCCCccc-----cCCCeEEEEEe
Q 021116 251 AQISK--SALVGKDSFIVVEYPLRTDMLD-----TCGCLVKIKDR 288 (317)
Q Consensus 251 ~~L~~--~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~~~r 288 (317)
..|.. .+.++|||+++++--..+.... ...+|.+.+..
T Consensus 243 ~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 243 VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 33321 3689999999998655443221 12567665543
No 18
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.2e-15 Score=142.38 Aligned_cols=225 Identities=13% Similarity=0.150 Sum_probs=149.0
Q ss_pred eeeeeeccccccccceEEeeccCCCCCChHHHHHHHHHcCCCCCCc-ccCCChhhhhhhh---ccCCc----------ee
Q 021116 28 FSTSFTKPISQKRYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE---GRGSK----------LV 93 (317)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~---~~~g~----------~~ 93 (317)
+.++...+.. ..-++.-+.|.+.+.+...++++|..-.-+-.++ +|+....-++... .-.+- ..
T Consensus 27 ~~~~~~~~~~--~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~~~a~~~~~~ 104 (300)
T COG2813 27 FLVAPADAPD--DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKTDSARHCMRL 104 (300)
T ss_pred cccccccccC--CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCccccchHhhccee
Confidence 3333444444 6678899999999999999999999988888777 6666654333222 11111 11
Q ss_pred eecccccccccccceEEEEeeee--cceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHH
Q 021116 94 VSDEKSQEERTTHRLLQVLGGKA--RRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGI 171 (317)
Q Consensus 94 ~~~~~~~~p~~~~~il~ii~G~~--~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~I 171 (317)
..-.+..++..... .+.... ...++.+.+|.+-+-..|.=-+.+...+.. ..+.+|||+|||.|.+|+
T Consensus 105 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~ 174 (300)
T COG2813 105 HYYSENPPPFADEP---EWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGL 174 (300)
T ss_pred EeecCCCCcccchh---hhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHH
Confidence 11111111111111 001111 234666777777666666656666666654 234599999999999999
Q ss_pred HHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--HHH
Q 021116 172 EAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--YEV 248 (317)
Q Consensus 172 eaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--~~~ 248 (317)
.+++.. ..+++.+|+|..|+ +.+|+|++.|++++. .++..|+.+-. .++||.|++||||+.+. ...
T Consensus 175 ~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v~~~ 243 (300)
T COG2813 175 VLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVWASNLYEPV---------EGKFDLIISNPPFHAGKAVVHS 243 (300)
T ss_pred HHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEEEecccccc---------cccccEEEeCCCccCCcchhHH
Confidence 988865 56899999999999 999999999999864 67888876643 24899999999998752 121
Q ss_pred HH-HHHH-HcCCcCCCeEEEEEeCCCCCc
Q 021116 249 LM-AQIS-KSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 249 ~l-~~L~-~~~lLkpgG~ivv~~~~~~~l 275 (317)
+- +++. +.+.|++||.+++..+..-.+
T Consensus 244 ~~~~~i~~A~~~L~~gGeL~iVan~~l~y 272 (300)
T COG2813 244 LAQEIIAAAARHLKPGGELWIVANRHLPY 272 (300)
T ss_pred HHHHHHHHHHHhhccCCEEEEEEcCCCCh
Confidence 11 2222 347899999999988844443
No 19
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=2e-15 Score=144.32 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=104.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHH-HHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFD-ILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVV 191 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~-~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al 191 (317)
.|.|..+.+.++. ..||.++.+....+. ++.. ....+|||+|||+|.+++.++... ..+|+++|+|+.++
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al 170 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL 170 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 3568888887665 467766665555543 3322 123689999999999999887653 45899999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c-------------------------
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D------------------------- 245 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~------------------------- 245 (317)
+.|++|++.+++.++++++++|+.+.+. ..+||+|++||||... .
T Consensus 171 -~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~ 241 (307)
T PRK11805 171 -AVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDL 241 (307)
T ss_pred -HHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHH
Confidence 9999999999988789999999866431 3579999999999632 1
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..++..+ .++|+|||+++++....
T Consensus 242 ~~~i~~~a--~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 242 VRRILAEA--PDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHHHHHH--HHhcCCCCEEEEEECcC
Confidence 12223322 36899999999998754
No 20
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.67 E-value=1.6e-15 Score=147.94 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=104.4
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N 198 (317)
.++..+.+.++++-. .+.+.+++++..... ..+.+|||+|||+|.+++ ++++++.+|++||+++.++ +.|++|
T Consensus 175 ~~~~~~~~sF~Q~N~-~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai-~~a~~N 247 (362)
T PRK05031 175 FIYRQVENSFTQPNA-AVNEKMLEWALDATK----GSKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSV-AAAQYN 247 (362)
T ss_pred EEEEeCCCCeeccCH-HHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHH-HHHHHH
Confidence 355555555655543 356677776654310 123579999999999999 5556677999999999999 999999
Q ss_pred HHHhCCCCceEEEEecHHHHHHHHhhhcC---------CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 199 LEWTGFLDVSSIHTVRVETFLERAEQFVG---------KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 199 ~~~~gl~~~v~ii~gD~~~~l~~~~~~~~---------~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++.++++ +++++.+|+.+++..+.+... ....||+||+|||| .+..+++++.|. ++++++|++|
T Consensus 248 ~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~-----~~~~ivyvSC 320 (362)
T PRK05031 248 IAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ-----AYERILYISC 320 (362)
T ss_pred HHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH-----ccCCEEEEEe
Confidence 9999986 599999999998765321000 01258999999998 467788888875 3689999999
Q ss_pred CCCC
Q 021116 270 PLRT 273 (317)
Q Consensus 270 ~~~~ 273 (317)
+..+
T Consensus 321 ~p~t 324 (362)
T PRK05031 321 NPET 324 (362)
T ss_pred CHHH
Confidence 9743
No 21
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.66 E-value=4.2e-15 Score=142.21 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=103.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
|..+....+.++. +...+.+.+++.+..... ..++.+|||+|||+|.+++.+++.+ .+|+++|+++.++ +.|++
T Consensus 140 ~~~~~~~~~sF~Q-~n~~~~~~l~~~v~~~l~---~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av-~~A~~ 213 (315)
T PRK03522 140 GVPLFIRPQSFFQ-TNPAVAAQLYATARDWVR---ELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAI-ACAKQ 213 (315)
T ss_pred CEEEEECCCeeee-cCHHHHHHHHHHHHHHHH---hcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHH-HHHHH
Confidence 4455555544433 333344555543322100 0346899999999999999998887 5899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|++.+++ ++++++++|+.++.... .+.||+|++|||+. +....+++.+. .+.+++++|++|+..+...
T Consensus 214 n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~-G~~~~~~~~l~---~~~~~~ivyvsc~p~t~~r 281 (315)
T PRK03522 214 SAAELGL-TNVQFQALDSTQFATAQ------GEVPDLVLVNPPRR-GIGKELCDYLS---QMAPRFILYSSCNAQTMAK 281 (315)
T ss_pred HHHHcCC-CceEEEEcCHHHHHHhc------CCCCeEEEECCCCC-CccHHHHHHHH---HcCCCeEEEEECCcccchh
Confidence 9999998 46999999998876422 24699999999975 44456666665 3688999999999876543
No 22
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.66 E-value=1e-15 Score=160.82 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=91.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++++|||+|||||.+++.+++.|+.+|++||+|+.++ +.|++|++.||+. ++++++++|+.+++... .++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcC
Confidence 5789999999999999999998888999999999999 9999999999997 67999999999987543 36899
Q ss_pred EEEECCCCCCc------------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAV------------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~------------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+||+||||... .|.+++..+. ++|+|||++++++...
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~--~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAK--RLLRPGGTLYFSNNKR 659 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHH--HHcCCCCEEEEEeCCc
Confidence 99999998532 2344444433 5899999999887754
No 23
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.66 E-value=2.3e-15 Score=152.76 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=111.3
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcC---------------CCCC--CCCCCeEEEECCCcchHHHHHHHc
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAG---------------GCPA--SLRPGRWLDLYSGTGSVGIEAISR 176 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~---------------~~~~--~~~~~rVLDlgcGtG~l~Ieaas~ 176 (317)
.|.|..+.+..+. ..||.|+.+.+.+.+.+.... .+.. ..++.+|||+|||||.+++.+++.
T Consensus 80 ~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 80 EFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred EEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence 5789999998776 589999999998877653100 0000 113468999999999999987754
Q ss_pred -CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------
Q 021116 177 -GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------- 245 (317)
Q Consensus 177 -Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------- 245 (317)
...+|+++|+|+.++ +.|++|++.+++.++++++++|+.+.+ ..++||+|++||||....
T Consensus 160 ~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v~~~~~D~~~~~--------~~~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 160 LPNANVIATDISLDAI-EVAKSNAIKYEVTDRIQIIHSNWFENI--------EKQKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred CCCCeEEEEECCHHHH-HHHHHHHHHcCCccceeeeecchhhhC--------cCCCccEEEECCCCCCchhhhhcCchhh
Confidence 445899999999999 999999999998888999999986543 135799999999997421
Q ss_pred -HH------------HHHHHHH--HcCCcCCCeEEEEEeCCCC
Q 021116 246 -YE------------VLMAQIS--KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 246 -~~------------~~l~~L~--~~~lLkpgG~ivv~~~~~~ 273 (317)
++ +....+. ..++|+|||+++++....+
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q 273 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ 273 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch
Confidence 10 1112222 2368999999999987543
No 24
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.66 E-value=3.5e-15 Score=147.27 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=107.9
Q ss_pred EEEEee-eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEe
Q 021116 109 LQVLGG-KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVE 185 (317)
Q Consensus 109 l~ii~G-~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVD 185 (317)
-+|++- .|.|.++.+.++. .+||.++.+.+.+.+.+. ++.+|||+|||||.+++.++.. ...+|+++|
T Consensus 212 qYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 212 AYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---------ENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred eeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 344332 4679999886655 589999999888876653 3569999999999999987654 456899999
Q ss_pred CCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc--------------------
Q 021116 186 MDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------------- 245 (317)
Q Consensus 186 in~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------------- 245 (317)
+|+.++ +.|++|++.++. +++++++|+.+.... ..++||+|++||||....
T Consensus 283 iS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG 353 (423)
T PRK14966 283 ISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDF 353 (423)
T ss_pred CCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCC
Confidence 999999 999999998875 589999998653210 125799999999995321
Q ss_pred ------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 ------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..+++.+ .++|+|||++++|....
T Consensus 354 ~dGL~~yr~Ii~~a--~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 354 SDGLSCIRTLAQGA--PDRLAEGGFLLLEHGFD 384 (423)
T ss_pred CchHHHHHHHHHHH--HHhcCCCcEEEEEECcc
Confidence 12222222 35899999999998764
No 25
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.65 E-value=1.6e-16 Score=151.00 Aligned_cols=169 Identities=19% Similarity=0.238 Sum_probs=110.7
Q ss_pred ceeeecccccccc-cccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchH
Q 021116 91 KLVVSDEKSQEER-TTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV 169 (317)
Q Consensus 91 ~~~~~~~~~~~p~-~~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l 169 (317)
+....+.....|. .....+.|..|. ..|.+++|||....+.+-... .++++|||+|||||.+
T Consensus 113 ~~~I~P~w~~~~~~~~~~~I~idPg~--------AFGTG~H~TT~lcl~~l~~~~---------~~g~~vLDvG~GSGIL 175 (295)
T PF06325_consen 113 RLVIVPSWEEYPEPPDEIVIEIDPGM--------AFGTGHHPTTRLCLELLEKYV---------KPGKRVLDVGCGSGIL 175 (295)
T ss_dssp TEEEEETT----SSTTSEEEEESTTS--------SS-SSHCHHHHHHHHHHHHHS---------STTSEEEEES-TTSHH
T ss_pred cEEEECCCcccCCCCCcEEEEECCCC--------cccCCCCHHHHHHHHHHHHhc---------cCCCEEEEeCCcHHHH
Confidence 3566666444444 333345555543 355678999998887775553 3578999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHH
Q 021116 170 GIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVL 249 (317)
Q Consensus 170 ~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~ 249 (317)
+|.|++.|+++|+++|+||.++ +.|++|++.||+.+++.+. ...+. ..++||+|++|- ....+..+
T Consensus 176 aiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI--~~~vL~~l 241 (295)
T PF06325_consen 176 AIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANI--LADVLLEL 241 (295)
T ss_dssp HHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES---HHHHHHH
T ss_pred HHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECC--CHHHHHHH
Confidence 9999999999999999999999 9999999999999877553 11111 137899999983 11112222
Q ss_pred HHHHHHcCCcCCCeEEEEEeCCCCCccc----cCCCeEEEEEeecCc
Q 021116 250 MAQISKSALVGKDSFIVVEYPLRTDMLD----TCGCLVKIKDRRFGR 292 (317)
Q Consensus 250 l~~L~~~~lLkpgG~ivv~~~~~~~l~~----~~~~~~~~~~r~yG~ 292 (317)
...+. ++|+|||+++++--..+...+ ...+|.+.+.+.-|+
T Consensus 242 ~~~~~--~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~ 286 (295)
T PF06325_consen 242 APDIA--SLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGE 286 (295)
T ss_dssp HHHCH--HHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETT
T ss_pred HHHHH--HhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECC
Confidence 22222 479999999998655444322 123777766655443
No 26
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.64 E-value=2.9e-15 Score=149.57 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=107.3
Q ss_pred ecceEEecCCCCCCCC---ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHH
Q 021116 116 ARRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVS 192 (317)
Q Consensus 116 ~~G~~l~~p~~~~~rp---t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~ 192 (317)
+.|..+....+.+... .++.+.+.+.+++.. .++.+|||+|||+|.+++.++..+ .+|+++|+|+.++
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~-------~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al- 332 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP-------QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMV- 332 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC-------CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHH-
Confidence 4566777666655433 345566666666643 357899999999999999888776 5899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.|++|++.+++.+ ++++++|+.+.+... +..+.+||+|++||||.. ..+.++.+. .+++++++|++|+..
T Consensus 333 ~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~---~~~~~~fD~Vi~dPPr~g--~~~~~~~l~---~~~~~~ivyvSCnp~ 403 (443)
T PRK13168 333 ERARENARRNGLDN-VTFYHANLEEDFTDQ---PWALGGFDKVLLDPPRAG--AAEVMQALA---KLGPKRIVYVSCNPA 403 (443)
T ss_pred HHHHHHHHHcCCCc-eEEEEeChHHhhhhh---hhhcCCCCEEEECcCCcC--hHHHHHHHH---hcCCCeEEEEEeChH
Confidence 99999999999864 999999998765321 011357999999999964 345667765 379999999999876
Q ss_pred CC
Q 021116 273 TD 274 (317)
Q Consensus 273 ~~ 274 (317)
+-
T Consensus 404 tl 405 (443)
T PRK13168 404 TL 405 (443)
T ss_pred Hh
Confidence 53
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=3.4e-15 Score=146.35 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=102.7
Q ss_pred eEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHH
Q 021116 119 KKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~ 197 (317)
..+....|.+-+-..+.=.+.+.+.+.. ..+.+|||+|||+|.+++.+++++ ..+|+++|+|+.|+ +.|++
T Consensus 199 ~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~ 270 (378)
T PRK15001 199 WTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRL 270 (378)
T ss_pred EEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHH
Confidence 4556667776666666555566555543 234699999999999999988765 45899999999999 99999
Q ss_pred hHHHhCCC--CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 198 NLEWTGFL--DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 198 N~~~~gl~--~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
|++.|+.. ++++++.+|+.+.+ ...+||+|++||||+.+. .....+.+. ..+.|++||.+++..+.
T Consensus 271 N~~~n~~~~~~~v~~~~~D~l~~~--------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 271 NVETNMPEALDRCEFMINNALSGV--------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred HHHHcCcccCceEEEEEccccccC--------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 99988754 36889989876532 135799999999998642 121222232 24689999999999875
Q ss_pred CCCc
Q 021116 272 RTDM 275 (317)
Q Consensus 272 ~~~l 275 (317)
...+
T Consensus 343 ~l~y 346 (378)
T PRK15001 343 HLDY 346 (378)
T ss_pred CcCH
Confidence 5443
No 28
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.63 E-value=5.4e-15 Score=143.83 Aligned_cols=139 Identities=18% Similarity=0.143 Sum_probs=102.2
Q ss_pred eEEecCCCCCCCCCh---HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 021116 119 KKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL 195 (317)
Q Consensus 119 ~~l~~p~~~~~rpt~---~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a 195 (317)
.++..+.+.+.++-. +.+.+.+.+++.. .+.+|||+|||+|.+++ ++++++.+|++||++++++ +.|
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~--------~~~~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av-~~a 235 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQG--------SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSV-NAA 235 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhc--------CCCcEEEEeccccHHHH-HHHHhCCEEEEEECCHHHH-HHH
Confidence 456666666654443 4455555555532 23479999999999999 5555567899999999999 999
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhh---h------cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQ---F------VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~---~------~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
++|++.+++++ ++++++|+.+++....+ + +.....||+||+|||+ .+..+++++.+. ++++++|
T Consensus 236 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~-----~~~~ivY 308 (353)
T TIGR02143 236 QYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQ-----AYERILY 308 (353)
T ss_pred HHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHH-----cCCcEEE
Confidence 99999999865 99999999998754210 0 0001248999999995 566778888774 4799999
Q ss_pred EEeCCCCC
Q 021116 267 VEYPLRTD 274 (317)
Q Consensus 267 v~~~~~~~ 274 (317)
++|+..+-
T Consensus 309 vsC~p~tl 316 (353)
T TIGR02143 309 ISCNPETL 316 (353)
T ss_pred EEcCHHHH
Confidence 99997653
No 29
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.62 E-value=1.3e-14 Score=137.28 Aligned_cols=187 Identities=18% Similarity=0.174 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCCCCCcccCCChhhhhhhhc---------cCCc-eeeeccc-ccccccccceEEEEeeeecceEEecCC
Q 021116 57 EDKKELLKRYGLDPDEFLSEPSPKTRRRKEG---------RGSK-LVVSDEK-SQEERTTHRLLQVLGGKARRKKLLSPK 125 (317)
Q Consensus 57 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~---------~~g~-~~~~~~~-~~~p~~~~~il~ii~G~~~G~~l~~p~ 125 (317)
+.....|..+|++.+...-...-.+++.|+. .+|. ....+.. .++|......+.+..|. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~--------aF 138 (288)
T TIGR00406 67 NSVIPLLEAFCLDLGRNHKIEFDEFSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGL--------AF 138 (288)
T ss_pred HHHHHHHHhcccCCCcceeEEeecchhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCC--------cc
Confidence 4456777788887753211111112466662 3332 4444442 23332233334444443 34
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 126 GMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 126 ~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
+..++||+....+.+-... .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.|++|++.+++.
T Consensus 139 gtG~h~tt~l~l~~l~~~~---------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~ 208 (288)
T TIGR00406 139 GTGTHPTTSLCLEWLEDLD---------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVS 208 (288)
T ss_pred cCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCC
Confidence 4467888887665543321 35789999999999999998888888999999999999 9999999999998
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+++.+..+|.... ..++||+|++|... ..+..++..+. ++|+|||+++++......
T Consensus 209 ~~~~~~~~~~~~~---------~~~~fDlVvan~~~--~~l~~ll~~~~--~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 209 DRLQVKLIYLEQP---------IEGKADVIVANILA--EVIKELYPQFS--RLVKPGGWLILSGILETQ 264 (288)
T ss_pred cceEEEecccccc---------cCCCceEEEEecCH--HHHHHHHHHHH--HHcCCCcEEEEEeCcHhH
Confidence 7777777763321 13689999998632 23344555544 589999999997654443
No 30
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.62 E-value=7.6e-15 Score=142.30 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=132.2
Q ss_pred ccceEEeeccCCCCCChHHHHHHHHHcCCCCCCc-ccCCChhhhhhhh--ccCCc-----------eeeecccccccccc
Q 021116 40 RYPLIVFSYKSGTGLTSEDKKELLKRYGLDPDEF-LSEPSPKTRRRKE--GRGSK-----------LVVSDEKSQEERTT 105 (317)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~--~~~g~-----------~~~~~~~~~~p~~~ 105 (317)
...+|.-+-|..-+.+.-.+.+.+..-.-+-.++ +|+...+-+.... ...+. +..+..+.. |.
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~-~~-- 152 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQ-PV-- 152 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhcCccccccceeEEEEEEecccc-CC--
Confidence 4566777777777776666666555544444333 6766653322111 01111 111111111 10
Q ss_pred cceEE-EEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CEEEE
Q 021116 106 HRLLQ-VLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC-SEVHF 183 (317)
Q Consensus 106 ~~il~-ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~a 183 (317)
..... ...-.+.+..+...++.+.++..+.-.+.+++.+.. ....+|||+|||+|.+++.+++++. .+|++
T Consensus 153 ~~~~~~~~~y~~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~ 225 (342)
T PRK09489 153 FDADKFWKEYQVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTL 225 (342)
T ss_pred CcccccceeeecCCEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEE
Confidence 00000 000012245667777777666665555556565543 2345899999999999998887653 57999
Q ss_pred EeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cH---HHHHHHHHHcC
Q 021116 184 VEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DY---EVLMAQISKSA 257 (317)
Q Consensus 184 VDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~---~~~l~~L~~~~ 257 (317)
+|+|+.++ +.+++|++.+++. .+++.+|+.... .++||+|++||||+.+ .+ +.++... .+
T Consensus 226 vDis~~Al-~~A~~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a--~~ 291 (342)
T PRK09489 226 SDVSAAAL-ESSRATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGA--VR 291 (342)
T ss_pred EECCHHHH-HHHHHHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCCccccHHHHHHHHHHH--HH
Confidence 99999999 9999999999885 467888876532 3689999999999753 22 3333333 36
Q ss_pred CcCCCeEEEEEeCCCCCcc
Q 021116 258 LVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 258 lLkpgG~ivv~~~~~~~l~ 276 (317)
.|+|||.+++..+....++
T Consensus 292 ~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 292 HLNSGGELRIVANAFLPYP 310 (342)
T ss_pred hcCcCCEEEEEEeCCCChH
Confidence 8999999999888655443
No 31
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.5e-15 Score=133.20 Aligned_cols=78 Identities=31% Similarity=0.393 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+++..|+|+|||||.+++.++..|+.+|++||+|++++ +.+++|+..++ ++++++.+|+.++ ...+|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~--g~v~f~~~dv~~~----------~~~~d 110 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELL--GDVEFVVADVSDF----------RGKFD 110 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhC--CceEEEEcchhhc----------CCccc
Confidence 67889999999999999999999999999999999999 99999999843 4599999999887 37899
Q ss_pred EEEECCCCCCc
Q 021116 234 YMSVTPPYTAV 244 (317)
Q Consensus 234 lV~~dPPy~~~ 244 (317)
.|++||||+..
T Consensus 111 tvimNPPFG~~ 121 (198)
T COG2263 111 TVIMNPPFGSQ 121 (198)
T ss_pred eEEECCCCccc
Confidence 99999999853
No 32
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=9.1e-15 Score=145.56 Aligned_cols=139 Identities=21% Similarity=0.184 Sum_probs=108.1
Q ss_pred ceEEecCCCCCCCCCh---HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMM---EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNV 194 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~---~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ 194 (317)
+..+..+...++.+.. +.+...+.++++. .+++++||+|||.|++++.++.+ ..+|++||+++.++ +.
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~ 330 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EA 330 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh-------cCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HH
Confidence 3455555555655544 3344445555554 35789999999999999977654 56899999999999 99
Q ss_pred HHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 195 LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 195 ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|++|++.||+.| +++..+|++++..... ....+|.|++|||+. +.-+++++.+. .++|..++|++|+..+-
T Consensus 331 A~~NA~~n~i~N-~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~-G~~~~~lk~l~---~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 331 AQENAAANGIDN-VEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRA-GADREVLKQLA---KLKPKRIVYVSCNPATL 401 (432)
T ss_pred HHHHHHHcCCCc-EEEEeCCHHHHhhhcc----ccCCCCEEEECCCCC-CCCHHHHHHHH---hcCCCcEEEEeCCHHHH
Confidence 999999999987 9999999999986541 235789999999975 45567888886 48999999999997653
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=3e-15 Score=120.20 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++++++ ....+|++||+|+.++ +.|++|+...+..++++++++|+ ..... ..+.||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~------~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPD------FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTT------TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcc------cCCCCC
Confidence 368999999999999999888 2445799999999999 99999997788888999999999 32211 236799
Q ss_pred EEEECCCCCC---c---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVTPPYTA---V---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~dPPy~~---~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+++. +.. . ...+.++.+. ++|+|||+++++.
T Consensus 73 ~v~~~~-~~~~~~~~~~~~~~~l~~~~--~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSG-FTLHFLLPLDERRRVLERIR--RLLKPGGRLVINT 111 (112)
T ss_dssp EEEECS-GSGGGCCHHHHHHHHHHHHH--HHEEEEEEEEEEE
T ss_pred EEEECC-CccccccchhHHHHHHHHHH--HhcCCCcEEEEEE
Confidence 999986 311 1 1234455554 4899999999875
No 34
>PRK14967 putative methyltransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=131.09 Aligned_cols=135 Identities=22% Similarity=0.293 Sum_probs=96.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
|..+.++++.+ +|..+. +.+.+.+.... ..++.+|||+|||+|.+++.++..++.+|+++|+|+.++ +.+++
T Consensus 6 ~~~~~~~~g~~-~p~~ds--~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~ 77 (223)
T PRK14967 6 PDALLRAPGVY-RPQEDT--QLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARL 77 (223)
T ss_pred CceeecCCCCc-CCCCcH--HHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHH
Confidence 44555666544 665442 22333343211 135689999999999999988887766899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------------------HHHHHHHHHH
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------------------YEVLMAQISK 255 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------------------~~~~l~~L~~ 255 (317)
|++.+++ +++++++|+.+.+ ..++||+|++||||.... ++.+++.+
T Consensus 78 n~~~~~~--~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-- 145 (223)
T PRK14967 78 NALLAGV--DVDVRRGDWARAV--------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAA-- 145 (223)
T ss_pred HHHHhCC--eeEEEECchhhhc--------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHH--
Confidence 9999887 3789999987643 136899999999987421 12223322
Q ss_pred cCCcCCCeEEEEEeCCC
Q 021116 256 SALVGKDSFIVVEYPLR 272 (317)
Q Consensus 256 ~~lLkpgG~ivv~~~~~ 272 (317)
.++|++||++++..+..
T Consensus 146 ~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 146 PALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHhcCCCcEEEEEEecc
Confidence 36899999999876654
No 35
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.61 E-value=7.4e-15 Score=141.26 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=123.2
Q ss_pred hhhhhhccCCceee--e-cccccccccccceEEEEeeeec-ceEEecCCCC-----------CCC--CChHHHHHHHHHH
Q 021116 81 TRRRKEGRGSKLVV--S-DEKSQEERTTHRLLQVLGGKAR-RKKLLSPKGM-----------DVR--PMMEVVKGAAFDI 143 (317)
Q Consensus 81 ~~~~~~~~~g~~~~--~-~~~~~~p~~~~~il~ii~G~~~-G~~l~~p~~~-----------~~r--pt~~~v~~alf~~ 143 (317)
+...+|+.+|..+. + ..++.+|.....+.. ..+.+. |..+....+. ... +....++.++.++
T Consensus 99 ~~~~~~~~ig~~i~~~g~~v~l~~Pd~~i~v~~-~~~~~~~g~~~~~~~~~~~~~~~~~~R~~~~~~~l~~~la~~~~~l 177 (329)
T TIGR01177 99 DKARLERKIGAILKKKGFKVSLRRPDIVVRVVI-TEDIFYLGRVLEERDKEQFIERKPDRRPFFKPGSMDPKLARAMVNL 177 (329)
T ss_pred CHHHHHHHHHHHHHhcCCccccCCCCeEEEEEE-ECCeEEEEEEeeecchhhhhhcCcccCCccCCCCCCHHHHHHHHHH
Confidence 34555554544332 2 457788877765542 233332 4433211100 112 2345677777776
Q ss_pred HhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh
Q 021116 144 LQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 144 L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~ 223 (317)
+.. .++.+|||+|||||.+.++++..|+ +|+++|+|+.++ +.++.|++.+|+.+ ++++++|+.+..
T Consensus 178 ~~~-------~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~~l~---- 243 (329)
T TIGR01177 178 ARV-------TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDATKLP---- 243 (329)
T ss_pred hCC-------CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchhcCC----
Confidence 643 3678999999999999999888775 699999999999 99999999999976 889999987642
Q ss_pred hhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCcccc--CCCe
Q 021116 224 QFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDT--CGCL 282 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~--~~~~ 282 (317)
...+.||+|++||||+... +.++++.+. ++|+|||++++..+....+... ..+|
T Consensus 244 ---~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~--r~Lk~gG~lv~~~~~~~~~~~~~~~~g~ 309 (329)
T TIGR01177 244 ---LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFH--EVLKSEGWIVYAVPTRIDLESLAEDAFR 309 (329)
T ss_pred ---cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHH--HHccCCcEEEEEEcCCCCHHHHHhhcCc
Confidence 1246899999999997421 344454443 5899999999888766554322 3456
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=9.4e-15 Score=129.58 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCCCCh--HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 128 DVRPMM--EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 128 ~~rpt~--~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.+||++ +.+.+.+++.+.... ...+.+|||+|||+|.+++.++..+ ..+|+++|.|+.++ +.+++|++.+++
T Consensus 17 l~~~~~~~~~~~~~~~d~i~~~~----~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~ 91 (181)
T TIGR00138 17 LTSLKTPEEIWERHILDSLKLLE----YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGL 91 (181)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH----hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCC
Confidence 468888 889999998864321 1458899999999999999876554 45799999999998 999999999998
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.+ ++++++|+.++. ..++||+|+++. ...+++.++.+. ++|+|||++++.+...
T Consensus 92 ~~-i~~i~~d~~~~~--------~~~~fD~I~s~~---~~~~~~~~~~~~--~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 92 NN-VEIVNGRAEDFQ--------HEEQFDVITSRA---LASLNVLLELTL--NLLKVGGYFLAYKGKK 145 (181)
T ss_pred CC-eEEEecchhhcc--------ccCCccEEEehh---hhCHHHHHHHHH--HhcCCCCEEEEEcCCC
Confidence 54 999999998752 136899999986 235666666654 5899999999987644
No 37
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.61 E-value=5.6e-15 Score=141.92 Aligned_cols=139 Identities=24% Similarity=0.255 Sum_probs=106.4
Q ss_pred CCCC--ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 128 DVRP--MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 128 ~~rp--t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
+.+| +..++++++.|.... .+|+.|||+|||||++.+||.-.|+ +|+|+|++..++ +.|+.|+++.|++
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v-------~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv-~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARV-------KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMV-RGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhcc-------ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHH-hhhhhhhhhhCcC
Confidence 3455 347899999999876 5789999999999999999999997 699999999999 9999999999987
Q ss_pred CceEEEEe-cHHHHHHHHhhhcCCCCCccEEEECCCCCCcc----------HHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 206 DVSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD----------YEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 206 ~~v~ii~g-D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~----------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+ ..++.. |+.+.. ..+.++|.|+.||||+... |.+.++.+. ..|++||++++..+....
T Consensus 246 ~-~~~~~~~Da~~lp-------l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~--evLk~gG~~vf~~p~~~~ 315 (347)
T COG1041 246 D-YPVLKVLDATNLP-------LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS--EVLKPGGRIVFAAPRDPR 315 (347)
T ss_pred c-eeEEEecccccCC-------CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHH--HHhhcCcEEEEecCCcch
Confidence 6 566666 887642 2345799999999998531 444455544 599999999998873221
Q ss_pred ccccCCCeEEE
Q 021116 275 MLDTCGCLVKI 285 (317)
Q Consensus 275 l~~~~~~~~~~ 285 (317)
-.....+|.++
T Consensus 316 ~~~~~~~f~v~ 326 (347)
T COG1041 316 HELEELGFKVL 326 (347)
T ss_pred hhHhhcCceEE
Confidence 11123556654
No 38
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.58 E-value=3.2e-14 Score=141.42 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=103.6
Q ss_pred cceEEecCCCCCCCC---ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH
Q 021116 117 RRKKLLSPKGMDVRP---MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 117 ~G~~l~~p~~~~~rp---t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~ 193 (317)
.|.++....+.+... ..+.+.+.+..++.. .++.+|||+|||+|.+++.+++. +.+|+++|+|+.++ +
T Consensus 258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~-------~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~ 328 (431)
T TIGR00479 258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALEL-------QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-E 328 (431)
T ss_pred CCEEEEECCCceeecCHHHHHHHHHHHHHHhcc-------CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-H
Confidence 356666655554333 233344444444432 34689999999999999987765 45899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.|++|++.+++. +++++.+|+.+++.... .....||+|++|||+. +...++++.+. .+++++++|++|+..+
T Consensus 329 ~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~---~~~~~~D~vi~dPPr~-G~~~~~l~~l~---~l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 329 KAQQNAELNGIA-NVEFLAGTLETVLPKQP---WAGQIPDVLLLDPPRK-GCAAEVLRTII---ELKPERIVYVSCNPAT 400 (431)
T ss_pred HHHHHHHHhCCC-ceEEEeCCHHHHHHHHH---hcCCCCCEEEECcCCC-CCCHHHHHHHH---hcCCCEEEEEcCCHHH
Confidence 999999999985 59999999988764321 1235799999999985 44567777765 3789999999998654
No 39
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=3.8e-14 Score=124.45 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=92.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.++. +|+++|+|+.++ +.+++|++.++. +++++.+|+.+.. .++||+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~ 85 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDV 85 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccccc---------CCcccE
Confidence 567899999999999999888876 899999999999 999999998886 3788999976542 258999
Q ss_pred EEECCCCCCcc----------------------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cCCCeEEEEE
Q 021116 235 MSVTPPYTAVD----------------------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TCGCLVKIKD 287 (317)
Q Consensus 235 V~~dPPy~~~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~~~~~~~~~ 287 (317)
|++||||.... +++.++.+ .++|+|||.+++.........+ ...+|.....
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDEL--PEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhH--HHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 99999995321 12233333 3689999999887765542211 1356777666
Q ss_pred eecCc
Q 021116 288 RRFGR 292 (317)
Q Consensus 288 r~yG~ 292 (317)
+.||-
T Consensus 164 ~~~~~ 168 (179)
T TIGR00537 164 AERGL 168 (179)
T ss_pred EEeec
Confidence 66663
No 40
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.58 E-value=1.4e-13 Score=127.54 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=97.5
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 125 KGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 125 ~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
.+..+++|+....+.+...+ .++.+|||+|||+|.+++.+++.|+.+|+++|+|+.++ +.|++|++.+++
T Consensus 98 fgtg~h~tt~~~l~~l~~~~---------~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~ 167 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLV---------LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGV 167 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhc---------CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCC
Confidence 44466788776665554332 35789999999999999988888887899999999999 999999999988
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccc-----cC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLD-----TC 279 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~-----~~ 279 (317)
.+++.+..+| .+||+|++|... ..+..++..+. ++|+|||+++++....+.... ..
T Consensus 168 ~~~~~~~~~~---------------~~fD~Vvani~~--~~~~~l~~~~~--~~LkpgG~lilsgi~~~~~~~v~~~l~~ 228 (250)
T PRK00517 168 ELNVYLPQGD---------------LKADVIVANILA--NPLLELAPDLA--RLLKPGGRLILSGILEEQADEVLEAYEE 228 (250)
T ss_pred CceEEEccCC---------------CCcCEEEEcCcH--HHHHHHHHHHH--HhcCCCcEEEEEECcHhhHHHHHHHHHH
Confidence 6555443332 269999998521 23344455444 589999999998654433221 13
Q ss_pred CCeEEEEEeecCc
Q 021116 280 GCLVKIKDRRFGR 292 (317)
Q Consensus 280 ~~~~~~~~r~yG~ 292 (317)
.+|.+......|+
T Consensus 229 ~Gf~~~~~~~~~~ 241 (250)
T PRK00517 229 AGFTLDEVLERGE 241 (250)
T ss_pred CCCEEEEEEEeCC
Confidence 4566665544443
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=4.9e-14 Score=125.94 Aligned_cols=124 Identities=23% Similarity=0.221 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
.|...++...+..+.. .++.+|||+|||+|.+++++++. + ..+|+++|+++.++ +.+++|++.+++.+++
T Consensus 23 ~t~~~~r~~~l~~l~~-------~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 23 MTKEEIRALALSKLRL-------RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNI 94 (198)
T ss_pred CCHHHHHHHHHHHcCC-------CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCe
Confidence 4667777666665543 46889999999999999988763 3 35899999999998 9999999999976679
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++.+|+.+++... .+.||+||++.. ...+...++.+. +.|+|||+++++....
T Consensus 95 ~~~~~d~~~~l~~~------~~~~D~V~~~~~--~~~~~~~l~~~~--~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 95 VLIKGEAPEILFTI------NEKFDRIFIGGG--SEKLKEIISASW--EIIKKGGRIVIDAILL 148 (198)
T ss_pred EEEEechhhhHhhc------CCCCCEEEECCC--cccHHHHHHHHH--HHcCCCcEEEEEeecH
Confidence 99999998765432 367999999752 235666776655 4899999999865543
No 42
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.57 E-value=3.3e-14 Score=125.87 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=85.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--C--------EEEEEeCCHHHHHHHHHHhH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--S--------EVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~--------~V~aVDin~~al~~~ar~N~ 199 (317)
-|+...++.++.+.... .++..|||+|||||++.||++..+. . +++++|+|++++ +.|++|+
T Consensus 10 a~L~~~lA~~ll~la~~-------~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~ 81 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGW-------RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENL 81 (179)
T ss_dssp TSS-HHHHHHHHHHTT---------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-------CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHH
Confidence 45667788888877654 3678999999999999999876543 2 278999999999 9999999
Q ss_pred HHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---------cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---------DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---------~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+..|+.+.+.+.+.|+.++. ...+.+|.|++||||+.. .|..+++.+. +++++...+++.
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~--~~l~~~~v~l~~ 150 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELP-------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELK--RVLKPRAVFLTT 150 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGG-------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHH--CHSTTCEEEEEE
T ss_pred HhcccCCceEEEecchhhcc-------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHH--HHCCCCEEEEEE
Confidence 99999988999999988764 124689999999999863 1334444443 578884444443
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.57 E-value=8.9e-14 Score=127.04 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=102.0
Q ss_pred ecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHH
Q 021116 116 ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSN 193 (317)
Q Consensus 116 ~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~ 193 (317)
+.+..+....+. ..+|.+..+.+.+.+.+.. .+.+|||+|||+|.+++.++.. ...+++++|+++.++ +
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~--------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~ 125 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK--------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-A 125 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhccc--------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-H
Confidence 445555554443 3577777777777666532 3568999999999999988775 334899999999999 9
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------------------------H
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD---------------------------Y 246 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~---------------------------~ 246 (317)
.+++|++.+++. +++++++|+.+.+ ..++||+|++||||.... +
T Consensus 126 ~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 196 (251)
T TIGR03534 126 VARKNAARLGLD-NVTFLQSDWFEPL--------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFY 196 (251)
T ss_pred HHHHHHHHcCCC-eEEEEECchhccC--------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHH
Confidence 999999999885 5899999987643 246899999999997421 0
Q ss_pred HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 247 EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 247 ~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..+++.+ .++|++||+++++....
T Consensus 197 ~~~i~~~--~~~L~~gG~~~~~~~~~ 220 (251)
T TIGR03534 197 RRIIAQA--PRLLKPGGWLLLEIGYD 220 (251)
T ss_pred HHHHHHH--HHhcccCCEEEEEECcc
Confidence 1222222 36899999999988643
No 44
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=6.5e-14 Score=130.09 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=103.5
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|.|..+.+..+. ..||.++.+.+.+++.+.. .++.+|||+|||+|.+++.++... ..+|+++|+++.++
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~-------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l- 145 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLL-------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL- 145 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHHHHHHHHHhccc-------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4667777665554 4699999888888755433 356799999999999999887754 45899999999999
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc---------------------------
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD--------------------------- 245 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~--------------------------- 245 (317)
+.|++|++ ++..++++++.+|+.+.. ..++||+|++||||....
T Consensus 146 ~~a~~n~~-~~~~~~i~~~~~d~~~~~--------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~ 216 (275)
T PRK09328 146 AVARRNAK-HGLGARVEFLQGDWFEPL--------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDF 216 (275)
T ss_pred HHHHHHHH-hCCCCcEEEEEccccCcC--------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHH
Confidence 99999998 444456999999985432 136899999999996421
Q ss_pred HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+..+++.+ .++|++||++++++...
T Consensus 217 ~~~~~~~~--~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 217 YRRIIEQA--PRYLKPGGWLLLEIGYD 241 (275)
T ss_pred HHHHHHHH--HHhcccCCEEEEEECch
Confidence 11222222 36899999999988643
No 45
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.57 E-value=4.1e-14 Score=126.04 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=99.3
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..++|...++..+++.+.. .++.+|||+|||+|.++++++.. ...+|+++|+|+.++ +.+++|++.+++.
T Consensus 20 ~~p~t~~~v~~~l~~~l~~-------~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~- 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRL-------EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK- 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-
Confidence 3457888888888888754 35789999999999999988754 335899999999999 9999999999985
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+++++.+|+.+.+... ...+|.++++.. ...+.+++.+. ++|+|||++++.....+++
T Consensus 91 ~v~~~~~d~~~~~~~~------~~~~d~v~~~~~---~~~~~~l~~~~--~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 91 NVEVIEGSAPECLAQL------APAPDRVCIEGG---RPIKEILQAVW--QYLKPGGRLVATASSLEGL 148 (196)
T ss_pred CeEEEECchHHHHhhC------CCCCCEEEEECC---cCHHHHHHHHH--HhcCCCeEEEEEeecHHHH
Confidence 5999999997654332 245788888742 24566777665 4799999999988765543
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=5.9e-14 Score=124.01 Aligned_cols=118 Identities=21% Similarity=0.170 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.+.+.++..+++.+.. .++.+|||+|||+|.+++.+++++ ..+|+++|+++.++ +.+++|++.+++. +++
T Consensus 14 ~~~~~~r~~~~~~l~~-------~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i~ 84 (187)
T PRK08287 14 MTKEEVRALALSKLEL-------HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NID 84 (187)
T ss_pred CchHHHHHHHHHhcCC-------CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-CeE
Confidence 5777888888888754 367899999999999999988764 35899999999998 9999999999885 589
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++++|+...+ .++||+|+++... ..+.++++.+. ++|+|||++++...
T Consensus 85 ~~~~d~~~~~---------~~~~D~v~~~~~~--~~~~~~l~~~~--~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 85 IIPGEAPIEL---------PGKADAIFIGGSG--GNLTAIIDWSL--AHLHPGGRLVLTFI 132 (187)
T ss_pred EEecCchhhc---------CcCCCEEEECCCc--cCHHHHHHHHH--HhcCCCeEEEEEEe
Confidence 9999974321 2579999998532 34566666554 58999999998764
No 47
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=128.78 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=111.0
Q ss_pred Eeee--ecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCC
Q 021116 112 LGGK--ARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMD 187 (317)
Q Consensus 112 i~G~--~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin 187 (317)
|-|. |.+..+...++. ..||.++.+.+++.+.+.+.. -.++..+||+|||||.+++.+++ .+..+|+|||.+
T Consensus 106 Ilg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S 181 (328)
T KOG2904|consen 106 ILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS 181 (328)
T ss_pred eeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence 3454 557788776666 479999999999988886532 13566899999999999998765 345579999999
Q ss_pred HHHHHHHHHHhHHHhCCCCceEEEEe----cHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-----------HHH----
Q 021116 188 PWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-----------YEV---- 248 (317)
Q Consensus 188 ~~al~~~ar~N~~~~gl~~~v~ii~g----D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-----------~~~---- 248 (317)
+.|+ .+|.+|++++++.+++.+++- |..+-.+ ...+++|+++.||||...+ |+.
T Consensus 182 ~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~------l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lAL 254 (328)
T KOG2904|consen 182 KAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHP------LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLAL 254 (328)
T ss_pred HHHH-HHHHHHHHHHhhcCceEEEecccccccccccc------cccCceeEEecCCCcccccchhhcCchheecCchhhh
Confidence 9999 999999999999999988854 4333221 1247899999999997531 211
Q ss_pred ---------HHHHH-HHcCCcCCCeEEEEEeC
Q 021116 249 ---------LMAQI-SKSALVGKDSFIVVEYP 270 (317)
Q Consensus 249 ---------~l~~L-~~~~lLkpgG~ivv~~~ 270 (317)
+...+ .+.|.|.+||.++++..
T Consensus 255 dGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 255 DGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 11111 14589999999999988
No 48
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.53 E-value=7.5e-14 Score=136.78 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=92.1
Q ss_pred CeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 157 GRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
-+|||++||||..|++++++ |+.+|+++|+|+.++ +.+++|++.|+++ +++++++|+..++... ...||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCE
Confidence 48999999999999999987 778999999999999 9999999999986 4889999999988643 357999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCce
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
|++|| |+. ..+.++.+. +.++++|++++.+. +...+++......-++||..
T Consensus 118 IdlDP-fGs--~~~fld~al--~~~~~~glL~vTaT---D~~~L~G~~~~~~~rkYga~ 168 (374)
T TIGR00308 118 IDIDP-FGT--PAPFVDSAI--QASAERGLLLVTAT---DTSALCGNYPKSCLRKYGAN 168 (374)
T ss_pred EEeCC-CCC--cHHHHHHHH--HhcccCCEEEEEec---ccHHhcCCChHHHHHHhCCc
Confidence 99999 543 234455443 26789999999874 22222333222233678754
No 49
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.49 E-value=4.6e-13 Score=131.64 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=81.2
Q ss_pred CCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+.+|||+|||+|.+++.++. .++.+|+++|+|+.++ +.+++|++.|++++ ++++++|+..++.. .+.||+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-------~~~fD~ 128 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-------ERKFDV 128 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-------cCCCCE
Confidence 46899999999999999765 4666899999999999 99999999999965 77999999887642 257999
Q ss_pred EEECCCCCCccHHHHHHH-HHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAVDYEVLMAQ-ISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~-L~~~~lLkpgG~ivv~~ 269 (317)
|++||| + .-.+.++. +. .++++|+++++.
T Consensus 129 V~lDP~-G--s~~~~l~~al~---~~~~~gilyvSA 158 (382)
T PRK04338 129 VDIDPF-G--SPAPFLDSAIR---SVKRGGLLCVTA 158 (382)
T ss_pred EEECCC-C--CcHHHHHHHHH---HhcCCCEEEEEe
Confidence 999986 3 33455555 33 478999999984
No 50
>PLN02672 methionine S-methyltransferase
Probab=99.49 E-value=4.4e-13 Score=145.12 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=107.1
Q ss_pred eecceEEecCCCC-CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHH
Q 021116 115 KARRKKLLSPKGM-DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVS 192 (317)
Q Consensus 115 ~~~G~~l~~p~~~-~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~ 192 (317)
.|+|..+.+.++. ..||.++.+.+. .+..... ..++.+|||+|||||.+++.++... ..+|+++|+|+.++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-----~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al- 155 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-----IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV- 155 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-----cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-
Confidence 4678888887766 579999988877 3332110 1246799999999999999887654 46899999999999
Q ss_pred HHHHHhHHHhCCC---------------CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c----------H
Q 021116 193 NVLIPNLEWTGFL---------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D----------Y 246 (317)
Q Consensus 193 ~~ar~N~~~~gl~---------------~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~----------~ 246 (317)
+.|++|++.|+++ ++++++++|+.+.+.. ...+||+|+.||||... + +
T Consensus 156 ~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ 229 (1082)
T PLN02672 156 KVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD------NNIELDRIVGCIPQILNPNPEAMSKLVTEN 229 (1082)
T ss_pred HHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc------cCCceEEEEECCCcCCCcchhhcChhhhhc
Confidence 9999999987642 4699999999876521 12369999999999642 1 0
Q ss_pred H------------------------HHHHHHH--HcCCcCCCeEEEEEeCCCCC
Q 021116 247 E------------------------VLMAQIS--KSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 247 ~------------------------~~l~~L~--~~~lLkpgG~ivv~~~~~~~ 274 (317)
+ ...+.+. ..++|+|||++++|...++.
T Consensus 230 ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 230 ASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred cccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 0 0011222 23689999999999986643
No 51
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.48 E-value=2.7e-13 Score=118.14 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++.++++++ .+|+++|+|+.++ +.+++|+.. .++++++++|+.++.. .+..||.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~-~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~ 80 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLA-PRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYK 80 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHH-HHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCE
Confidence 56799999999999999999885 5799999999998 999999864 2468999999987631 1246999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|+.||||+. ..+++..+.+...+.++|+++++....+.+.
T Consensus 81 vi~n~Py~~--~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~ 120 (169)
T smart00650 81 VVGNLPYNI--STPILFKLLEEPPAFRDAVLMVQKEVARRLA 120 (169)
T ss_pred EEECCCccc--HHHHHHHHHhcCCCcceEEEEEEHHHhHHhc
Confidence 999999974 2455555554445668999999887665554
No 52
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.48 E-value=6.6e-13 Score=122.30 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=88.3
Q ss_pred CCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++|||+|||+|..++.++. .+..+|+++|+|++++ +.|++|++.+|+.++++++.+|+.+.+..+... ...++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCC
Confidence 578999999999998776554 3356899999999998 999999999999989999999999987654210 113689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|.. +..|.+.++.+. ++|+|||+|++...
T Consensus 146 D~VfiDa~--k~~y~~~~~~~~--~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD--KPNYVHFHEQLL--KLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHH--HhcCCCeEEEEEcC
Confidence 99999963 346677777665 48999999998654
No 53
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.48 E-value=2.1e-13 Score=132.69 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=86.6
Q ss_pred ceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 118 RKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 118 G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
+..+...++.++.+-.. +.+.+++++....+ ..+.++||+|||+|++++.++.. +.+|+|||+++.++ +.|++
T Consensus 164 ~~~~~~~~~sFfQvN~~-~~~~l~~~~~~~l~----~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~ 236 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPE-QNEKLYEQALEWLD----LSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARE 236 (352)
T ss_dssp TEEEEEETTS---SBHH-HHHHHHHHHHHHCT----T-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHH
T ss_pred ceEEEECCCcCccCcHH-HHHHHHHHHHHHhh----cCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHH
Confidence 44566666666666544 33344444322211 22348999999999999977654 56899999999999 99999
Q ss_pred hHHHhCCCCceEEEEecHHHHHHHHhh------h---cCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 198 NLEWTGFLDVSSIHTVRVETFLERAEQ------F---VGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 198 N~~~~gl~~~v~ii~gD~~~~l~~~~~------~---~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|++.|+++| ++++.+++.++...+.. + ......+|+|++|||+. |..+..++.+. +..-++|++
T Consensus 237 Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~-G~~~~~~~~~~-----~~~~ivYvS 309 (352)
T PF05958_consen 237 NAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA-GLDEKVIELIK-----KLKRIVYVS 309 (352)
T ss_dssp HHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT--SCHHHHHHHH-----HSSEEEEEE
T ss_pred HHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC-CchHHHHHHHh-----cCCeEEEEE
Confidence 999999965 99999988765432210 0 01123689999999985 44456666654 236799999
Q ss_pred eCCCCC
Q 021116 269 YPLRTD 274 (317)
Q Consensus 269 ~~~~~~ 274 (317)
|+..+-
T Consensus 310 CnP~tl 315 (352)
T PF05958_consen 310 CNPATL 315 (352)
T ss_dssp S-HHHH
T ss_pred CCHHHH
Confidence 997653
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.48 E-value=1.1e-12 Score=106.34 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
..++..+.+.+.. .++.+|||+|||+|.+++.++++ +..+|+++|.++.++ +.+++|++.+++. +++++.
T Consensus 5 ~~~~~~~~~~~~~-------~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~ 75 (124)
T TIGR02469 5 REVRALTLSKLRL-------RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVE 75 (124)
T ss_pred HHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEe
Confidence 3444445555432 34679999999999999998876 346899999999998 9999999998876 488999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+...+... .++||+|+++.+.. .+.++++.+. ++|+|||++++..
T Consensus 76 ~~~~~~~~~~------~~~~D~v~~~~~~~--~~~~~l~~~~--~~Lk~gG~li~~~ 122 (124)
T TIGR02469 76 GDAPEALEDS------LPEPDRVFIGGSGG--LLQEILEAIW--RRLRPGGRIVLNA 122 (124)
T ss_pred ccccccChhh------cCCCCEEEECCcch--hHHHHHHHHH--HHcCCCCEEEEEe
Confidence 9876533221 36899999986432 4456666665 5899999999864
No 55
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=4.2e-13 Score=123.89 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...++.+.+.+.. .+|.+|||+|||||-+++.+++. |..+|+++|+|+.|+ +.+++-+...+..+ ++++.
T Consensus 37 ~~Wr~~~i~~~~~-------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~ 107 (238)
T COG2226 37 RLWRRALISLLGI-------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVV 107 (238)
T ss_pred HHHHHHHHHhhCC-------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEE
Confidence 4456666666543 36899999999999999987764 556899999999999 99999999888877 99999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|+++. |.++.+||+|.+. |+. .++++.|+.+. |+|+|||++++-.-..
T Consensus 108 ~dAe~L-------Pf~D~sFD~vt~~--fglrnv~d~~~aL~E~~--RVlKpgG~~~vle~~~ 159 (238)
T COG2226 108 GDAENL-------PFPDNSFDAVTIS--FGLRNVTDIDKALKEMY--RVLKPGGRLLVLEFSK 159 (238)
T ss_pred echhhC-------CCCCCccCEEEee--ehhhcCCCHHHHHHHHH--HhhcCCeEEEEEEcCC
Confidence 999874 5678999999997 433 35677777765 7999999887655433
No 56
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.46 E-value=1.8e-12 Score=115.79 Aligned_cols=120 Identities=19% Similarity=0.118 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
...+.+++.+.....+ .++.+|||+|||+|.+++.++. ....+|+++|.++.++ +.|++|++.+++.+ ++++++
T Consensus 28 ~~~~~~~d~l~l~~~l---~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~ 102 (187)
T PRK00107 28 LWERHILDSLAIAPYL---PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHhhc---CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEec
Confidence 4455555655332111 2378999999999999998765 3445899999999999 99999999999866 999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|+.++.. .++||+|+++. ...+++.++.+. ++|+|||++++.....
T Consensus 103 d~~~~~~--------~~~fDlV~~~~---~~~~~~~l~~~~--~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 103 RAEEFGQ--------EEKFDVVTSRA---VASLSDLVELCL--PLLKPGGRFLALKGRD 148 (187)
T ss_pred cHhhCCC--------CCCccEEEEcc---ccCHHHHHHHHH--HhcCCCeEEEEEeCCC
Confidence 9877421 36899999974 345677777665 5899999999887654
No 57
>PLN02476 O-methyltransferase
Probab=99.44 E-value=2.6e-12 Score=121.20 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+.++|||+|||+|..++.++.. + ..+|+++|.+++.+ +.|++|++.+|+.++++++.+|+.+.+..+.. ....++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-NGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-cccCCC
Confidence 35789999999999999987752 2 34799999999998 99999999999999999999999998876421 112368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+||+|++ +..|.+.++.+. ++|++||+|++..-
T Consensus 195 FD~VFIDa~--K~~Y~~y~e~~l--~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDAD--KRMYQDYFELLL--QLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCC--HHHHHHHHHHHH--HhcCCCcEEEEecC
Confidence 999999985 457888888776 48999999998754
No 58
>PRK14968 putative methyltransferase; Provisional
Probab=99.44 E-value=5.4e-12 Score=110.07 Aligned_cols=106 Identities=18% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.+++.++.++ .+|+++|++++++ +.+++|++.++..++ +.++.+|+.+.+ ....||
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~d 92 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSDLFEPF--------RGDKFD 92 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEeccccccc--------cccCce
Confidence 57799999999999999888885 5799999999998 999999999888654 888899976543 134799
Q ss_pred EEEECCCCCCcc----------------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVD----------------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~----------------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++||||.... +...++.+. ++|+|||.+++..+..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVG--RYLKPGGRILLLQSSL 151 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHH--HhcCCCeEEEEEEccc
Confidence 999999986411 122333333 6899999988876643
No 59
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.6e-13 Score=131.56 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred cccccceEEEEeeeecceEEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEE
Q 021116 102 ERTTHRLLQVLGGKARRKKLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEV 181 (317)
Q Consensus 102 p~~~~~il~ii~G~~~G~~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V 181 (317)
|....+.-.+|...+.|.++.+.++.++.--+. .++.++...+...++ ..++.++|+|||||.+|+ ++++++++|
T Consensus 334 ~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l---~~~k~llDv~CGTG~igl-ala~~~~~V 408 (534)
T KOG2187|consen 334 PLQLVGGDPYITESLLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGL-ALARGVKRV 408 (534)
T ss_pred CeEEEccccEEEeecCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCC---CCCcEEEEEeecCCceeh-hhhccccce
Confidence 333333334556678899999988876433222 344444444433222 457899999999999998 556778899
Q ss_pred EEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc-EEEECCCCCCccHHHHHHHHHHcCCcC
Q 021116 182 HFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD-YMSVTPPYTAVDYEVLMAQISKSALVG 260 (317)
Q Consensus 182 ~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD-lV~~dPPy~~~~~~~~l~~L~~~~lLk 260 (317)
++||+++.++ +-|+.|++.||++| .+|++|-+++.+..+.+ ..-+.-+ ++++|||. .+.....+++|.+ .-+
T Consensus 409 iGvEi~~~aV-~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~--~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~--~~~ 481 (534)
T KOG2187|consen 409 IGVEISPDAV-EDAEKNAQINGISN-ATFIVGQAEDLFPSLLT--PCCDSETLVAIIDPPR-KGLHMKVIKALRA--YKN 481 (534)
T ss_pred eeeecChhhc-chhhhcchhcCccc-eeeeecchhhccchhcc--cCCCCCceEEEECCCc-ccccHHHHHHHHh--ccC
Confidence 9999999999 99999999999986 89999977777655421 0112346 88899997 4566677777764 345
Q ss_pred CCeEEEEEeCCCC
Q 021116 261 KDSFIVVEYPLRT 273 (317)
Q Consensus 261 pgG~ivv~~~~~~ 273 (317)
+.-++|++|+..+
T Consensus 482 ~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 482 PRRLVYVSCNPHT 494 (534)
T ss_pred ccceEEEEcCHHH
Confidence 7888999999764
No 60
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.42 E-value=1.6e-12 Score=110.92 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++. .+ ..+++++|+|++++ +.|+++++.+++. +++++++|+.+ +... . .+.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~----~-~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQE----L-EEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGC----S-STTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccc----c-CCCe
Confidence 578999999999999998883 32 46899999999999 9999999999997 69999999988 3210 0 1689
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|++++++. ..+....++.+. +.|+++|++++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~--~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNII--RLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHH--HHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHH--HHcCCCcEEEEEECC
Confidence 9999998753 335566677665 489999999987764
No 61
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.41 E-value=2.9e-12 Score=119.87 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. + ..+|+++|+++.++ +.+++|++.+|+.+ +++++.|+..+... .+.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~-------~~~ 140 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLN-VAVTNFDGRVFGAA-------VPK 140 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCc-EEEecCCHHHhhhh-------ccC
Confidence 36789999999999999886653 2 34799999999999 99999999999864 89999998765321 256
Q ss_pred ccEEEECCCCCCc-c------------HH-------HHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV-D------------YE-------VLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~-~------------~~-------~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
||.|++|||+... . .+ .+.+.|. ..++|+|||+++.++-
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999999997531 0 00 1112222 2468999999876643
No 62
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=8e-12 Score=120.70 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|.+|+|+|||.|.+++.+++.|..+|+++|+||+++ +.+++|++.|+++++++.++||+.++.... +.+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD 258 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD 258 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence 46899999999999999999999987799999999999 999999999999998999999999987542 6799
Q ss_pred EEEECCCCCCc-cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPPYTAV-DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPPy~~~-~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
-|+++-|.... .++..++ .++++|++.......+.
T Consensus 259 rIim~~p~~a~~fl~~A~~------~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALE------LLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCCCcchhhHHHHHH------HhhcCcEEEEEeccchh
Confidence 99999875422 2233332 46779998876654443
No 63
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=9.1e-12 Score=115.42 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.+++.++..|. +|+++|++++++ +.|+++++..|+.++++++++|+.++.... .++||+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~ 115 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDL 115 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCE
Confidence 467999999999999999888875 799999999999 999999999988778999999998764322 468999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++...+. ..+....++.+. ++|+|||++++..
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 149 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLW--SVLRPGGALSLMF 149 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHH--HHcCCCeEEEEEE
Confidence 99876532 224455666665 5899999998754
No 64
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.38 E-value=9.8e-13 Score=114.99 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=60.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
.|+|+|||.|.-++..++. +.+|++||+|+..+ ++|+.|++..|+.++++++++|+.+.+.... ....||+||+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~----~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLK----SNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc----ccccccEEEE
Confidence 6999999999999988877 46899999999999 9999999999999999999999998764431 0112899999
Q ss_pred CCCCCCc
Q 021116 238 TPPYTAV 244 (317)
Q Consensus 238 dPPy~~~ 244 (317)
+||++..
T Consensus 76 SPPWGGp 82 (163)
T PF09445_consen 76 SPPWGGP 82 (163)
T ss_dssp ---BSSG
T ss_pred CCCCCCc
Confidence 9999853
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=5.4e-12 Score=114.19 Aligned_cols=102 Identities=14% Similarity=0.009 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.++..++.... .+|+++|+++.++ +.|++|++.+|+. +++++.+|+.+... ...+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~~-~v~~~~~d~~~~~~-------~~~~ 146 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGLD-NVIVIVGDGTQGWE-------PLAP 146 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCCC-CeEEEECCcccCCc-------ccCC
Confidence 4688999999999999987776532 3699999999998 9999999999984 59999999876432 1257
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+++++... + .+.+. +.|+|||++++....
T Consensus 147 fD~Ii~~~~~~~--~---~~~~~--~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 147 YDRIYVTAAGPK--I---PEALI--DQLKEGGILVMPVGE 179 (215)
T ss_pred CCEEEEcCCccc--c---cHHHH--HhcCcCcEEEEEEcC
Confidence 999999976432 2 22232 268999999987653
No 66
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.38 E-value=1e-11 Score=112.54 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
......+++..+... .+.++||++||++|.-++.++.. + ..+|+.+|.|++.+ +.|++|++..|+.+++++
T Consensus 29 i~~~~g~lL~~l~~~------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~ 101 (205)
T PF01596_consen 29 ISPETGQLLQMLVRL------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEV 101 (205)
T ss_dssp HHHHHHHHHHHHHHH------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEE
T ss_pred cCHHHHHHHHHHHHh------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEE
Confidence 333344444554432 35689999999999999987753 2 35899999999998 999999999999999999
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+.+|+.+++..+.. ....++||+||+|. .+..|...++.+. ++|++||+|++....
T Consensus 102 ~~gda~~~l~~l~~-~~~~~~fD~VFiDa--~K~~y~~y~~~~~--~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 102 IEGDALEVLPELAN-DGEEGQFDFVFIDA--DKRNYLEYFEKAL--PLLRPGGVIIADNVL 157 (205)
T ss_dssp EES-HHHHHHHHHH-TTTTTSEEEEEEES--TGGGHHHHHHHHH--HHEEEEEEEEEETTT
T ss_pred EEeccHhhHHHHHh-ccCCCceeEEEEcc--cccchhhHHHHHh--hhccCCeEEEEcccc
Confidence 99999999876531 01125799999996 4668888888776 489999999997654
No 67
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=6.4e-12 Score=125.13 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|..++.++.++. .+|+++|+++.++ +.+++|++.+|+. ++++++|+.+..... ...+|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~f 314 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPF 314 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCC
Confidence 3688999999999999998887643 5899999999999 9999999999984 689999987643211 13579
Q ss_pred cEEEECCCCCC-cc---------------H-------HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VD---------------Y-------EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~---------------~-------~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++|||+.. +. . .++++. ..++|+|||+++..+-
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~--a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA--LWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH--HHHhcCCCCEEEEEeC
Confidence 99999999852 10 0 122222 2368999999886553
No 68
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.37 E-value=2.4e-12 Score=116.15 Aligned_cols=99 Identities=18% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++..|+|+|||.|.+++.+++ ..+.+|+++|+||+++ +.+++|++.|++++++.++++|+.++.. ...|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~ 170 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--------EGKF 170 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----------TT-E
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cccc
Confidence 3689999999999999999887 3456899999999999 9999999999999999999999998874 3789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
|.|+++.|..... .++.+. .+++++|++-
T Consensus 171 drvim~lp~~~~~---fl~~~~--~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLE---FLDAAL--SLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGG---GHHHHH--HHEEEEEEEE
T ss_pred CEEEECChHHHHH---HHHHHH--HHhcCCcEEE
Confidence 9999998865322 233322 2578888763
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.36 E-value=2.2e-11 Score=110.41 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++.. + ..+|+++|+++.++ +.+++|++..++ ++++++++|+.++. ...++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~~~~-------~~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAMELP-------FDDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechhcCC-------CCCCCc
Confidence 5789999999999999877754 3 34899999999998 999999988887 45899999987642 124689
Q ss_pred cEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 233 DYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 233 DlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|+|+++-.+.. .++..+++.+. ++|+|||++++....
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~--~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMY--RVVKPGGKVVCLETS 153 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHH--HHcCcCeEEEEEECC
Confidence 99999765432 35566666654 589999999876653
No 70
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.36 E-value=1.8e-12 Score=119.48 Aligned_cols=114 Identities=21% Similarity=0.242 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 135 VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 135 ~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.+++.+.+.+.. .++.+|||+|||||.++..++.. + ..+|+++|+++.++ +.|++.++..+.. ++++++
T Consensus 34 ~wr~~~~~~~~~-------~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~ 104 (233)
T PF01209_consen 34 RWRRKLIKLLGL-------RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQ 104 (233)
T ss_dssp ---SHHHHHHT---------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHhccCC-------CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEE
Confidence 345555555543 46889999999999999988764 3 24899999999999 9999999988875 699999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+.+. |..+++||+|++. |.. .+....++.+. |+|+|||++++-
T Consensus 105 ~da~~l-------p~~d~sfD~v~~~--fglrn~~d~~~~l~E~~--RVLkPGG~l~il 152 (233)
T PF01209_consen 105 GDAEDL-------PFPDNSFDAVTCS--FGLRNFPDRERALREMY--RVLKPGGRLVIL 152 (233)
T ss_dssp -BTTB---------S-TT-EEEEEEE--S-GGG-SSHHHHHHHHH--HHEEEEEEEEEE
T ss_pred cCHHHh-------cCCCCceeEEEHH--hhHHhhCCHHHHHHHHH--HHcCCCeEEEEe
Confidence 999874 2346899999985 332 24556666554 699999987644
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=111.69 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..+..++.. + ..+|+++|+++.++ +.|++|++.+++.++++++.+|+.+.+. ...+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------~~~~ 142 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLE-------KHAP 142 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCc-------cCCC
Confidence 35789999999999999876653 2 34799999999998 9999999999987779999999876432 1368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|+++.... .+ .+.+. +.|+|||++++...
T Consensus 143 fD~Ii~~~~~~--~~---~~~l~--~~L~~gG~lvi~~~ 174 (205)
T PRK13944 143 FDAIIVTAAAS--TI---PSALV--RQLKDGGVLVIPVE 174 (205)
T ss_pred ccEEEEccCcc--hh---hHHHH--HhcCcCcEEEEEEc
Confidence 99999986532 22 23333 36899999988664
No 72
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.3e-11 Score=123.15 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++..|+.+ ++++++|+.++.... .++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~------~~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSS-IEIKIADAERLTEYV------QDT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCe-EEEEECchhhhhhhh------hcc
Confidence 36789999999999999877653 345899999999999 99999999999864 899999988754222 367
Q ss_pred ccEEEECCCCCC-ccH---------------H----HHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTA-VDY---------------E----VLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~---------------~----~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
||.|++|||+.. +.+ . .+.+.|. ..+.|+|||+++.++-
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999999842 210 0 1112222 2468999999876544
No 73
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=6.9e-12 Score=125.39 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.+++. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.+....+ .+.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~------~~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKF------AEK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchh------ccc
Confidence 35789999999999999987764 345899999999999 99999999999966 999999987754222 257
Q ss_pred ccEEEECCCCCC-ccH------------HH-------HHHHHH-HcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VDY------------EV-------LMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~------------~~-------~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
||+|++|||+.. +.+ .+ +.+.+. ..++|+|||.++.++
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999999999742 110 11 011222 246899999988553
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=1.9e-11 Score=109.89 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=83.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.+++.++... ..+|++||+++.++ +.|++|++.+++. +++++++|+.+.+... ...++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~----~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGLT-NLRLLCGDAVEVLLDM----FPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCCC-CEEEEecCHHHHHHHH----cCccccc
Confidence 46799999999999999877653 34799999999999 9999999998874 5999999993333211 1246799
Q ss_pred EEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.|+++.| +... .....++.+. ++|+|||++++.++....
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~--~~LkpgG~l~i~~~~~~~ 161 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYA--RKLKPGGEIHFATDWEGY 161 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHH--HHcCCCCEEEEEcCCHHH
Confidence 9998643 2210 1355666665 489999999998765443
No 75
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.32 E-value=1.8e-11 Score=109.45 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.++++++.+|+. +++...|+..+. . .++||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~~~~--~------~~~fD~ 97 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDINAAA--L------NEDYDF 97 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccchhcc--c------cCCCCE
Confidence 467999999999999999988886 799999999999 9999999888874 667777765431 1 257999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|++..+++.. .....++.+. ++|+|||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQ--AHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHH--HHhCCCcEEEEE
Confidence 9998776532 3345565554 589999985543
No 76
>PLN02244 tocopherol O-methyltransferase
Probab=99.32 E-value=1.5e-11 Score=119.14 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=84.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.++.....+|++||+++.++ +.++++++..++.++++++.+|+.+. +..+++||+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~~~~-------~~~~~~FD~ 189 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADALNQ-------PFEDGQFDL 189 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCcccC-------CCCCCCccE
Confidence 5789999999999999988775334799999999998 99999999988877899999998764 123578999
Q ss_pred EEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.--. +..+....++.+. ++|+|||++++...
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~--rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELA--RVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCCHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 9985332 2335556666664 58999999998653
No 77
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=3.7e-11 Score=109.68 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=92.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~ 230 (317)
...+++|++|++.|.-++.++.. . ..+++.||.|++.+ +.|++|++..|+.++++++. +|+.+.+... ..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~ 131 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDG 131 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCC
Confidence 35789999999999999986652 2 35899999999998 99999999999999999998 5998887642 258
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+||+||+|. .+.+|.+.++.+. ++|+|||+|++..-...
T Consensus 132 ~fDliFIDa--dK~~yp~~le~~~--~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 132 SFDLVFIDA--DKADYPEYLERAL--PLLRPGGLIVADNVLFG 170 (219)
T ss_pred CccEEEEeC--ChhhCHHHHHHHH--HHhCCCcEEEEeecccC
Confidence 999999995 6678888888876 48999999999766443
No 78
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.3e-11 Score=120.26 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCC------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCS------------------------------ 179 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~------------------------------ 179 (317)
-|..+.++.++.-...- .++..++|+.||||++.|||+-++..
T Consensus 173 ApLketLAaAil~lagw-------~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 173 APLKETLAAAILLLAGW-------KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred CCchHHHHHHHHHHcCC-------CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 45667677666544332 35679999999999999999876631
Q ss_pred ----------EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-----
Q 021116 180 ----------EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV----- 244 (317)
Q Consensus 180 ----------~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~----- 244 (317)
.++++|+|++++ +.|+.|++..|+.+.|+|.++|+.++-.. -+.+|+||+||||+..
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~ 317 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEA 317 (381)
T ss_pred HHHhhcCccceEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChh
Confidence 378999999999 99999999999999999999999876421 1589999999999853
Q ss_pred ----cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 245 ----DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 245 ----~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.|..+.+.+. +.++--+..++..+
T Consensus 318 ~v~~LY~~fg~~lk--~~~~~ws~~v~tt~ 345 (381)
T COG0116 318 LVAKLYREFGRTLK--RLLAGWSRYVFTTS 345 (381)
T ss_pred hHHHHHHHHHHHHH--HHhcCCceEEEEcc
Confidence 2344444443 35565555555544
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2.9e-11 Score=108.28 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|..++.++++|. +|+++|+++.++ +.++++++..++.+ ++++..|+.++. ..+.||+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i-~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~fD~ 98 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSI-ANLERIKAAENLDN-LHTAVVDLNNLT--------FDGEYDF 98 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHcCCCc-ceEEecChhhCC--------cCCCcCE
Confidence 568999999999999999988876 799999999999 99999999888854 888889986542 1357999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
|++...++.- .....++.+. ++|+|||++++
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~--~~LkpgG~~~~ 132 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQ--RCTKPGGYNLI 132 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHH--HHcCCCcEEEE
Confidence 9987554321 3445555554 58999999654
No 80
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.30 E-value=2.5e-11 Score=116.93 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=84.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..|+ +|++||.+++++ +.|+++++..+..++++++++|+.++.. .+++||
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD 200 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD 200 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence 3577999999999999988877765 799999999999 9999988776655579999999877531 246899
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++.-- ++..+....++.+. ++|+|||.+++....+
T Consensus 201 ~Vi~~~vLeHv~d~~~~L~~l~--r~LkPGG~liist~nr 238 (322)
T PLN02396 201 AVLSLEVIEHVANPAEFCKSLS--ALTIPNGATVLSTINR 238 (322)
T ss_pred EEEEhhHHHhcCCHHHHHHHHH--HHcCCCcEEEEEECCc
Confidence 9998432 22335567777776 4899999999887543
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=3e-11 Score=109.51 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||||.++..++.. +. .+|+++|++++++ +.+++|++.+|+. +++++.+|+.+... ....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~v~~~~gd~~~~~~-------~~~~ 145 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-NVEVIVGDGTLGYE-------ENAP 145 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-CeEEEECCcccCCC-------cCCC
Confidence 46889999999999999876654 32 4899999999998 9999999999985 59999999865431 2368
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+++--. .+....+.+ .|+|||++++....
T Consensus 146 fD~I~~~~~~-----~~~~~~l~~--~LkpgG~lvi~~~~ 178 (212)
T PRK13942 146 YDRIYVTAAG-----PDIPKPLIE--QLKDGGIMVIPVGS 178 (212)
T ss_pred cCEEEECCCc-----ccchHHHHH--hhCCCcEEEEEEcC
Confidence 9999997421 122233332 68999999987653
No 82
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.29 E-value=5.6e-11 Score=106.09 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=86.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...++||+|||+|.+++.++.+. ...|+++|+++.++ +.|++|++..++. +++++++|+.+...... ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCcee
Confidence 35699999999999999887753 34799999999999 9999999999886 59999999988654321 235899
Q ss_pred EEEECCC--CCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 234 YMSVTPP--YTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 234 lV~~dPP--y~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.|+++.| +.+. ..+..++.+. ++|+|||.+++.+....
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~--r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYA--NVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHH--HHhCCCCEEEEEeCCHH
Confidence 9999864 3221 1245666665 58999999999877553
No 83
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.29 E-value=4.7e-11 Score=110.39 Aligned_cols=104 Identities=7% Similarity=0.033 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.+|||+|||+|..++.++.. ...+|+++|+++.++ +.|++|++.++..++++++++|+.+.. .+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 125 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN 125 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence 5789999999999999876652 235899999999999 999999998888778999999987642 246
Q ss_pred ccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+|+++...+.- ....+++.+. +.|+|||.+++...
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~--~~LkpGG~l~l~e~ 165 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIY--QGLNPGGALVLSEK 165 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 8999987544321 1234555554 58999999988754
No 84
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=3.4e-11 Score=120.16 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+.+ ++++++|+.+..... +...++
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~---~~~~~~ 325 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELK---PQWRGY 325 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhccccc---cccccc
Confidence 36789999999999999887764 235899999999999 99999999999965 999999988653210 001357
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|||+.
T Consensus 326 fD~Vl~DaPCS 336 (434)
T PRK14901 326 FDRILLDAPCS 336 (434)
T ss_pred CCEEEEeCCCC
Confidence 99999999974
No 85
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=3.1e-11 Score=120.78 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+. +++++++|+.++. ...+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~~~Da~~~~--------~~~~ 318 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETIEGDARSFS--------PEEQ 318 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEEeCcccccc--------cCCC
Confidence 35789999999999999876652 235899999999999 9999999999985 5899999987653 1357
Q ss_pred ccEEEECCCCCC-ccH-----------HH--------HHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTA-VDY-----------EV--------LMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~-----------~~--------~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
||.|++|||+.. +.+ .+ +.+.|. ..++|+|||+++.++-+
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999999999843 110 01 111222 24689999999876543
No 86
>PHA03412 putative methyltransferase; Provisional
Probab=99.28 E-value=1.5e-11 Score=113.42 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR----GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~----Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+.+|||+|||||.+++.++.+ ...+|++||+|+.++ ++|++|.. ++.++++|+.++. . .+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~------~~~~~~~D~~~~~--~------~~ 113 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVP------EATWINADALTTE--F------DT 113 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhcc------CCEEEEcchhccc--c------cC
Confidence 3679999999999999987753 234899999999999 99998853 2678999987542 1 35
Q ss_pred CccEEEECCCCCC
Q 021116 231 PFDYMSVTPPYTA 243 (317)
Q Consensus 231 ~fDlV~~dPPy~~ 243 (317)
+||+||+||||..
T Consensus 114 ~FDlIIsNPPY~~ 126 (241)
T PHA03412 114 LFDMAISNPPFGK 126 (241)
T ss_pred CccEEEECCCCCC
Confidence 8999999999984
No 87
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.28 E-value=3.4e-11 Score=119.89 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|..++.++.. +..+|+++|+++.++ +.+++|++.+|+..++++..+|........ ...+|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-----~~~~f 310 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLTIKAETKDGDGRGPSQWA-----ENEQF 310 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeccccccccccc-----ccccc
Confidence 46789999999999999987764 445899999999999 999999999998644455777765322100 13679
Q ss_pred cEEEECCCCCC-ccH------------HH-------HHHHHH-HcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VDY------------EV-------LMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~~------------~~-------~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
|.|++|||+.. +.+ ++ +.+.|. ..++|+|||+++.++-
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999999863 211 00 112222 2468999999886643
No 88
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.27 E-value=4.9e-11 Score=125.63 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=102.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--------------------------------
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG-------------------------------- 177 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G-------------------------------- 177 (317)
-|..+.++.++.....- ...+..++|++||+|++.|||+..+
T Consensus 171 Apl~etlAaa~l~~a~w------~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a 244 (702)
T PRK11783 171 APLKENLAAAILLRSGW------PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEA 244 (702)
T ss_pred CCCcHHHHHHHHHHcCC------CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHH
Confidence 34556677777644321 0246899999999999999987531
Q ss_pred -----------CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-
Q 021116 178 -----------CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD- 245 (317)
Q Consensus 178 -----------a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~- 245 (317)
..+++|+|+|+.++ +.|++|++.+|+.+.+++.++|+.++.... ..+.||+|++||||+...
T Consensus 245 ~~~~~~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPPYg~r~~ 318 (702)
T PRK11783 245 QERARAGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPPYGERLG 318 (702)
T ss_pred HHHHhhcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCCCcCccC
Confidence 12599999999999 999999999999888999999988753211 124699999999997531
Q ss_pred --------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEE--eecCceEEEEEeechh
Q 021116 246 --------YEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKD--RRFGRTHLAIYGPDWA 303 (317)
Q Consensus 246 --------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~--r~yG~~~l~~~~p~~~ 303 (317)
|..+-+.+. ...+|+.+++-.+.. .+... -++...+. -..|.....+|.....
T Consensus 319 ~~~~l~~lY~~lg~~lk---~~~~g~~~~llt~~~-~l~~~-~~l~~~~~~~l~nG~l~~~l~~~~~~ 381 (702)
T PRK11783 319 EEPALIALYSQLGRRLK---QQFGGWNAALFSSSP-ELLSC-LGLRADKQYKLKNGALECVLKNYTIA 381 (702)
T ss_pred chHHHHHHHHHHHHHHH---HhCCCCeEEEEeCCH-HHHHH-hCCCCCCCeeeecCceEEEEEEEEcc
Confidence 222223332 234787777666533 22211 12221111 2246666666665443
No 89
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.8e-12 Score=106.23 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
.||...++..++..+-+..+ +.+|+.++|||||+|.+.+.+.-.+...|+++|++|+++ +.+.+|++.+.+. +.
T Consensus 26 Y~T~p~iAasM~~~Ih~Tyg---diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvq--id 99 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYG---DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQ--ID 99 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhc---cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhh--hh
Confidence 45666667777766644322 368999999999999999866656778899999999999 9999999999875 68
Q ss_pred EEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 210 IHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 210 ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
++++|+.+... ..+.||.+++||||+..
T Consensus 100 lLqcdildle~-------~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 100 LLQCDILDLEL-------KGGIFDTAVINPPFGTK 127 (185)
T ss_pred eeeeeccchhc-------cCCeEeeEEecCCCCcc
Confidence 99999877542 24789999999999853
No 90
>PRK00811 spermidine synthase; Provisional
Probab=99.26 E-value=8.6e-11 Score=111.15 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C--CCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F--LDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l--~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..++|||+|||+|.++.++++. +..+|++||+|+.++ +.|++++...+ . +++++++.+|+.+++... .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~ 148 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------E 148 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhC------C
Confidence 5689999999999999998886 677899999999999 99999986542 2 457999999999987542 4
Q ss_pred CCccEEEECC--CCCCc--cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 230 GPFDYMSVTP--PYTAV--DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 230 ~~fDlV~~dP--Py~~~--~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++||+|++|. |+... .+ .+.++.+. +.|+|||++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~--~~L~~gGvlv~~~~ 192 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCK--RALKEDGIFVAQSG 192 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHH--HhcCCCcEEEEeCC
Confidence 6899999984 44321 11 34444444 58999999998654
No 91
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.24 E-value=1.9e-10 Score=106.95 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=90.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.++||++|+++|.-++.+++. + ..+|+.+|.+++.+ +.|++|++..|+.++++++.||+.+.+..+.......++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5679999999999999976642 2 34899999999998 9999999999999999999999999987653100012589
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|. .+..|...++.+. ++|++||+|++..-
T Consensus 158 D~iFiDa--dK~~Y~~y~~~~l--~ll~~GGviv~DNv 191 (247)
T PLN02589 158 DFIFVDA--DKDNYINYHKRLI--DLVKVGGVIGYDNT 191 (247)
T ss_pred cEEEecC--CHHHhHHHHHHHH--HhcCCCeEEEEcCC
Confidence 9999996 4567888887765 48999999998654
No 92
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.24 E-value=3.7e-11 Score=110.41 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=85.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+.+|||+|||-|.++..+++.|+ .|+++|++++++ +.|+..+...|+. +++.+..+++.... .++||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPI-EVAKLHALESGVN--IDYRQATVEDLASA-------GGQFD 126 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHH-HHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCcc
Confidence 3689999999999999999999995 699999999999 9999999999885 67788888776532 37999
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+|++.=- -+..+.+..+..+. ++++|||++++++..++.
T Consensus 127 vV~cmEVlEHv~dp~~~~~~c~--~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 127 VVTCMEVLEHVPDPESFLRACA--KLVKPGGILFLSTINRTL 166 (243)
T ss_pred EEEEhhHHHccCCHHHHHHHHH--HHcCCCcEEEEeccccCH
Confidence 9997421 12234455666655 489999999999876654
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=4e-11 Score=112.80 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|||+|||+|.+++.++.+. ..+|+++|+|+.++ +.+++|+. +++++++|+.++.. ..+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v~~D~~e~~~--------~~kFD 128 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWITSDVFEFES--------NEKFD 128 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEEECchhhhcc--------cCCCc
Confidence 35789999999999999877653 45899999999999 99998742 47899999987641 36799
Q ss_pred EEEECCCCCCcc---------HH------H---HHHHHH-HcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTAVD---------YE------V---LMAQIS-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~---------~~------~---~l~~L~-~~~lLkpgG~ivv~~~~~ 272 (317)
+|++||||.... +. + +.+.+. ...+|+|+|.+++.+...
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999999997421 10 1 112222 236899999887766543
No 94
>PRK10742 putative methyltransferase; Provisional
Probab=99.24 E-value=4.8e-11 Score=110.59 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=69.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh------C--CCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT------G--FLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~------g--l~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
+|||++||+|..+++++++|+. |++||.|+.+. .++++|+++. + +..+++++++|+.+++... .
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~ 162 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------T 162 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------C
Confidence 8999999999999999999986 99999999998 9999999985 3 2256999999999998764 2
Q ss_pred CCccEEEECCCCCC
Q 021116 230 GPFDYMSVTPPYTA 243 (317)
Q Consensus 230 ~~fDlV~~dPPy~~ 243 (317)
..||+|++||||..
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 57999999999964
No 95
>PRK04457 spermidine synthase; Provisional
Probab=99.24 E-value=2e-10 Score=107.60 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+..+|||+|||+|.++..++.. +..+|++||+|++++ +.|++++...+..++++++.+|+.+++... .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence 4679999999999999877654 445799999999999 999999876655567999999999987643 36899
Q ss_pred EEEECCCCCCc------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAV------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++|. |... ...+.++.+. +.|+|||++++...
T Consensus 139 ~I~~D~-~~~~~~~~~l~t~efl~~~~--~~L~pgGvlvin~~ 178 (262)
T PRK04457 139 VILVDG-FDGEGIIDALCTQPFFDDCR--NALSSDGIFVVNLW 178 (262)
T ss_pred EEEEeC-CCCCCCccccCcHHHHHHHH--HhcCCCcEEEEEcC
Confidence 999985 3221 1245666654 48999999998654
No 96
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=1.9e-10 Score=107.38 Aligned_cols=108 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHH--hCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEW--TGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~--~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+|||+|||||.++..++.. + ..+|+++|+++.|+ +.|+++... .+..++++++++|+.++ +..+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~~~l-------p~~~ 143 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDATDL-------PFDD 143 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEcccccC-------CCCC
Confidence 35789999999999999877664 3 24799999999999 999876542 22234689999998764 2345
Q ss_pred CCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++||+|++.--.+ ..+....++.+. ++|+|||++++..-.
T Consensus 144 ~sfD~V~~~~~l~~~~d~~~~l~ei~--rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 CYFDAITMGYGLRNVVDRLKAMQEMY--RVLKPGSRVSILDFN 184 (261)
T ss_pred CCEeEEEEecccccCCCHHHHHHHHH--HHcCcCcEEEEEECC
Confidence 7899999863322 224556666665 589999998876543
No 97
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=1e-10 Score=110.44 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|..++.++..|. +|+++|+|+.++ +.+++|++.+++ ++++...|+.... ..++||+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~~~--------~~~~fD~ 187 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINSAS--------IQEEYDF 187 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhccc--------ccCCccE
Confidence 456999999999999999888885 799999999999 999999998888 3888888876532 1368999
Q ss_pred EEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 235 MSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 235 V~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|++...++.- .....++.+. +.|+|||++++.+
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~--~~LkpgG~~l~v~ 223 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQ--EHTNPGGYNLIVC 223 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHH--HhcCCCcEEEEEE
Confidence 9987654321 3455565554 5899999966543
No 98
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=113.24 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||-|.|-|..+++++.+|+.+|+.||.||..+ ++|..|-=.-++. ..++++.||+.++.+.+ .+.+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccCCCCccccccccEEecccHHHHHhcC-----Ccccc
Confidence 46999999999999999999999999999999999999 9998885433433 34799999999999876 46889
Q ss_pred cEEEECCCCCC--c-cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA--V-DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~--~-~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+-|||... + .| ++.-+.+. |+|++||.++=...
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~--RiLkrgGrlFHYvG 246 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELY--RILKRGGRLFHYVG 246 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHH--HHcCcCCcEEEEeC
Confidence 99999999643 1 23 34445554 68999999874433
No 99
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.7e-10 Score=111.12 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+++|||+|||+|.+++.++..|+.+|+++|.++.++ ..++...+..+...+++++.+|+.+.. . .+.||
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~e~lp-------~-~~~FD 191 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGIEQLP-------A-LKAFD 191 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCHHHCC-------C-cCCcC
Confidence 46889999999999999999888887899999999987 554443333333446899999987652 1 46899
Q ss_pred EEEEC-CCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 234 YMSVT-PPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 234 lV~~d-PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|++. --|+..+....++.+. +.|+|||.++++.
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~--~~LkpGG~lvl~~ 226 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLK--DQLVPGGELVLET 226 (322)
T ss_pred EEEECChhhccCCHHHHHHHHH--HhcCCCcEEEEEE
Confidence 99984 3344455667777765 4899999999875
No 100
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.21 E-value=9e-11 Score=110.65 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.+|.+|||+|||.|.+++.++++ |+ +|++|.++++.. +.+++.++..|+.+++++...|..++. ++|
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~~----------~~f 128 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDLP----------GKF 128 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-------------S-
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeeccccC----------CCC
Confidence 47899999999999999999987 76 799999999998 999999999999999999999987652 589
Q ss_pred cEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.|++=-.+ +. ..+...++.+. ++|+|||++++...
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~--~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKIS--RLLKPGGRLVLQTI 167 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHH--HHSETTEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHH--HhcCCCcEEEEEec
Confidence 998863222 22 35778888776 48999999997654
No 101
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.21 E-value=3.7e-10 Score=103.52 Aligned_cols=104 Identities=10% Similarity=-0.019 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.+|||+|||+|..++.++++ ...+++++|+++.++ +.|+++++..+...+++++++|+.+.. .+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 122 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN 122 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence 5679999999999999887764 234799999999999 999999987776667899999987652 246
Q ss_pred ccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+|++.-..+.. +...+++.+. +.|+|||.+++...
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~--~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIY--EGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHH--HhcCCCeEEEEeec
Confidence 8998876443322 2244555554 58999999998765
No 102
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.20 E-value=1.6e-10 Score=104.00 Aligned_cols=100 Identities=16% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++|++.+++.+ ++++.+|+.+.+. ..++||
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~fD 146 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGWP-------AYAPFD 146 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCCC-------cCCCcC
Confidence 357899999999999998666654 4799999999998 99999999998865 8999999754321 136799
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++.+.. .+ .+.+. +.|+|||++++...
T Consensus 147 ~I~~~~~~~--~~---~~~l~--~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP--EI---PRALL--EQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch--hh---hHHHH--HhcCCCcEEEEEEc
Confidence 999987542 22 23333 37999999998776
No 103
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.20 E-value=1.5e-10 Score=106.64 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+|||+|||+|.++..++..|. +|+++|+++.++ +.++++.. ...++++|+.+.. ..+++||+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l-~~a~~~~~------~~~~~~~d~~~~~-------~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPML-AQARQKDA------ADHYLAGDIESLP-------LATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHH-HHHHhhCC------CCCEEEcCcccCc-------CCCCcEEE
Confidence 467999999999999987777764 799999999999 99988743 1357888986532 23468999
Q ss_pred EEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 235 MSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 235 V~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|+++.++.. .+....+..+. ++|+|||++++.......
T Consensus 107 V~s~~~l~~~~d~~~~l~~~~--~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 107 AWSNLAVQWCGNLSTALRELY--RVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEECchhhhcCCHHHHHHHHH--HHcCCCeEEEEEeCCCCc
Confidence 999876543 35666677665 589999999988755433
No 104
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=3.4e-10 Score=105.54 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|..++.++.. |. .+|+++|+++.++ +.|++|.+.+++. +++++.+|+.+.. ..++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~~~l~-------~~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEIEALP-------VADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcchhhCC-------CCCCc
Confidence 36889999999999988766553 44 3799999999999 9999999998885 5899999986531 23468
Q ss_pred ccEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||+|+.+.-++. .+....++.+. ++|+|||++++..
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~--r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAF--RVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHH--HHcCCCcEEEEEE
Confidence 999998864432 34566677665 5899999999853
No 105
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.19 E-value=3.4e-11 Score=92.65 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=70.6
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
||+|||+|..+..+++.+..+|+++|+++.++ +.++++....+ +.++.+|+.++ +..+++||+|++.-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~----~~~~~~d~~~l-------~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEG----VSFRQGDAEDL-------PFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTST----EEEEESBTTSS-------SS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccC----chheeehHHhC-------cccccccccccccc
Confidence 89999999999988888666899999999998 99988776433 55889998765 33468999999864
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
-+.. .+....++.+. |+|+|||++++
T Consensus 69 ~~~~~~~~~~~l~e~~--rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLHHLEDPEAALREIY--RVLKPGGRLVI 95 (95)
T ss_dssp HGGGSSHHHHHHHHHH--HHEEEEEEEEE
T ss_pred ceeeccCHHHHHHHHH--HHcCcCeEEeC
Confidence 3322 35566666665 68999999986
No 106
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.18 E-value=3.9e-11 Score=115.19 Aligned_cols=129 Identities=17% Similarity=0.227 Sum_probs=98.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+++.|||+|||||.+++.+++.|+.+|++||.+.-+ +.|++.++.|++++.++++++.+++.. +| -++.|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~-----LP--~eKVD 129 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIE-----LP--VEKVD 129 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEe-----cC--cccee
Confidence 5799999999999999999999999999999999865 799999999999999999999998872 11 47899
Q ss_pred EEEECCCCCCc-cHHHHHHHHH--HcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 234 YMSVTPPYTAV-DYEVLMAQIS--KSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 234 lV~~dPPy~~~-~~~~~l~~L~--~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+|+..-. +.. .++..++.+. .-+||+|||.++-... ++. +..+.+..|-+.++.||.+
T Consensus 130 iIvSEWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a---~l~-----l~~i~d~~~~~~~i~fW~~ 190 (346)
T KOG1499|consen 130 IIVSEWM-GYFLLYESMLDSVLYARDKWLKEGGLIYPDRA---TLY-----LAAIEDDSYKDDKIGFWDD 190 (346)
T ss_pred EEeehhh-hHHHHHhhhhhhhhhhhhhccCCCceEccccc---eEE-----EEeccCchhhhhhcCcccc
Confidence 9999732 111 3566666653 2379999999986543 221 2234555666666776653
No 107
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.18 E-value=4.3e-10 Score=108.01 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++++|||+|||+|.++..++..|+.+|++||.++.++ ..++...+..+...++.+...++.+.. ....||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml-~q~~~~~~~~~~~~~v~~~~~~ie~lp--------~~~~FD 190 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL-CQFEAVRKLLDNDKRAILEPLGIEQLH--------ELYAFD 190 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHHhccCCCeEEEECCHHHCC--------CCCCcC
Confidence 56899999999999999988888888899999999998 665443333333346788888876642 125799
Q ss_pred EEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-- |+..+....+..+. +.|+|||.++++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~--r~LkpGG~Lvletl 226 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLK--HQLVIKGELVLETL 226 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHH--HhcCCCCEEEEEEE
Confidence 9998643 44445666777775 58999999998753
No 108
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=106.03 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.++..++.+. ..+|+++|+++.++ +.|+++ +++++++|+.++. ..++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~--------~~~~~~~d~~~~~--------~~~~f 90 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER--------GVDARTGDVRDWK--------PKPDT 90 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc--------CCcEEEcChhhCC--------CCCCc
Confidence 357899999999999998887762 34799999999999 888763 2678899987652 13689
Q ss_pred cEEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|+++..++. .+....+..+. +.|+|||++++...
T Consensus 91 D~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVPEHADLLVRWV--DELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCCCHHHHHHHHH--HhCCCCcEEEEEcC
Confidence 99999876543 35566666664 58999999998754
No 109
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.15 E-value=4.4e-10 Score=103.80 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.. +..+|+++|+++.++ +.|+++. .+++++.+|+.++. ...+||
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~------~~~~~~~~d~~~~~--------~~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRL------PDCQFVEADIASWQ--------PPQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhC------CCCeEEECchhccC--------CCCCcc
Confidence 5789999999999999887765 345899999999999 9998874 23778999987653 135899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++..++. .+....++.+. +.|+|||++++..+
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLV--SLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHH--HhcCCCcEEEEECC
Confidence 9999977643 35566677665 58999999998754
No 110
>PRK03612 spermidine synthase; Provisional
Probab=99.15 E-value=3.1e-10 Score=115.84 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHh-----CCC-CceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWT-----GFL-DVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~-----gl~-~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
+.++|||+|||+|.++.++++.+. .+|++||+|++++ +.+++|.... .++ ++++++.+|+.+++...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----- 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----- 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence 568999999999999999888754 7999999999999 9999964221 222 47999999999987653
Q ss_pred CCCCccEEEECCCCCCc-----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAV-----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~-----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.++||+|++|+|.... . .++.++.+. +.|+|||++++...
T Consensus 371 -~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~--~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 -AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK--RRLAPDGLLVVQST 416 (521)
T ss_pred -CCCCCEEEEeCCCCCCcchhccchHHHHHHHH--HhcCCCeEEEEecC
Confidence 3689999999876432 1 134555554 48999999998654
No 111
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.15 E-value=2e-10 Score=110.53 Aligned_cols=123 Identities=15% Similarity=0.076 Sum_probs=79.7
Q ss_pred ceE-EecCCCCCC--CCChHHHHHHHHHHHhhcC-CCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHH
Q 021116 118 RKK-LLSPKGMDV--RPMMEVVKGAAFDILQSAG-GCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVS 192 (317)
Q Consensus 118 G~~-l~~p~~~~~--rpt~~~v~~alf~~L~~~~-~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~ 192 (317)
|.. +..|.++-. -|........+.+.|.... +.-....+.++||+|||+|.+...++.+ ...+++++|+|+.++
T Consensus 73 gl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al- 151 (321)
T PRK11727 73 GVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL- 151 (321)
T ss_pred CCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-
Confidence 444 256665531 2323333344555554310 0000124689999999999777655443 334799999999999
Q ss_pred HHHHHhHHHh-CCCCceEEEE-ecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 193 NVLIPNLEWT-GFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 193 ~~ar~N~~~~-gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
+.|++|++.| ++.++++++. .|..+++.... ...+.||+|++||||...
T Consensus 152 ~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~---~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 152 ASAQAIISANPGLNGAIRLRLQKDSKAIFKGII---HKNERFDATLCNPPFHAS 202 (321)
T ss_pred HHHHHHHHhccCCcCcEEEEEccchhhhhhccc---ccCCceEEEEeCCCCcCc
Confidence 9999999999 8988888864 45554443211 124689999999999754
No 112
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=105.40 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
|.+.+++++.+..... .....|+|.+||.|.-++..+..|+ .|++||+||.-+ .+|++|++..|+.++|+|+
T Consensus 77 Tpe~ia~~iA~~v~~~------~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikI-a~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVAC------MNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKI-ACARHNAEVYGVPDRITFI 148 (263)
T ss_pred ccHHHHHHHHHHHHHh------cCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHH-HHHhccceeecCCceeEEE
Confidence 4456666666554432 2457899999999999999888876 699999999999 9999999999999999999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~ 245 (317)
+||+.+....+. .....+|+||+.||++...
T Consensus 149 ~GD~ld~~~~lq---~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 149 CGDFLDLASKLK---ADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred echHHHHHHHHh---hhhheeeeeecCCCCCCcc
Confidence 999988765542 2234588999999997643
No 113
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.14 E-value=5.3e-10 Score=104.58 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|..+..++.....+|+++|+++.++ +.|+++... .++++++.+|+.+. +..+++||
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~D~~~~-------~~~~~~FD 119 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEANDILKK-------DFPENTFD 119 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEECCcccC-------CCCCCCeE
Confidence 36789999999999998877654334799999999998 999987653 35689999997642 12346899
Q ss_pred EEEECCC-CCCc--cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPP-YTAV--DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPP-y~~~--~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+|++..- ++.. +...+++.+. ++|+|||++++....
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~--r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCY--KWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHH--HHcCCCcEEEEEEec
Confidence 9998432 2222 3455666554 589999999987653
No 114
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.14 E-value=5.8e-10 Score=106.22 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+...+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.++ +.+++|++..+..++++++++
T Consensus 22 ~~i~~~Iv~~~~~-------~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li-~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 22 PLVLDKIVEKAAI-------KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMV-AELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred HHHHHHHHHhcCC-------CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHHHhcCCCCcEEEEEC
Confidence 3455555555433 367899999999999999888875 4799999999998 999999988775567999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.+.. ...||.|+.|+||..
T Consensus 93 Dal~~~---------~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 93 DALKTE---------FPYFDVCVANVPYQI 113 (294)
T ss_pred CHhhhc---------ccccCEEEecCCccc
Confidence 997642 246899999999974
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=3.7e-09 Score=99.16 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++|||+|||+|.++.++++.+ ..+++++|+|+.++ +.+++++...+ + ..+++++.+|+.+++... .+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~ 144 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------EN 144 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhC------CC
Confidence 45699999999999998888765 57899999999998 99999876543 1 246889999999887653 36
Q ss_pred CccEEEECCCCCCcc-----HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVD-----YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~-----~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|++..... ..+.++.+. ++|+|||++++...
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~--~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLK--KALNEDGIFVAQSE 187 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHH--HHhCCCcEEEEcCC
Confidence 899999998743221 244555554 48999999998743
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=7.2e-10 Score=84.37 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=77.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+++|+|||+|.++..++.....+++++|.++.++ +.++++.+..+. .+++++.+|+.+.... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALLA-DNVEVLKGDAEELPPE------ADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhcccc-cceEEEEcChhhhccc------cCCceEEEEE
Confidence 4899999999999887765566899999999998 888865444443 4589999998876531 1367999999
Q ss_pred CCCCCC--ccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 238 TPPYTA--VDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 238 dPPy~~--~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
++++.. ......++.+. +.++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~--~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEAR--RLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHH--HHcCCCCEEEEE
Confidence 998753 24455566554 378999999886
No 117
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.8e-10 Score=104.50 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=88.6
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|+|.|+|||.++..++. .| ..+|+.+|+.++.+ +.|++|++.+++.|++++..+|+.+... ...
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~ 163 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDRVTLKLGDVREGID--------EED 163 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccceEEEecccccccc--------ccc
Confidence 5799999999999999987663 34 36899999999998 9999999999999889999999987653 358
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
||.||+|.|--+ +.++.+.+ .|+|||.+++..+..+++.
T Consensus 164 vDav~LDmp~PW----~~le~~~~--~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 164 VDAVFLDLPDPW----NVLEHVSD--ALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred cCEEEEcCCChH----HHHHHHHH--HhCCCcEEEEEcCCHHHHH
Confidence 999999987432 34555543 6899999999988766654
No 118
>PRK08317 hypothetical protein; Provisional
Probab=99.11 E-value=1.7e-09 Score=97.02 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|.....+..++..+.. .++.+|||+|||+|.++..++... ..+++++|.++.++ +.++++... ...++
T Consensus 2 ~~~~~~~~~~~~~~~~-------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~ 71 (241)
T PRK08317 2 PDFRRYRARTFELLAV-------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNV 71 (241)
T ss_pred chHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCce
Confidence 4445556666665543 357899999999999999877653 35899999999998 999988432 23458
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+++.+|+.+.. ...+.||+|+++-.+. ..+....++.+. ++|+|||.+++...
T Consensus 72 ~~~~~d~~~~~-------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~ 125 (241)
T PRK08317 72 EFVRGDADGLP-------FPDGSFDAVRSDRVLQHLEDPARALAEIA--RVLRPGGRVVVLDT 125 (241)
T ss_pred EEEecccccCC-------CCCCCceEEEEechhhccCCHHHHHHHHH--HHhcCCcEEEEEec
Confidence 89999876532 1246899999875442 235566777665 48999999987654
No 119
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=7.7e-10 Score=104.43 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=88.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+|.+|||+|||-|.+++.++.+-..+|+++++|++.. +.+++-++..|++++++++-.|..++. +.||
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~----------e~fD 139 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFE----------EPFD 139 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccc----------cccc
Confidence 47999999999999999999887444799999999998 999999999999988999999988763 5699
Q ss_pred EEEECCCCC---CccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYT---AVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~---~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
-|++=-.|. ...+...++.+. ++|+|||.+++..-..
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~--~~L~~~G~~llh~I~~ 179 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVY--ALLKPGGRMLLHSITG 179 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHH--hhcCCCceEEEEEecC
Confidence 999744442 235788888776 4999999999876544
No 120
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.11 E-value=2.6e-10 Score=90.71 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=68.3
Q ss_pred EEEECCCcchHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 159 WLDLYSGTGSVGIEAISR---GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~---Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
|||+|||+|.....++.. |. .+++++|+|++++ +.++++....+. +++++++|+.++.. . .++||+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~l~~-~------~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARDLPF-S------DGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTCHHH-H------SSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhHCcc-c------CCCeeE
Confidence 799999999999987765 32 6899999999999 999999987766 48999999988542 2 479999
Q ss_pred EEE-CCCCCCc---cHHHHHHHHHHcCCcCCCe
Q 021116 235 MSV-TPPYTAV---DYEVLMAQISKSALVGKDS 263 (317)
Q Consensus 235 V~~-dPPy~~~---~~~~~l~~L~~~~lLkpgG 263 (317)
|++ ...+..- ..+.+++.+. ++|+|||
T Consensus 71 v~~~~~~~~~~~~~~~~~ll~~~~--~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLHHLSPEELEALLRRIA--RLLRPGG 101 (101)
T ss_dssp EEE-TTGGGGSSHHHHHHHHHHHH--HTEEEEE
T ss_pred EEEcCCccCCCCHHHHHHHHHHHH--HHhCCCC
Confidence 999 4322221 3455666665 4889887
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=1.5e-09 Score=104.60 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||+|.+++.+++... .+|+++|+++.++ +.|++|++.+|++ +++++++|+.+.... ...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~ 149 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAP 149 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCC
Confidence 3578999999999999988776432 3699999999999 9999999999985 589999998664321 257
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|+++.. . ....+.+. +.|++||.+++...
T Consensus 150 fD~Ii~~~g--~---~~ip~~~~--~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 150 YDVIFVTVG--V---DEVPETWF--TQLKEGGRVIVPIN 181 (322)
T ss_pred ccEEEECCc--h---HHhHHHHH--HhcCCCCEEEEEeC
Confidence 999999842 1 12222222 26899999988654
No 122
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.09 E-value=6.6e-10 Score=100.31 Aligned_cols=103 Identities=18% Similarity=0.076 Sum_probs=80.8
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
++|||+|||+|.+++.+++.. ..+|+++|+++.++ +.++++++..|+.++++++.+|+.+.. ..++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~~--------~~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKDP--------FPDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccCC--------CCCCCCEe
Confidence 379999999999998887653 34799999999998 999999999999888999999975431 12579999
Q ss_pred EECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 236 SVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.-.+ +..+....++.+. ++|+|||++++...
T Consensus 72 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 105 (224)
T smart00828 72 FGFEVIHHIKDKMDLFSNIS--RHLKDGGHLVLADF 105 (224)
T ss_pred ehHHHHHhCCCHHHHHHHHH--HHcCCCCEEEEEEc
Confidence 974322 2234566777765 58999999998654
No 123
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.09 E-value=1.3e-09 Score=98.61 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii 211 (317)
..+.+++.+++++... ..++.+|||+|||+|.++..++..+. +|+++|+++.++ +.|++++...+..+++++.
T Consensus 37 ~~~~~~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~~ 109 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMV-QMARNRAQGRDVAGNVEFE 109 (219)
T ss_pred HHHHHHHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCCCCceEEE
Confidence 3455666777777531 14578999999999999998888765 799999999999 9999999887775679999
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEE-CCCCCC--ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSV-TPPYTA--VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~-dPPy~~--~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
.+|+.+. .++||+|++ +.-+.. ......+..+. +++++++++.
T Consensus 110 ~~d~~~~----------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~--~~~~~~~~i~ 155 (219)
T TIGR02021 110 VNDLLSL----------CGEFDIVVCMDVLIHYPASDMAKALGHLA--SLTKERVIFT 155 (219)
T ss_pred ECChhhC----------CCCcCEEEEhhHHHhCCHHHHHHHHHHHH--HHhCCCEEEE
Confidence 9998753 267999987 322221 12334444443 3556554443
No 124
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.5e-09 Score=92.44 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
....++|+|||||.++-.+++. +.....+.|+||+|+ +..++.++.|+.. +..++.|+...+. .++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~--~~~V~tdl~~~l~--------~~~V 111 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVH--IDVVRTDLLSGLR--------NESV 111 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCc--cceeehhHHhhhc--------cCCc
Confidence 3678999999999999776664 345789999999998 9999999998874 7789999887764 3789
Q ss_pred cEEEECCCCCCcc------------------HHHHHHHHH--HcCCcCCCeEEEEEeCCCCCcccc-----CCCe--EEE
Q 021116 233 DYMSVTPPYTAVD------------------YEVLMAQIS--KSALVGKDSFIVVEYPLRTDMLDT-----CGCL--VKI 285 (317)
Q Consensus 233 DlV~~dPPy~~~~------------------~~~~l~~L~--~~~lLkpgG~ivv~~~~~~~l~~~-----~~~~--~~~ 285 (317)
|+++.||||-... -.+.++.+. -..+|.|.|++|+..-......+. ..+| .+.
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 9999999996421 122333332 124889999999876655443311 1222 345
Q ss_pred EEeecCceEEEEEee
Q 021116 286 KDRRFGRTHLAIYGP 300 (317)
Q Consensus 286 ~~r~yG~~~l~~~~p 300 (317)
.+|+.|...+.++.-
T Consensus 192 ~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 192 MQRKAGGETLSILKF 206 (209)
T ss_pred EEEecCCceEEEEEE
Confidence 667788777776643
No 125
>PRK04266 fibrillarin; Provisional
Probab=99.08 E-value=2.2e-09 Score=98.64 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||+|||+|.+++.++.. +..+|+++|++++++ +.+.++++.. +++.++.+|+.+..... .-.++|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~~~~ 142 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARKPERYA----HVVEKV 142 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCCcchhh----hccccC
Confidence 36789999999999999988765 234799999999998 8888887643 34788999986421000 012569
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+|+.|.+.. ......++.+. +.|+|||.+++.
T Consensus 143 D~i~~d~~~p-~~~~~~L~~~~--r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVAQP-NQAEIAIDNAE--FFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCCCh-hHHHHHHHHHH--HhcCCCcEEEEE
Confidence 9999986421 12223344443 589999999984
No 126
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.08 E-value=1.6e-09 Score=108.81 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.+++.+++....+|+++|+++.++ +.|++|.. +..++++++.+|+.+.. ..+++||+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~~fD~ 335 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAI--GRKCSVEFEVADCTKKT-------YPDNSFDV 335 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhh--cCCCceEEEEcCcccCC-------CCCCCEEE
Confidence 5789999999999999877765334799999999999 99999875 44456899999986531 12467999
Q ss_pred EEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|++.-.+ +..+....++.+. ++|+|||++++....
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFF--KWLKPGGKVLISDYC 371 (475)
T ss_pred EEECCcccccCCHHHHHHHHH--HHcCCCeEEEEEEec
Confidence 9986443 3345566777765 589999999987643
No 127
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=97.59 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++..+ ..+++++|+++.++ +.+++|+...+..++++++.+|+.+.. ...+.|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~ 122 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEALP-------FPDNSF 122 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEecccccCC-------CCCCCc
Confidence 56899999999999999887766 36899999999999 999999987766667899999987642 124689
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
|+|+++--.. ..+....++.+. ++|++||++++..
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~--~~L~~gG~li~~~ 158 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMY--RVLKPGGRLVILE 158 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHH--HhccCCcEEEEEE
Confidence 9999753211 224566666665 4899999987653
No 128
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.07 E-value=1.2e-09 Score=102.66 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++|+.. ++++++++
T Consensus 28 ~~i~~~i~~~l~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~ 94 (272)
T PRK00274 28 ENILDKIVDAAGP-------QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLA-PILAETFAE----DNLTIIEG 94 (272)
T ss_pred HHHHHHHHHhcCC-------CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHH-HHHHHhhcc----CceEEEEC
Confidence 3455666666543 3578999999999999999888875 799999999998 999988742 46899999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHH
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQI 253 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L 253 (317)
|+.++... +..+|.|+.||||... ..++..+
T Consensus 95 D~~~~~~~-------~~~~~~vv~NlPY~is--s~ii~~~ 125 (272)
T PRK00274 95 DALKVDLS-------ELQPLKVVANLPYNIT--TPLLFHL 125 (272)
T ss_pred hhhcCCHH-------HcCcceEEEeCCccch--HHHHHHH
Confidence 98875211 1115999999999743 3344444
No 129
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=1.8e-09 Score=106.29 Aligned_cols=109 Identities=9% Similarity=0.060 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..+||+|||+|.+.+.++.+. ...++|+|+++.++ +.|.+++..+|+.| +.++++|+..++..+ .++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLKN-LLIINYDARLLLELL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCCc-EEEEECCHHHhhhhC-----CCCcee
Confidence 45689999999999999987763 34699999999999 99999999999865 999999998765433 357899
Q ss_pred EEEECCCCC--CccH-----HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYT--AVDY-----EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~--~~~~-----~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.|+++.|.. +... +..++.+. ++|++||.+.+.++..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~--RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEAL--RVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHH--HHcCCCcEEEEEEECH
Confidence 999976532 2221 34455544 6899999999977644
No 130
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.06 E-value=4.5e-10 Score=107.41 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+..++.|||+|||+|.++..|+..|+++|++||.+..+ +.|+.-++.|++.++|+++.|.+++.. -.++.
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA--qyA~~Lv~~N~~~~rItVI~GKiEdie--------LPEk~ 244 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA--QYARKLVASNNLADRITVIPGKIEDIE--------LPEKV 244 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHH--HHHHHHHhcCCccceEEEccCcccccc--------Cchhc
Confidence 46799999999999999999999999999999999855 899999999999999999999998863 14789
Q ss_pred cEEEECCC-CCCccHHHHHHH-HHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPP-YTAVDYEVLMAQ-ISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPP-y~~~~~~~~l~~-L~~~~lLkpgG~ivv~~~ 270 (317)
|+||..|. |...+ +..++. +.+.++|+|+|..+-...
T Consensus 245 DviISEPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 245 DVIISEPMGYMLVN-ERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred cEEEeccchhhhhh-HHHHHHHHHHHhhcCCCCcccCccc
Confidence 99999985 22111 344443 335589999999876554
No 131
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.06 E-value=9.9e-10 Score=96.67 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--CCCceEEEEecHHHHH-HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVETFL-ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l~~~v~ii~gD~~~~l-~~~~~~~~~~ 229 (317)
.++.+|||||||+|..|+.++.. ++.+|++-|.++ .+ +.++.|++.|+ ..+++.+..-|..+.. .... ..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~ 117 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EP 117 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHH----S-
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCccccccc----cc
Confidence 57899999999999999998887 677999999999 88 99999999988 5566777777654422 1111 23
Q ss_pred CCccEEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 230 GPFDYMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 230 ~~fDlV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
.+||+|+ .|-=|....++.+++.+.. ++++++.+++.+..+.
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~--ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKR--LLKPNGKVLLAYKRRR 160 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHH--HBTT-TTEEEEEE-S-
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHH--HhCCCCEEEEEeCEec
Confidence 5899999 5887877778888888764 7899888888887663
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.06 E-value=2.4e-09 Score=97.26 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
+...+.+.|.. .++.+|||+|||||..+..++.. |. .+|++||+++..+ +.|++|++.+++. +++++.+
T Consensus 60 ~~a~~l~~L~l-------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~-nv~~~~g 130 (209)
T PF01135_consen 60 MVARMLEALDL-------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID-NVEVVVG 130 (209)
T ss_dssp HHHHHHHHTTC--------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH-SEEEEES
T ss_pred HHHHHHHHHhc-------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC-ceeEEEc
Confidence 34455566654 47899999999999999766554 32 3699999999998 9999999999986 4999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
|....... ..+||.|+++..... ....+++ .|++||++++-...
T Consensus 131 dg~~g~~~-------~apfD~I~v~~a~~~-ip~~l~~------qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 131 DGSEGWPE-------EAPFDRIIVTAAVPE-IPEALLE------QLKPGGRLVAPIGQ 174 (209)
T ss_dssp -GGGTTGG-------G-SEEEEEESSBBSS---HHHHH------TEEEEEEEEEEESS
T ss_pred chhhcccc-------CCCcCEEEEeeccch-HHHHHHH------hcCCCcEEEEEEcc
Confidence 98764422 367999999864321 1223332 58999999987764
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.06 E-value=1.2e-09 Score=98.11 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=76.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..++||+|||.|.-++.++++|. .|+++|+|+.++ +.+++-++..+++ ++....|+.++.- .+.||
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~~~~--------~~~yD 96 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLNDFDF--------PEEYD 96 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCCBS---------TTTEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchhccc--------cCCcC
Confidence 4578999999999999999999998 599999999999 8888888888875 8889999876531 36799
Q ss_pred EEEECCC--CCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPP--YTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPP--y~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-- |-. ...+.+++.+.+ .++|||++++++.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~--~~~pGG~~li~~~ 134 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKA--ATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHH--TEEEEEEEEEEEE
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHh--hcCCcEEEEEEEe
Confidence 9986422 211 245667777764 7999999887654
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-09 Score=98.83 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
.+...|.. .++.+|||+|||||..+--+++... +|+.+|+++.-+ +.|++|++.+|+.| +.++++|....
T Consensus 63 ~m~~~L~~-------~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~-~~A~~~L~~lg~~n-V~v~~gDG~~G 132 (209)
T COG2518 63 RMLQLLEL-------KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELA-EQARRNLETLGYEN-VTVRHGDGSKG 132 (209)
T ss_pred HHHHHhCC-------CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHH-HHHHHHHHHcCCCc-eEEEECCcccC
Confidence 45566654 4789999999999999876666543 899999999998 99999999999977 99999998765
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
... ..+||.|++..-.. ..-+.++++ |++||++++-..
T Consensus 133 ~~~-------~aPyD~I~Vtaaa~-~vP~~Ll~Q------L~~gGrlv~PvG 170 (209)
T COG2518 133 WPE-------EAPYDRIIVTAAAP-EVPEALLDQ------LKPGGRLVIPVG 170 (209)
T ss_pred CCC-------CCCcCEEEEeeccC-CCCHHHHHh------cccCCEEEEEEc
Confidence 432 36899999864211 112444544 799999998776
No 135
>PLN02366 spermidine synthase
Probab=99.05 E-value=1.4e-08 Score=97.47 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHh--CCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~--gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||++|||.|.+..++++. +..+|+.||+|+.++ +.+++.+... +++ ++++++.+|+..++... .++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~~ 164 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PEG 164 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cCC
Confidence 5789999999999999988875 356899999999999 9999987653 233 58999999999988643 136
Q ss_pred CccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|.+-..+ . ..+.++.+. +.|+|||++++...
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~--~~L~pgGvlv~q~~ 207 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVA--RALRPGGVVCTQAE 207 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHH--HhcCCCcEEEECcC
Confidence 79999998643211 1 234555554 48999999987543
No 136
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.05 E-value=4e-09 Score=95.18 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
.+.+...+++++.... ..++.+|||+|||+|.++..+++.+. +|+++|+++.++ +.|++++...+..++++++.
T Consensus 45 ~~~~~~~~~~~l~~~~----~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~ 118 (230)
T PRK07580 45 HQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMV-EEARERAPEAGLAGNITFEV 118 (230)
T ss_pred HHHHHHHHHHHHHhcC----CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHH-HHHHHHHHhcCCccCcEEEE
Confidence 3445556666665411 13578999999999999998888876 599999999999 99999998888766789999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCC-CC--ccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPY-TA--VDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~--~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
+|+... .++||+|++.-.+ +. ......++.+.. ++ +++.++.
T Consensus 119 ~d~~~~----------~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~--~~-~~~~~i~ 163 (230)
T PRK07580 119 GDLESL----------LGRFDTVVCLDVLIHYPQEDAARMLAHLAS--LT-RGSLIFT 163 (230)
T ss_pred cCchhc----------cCCcCEEEEcchhhcCCHHHHHHHHHHHHh--hc-CCeEEEE
Confidence 994321 3679999975433 21 133445555542 33 4444443
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.04 E-value=2.7e-10 Score=105.74 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC-----ceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD-----VSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~-----~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.|.+|||+|||+|.++..+++.|+ .|+|||.++.++ +.|++.....-..+ ++++...|++.. .
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~ 156 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T 156 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence 468899999999999999999986 699999999999 99999865544433 255666676654 3
Q ss_pred CCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||.|++---+. ..+..+.++.+.+ +|+|||.+++..-.++-+
T Consensus 157 ~~fDaVvcsevleHV~dp~~~l~~l~~--~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHVKDPQEFLNCLSA--LLKPNGRLFITTINRTIL 201 (282)
T ss_pred cccceeeeHHHHHHHhCHHHHHHHHHH--HhCCCCceEeeehhhhHH
Confidence 6799999853221 1234556666654 899999999998766543
No 138
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.03 E-value=1e-09 Score=102.39 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..+.+.+.+.+.. .++.+|||+|||+|.++..++.++ .+|+++|+|+.++ +.+++|++. .++++++++
T Consensus 15 ~~~~~~iv~~~~~-------~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~-~~l~~~~~~---~~~v~ii~~ 82 (258)
T PRK14896 15 DRVVDRIVEYAED-------TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLA-EFLRDDEIA---AGNVEIIEG 82 (258)
T ss_pred HHHHHHHHHhcCC-------CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHH-HHHHHHhcc---CCCEEEEEe
Confidence 4455666665543 357899999999999999988885 4799999999998 999988764 246999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
|+.++. ...||.|+.|+||..
T Consensus 83 D~~~~~---------~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 83 DALKVD---------LPEFNKVVSNLPYQI 103 (258)
T ss_pred ccccCC---------chhceEEEEcCCccc
Confidence 987642 145899999999975
No 139
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.03 E-value=4.2e-09 Score=102.19 Aligned_cols=118 Identities=11% Similarity=0.014 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i 210 (317)
..+.++..+++.+... .++.+|||+|||+|.+++.+++. +..+|+++|.++.++ +.|++|... +++++
T Consensus 96 ~~e~~r~~~l~~~~l~------~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~----~~i~~ 164 (340)
T PLN02490 96 WTEDMRDDALEPADLS------DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPL----KECKI 164 (340)
T ss_pred chHHHHHHHHhhcccC------CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhc----cCCeE
Confidence 3455555555444321 35679999999999999877654 445899999999999 999988652 24788
Q ss_pred EEecHHHHHHHHhhhcCCCCCccEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 211 HTVRVETFLERAEQFVGKDGPFDYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 211 i~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+.+.. ...+.||+|+++.... ..+.+..++.+. ++|+|||.+++..
T Consensus 165 i~gD~e~lp-------~~~~sFDvVIs~~~L~~~~d~~~~L~e~~--rvLkPGG~LvIi~ 215 (340)
T PLN02490 165 IEGDAEDLP-------FPTDYADRYVSAGSIEYWPDPQRGIKEAY--RVLKIGGKACLIG 215 (340)
T ss_pred EeccHHhCC-------CCCCceeEEEEcChhhhCCCHHHHHHHHH--HhcCCCcEEEEEE
Confidence 999987641 2346899999976543 234556666665 5899999987754
No 140
>PLN03075 nicotianamine synthase; Provisional
Probab=99.03 E-value=3.8e-09 Score=100.56 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcchH-HHHHH-Hc-CCCEEEEEeCCHHHHHHHHHHhHHH-hCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSV-GIEAI-SR-GCSEVHFVEMDPWVVSNVLIPNLEW-TGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l-~Ieaa-s~-Ga~~V~aVDin~~al~~~ar~N~~~-~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.+++|+|+|||.|.+ ++.++ .. ...+++++|+|++++ +.|+++++. .++.++++|..+|+.+.... .+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTES-------LK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhcccc-------cC
Confidence 578999999998744 33333 22 345799999999999 999999964 88888999999999875321 26
Q ss_pred CccEEEECCCC--CCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPY--TAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy--~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.||+||++-=. .+....++++.+. +.|+|||++++..
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~--~~LkPGG~Lvlr~ 233 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLG--KHMAPGALLMLRS 233 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHH--HhcCCCcEEEEec
Confidence 79999998321 1357788888887 4899999999985
No 141
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.02 E-value=5e-09 Score=103.23 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.+++.+++....+|+++|++++++ +.|+++++ ++ .+++...|+.+. .++||
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~v~~~~~D~~~l----------~~~fD 230 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--PVEIRLQDYRDL----------NGQFD 230 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--eEEEEECchhhc----------CCCCC
Confidence 36789999999999999988775334799999999999 99999885 33 277888887543 26899
Q ss_pred EEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 234 YMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 234 lV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.|++...+.. ..++..++.+. ++|+|||++++....
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~--r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVR--RCLKPDGLFLLHTIG 269 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHH--HHcCCCcEEEEEEcc
Confidence 9998655432 13456666665 589999999987643
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.02 E-value=5.3e-09 Score=95.06 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+++.++ +++++|.++.++ +.+++|+...+. +++++..|+.++.... .+.||
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~fD 116 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAEH------PGQFD 116 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhhc------CCCcc
Confidence 4678999999999999988888775 699999999998 999999887765 3788889987765321 36899
Q ss_pred EEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.-.+. ..+...+++.+. ++|++||++++...
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~--~~L~~gG~l~v~~~ 152 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACA--KLVKPGGLVFFSTL 152 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHH--HHcCCCcEEEEEec
Confidence 999864432 234566666665 48999999998754
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=3.6e-09 Score=103.20 Aligned_cols=108 Identities=23% Similarity=0.317 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHH-----HhCC-CCceEEEEecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLE-----WTGF-LDVSSIHTVRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~-----~~gl-~~~v~ii~gD~~~~l~~~~~~~ 226 (317)
...++||++|||+|....++++.. ..+|++||+|++++ +.|+++.. ...+ .++++++.+|+.+++...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence 356799999999999888888754 57899999999999 99996311 1122 367999999999998653
Q ss_pred CCCCCccEEEECCCCCCc-----cH-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAV-----DY-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~-----~~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+.||+||+|.|-... .+ .+.++.+. +.|+|||++++...
T Consensus 224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~--~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIA--TFLTEDGAFVCQSN 269 (374)
T ss_pred --CCCccEEEEcCCCccccchhhhhHHHHHHHHH--HhcCCCcEEEEecC
Confidence 4689999999764221 22 44555554 48999999988754
No 144
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=6.9e-09 Score=99.81 Aligned_cols=120 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC----
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF---- 204 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl---- 204 (317)
.++..+...+.+.+++.... +.++.+|||+|||+|.+++.++.+|. +|+++|+++.++ +.+++|++..+.
T Consensus 122 ~~~~~~~~v~~~l~~l~~~~----~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml-~~A~~~~~~~~~~~~~ 195 (315)
T PLN02585 122 IRLGHAQTVEKVLLWLAEDG----SLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMV-AEAERRAKEALAALPP 195 (315)
T ss_pred cccChHHHHHHHHHHHHhcC----CCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhccccccc
Confidence 35555566667777775421 13578999999999999999888875 799999999999 999999876521
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCC-CCc--cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY-TAV--DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~--~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
..++++..+|+.++ +++||+|++.-.. +.. ....++..+. .+.++++++.
T Consensus 196 ~~~~~f~~~Dl~~l----------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~---~l~~g~liIs 248 (315)
T PLN02585 196 EVLPKFEANDLESL----------SGKYDTVTCLDVLIHYPQDKADGMIAHLA---SLAEKRLIIS 248 (315)
T ss_pred ccceEEEEcchhhc----------CCCcCEEEEcCEEEecCHHHHHHHHHHHH---hhcCCEEEEE
Confidence 13478888887543 3689999864221 211 1233444443 3456666553
No 145
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.01 E-value=3.4e-09 Score=98.23 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHhHHHhCCCCc--
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC------SEVHFVEMDPWVVSNVLIPNLEWTGFLDV-- 207 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga------~~V~aVDin~~al~~~ar~N~~~~gl~~~-- 207 (317)
+....++|.+ ..+.++||++||||-+++-.+.. +. .+|+.+|+||+++ +.+++.+...++.+.
T Consensus 89 Kd~~v~~L~p-------~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~ 160 (296)
T KOG1540|consen 89 KDMFVSKLGP-------GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSR 160 (296)
T ss_pred HHHhhhccCC-------CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCc
Confidence 3344455654 46799999999999999876642 22 6899999999999 999988877777654
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++++|+++. |.++.+||...+- |+-. +.++.++.. +|+|||||++.+-.-+.
T Consensus 161 ~~w~~~dAE~L-------pFdd~s~D~yTia--fGIRN~th~~k~l~EA--YRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 161 VEWVEGDAEDL-------PFDDDSFDAYTIA--FGIRNVTHIQKALREA--YRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eEEEeCCcccC-------CCCCCcceeEEEe--cceecCCCHHHHHHHH--HHhcCCCcEEEEEEccc
Confidence 88999998864 4567899988875 3322 345555543 58999999987544333
No 146
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.00 E-value=4.8e-09 Score=99.71 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=93.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..|++|||+|||.|..+..++.+|++.|+|+|-+...+ ...+-=.+..|.+..+..+..-+++. +. .+.||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~-~QF~~i~~~lg~~~~~~~lplgvE~L-------p~-~~~FD 184 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY-LQFEAIKHFLGQDPPVFELPLGVEDL-------PN-LGAFD 184 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH-HHHHHHHHHhCCCccEEEcCcchhhc-------cc-cCCcC
Confidence 68999999999999999999999999999999999876 44333223344433333332233332 12 37899
Q ss_pred EEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEeechh
Q 021116 234 YMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPDWA 303 (317)
Q Consensus 234 lV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~~~ 303 (317)
+||+ .-=|+..+--+.+..+.+ .|++||.+++++-.... ......+=+.+|.+..=.||-|+.+
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~--~L~~gGeLvLETlvi~g----~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKD--SLRPGGELVLETLVIDG----DENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHH--hhCCCCEEEEEEeeecC----CCceEEccCCcccCCCceEEeCCHH
Confidence 9996 445776666667777764 79999999998764332 2334445567888877677766654
No 147
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.99 E-value=4.4e-09 Score=99.98 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++++++++. ..+++++|. +.++ +.+++|++..|+.++++++.+|+.+.. -+.+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~~~~~---------~~~~D 217 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDIYKES---------YPEAD 217 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCccCCC---------CCCCC
Confidence 46799999999999999988764 347999998 7888 999999999999889999999986421 13479
Q ss_pred EEEECC-CCCCcc--HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTP-PYTAVD--YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dP-Py~~~~--~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++.- .+.... ...+++.+. +.|+|||++++...
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAF--DAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHH--HhcCCCCEEEEEEe
Confidence 887642 222211 234455544 58999999987753
No 148
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.98 E-value=9.9e-10 Score=104.35 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--------GCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--------Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
...|...+.+.+..++.. ..+.+|+|+|||+|.+.+++... ...+++|+|+++.++ .+|+.|+.
T Consensus 27 ~~~TP~~i~~l~~~~~~~-------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~ 98 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNP-------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLL 98 (311)
T ss_dssp GC---HHHHHHHHHHHTT--------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHH
T ss_pred eeehHHHHHHHHHhhhhc-------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhh
Confidence 345677788888888854 35778999999999999987652 345799999999998 99999998
Q ss_pred HhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc
Q 021116 201 WTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV 244 (317)
Q Consensus 201 ~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~ 244 (317)
..|.... ..+..+|....... .....||+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~-----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKF-----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSC-----TST--EEEEEEE--CTCE
T ss_pred hhcccccccccccccccccccc-----ccccccccccCCCCcccc
Confidence 7776533 35788886543211 013689999999999754
No 149
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.98 E-value=2.2e-09 Score=107.68 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=72.7
Q ss_pred CCeEEEECCCcchHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-----a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
+..|+|+|||+|.+...+++.| +.+|+|||.|+.|+ ..+++-++.++..++|+++++|++++.. ..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREVEL--------PE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCCCC--------CC
Confidence 6789999999999998776654 57999999999997 6666666889999999999999998742 36
Q ss_pred CccEEEECCC--CCC-ccHHHHHHHHHHcCCcCCCeEEE
Q 021116 231 PFDYMSVTPP--YTA-VDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 231 ~fDlV~~dPP--y~~-~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+.|+|+.-.- |+. ....+.++.. .++|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~--~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAA--DRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHG--GGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHH--HhhcCCCCEEe
Confidence 8999998653 211 1334555443 37999999976
No 150
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.97 E-value=1.2e-08 Score=91.79 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+|||+|||+|.++..++..+. .+++++|+++.++ +.++++.. ++++++.+|+.+.. ...++||
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAEKLP-------LEDSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchhhCC-------CCCCcee
Confidence 457899999999999998877653 4689999999998 88877654 24788999987642 1346899
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|+++-..+. .+....++.+. ++|+|||++++.....
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~--~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELA--RVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHH--HHcCCCcEEEEEeCCc
Confidence 9999755432 24566666665 5899999999876543
No 151
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.95 E-value=6.4e-09 Score=94.24 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.++..++.+. ..+|++||+++ +. +..+ ++++++|+.+.. ..+.. ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~~~-v~~i~~D~~~~~~~~~i~~-~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PIVG-VDFLQGDFRDELVLKALLE-RVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CCCC-cEEEecCCCChHHHHHHHH-HhCC
Confidence 357899999999999998887763 24799999988 21 1223 789999987642 11100 1124
Q ss_pred CCccEEEECC-CCCCcc----H-------HHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTP-PYTAVD----Y-------EVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dP-Py~~~~----~-------~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||+|++|+ |+..+. . +..++.+ .++|+|||.+++.....+.+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~--~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC--RDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHH--HHHcCCCCEEEEEEecCcCH
Confidence 6899999987 443221 1 2233333 36899999999966544443
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.95 E-value=9.8e-09 Score=95.56 Aligned_cols=112 Identities=17% Similarity=0.058 Sum_probs=81.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+|.+|||-|+|||+++..+++. | ..+|+..|.+++.+ +.|++|++.+|+.+++++.+.|+.+.-... .....
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~----~~~~~ 113 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDE----ELESD 113 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--ST----T-TTS
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccc----cccCc
Confidence 47999999999999999977652 2 45899999999998 999999999999888999999986421100 01357
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCc-CCCeEEEEEeCCCCCcc
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALV-GKDSFIVVEYPLRTDML 276 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lL-kpgG~ivv~~~~~~~l~ 276 (317)
+|.||+|.|--+.-++.+.+ .| ++||++.+..+.-+++.
T Consensus 114 ~DavfLDlp~Pw~~i~~~~~------~L~~~gG~i~~fsP~ieQv~ 153 (247)
T PF08704_consen 114 FDAVFLDLPDPWEAIPHAKR------ALKKPGGRICCFSPCIEQVQ 153 (247)
T ss_dssp EEEEEEESSSGGGGHHHHHH------HE-EEEEEEEEEESSHHHHH
T ss_pred ccEEEEeCCCHHHHHHHHHH------HHhcCCceEEEECCCHHHHH
Confidence 99999998854333333332 47 89999999888666543
No 153
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.94 E-value=8.5e-09 Score=104.04 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+|||.|.-+..+++. +...|+++|+++..+ +.+++|+++.|+.+ +.+.+.|...+...+ ...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~------~~~ 183 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN-VALTHFDGRVFGAAL------PET 183 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCchhhhhhhc------hhh
Confidence 46889999999999999887653 235799999999998 99999999999965 888999987654332 257
Q ss_pred ccEEEECCCCC
Q 021116 232 FDYMSVTPPYT 242 (317)
Q Consensus 232 fDlV~~dPPy~ 242 (317)
||.|++|+|..
T Consensus 184 fD~ILvDaPCS 194 (470)
T PRK11933 184 FDAILLDAPCS 194 (470)
T ss_pred cCeEEEcCCCC
Confidence 99999999986
No 154
>PRK06922 hypothetical protein; Provisional
Probab=98.94 E-value=5.7e-09 Score=108.08 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=78.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|.++..++.. ...+|+++|+++.++ +.|++++...+. +++++++|+.+....+ .+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~dLp~~f-----edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAINLSSSF-----EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHhCcccc-----CCCCEE
Confidence 5789999999999998776653 335899999999999 999998776553 4788999987642111 246899
Q ss_pred EEEECCCCCC--------------ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTA--------------VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~--------------~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++++++. ......++.+. +.|+|||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~--RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAY--EVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHH--HHcCCCcEEEEEeC
Confidence 9999876541 01233444433 68999999999754
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.94 E-value=1.2e-08 Score=91.82 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..+++.+. +++++|.++.++ +.+++|+...+.. ++++..+|+.++... ..++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCccE
Confidence 478999999999999998877765 599999999998 9999999887763 488899998876422 1368999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++-... ..+....++.+. +.|++||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~--~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACA--QLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHH--HhcCCCcEEEEEec
Confidence 99864332 235566666665 48999999887654
No 156
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.93 E-value=2e-08 Score=95.72 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||||..+..+++.. ..+++++|+|++++ +.+++++....-.-++..+++|+.+.+...... .....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence 46799999999999999877664 35799999999999 999998765322224777899987654322100 00123
Q ss_pred cEEEECCCCCCccHHH---HHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 233 DYMSVTPPYTAVDYEV---LMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~---~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.+++++-+.+.-..++ .++.+. +.|+|||.+++..+....
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~--~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIR--QLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHH--HhcCCCCEEEEeccCCCC
Confidence 4555665543223333 344443 589999999987654433
No 157
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.91 E-value=3.6e-09 Score=93.80 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=77.1
Q ss_pred CeEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCCCCcc
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKDGPFD 233 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~~~fD 233 (317)
.+|||||||.|.+-..+++.|.. ..++||.++.++ ++|+.-+++.+++|.|++.+.|+.+- ....-.+....+.+|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 49999999999999999998864 499999999999 99887788899998899999998763 111001122334555
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE-EeCCC
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV-EYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv-~~~~~ 272 (317)
.|-+.|--..+.....++.+. ++|+|||++++ +|+-.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~--~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVE--KLLSPGGIFVITSCNFT 185 (227)
T ss_pred eeecCCCCcccceeeehhhHh--hccCCCcEEEEEecCcc
Confidence 555554211111112223332 47899999765 46543
No 158
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=8.3e-09 Score=103.71 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=75.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||+|.++..++..+ .+|+++|+++.++ +.+++ .++..++++++++|+.+.. ++...++||+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~-----~~~~~~~fD~ 106 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPD-----LNISDGSVDL 106 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHH-HHHHH---HhccCCceEEEEecccccc-----cCCCCCCEEE
Confidence 46799999999999999887765 5799999999998 76543 3333356899999985421 1123468999
Q ss_pred EEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+++.++..-. ...+++.+. ++|+|||++++...
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~--r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMV--KWLKVGGYIFFRES 143 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHH--HhcCCCeEEEEEec
Confidence 99987754321 344555554 68999999988643
No 159
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.90 E-value=1.6e-08 Score=90.12 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+|||+|||+|.++..++..+. .+++++|+++.++ +.+++|.. ..++++++.+|+.+.. ...+.|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~~~-------~~~~~~ 107 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEALP-------FEDNSF 107 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhcCC-------CCCCcE
Confidence 578999999999999988777654 3799999999998 99998875 2346889999987643 124679
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|++.--.. ..+...+++.+. ++|+|||++++...
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMY--RVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHH--HHcCCCcEEEEEEe
Confidence 9998753221 224555666654 58999999987543
No 160
>PLN02823 spermine synthase
Probab=98.90 E-value=8.6e-08 Score=93.01 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||.+|+|.|..+.++++. +..+|++||+|++.+ +.|++++..++ + +++++++.+|+.+++... .+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKR------DE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhC------CC
Confidence 4679999999999999998884 567899999999999 99999876542 2 367999999999998543 46
Q ss_pred CccEEEECCCC--CCc----cH-HHHHH-HHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPY--TAV----DY-EVLMA-QISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy--~~~----~~-~~~l~-~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|.+- ..+ .+ .+.++ .+. +.|+|||++++...
T Consensus 176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~--~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVK--PKLNPGGIFVTQAG 221 (336)
T ss_pred CccEEEecCCCccccCcchhhccHHHHHHHHH--HhcCCCcEEEEecc
Confidence 89999999532 111 12 34444 443 58999999988754
No 161
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.89 E-value=9.4e-09 Score=93.57 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--------------CCceEEEEecHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETFLE 220 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------~~~v~ii~gD~~~~l~ 220 (317)
++.+|||+|||.|.-++.++.+|. +|++||+++.++ +.+... +++ ..+++++++|+.++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai-~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAV-EQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHH-HHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 467999999999999999999998 599999999999 765331 111 1358899999877532
Q ss_pred HHhhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 221 RAEQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 221 ~~~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.. .+.||.|+-.--+.. ...+..++.+. ++|+|||++++.+
T Consensus 109 ~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~--~lLkpgG~~ll~~ 152 (213)
T TIGR03840 109 AD------LGPVDAVYDRAALIALPEEMRQRYAAHLL--ALLPPGARQLLIT 152 (213)
T ss_pred cc------CCCcCEEEechhhccCCHHHHHHHHHHHH--HHcCCCCeEEEEE
Confidence 11 256888875322211 12344555555 4899999755543
No 162
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.88 E-value=2.2e-08 Score=84.52 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+|||+|||+|.++..+...|. +++++|+++.++ +. .+......+...... ..+.||
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~-~~-----------~~~~~~~~~~~~~~~-------~~~~fD 80 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMI-EK-----------RNVVFDNFDAQDPPF-------PDGSFD 80 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHH-HH-----------TTSEEEEEECHTHHC-------HSSSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHH-hh-----------hhhhhhhhhhhhhhc-------cccchh
Confidence 4688999999999999988888887 899999999998 55 112223332222211 247899
Q ss_pred EEEECCCC-CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPY-TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy-~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+|++.--. +..+....++.+.+ +|+|||++++.....
T Consensus 81 ~i~~~~~l~~~~d~~~~l~~l~~--~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 81 LIICNDVLEHLPDPEEFLKELSR--LLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEESSGGGSSHHHHHHHHHHH--CEEEEEEEEEEEEBT
T ss_pred hHhhHHHHhhcccHHHHHHHHHH--hcCCCCEEEEEEcCC
Confidence 99986322 23356777777764 899999999988764
No 163
>PRK05785 hypothetical protein; Provisional
Probab=98.85 E-value=4.6e-08 Score=89.59 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|||+|||||.++..++.....+|+++|+++.|+ +.|+++. ..+++|+.+. +..+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~~~l-------p~~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSFEAL-------PFRDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEechhhC-------CCCCCCEEE
Confidence 3679999999999999988776334799999999999 8887531 2467887653 334688999
Q ss_pred EEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++.-..+ ..+.+..++.+. ++|+|. ..+++..
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~--RvLkp~-~~ile~~ 147 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFT--RVSRKQ-VGFIAMG 147 (226)
T ss_pred EEecChhhccCCHHHHHHHHH--HHhcCc-eEEEEeC
Confidence 99864322 235566666665 588984 3344443
No 164
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.85 E-value=2.2e-08 Score=102.14 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHhHH
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG---------CSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G---------a~~V~aVDin~~al~~~ar~N~~ 200 (317)
..|...+++.+.+++....+........+|||+|||+|.+.+.++.+. ...++++|+|+.++ ..++.|+.
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~ 84 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLG 84 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHh
Confidence 456677888888877442100000135699999999999999876432 14689999999999 99999998
Q ss_pred HhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 201 WTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 201 ~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
.++. ..+.+.+.|......... ....+.||+|+.||||..
T Consensus 85 ~~~~-~~~~i~~~d~l~~~~~~~--~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 85 EFAL-LEINVINFNSLSYVLLNI--ESYLDLFDIVITNPPYGR 124 (524)
T ss_pred hcCC-CCceeeeccccccccccc--ccccCcccEEEeCCCccc
Confidence 8762 124566666432210000 011257999999999974
No 165
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=6.6e-08 Score=88.43 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
...+++||+|..||.-++..+.. -.++|+++|+|+.+. +.+.+=.+..|+.++++++++++.+.+.++.+ .+..++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLA-DGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHh-cCCCCc
Confidence 35789999999999877753321 134799999999998 99999999999999999999999988877632 335678
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
||++|+|. .+.+|....+.+. +++++||+|++..
T Consensus 150 fDfaFvDa--dK~nY~~y~e~~l--~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVDA--DKDNYSNYYERLL--RLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEcc--chHHHHHHHHHHH--hhcccccEEEEec
Confidence 99999995 4455655555554 4899999999876
No 166
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.82 E-value=1.6e-08 Score=92.33 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=68.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--------------CCceEEEEecHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETFLE 220 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------~~~v~ii~gD~~~~l~ 220 (317)
++.+|||+|||.|.-++.++.+|. +|+|||+++.++ +.+.. .+++ ..+++++++|+.++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai-~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAV-EQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHH-HHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 467999999999999999999998 599999999999 76532 2222 2468899999987632
Q ss_pred HHhhhcCCCCCccEEEECCCCC---CccHHHHHHHHHHcCCcCCCeEEE
Q 021116 221 RAEQFVGKDGPFDYMSVTPPYT---AVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 221 ~~~~~~~~~~~fDlV~~dPPy~---~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
. ..+.||.|+--.-+. .......++.+. ++|+|||+++
T Consensus 112 ~------~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~--~lL~pgG~~~ 152 (218)
T PRK13255 112 A------DLADVDAVYDRAALIALPEEMRERYVQQLA--ALLPAGCRGL 152 (218)
T ss_pred c------cCCCeeEEEehHhHhhCCHHHHHHHHHHHH--HHcCCCCeEE
Confidence 1 125788888322111 112345566665 4899998633
No 167
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.81 E-value=4.7e-08 Score=90.69 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...+.+.+.+.+.. .++.+|||+|||+|.++..++.++. +|+++|+|+.++ +.+++++.. .+++++++
T Consensus 14 d~~i~~~i~~~~~~-------~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~-~~l~~~~~~---~~~v~v~~ 81 (253)
T TIGR00755 14 DESVIQKIVEAANV-------LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA-EILRKLLSL---YERLEVIE 81 (253)
T ss_pred CHHHHHHHHHhcCC-------CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH-HHHHHHhCc---CCcEEEEE
Confidence 34456666666543 3578999999999999999888875 699999999998 999888743 34689999
Q ss_pred ecHHHHHHHHhhhcCCCCCcc---EEEECCCCCCccHHHHHHHH
Q 021116 213 VRVETFLERAEQFVGKDGPFD---YMSVTPPYTAVDYEVLMAQI 253 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fD---lV~~dPPy~~~~~~~~l~~L 253 (317)
+|+.++.. ..|| +|+.|+||+. ..+++..+
T Consensus 82 ~D~~~~~~---------~~~d~~~~vvsNlPy~i--~~~il~~l 114 (253)
T TIGR00755 82 GDALKVDL---------PDFPKQLKVVSNLPYNI--SSPLIFKL 114 (253)
T ss_pred CchhcCCh---------hHcCCcceEEEcCChhh--HHHHHHHH
Confidence 99876531 2355 9999999974 23444444
No 168
>PTZ00146 fibrillarin; Provisional
Probab=98.81 E-value=6.8e-08 Score=91.84 Aligned_cols=127 Identities=9% Similarity=-0.067 Sum_probs=81.7
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..|-.+.++.++++-+.... ..++.+|||+|||+|.++..++.. | ..+|++||+++++. +.+.+-++.. .
T Consensus 110 w~p~rSKlaa~i~~g~~~l~----IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r---~ 181 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIP----IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR---P 181 (293)
T ss_pred eCCcccHHHHHHHCCcceec----cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc---C
Confidence 45777778877766554321 136789999999999999988765 2 34799999999875 4443332221 3
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.++.+|+....... ...+.||+||+|-.. ..+...++..+ .++|+|+|.+++...
T Consensus 182 NI~~I~~Da~~p~~y~----~~~~~vDvV~~Dva~-pdq~~il~~na--~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYR----MLVPMVDVIFADVAQ-PDQARIVALNA--QYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhh----cccCCCCEEEEeCCC-cchHHHHHHHH--HHhccCCCEEEEEEe
Confidence 4778889976421110 012579999999742 11222222222 358999999998543
No 169
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.81 E-value=7.7e-10 Score=87.35 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=57.8
Q ss_pred EEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 160 LDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
||+|||+|.++..++.. ...+++++|+|+.++ +.+++++...+..+ ...++.+..+..... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence 79999999999887765 345799999999999 99999988877543 444554444333211 12489999986
Q ss_pred CCCC-CccHHHHHHHHHHcCCcCCCeEE
Q 021116 239 PPYT-AVDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 239 PPy~-~~~~~~~l~~L~~~~lLkpgG~i 265 (317)
--.+ ..+....++.+. ++|+|||++
T Consensus 74 ~vl~~l~~~~~~l~~~~--~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIY--RLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHT--TT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHH--HHcCCCCCC
Confidence 4332 235566666654 699999986
No 170
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.80 E-value=8.1e-08 Score=86.78 Aligned_cols=71 Identities=17% Similarity=0.063 Sum_probs=56.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.+|||+|||+|..+..++.. +..++++||+|+.++ +.|++|.. +++++++|+.+.. .+++||
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~------~~~~~~~d~~~~~--------~~~sfD 107 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP------NINIIQGSLFDPF--------KDNFFD 107 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC------CCcEEEeeccCCC--------CCCCEE
Confidence 5678999999999999887765 445799999999999 99988742 2567888876521 257899
Q ss_pred EEEECCC
Q 021116 234 YMSVTPP 240 (317)
Q Consensus 234 lV~~dPP 240 (317)
+|+++--
T Consensus 108 ~V~~~~v 114 (204)
T TIGR03587 108 LVLTKGV 114 (204)
T ss_pred EEEECCh
Confidence 9998754
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.79 E-value=4.5e-08 Score=91.72 Aligned_cols=97 Identities=9% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG----CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G----a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
...+|||+|||+|.++..++... ...|+++|+++.++ +.|+++. .+++++.+|+.+. +..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~------~~~~~~~~d~~~l-------p~~~~ 150 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY------PQVTFCVASSHRL-------PFADQ 150 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC------CCCeEEEeecccC-------CCcCC
Confidence 45789999999999988766432 23699999999999 8887653 2367888887653 22357
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+||+|+.. +.... ++.+. ++|+|||++++..+...
T Consensus 151 sfD~I~~~--~~~~~----~~e~~--rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 151 SLDAIIRI--YAPCK----AEELA--RVVKPGGIVITVTPGPR 185 (272)
T ss_pred ceeEEEEe--cCCCC----HHHHH--hhccCCCEEEEEeCCCc
Confidence 89999963 22112 23333 57999999998866443
No 172
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.78 E-value=2.6e-08 Score=93.40 Aligned_cols=107 Identities=8% Similarity=0.017 Sum_probs=72.1
Q ss_pred CCCeEEEECCCcch----HHHHHHHcC------CCEEEEEeCCHHHHHHHHHHhHHH----hC-----------------
Q 021116 155 RPGRWLDLYSGTGS----VGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEW----TG----------------- 203 (317)
Q Consensus 155 ~~~rVLDlgcGtG~----l~Ieaas~G------a~~V~aVDin~~al~~~ar~N~~~----~g----------------- 203 (317)
.+.+|||+|||||- +++.++..+ ..+|+|+|+|+.++ +.|++++-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 35799999999994 566554432 23799999999999 999986410 01
Q ss_pred -----CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 204 -----FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 204 -----l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+.+++++.++|+.+.. ...++||+|++.--.... ....+++.+. +.|+|||++++.+..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~-------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~--~~L~pGG~L~lg~~E 244 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES-------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFA--EALKPGGYLFLGHSE 244 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC-------CccCCCCEEEechhHHhCCHHHHHHHHHHHH--HHhCCCeEEEEECcc
Confidence 2235788888876532 124689999984221111 2334566654 589999999997753
No 173
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.78 E-value=6.5e-08 Score=85.58 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~~ 229 (317)
.++.+|||+|||+|.++..++.+ +..+|+++|+++.+ .. .+++++++|+.+.. ..... ....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~-~~i~~~~~d~~~~~~~~~l~~-~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PI-ENVDFIRGDFTDEEVLNKIRE-RVGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cC-CCceEEEeeCCChhHHHHHHH-HhCC
Confidence 46889999999999999877654 34579999999843 11 23677888875421 11000 0124
Q ss_pred CCccEEEECCC--CC-Cc--c-------HHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPP--YT-AV--D-------YEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPP--y~-~~--~-------~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+.||+|++|++ +. .. . .+..++.+. +.|+|||+++++......+
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~lvi~~~~~~~~ 152 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAK--EVLKPKGNFVVKVFQGEEI 152 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHH--HHccCCCEEEEEEccCccH
Confidence 57999999852 21 11 1 133444433 5899999999976544443
No 174
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=1.5e-08 Score=90.61 Aligned_cols=109 Identities=24% Similarity=0.336 Sum_probs=83.3
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
..++++|||+|+|+|..+|.++..|++.|++.|++|... +.++.|++.||+. +.+...|... .+..|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~--i~~~~~d~~g----------~~~~~ 143 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVS--ILFTHADLIG----------SPPAF 143 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccce--eEEeeccccC----------CCcce
Confidence 367999999999999999999999999999999999998 9999999999985 7888887543 25789
Q ss_pred cEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 233 DYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 233 DlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
|++++ |--|.......++..+.. +...|-.+++-.+.+..++
T Consensus 144 Dl~LagDlfy~~~~a~~l~~~~~~--l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 144 DLLLAGDLFYNHTEADRLIPWKDR--LAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eEEEeeceecCchHHHHHHHHHHH--HHhCCCEEEEeCCCCCCCc
Confidence 99997 665665555666664431 2344444555555555554
No 175
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.73 E-value=3.5e-08 Score=88.65 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.-.++||+|||.|.++..++.+ +.+++++|+++.++ +.|++.++. . .+|++++.|+.++.. .++||+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~~~P--------~~~FDL 109 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPEFWP--------EGRFDL 109 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----------SS-EEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCCCCC--------CCCeeE
Confidence 4578999999999999988777 57899999999999 999988764 3 359999999988752 478999
Q ss_pred EEECCC-CCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPP-YTAVD---YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPP-y~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++.-- |.... +...++.+.+ .|+|||.+++.+...
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~--~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVA--ALAPGGHLVFGHARD 149 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHH--TEEEEEEEEEEEE-H
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHH--HhCCCCEEEEEEecC
Confidence 998532 33222 3344555543 799999999987643
No 176
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.6e-07 Score=91.75 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~G---a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+|||+|++.|+=+..++... ...|+++|+++..+ +.+++|++++|+.+ +.+++.|...+..... ...
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~----~~~ 228 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLP----GGE 228 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEeccccccccccc----ccC
Confidence 478999999999999887765532 23479999999999 99999999999987 7788888765433221 123
Q ss_pred CccEEEECCCCCC-cc---------------H----HHHHHHHH-HcCCcCCCeEEEEEe
Q 021116 231 PFDYMSVTPPYTA-VD---------------Y----EVLMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 231 ~fDlV~~dPPy~~-~~---------------~----~~~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
+||.|++|+|... +. . .-+.+.|. +.++|+|||.++.++
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 5999999999863 21 0 11122222 246899999986543
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.69 E-value=1.3e-07 Score=84.72 Aligned_cols=97 Identities=21% Similarity=0.256 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.++.+|||||||.|.+--.+.. +++ +.++||+|++.+ ..+.+ .| +.++++|+.+.+..+ .+++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v-~~cv~----rG----v~Viq~Dld~gL~~f-----~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNV-AACVA----RG----VSVIQGDLDEGLADF-----PDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHH-HHHHH----cC----CCEEECCHHHhHhhC-----CCCCc
Confidence 3589999999999999866555 444 699999999987 44432 34 458999999988765 47899
Q ss_pred cEEEECCCCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|.||+.=--. ....+.+++.+ |+=|...+++.+
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~Em-----lRVgr~~IVsFP 110 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEM-----LRVGRRAIVSFP 110 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHH-----HHhcCeEEEEec
Confidence 9999962100 01123444443 344556666655
No 178
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.68 E-value=5.3e-08 Score=88.52 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|.|||||+|..+-.++.| ....++++|.|++|+ +.|++.+ .+++|.++|+.+|- ....+|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~rl------p~~~f~~aDl~~w~--------p~~~~d 94 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQRL------PDATFEEADLRTWK--------PEQPTD 94 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHhC------CCCceecccHhhcC--------CCCccc
Confidence 4679999999999998666655 556899999999999 7775432 23789999999984 246799
Q ss_pred EEEECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++|.|.-+.+ .++.+++..+.. .|.|||++-+..+..
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~--~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVS--QLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHH--hhCCCceEEEECCCc
Confidence 9999987654 466777777764 799999999987644
No 179
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.67 E-value=3.8e-08 Score=94.49 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSN-------VLIPNLEWTGFLDV-SSIHTVRVETFLERAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~-------~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~ 225 (317)
.+|+.|+|+|.|||++-+.++..|+ .|+|-|||-.++ . -.+.|++..|..++ +.++.+|..+..-.
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~v-ragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---- 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTV-RAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---- 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchhee-ecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence 5799999999999999999998887 799999999887 5 35778888886543 45677776543211
Q ss_pred cCCCCCccEEEECCCCCCcc------------------------------HHHHHHHHH--HcCCcCCCeEEEEEeCCC
Q 021116 226 VGKDGPFDYMSVTPPYTAVD------------------------------YEVLMAQIS--KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~~~------------------------------~~~~l~~L~--~~~lLkpgG~ivv~~~~~ 272 (317)
....||.|++||||+-.. +..++..+. .++.|..||++++-.+..
T Consensus 281 --sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 281 --SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred --hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 135799999999997320 112222222 457899999999877644
No 180
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.67 E-value=1.9e-07 Score=83.01 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++.+|||+|||+|.++..++......++++|+++.++ +.++++ +++++++|+.+.+... .+++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVAR--------GVNVIQGDLDEGLEAF-----PDKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHHc--------CCeEEEEEhhhccccc-----CCCCcCE
Confidence 4679999999999999877655444689999999998 777542 2568889987633211 2468999
Q ss_pred EEECCCCCC-ccHHHHHHHHH
Q 021116 235 MSVTPPYTA-VDYEVLMAQIS 254 (317)
Q Consensus 235 V~~dPPy~~-~~~~~~l~~L~ 254 (317)
|+++.+++. .+....++.+.
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~~ 99 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEML 99 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHHH
Confidence 999876532 34455555543
No 181
>PRK04148 hypothetical protein; Provisional
Probab=98.63 E-value=9.7e-07 Score=74.96 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCeEEEECCCcch-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGS-VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~-l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
++.++||+|||+|. ++..+.+.|. +|+++|+|+.++ +.++++ + ++++.+|+++.-... -..+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV-~~a~~~----~----~~~v~dDlf~p~~~~------y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV-EKAKKL----G----LNAFVDDLFNPNLEI------YKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHh----C----CeEEECcCCCCCHHH------HhcCC
Confidence 46789999999995 8887777786 699999999998 888765 2 467888987653322 25799
Q ss_pred EEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEee
Q 021116 234 YMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGP 300 (317)
Q Consensus 234 lV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p 300 (317)
+|. +.||.. +...+..++. +-|.-+++..-..+... ..+ +-..|....+.+|+|
T Consensus 80 liysirpp~e---l~~~~~~la~----~~~~~~~i~~l~~e~~~---~~~---kl~ny~~~~~y~~~~ 134 (134)
T PRK04148 80 LIYSIRPPRD---LQPFILELAK----KINVPLIIKPLSGEEPI---KEL---KLINYKGKPIYVWKP 134 (134)
T ss_pred EEEEeCCCHH---HHHHHHHHHH----HcCCCEEEEcCCCCCCC---cce---EEEecCCeEEEEeCC
Confidence 999 577742 3333333332 33455555544444322 333 445677777777763
No 182
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.63 E-value=3.8e-08 Score=87.73 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=61.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
..+.+.|||+|||.+++.|+.. +.+|++||.||... ++|.+|+..+|.. +++++.+|+.+.-. ...|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~~-n~evv~gDA~~y~f---------e~ADv 99 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGDV-NWEVVVGDARDYDF---------ENADV 99 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCCc-ceEEEecccccccc---------cccce
Confidence 4578999999999999987766 78999999999998 9999999888874 59999999987631 35688
Q ss_pred EEEC
Q 021116 235 MSVT 238 (317)
Q Consensus 235 V~~d 238 (317)
|++.
T Consensus 100 vicE 103 (252)
T COG4076 100 VICE 103 (252)
T ss_pred eHHH
Confidence 8864
No 183
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.62 E-value=1.9e-07 Score=92.00 Aligned_cols=149 Identities=21% Similarity=0.352 Sum_probs=92.6
Q ss_pred CCCCCCCChHHHHHHH------HHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Q 021116 125 KGMDVRPMMEVVKGAA------FDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 125 ~~~~~rpt~~~v~~al------f~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar 196 (317)
...+++|.+..-+... ++.+.... ...-++||..||||.=|+..+.. |..+|++.|+|++++ +.++
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~-----~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~ 91 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKR-----KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIK 91 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHH
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhh-----cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHH
Confidence 4457888775433322 23332210 12458999999999999986654 678999999999998 9999
Q ss_pred HhHHHhCCCC-ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 197 PNLEWTGFLD-VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 197 ~N~~~~gl~~-~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+|++.|++++ ++++.+.|+...+.. ....||+|=+|| |+. -...++.... .++.||++.+.+. +.
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDP-fGS--p~pfldsA~~--~v~~gGll~vTaT---D~ 157 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDP-FGS--PAPFLDSALQ--AVKDGGLLCVTAT---DT 157 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE---SS----HHHHHHHHH--HEEEEEEEEEEE-----H
T ss_pred HhHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCC-CCC--ccHhHHHHHH--HhhcCCEEEEecc---cc
Confidence 9999999987 789999999987742 247899999996 654 3344544332 4789999998774 33
Q ss_pred cccCCCeEEEEEeecCce
Q 021116 276 LDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 276 ~~~~~~~~~~~~r~yG~~ 293 (317)
..+++......-++||..
T Consensus 158 a~L~G~~~~~~~r~Yg~~ 175 (377)
T PF02005_consen 158 AVLCGSYPEKCFRKYGAV 175 (377)
T ss_dssp HHHTTSSHHHHHHHHSSB
T ss_pred ccccCCChhHHHHhcCCc
Confidence 323333222223667753
No 184
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.62 E-value=1.4e-06 Score=82.65 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|||+||+.|+-+..++.. + ..+|+++|+++..+ +.+++|+++.|+.+ +.++..|......... ...
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~-----~~~ 156 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVINADARKLDPKKP-----ESK 156 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEEESHHHHHHHHHH-----TTT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEEeecccccccccc-----ccc
Confidence 46889999999999999876653 2 46899999999999 99999999999965 7788899888755442 245
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
||.|++|+|...
T Consensus 157 fd~VlvDaPCSg 168 (283)
T PF01189_consen 157 FDRVLVDAPCSG 168 (283)
T ss_dssp EEEEEEECSCCC
T ss_pred cchhhcCCCccc
Confidence 999999999863
No 185
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.61 E-value=2.5e-08 Score=91.33 Aligned_cols=118 Identities=22% Similarity=0.304 Sum_probs=84.2
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
-.++||||||||..|..+-.+ +.++++||+|..|+ +.|.+. |+-+ ++.++|+..|+... .+++||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccch
Confidence 579999999999999766555 56799999999999 777542 3323 35677888777543 35789999
Q ss_pred EE-CC-CCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCce
Q 021116 236 SV-TP-PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 236 ~~-dP-Py~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~ 293 (317)
.. |- ||. +.++.++-... .+|+|||.+.++.. ++.++ ++|.+-...+|-+.
T Consensus 193 ~AaDVl~Yl-G~Le~~~~~aa--~~L~~gGlfaFSvE---~l~~~-~~f~l~ps~RyAH~ 245 (287)
T COG4976 193 VAADVLPYL-GALEGLFAGAA--GLLAPGGLFAFSVE---TLPDD-GGFVLGPSQRYAHS 245 (287)
T ss_pred hhhhHHHhh-cchhhHHHHHH--HhcCCCceEEEEec---ccCCC-CCeecchhhhhccc
Confidence 96 42 453 46676666554 58999999998765 33333 55777666777543
No 186
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=5.4e-07 Score=80.95 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+||+|||.|.+.++.+.. .-..++|||+....+ ..+...+...++.| +.++++|+..++..+. .++++|-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~----~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGLKN-VRFLRGDARELLRRLF----PPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTTSS-EEEEES-CTTHHHHHS----TTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcccc-eEEEEccHHHHHhhcc----cCCchhe
Confidence 348999999999999987765 345799999999998 89999999999865 9999999998876652 3578999
Q ss_pred EEE---CCCCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSV---TPPYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~---dPPy~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
|++ || +.+. ...+.++.+. ++|++||.|.+.++..
T Consensus 92 i~i~FPDP-WpK~rH~krRl~~~~fl~~~~--~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 92 IYINFPDP-WPKKRHHKRRLVNPEFLELLA--RVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEES------SGGGGGGSTTSHHHHHHHH--HHEEEEEEEEEEES-H
T ss_pred EEEeCCCC-CcccchhhhhcCCchHHHHHH--HHcCCCCEEEEEeCCH
Confidence 987 54 3322 1356666665 4899999999988754
No 187
>PRK06202 hypothetical protein; Provisional
Probab=98.59 E-value=1.8e-07 Score=85.41 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCeEEEECCCcchHHHHHHH----cCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS----RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas----~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
++.+|||+|||+|.++..++. .|. .+|+++|+++.++ +.|+++....+ +++...|+.... ..+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~----~~~~~~~~~~l~-------~~~ 127 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPG----VTFRQAVSDELV-------AEG 127 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCC----CeEEEEeccccc-------ccC
Confidence 567999999999999887653 242 3799999999999 99988865443 445555543321 124
Q ss_pred CCccEEEECCCCC
Q 021116 230 GPFDYMSVTPPYT 242 (317)
Q Consensus 230 ~~fDlV~~dPPy~ 242 (317)
++||+|+++--++
T Consensus 128 ~~fD~V~~~~~lh 140 (232)
T PRK06202 128 ERFDVVTSNHFLH 140 (232)
T ss_pred CCccEEEECCeee
Confidence 6899999986543
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7.8e-07 Score=83.28 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
+...+.+.+.. .+++.||++|+|.|+++.++++++. +|++||+|+..+ +.+++... ..++++++++|+
T Consensus 18 v~~kIv~~a~~-------~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~-~~L~~~~~---~~~n~~vi~~Da 85 (259)
T COG0030 18 VIDKIVEAANI-------SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA-EVLKERFA---PYDNLTVINGDA 85 (259)
T ss_pred HHHHHHHhcCC-------CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH-HHHHHhcc---cccceEEEeCch
Confidence 44555555543 3578999999999999999999876 599999999998 88877654 335699999999
Q ss_pred HHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
..+.... -..++.|+.|.||+-
T Consensus 86 Lk~d~~~------l~~~~~vVaNlPY~I 107 (259)
T COG0030 86 LKFDFPS------LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCcchh------hcCCCEEEEcCCCcc
Confidence 8763210 016899999999974
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.48 E-value=5.7e-07 Score=82.88 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
..+.+|||+|||||.++..++..|+.+|++||.++.++...+++|.+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 46889999999999999999999998999999999777233555533
No 190
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=8e-07 Score=86.36 Aligned_cols=147 Identities=21% Similarity=0.354 Sum_probs=97.7
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 127 MDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 127 ~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
.++.|.+..-+......++.... ....+|+|..||||.=||..+.. +..+|++-|+||.++ +++++|++.|..+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~----~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~ 102 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGK----LLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGE 102 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhc----cCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCcc
Confidence 35677765544433333333210 12689999999999999987654 554899999999998 9999999999555
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEE
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKI 285 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~ 285 (317)
+ ..+++.|+..++... ...||+|=+|| |+.. ...++... +-++.||++-+.+.-...+ ++....-
T Consensus 103 ~-~~v~n~DAN~lm~~~------~~~fd~IDiDP-FGSP--aPFlDaA~--~s~~~~G~l~vTATD~a~L---~G~~p~~ 167 (380)
T COG1867 103 D-AEVINKDANALLHEL------HRAFDVIDIDP-FGSP--APFLDAAL--RSVRRGGLLCVTATDTAPL---CGSYPRK 167 (380)
T ss_pred c-ceeecchHHHHHHhc------CCCccEEecCC-CCCC--chHHHHHH--HHhhcCCEEEEEecccccc---cCCChHH
Confidence 5 567779999888653 37899999996 6543 23333322 2367799998877533332 3442222
Q ss_pred EEeecCce
Q 021116 286 KDRRFGRT 293 (317)
Q Consensus 286 ~~r~yG~~ 293 (317)
.-|+|+..
T Consensus 168 c~rkY~a~ 175 (380)
T COG1867 168 CRRKYGAV 175 (380)
T ss_pred HHHHhccc
Confidence 23667654
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.46 E-value=1.1e-05 Score=70.85 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=89.5
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 128 DVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 128 ~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
..-||++..++.|.+.... ..+.-||++|.|||.++-..+++|. ..++++|.|++-+ ..+.+- .
T Consensus 28 aI~PsSs~lA~~M~s~I~p-------esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~---~--- 93 (194)
T COG3963 28 AILPSSSILARKMASVIDP-------ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQL---Y--- 93 (194)
T ss_pred eecCCcHHHHHHHHhccCc-------ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHh---C---
Confidence 3578999999999887765 3577899999999999999999885 4699999999987 554332 2
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHH---HHHHHHHHcCCcCCCeEEE-EEeC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYE---VLMAQISKSALVGKDSFIV-VEYP 270 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~---~~l~~L~~~~lLkpgG~iv-v~~~ 270 (317)
+.+++++||+.+....+.. ..+..||.||+.-|...-... ++++.+. ..|..||-++ +.+.
T Consensus 94 p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~P~~~~iaile~~~--~rl~~gg~lvqftYg 158 (194)
T COG3963 94 PGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNFPMHRRIAILESLL--YRLPAGGPLVQFTYG 158 (194)
T ss_pred CCccccccchhhHHHHHhh--cCCCeeeeEEeccccccCcHHHHHHHHHHHH--HhcCCCCeEEEEEec
Confidence 2256899999886533321 235679999999887543332 3444443 2577788776 4454
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.42 E-value=1.7e-06 Score=82.58 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++..++|.+||.|..+..+++.. ..+|+|+|.|++++ +.|++++.. .++++++++|..++...+. ..-.++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L~~---~~ri~~i~~~f~~l~~~l~---~~~~~v 91 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRLKP---FGRFTLVHGNFSNLKEVLA---EGLGKV 91 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhhcc---CCcEEEEeCCHHHHHHHHH---cCCCcc
Confidence 57799999999999999988764 35899999999999 999988764 3679999999998865543 111279
Q ss_pred cEEEECC
Q 021116 233 DYMSVTP 239 (317)
Q Consensus 233 DlV~~dP 239 (317)
|.|++|.
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999986
No 193
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.42 E-value=1.6e-06 Score=80.67 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCC---CCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGF---LDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl---~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
+.++||=+|-|.|...-++++.. ..+|+.||+|+..+ +.|++-+..... +++++++.+|+..++... ..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence 57899999999999999887754 57899999999999 999987665432 367999999999999764 34
Q ss_pred -CccEEEECCCCCCc----c-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 -PFDYMSVTPPYTAV----D-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 -~fDlV~~dPPy~~~----~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|++|.+-..+ . -.+.++.+. +.|+++|++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~--~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCK--RRLKPDGVLVLQAG 192 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHH--HHEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHH--hhcCCCcEEEEEcc
Confidence 89999998753211 1 245566655 37999999998763
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.42 E-value=9.1e-07 Score=82.91 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.+.||++|-|||.++..++..|+ +|+|+|+|+.++ ....+-.+-...+++.+++.||+... ....||
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmv-ael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd 125 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMV-AELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFD 125 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHH-HHHHHHhcCCCccceeeEEecccccC---------CCcccc
Confidence 4688999999999999999988876 699999999998 77776666555558899999997653 236899
Q ss_pred EEEECCCCCC
Q 021116 234 YMSVTPPYTA 243 (317)
Q Consensus 234 lV~~dPPy~~ 243 (317)
.++.|-||..
T Consensus 126 ~cVsNlPyqI 135 (315)
T KOG0820|consen 126 GCVSNLPYQI 135 (315)
T ss_pred eeeccCCccc
Confidence 9999999964
No 195
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.42 E-value=3.6e-06 Score=76.58 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHH--HHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCC---------------------------
Q 021116 155 RPGRWLDLYSGTGSVGIE--AISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------------------- 204 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie--aas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------------------- 204 (317)
..-+++|.|||+|.+--. ++.+ ....|++-|+|+.++ ++|++|+..+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 457899999999987533 2332 245799999999999 999999875422
Q ss_pred --------------CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc----------cHHHHHHHHHHcCCcC
Q 021116 205 --------------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV----------DYEVLMAQISKSALVG 260 (317)
Q Consensus 205 --------------~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~----------~~~~~l~~L~~~~lLk 260 (317)
.-...+.+.|++++..... . ......|+|+.|-||+.- .....++.|. +.|-
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~-~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~--~vLp 205 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAV-L-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLA--PVLP 205 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHH-H-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHH--CCS-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhh-h-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHH--hhCC
Confidence 1124577788877543211 1 113446999999999741 1344555554 5887
Q ss_pred CCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEe
Q 021116 261 KDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 261 pgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
.+++|.+ +...+.+. .+.|.-++.-+-|+-.+.||+
T Consensus 206 ~~sVV~v-~~k~~Ki~--~~~~r~~~rlKvGkR~~~l~r 241 (246)
T PF11599_consen 206 ERSVVAV-SDKGRKIP--HDRFRRLERLKVGKRQAALFR 241 (246)
T ss_dssp TT-EEEE-EESSSS-----TTS--SEEEEETTEEEEEEE
T ss_pred CCcEEEE-ecCCcccc--cchhHHHHHHhccceEEEEEe
Confidence 7777777 66566665 366777788888999999885
No 196
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.9e-06 Score=79.60 Aligned_cols=118 Identities=18% Similarity=0.077 Sum_probs=87.8
Q ss_pred eeeecceEEecCCCC---CCCCChHHHHHH---------------HHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH
Q 021116 113 GGKARRKKLLSPKGM---DVRPMMEVVKGA---------------AFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI 174 (317)
Q Consensus 113 ~G~~~G~~l~~p~~~---~~rpt~~~v~~a---------------lf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa 174 (317)
-|+..|.++.+..|. ..+||.+....+ +..+|.. .+|.+|++-|+|+|+++..++
T Consensus 52 IGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i-------~PGsvV~EsGTGSGSlShaia 124 (314)
T KOG2915|consen 52 IGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEI-------RPGSVVLESGTGSGSLSHAIA 124 (314)
T ss_pred ecCCccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcC-------CCCCEEEecCCCcchHHHHHH
Confidence 367778888887773 358887653322 2333433 579999999999999998655
Q ss_pred Hc-C-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 175 SR-G-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 175 s~-G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+. + -.|++..|.+.... +.|++-.+..|+.+++++...|+...-. ..+...+|.||+|.|--+
T Consensus 125 raV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF-----~~ks~~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 125 RAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGF-----LIKSLKADAVFLDLPAPW 189 (314)
T ss_pred HhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCc-----cccccccceEEEcCCChh
Confidence 43 2 35899999999997 9999999999999999999999865321 112467999999988543
No 197
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=77.17 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE-EE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS-IH 211 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~-ii 211 (317)
+.-++.+|+-+....+ ......||++|||||..--.. .+.+. +|+++|.|+.+- +.|.+.++.+.-. +++ ++
T Consensus 58 ~~ykrelFs~i~~~~g---k~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~me-e~~~ks~~E~k~~-~~~~fv 131 (252)
T KOG4300|consen 58 DSYKRELFSGIYYFLG---KSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKME-EIADKSAAEKKPL-QVERFV 131 (252)
T ss_pred HHHHHHHHhhhHHHhc---ccCccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHH-HHHHHHHhhccCc-ceEEEE
Confidence 3446667765432211 022345899999999764322 23555 699999999997 9999988877543 455 88
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+|.++... + .++++|.|+.-- ..+ +..++++.+. ++|+|||++++-..
T Consensus 132 va~ge~l~~-l-----~d~s~DtVV~Tl--vLCSve~~~k~L~e~~--rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 132 VADGENLPQ-L-----ADGSYDTVVCTL--VLCSVEDPVKQLNEVR--RLLRPGGRIIFIEH 183 (252)
T ss_pred eechhcCcc-c-----ccCCeeeEEEEE--EEeccCCHHHHHHHHH--HhcCCCcEEEEEec
Confidence 899887642 2 368999999752 223 3445555554 69999999875443
No 198
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.31 E-value=1e-05 Score=74.58 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=85.3
Q ss_pred CeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
..+||+|||.|.+.++.|.... ...+|||+....+ ..|..-+...++. ++.++++|+..++..+. .+++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence 5899999999999999877653 4699999999998 8888888888986 59999999999998763 34488888
Q ss_pred EECC--CCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 236 SVTP--PYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 236 ~~dP--Py~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++= |+.+. .....++.+. +.|++||.|.+.++..
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a--~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYA--RKLKPGGVLHFATDNE 167 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHH--HHccCCCEEEEEecCH
Confidence 8742 24432 2456666665 4899999999988754
No 199
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=5.3e-06 Score=76.75 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
..+.-+||+||-+|.+++..++ .|+..|.+||||+..+ +.|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhcccc
Confidence 4578899999999999998776 5888999999999998 9999999864
No 200
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.28 E-value=5.2e-06 Score=77.61 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 133 MEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 133 ~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
...+.+.+.+.+.. .++..|||+|+|+|.++-+++..+ .+|++||+|+..+ +.+++... ..++++++.
T Consensus 15 ~~~~~~~Iv~~~~~-------~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~---~~~~~~vi~ 82 (262)
T PF00398_consen 15 DPNIADKIVDALDL-------SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFA---SNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHHTC-------GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCT---TCSSEEEEE
T ss_pred CHHHHHHHHHhcCC-------CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhh---hcccceeee
Confidence 35577777777754 368899999999999999998887 7899999999998 88887655 235699999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHH
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQIS 254 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~ 254 (317)
+|+.++..... .......|+.|.||.. ...++..+.
T Consensus 83 ~D~l~~~~~~~----~~~~~~~vv~NlPy~i--s~~il~~ll 118 (262)
T PF00398_consen 83 GDFLKWDLYDL----LKNQPLLVVGNLPYNI--SSPILRKLL 118 (262)
T ss_dssp S-TTTSCGGGH----CSSSEEEEEEEETGTG--HHHHHHHHH
T ss_pred cchhccccHHh----hcCCceEEEEEecccc--hHHHHHHHh
Confidence 99987632110 0134569999999953 344555544
No 201
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=1.1e-05 Score=73.25 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=60.3
Q ss_pred CCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHH-------hCCC-CceEEEEecHHHH--HHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGFL-DVSSIHTVRVETF--LERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~-------~gl~-~~v~ii~gD~~~~--l~~~ 222 (317)
.+++.++|||||.|.+-+.++ ..++.+++|||+.+... +.|+.+.+. +|.. .++++.++|+.+. ....
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 357899999999999988654 56888899999999987 888765543 3432 4578889997543 2211
Q ss_pred hhhcCCCCCccEEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEE
Q 021116 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVE 268 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~ 268 (317)
- ..-|+||+|- ...-+++...|.+ ..-|++|.+|+..
T Consensus 120 ~------s~AdvVf~Nn---~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 W------SDADVVFVNN---TCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp G------HC-SEEEE-----TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred h------cCCCEEEEec---cccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 0 3479999983 2222333333321 2468999888754
No 202
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.25 E-value=4e-06 Score=76.68 Aligned_cols=102 Identities=18% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHhHHHhCC----------CCceEEEEecHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVL-IPNLEWTGF----------LDVSSIHTVRVETFLERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~a-r~N~~~~gl----------~~~v~ii~gD~~~~l~~~ 222 (317)
..+.+||++|||.|.-.+.++.+|. +|+|+|+++.|+ +.+ ++|...... .++++++++|++++-..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai-~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~- 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI-EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE- 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH-HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS-
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH-HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh-
Confidence 3567999999999999999999987 699999999999 887 333321110 23589999999875321
Q ss_pred hhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEE
Q 021116 223 EQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~i 265 (317)
..++||+|+=---+.. ..-.+..+.+. ++|+|||.+
T Consensus 113 -----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~--~ll~p~g~~ 151 (218)
T PF05724_consen 113 -----DVGKFDLIYDRTFLCALPPEMRERYAQQLA--SLLKPGGRG 151 (218)
T ss_dssp -----CHHSEEEEEECSSTTTS-GGGHHHHHHHHH--HCEEEEEEE
T ss_pred -----hcCCceEEEEecccccCCHHHHHHHHHHHH--HHhCCCCcE
Confidence 1257999984321211 12234444444 389999993
No 203
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.22 E-value=1e-05 Score=74.47 Aligned_cols=107 Identities=15% Similarity=0.038 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-h-H----------HHhCCCCceEEEEecHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP-N-L----------EWTGFLDVSSIHTVRVETFLERA 222 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~-N-~----------~~~gl~~~v~ii~gD~~~~l~~~ 222 (317)
++.+||++|||.|.-.+.+++.|.. |++||+++.++ +.+.+ | + .... ...++++++|++++-...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai-~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAV-LSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHH-HHHHHHcCCCcceecccccceec-cCceEEEEccCcCCCccc
Confidence 4689999999999999999999985 99999999999 77644 2 0 0011 135899999998762100
Q ss_pred hhhcCCCCCccEEEECCCCCC---ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 223 EQFVGKDGPFDYMSVTPPYTA---VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~---~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...+.||+|+--.-+.. ..-.+..+.+. ++|+|||.+++.+-
T Consensus 120 ----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~--~lL~pgg~llll~~ 164 (226)
T PRK13256 120 ----NNLPVFDIWYDRGAYIALPNDLRTNYAKMML--EVCSNNTQILLLVM 164 (226)
T ss_pred ----cccCCcCeeeeehhHhcCCHHHHHHHHHHHH--HHhCCCcEEEEEEE
Confidence 01257898764322111 11233344443 37899998775543
No 204
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.20 E-value=3.3e-06 Score=80.62 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=56.9
Q ss_pred ecCCCCCCCCChH---HHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchH-HHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 021116 122 LSPKGMDVRPMME---VVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSV-GIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 122 ~~p~~~~~rpt~~---~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l-~Ieaas-~Ga~~V~aVDin~~al~~~ar 196 (317)
..|.+.- .|+.. .....+.+.|..... ......++||+|||.-.+ .+-.++ .|. +.+|.|+|+.++ +.|+
T Consensus 69 diP~~~L-cP~iP~R~nYi~~i~DlL~~~~~--~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl-~~A~ 143 (299)
T PF05971_consen 69 DIPEGRL-CPPIPNRLNYIHWIADLLASSNP--GIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSL-ESAR 143 (299)
T ss_dssp ---TTS-----HHHHHHHHHHHHHHHT--TC--GCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHH-HHHH
T ss_pred cCCCCCc-CCCCchhHHHHHHHHHHhhcccc--ccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHH-HHHH
Confidence 5565443 45432 233345555654210 001256899998887644 443333 455 699999999999 9999
Q ss_pred HhHHHh-CCCCceEEEEecHH-HHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 197 PNLEWT-GFLDVSSIHTVRVE-TFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 197 ~N~~~~-gl~~~v~ii~gD~~-~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+|++.| +++++|+++...-. .++.. +....+.||+.++||||..
T Consensus 144 ~nv~~N~~L~~~I~l~~~~~~~~i~~~---i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 144 ENVERNPNLESRIELRKQKNPDNIFDG---IIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp HHHHHT-T-TTTEEEEE--ST-SSTTT---STT--S-EEEEEE-----S
T ss_pred HHHHhccccccceEEEEcCCccccchh---hhcccceeeEEecCCcccc
Confidence 999999 99999998865322 12211 1123468999999999865
No 205
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.18 E-value=1.9e-06 Score=68.92 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=44.1
Q ss_pred EEECCCcchHHHHHHH---cCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 160 LDLYSGTGSVGIEAIS---RGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas---~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
|++|+..|..++.+++ .+. .+++++|..+. . +..+++++..++.++++++++|..+.+.... .+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEE
Confidence 6889888887765433 222 37999999996 3 4556666667777789999999998887653 3789999
Q ss_pred EECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEE
Q 021116 236 SVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 236 ~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~ 268 (317)
++|.... ++.....+. ..+.|+|||+|++.
T Consensus 74 ~iDg~H~---~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHS---YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCC---HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9997532 333333332 12589999999874
No 206
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=98.17 E-value=1.6e-06 Score=82.24 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcchHHH-HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGI-EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~I-eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..|+|||+|.|.+++ .+.+.||+.|+|+|.||+++ +.+|+|++.|++.++..++.+|-... ..+...|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd~R~~--------~~~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMDRCRITEGDNRNP--------KPRLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHHHHHhhhcccccc--------Cccccch
Confidence 46889999999999999 57788999999999999999 99999999999988888888885532 2346788
Q ss_pred EEEECC-CCCCccHHHHHHHHHHcCCcCCCe-EEEEEeCC
Q 021116 234 YMSVTP-PYTAVDYEVLMAQISKSALVGKDS-FIVVEYPL 271 (317)
Q Consensus 234 lV~~dP-Py~~~~~~~~l~~L~~~~lLkpgG-~ivv~~~~ 271 (317)
-|.+.. |-........++.|. .+|| ++-+..+.
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk-----~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALK-----PEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHHHHhh-----hcCCcEEEEeccc
Confidence 888864 333334555555543 2344 66676553
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.14 E-value=5.6e-05 Score=67.54 Aligned_cols=122 Identities=19% Similarity=0.115 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+.+.+-+...... ...+.+++|+|+|.|-=|+.++ .+...+++.+|.+..-+ ...+.=++.+|++| +++++
T Consensus 29 ~~~~~Hi~DSL~~~~~~--~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~n-v~v~~ 104 (184)
T PF02527_consen 29 EIWERHILDSLALLPFL--PDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLSN-VEVIN 104 (184)
T ss_dssp HHHHHHHHHHHGGGGCS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-SS-EEEEE
T ss_pred HHHHHHHHHHHHhhhhh--ccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCCC-EEEEE
Confidence 44556787877553211 1123389999999998888644 34556799999999998 99999999999975 99999
Q ss_pred ecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 213 VRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 213 gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++++. .....||+|++= ....+..+++... ++++++|.+++--...
T Consensus 105 ~R~E~~--------~~~~~fd~v~aR---Av~~l~~l~~~~~--~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 105 GRAEEP--------EYRESFDVVTAR---AVAPLDKLLELAR--PLLKPGGRLLAYKGPD 151 (184)
T ss_dssp S-HHHT--------TTTT-EEEEEEE---SSSSHHHHHHHHG--GGEEEEEEEEEEESS-
T ss_pred eeeccc--------ccCCCccEEEee---hhcCHHHHHHHHH--HhcCCCCEEEEEcCCC
Confidence 999881 125789999995 3345677776654 5899999999887654
No 208
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.13 E-value=7.1e-05 Score=71.10 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcC---CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG---CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G---a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
...+|||++||.|.--+.++... ..+|...|.++..+ +..++-++..|+++.++|.++|+++...... -...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~----l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAA----LDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhc----cCCC
Confidence 56899999999999998887642 35899999999999 9999999999999877999999988643321 2467
Q ss_pred ccEEEECCCCCCc-c---HHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 232 FDYMSVTPPYTAV-D---YEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 232 fDlV~~dPPy~~~-~---~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+|++++..=|... + ....+..+. ..+.|||+++...-.-+
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~--~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLA--RALEPGGYLIYTGQPWH 253 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHH--HHhCCCcEEEEcCCCCC
Confidence 8999987655432 1 233444444 47999999887654333
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00014 Score=69.17 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=81.2
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC--C-CCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 157 GRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG--F-LDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g--l-~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++||=+|-|.|+..-++++-. ..+++.||+|+..+ +++++-+.... . +.+++++.+|..+++... ..+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcC
Confidence 699999999999999988865 57899999999999 99998665432 2 368999999999999765 2489
Q ss_pred cEEEECC--CCCC--cc-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTP--PYTA--VD-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dP--Py~~--~~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+||+|- |-+. .. -.+..+.+. +.|+++|++++.+.
T Consensus 151 DvIi~D~tdp~gp~~~Lft~eFy~~~~--~~L~~~Gi~v~q~~ 191 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTEEFYEGCR--RALKEDGIFVAQAG 191 (282)
T ss_pred CEEEEcCCCCCCcccccCCHHHHHHHH--HhcCCCcEEEEecC
Confidence 9999963 2111 11 244555554 48999999999843
No 210
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.13 E-value=4.4e-05 Score=74.38 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=84.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHh-----CC-CCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWT-----GF-LDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~-----gl-~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.-.+||=+|-|-|...-|+++.. ..+++.||.||+++ +.++.|...- .+ +.+++++..|+.+|++..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----- 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----- 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-----
Confidence 35789999999999998988864 78999999999999 9999664332 12 247899999999999875
Q ss_pred CCCCccEEEECCCCCC-c----cHHHHHHHHHHcCCcCCCeEEEEEeCCCCCcc
Q 021116 228 KDGPFDYMSVTPPYTA-V----DYEVLMAQISKSALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~-~----~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~ 276 (317)
.+.||.||+|-|--. . .|..-+=.+. ++.|+++|++++.....-.-+
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll-~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLL-SRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHH-HHhcCcCceEEEecCCCccCC
Confidence 368999999865321 1 2332222232 368999999999877554333
No 211
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.11 E-value=1.8e-05 Score=76.77 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=71.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC---------CCCceEEEEecHHHHHHHHhhh
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG---------FLDVSSIHTVRVETFLERAEQF 225 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g---------l~~~v~ii~gD~~~~l~~~~~~ 225 (317)
++.+|||||||-|.-..--...+..+++++|++..++ +.|++-.+... ..=...++.+|+....- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si-~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l-~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESI-EEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL-REKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH-HCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHH-HHHHHHHHHhccccccccccccchhheeccccccchh-hhhc
Confidence 6789999999988766555566788999999999999 89988762211 11125678888764211 1111
Q ss_pred cCCCCCccEEEECCCCCC--ccHHHHHHHHH-HcCCcCCCeEEEEEeCCCCCc
Q 021116 226 VGKDGPFDYMSVTPPYTA--VDYEVLMAQIS-KSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~--~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~~~l 275 (317)
......||+|-+-=-.+. ...+..-.+|. .+..|+|||+++..++....+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 222358999998633222 22222222332 135899999999988765544
No 212
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.09 E-value=4.8e-06 Score=78.55 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=56.7
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+|+|+|||.|.+...+...|...|.++|+|+.++ +..+.|.... ++.+|+.++.... ....+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~-------~~~~Di~~~~~~~-----~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNK-------LIEGDITKIDEKD-----FIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCC-------CccCccccCchhh-----cCCCCCEEEe
Confidence 6899999999998877778888899999999998 9988886421 4567777654321 0256999999
Q ss_pred CCCCC
Q 021116 238 TPPYT 242 (317)
Q Consensus 238 dPPy~ 242 (317)
+||+.
T Consensus 69 gpPCq 73 (275)
T cd00315 69 GFPCQ 73 (275)
T ss_pred CCCCh
Confidence 99975
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4e-05 Score=69.64 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CC--CEEEEEeCCHHHHHHHHHHhHHHhCC---------CC
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GC--SEVHFVEMDPWVVSNVLIPNLEWTGF---------LD 206 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga--~~V~aVDin~~al~~~ar~N~~~~gl---------~~ 206 (317)
.+|+.|.... .++.++||+|+|||.++-.++.+ |+ ..+++||.-++.+ +.+++|++..-- ..
T Consensus 71 ~~le~L~~~L-----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 71 TALEYLDDHL-----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHhh-----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhccC
Confidence 4455555321 46899999999999998765532 32 2249999999999 999999987641 13
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++.++.+|...... ...+||.|.+..- .....++++++ |+++|.+++--.
T Consensus 145 ~l~ivvGDgr~g~~-------e~a~YDaIhvGAa-a~~~pq~l~dq------L~~gGrllip~~ 194 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYA-------EQAPYDAIHVGAA-ASELPQELLDQ------LKPGGRLLIPVG 194 (237)
T ss_pred ceEEEeCCccccCC-------ccCCcceEEEccC-ccccHHHHHHh------hccCCeEEEeec
Confidence 46788899876543 2468999999741 12244555554 578888877544
No 214
>PHA01634 hypothetical protein
Probab=98.06 E-value=8.9e-06 Score=68.50 Aligned_cols=74 Identities=14% Similarity=0.041 Sum_probs=61.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
..+++|+|+|++.|.-+|..+.+||++|+++|.++... +..++|++.|.+-|+..- .++ |- +.-+.||
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~v~-~~e---W~-------~~Y~~~D 94 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKAVM-KGE---WN-------GEYEDVD 94 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeeceee-ccc---cc-------ccCCCcc
Confidence 57999999999999999999999999999999999998 999999999988766432 222 22 2247899
Q ss_pred EEEECC
Q 021116 234 YMSVTP 239 (317)
Q Consensus 234 lV~~dP 239 (317)
+..+|-
T Consensus 95 i~~iDC 100 (156)
T PHA01634 95 IFVMDC 100 (156)
T ss_pred eEEEEc
Confidence 999983
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.05 E-value=1.6e-05 Score=72.09 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=75.5
Q ss_pred EEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 159 WLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
|.|+||--|.+++.++.+|. .+|+++|+++..+ +.|++|++.+|+.+++++..+|..+.+.. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999999885 5799999999999 99999999999999999999998776642 133788877
Q ss_pred CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC-ccc--cCCCeEEEEEee
Q 021116 238 TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD-MLD--TCGCLVKIKDRR 289 (317)
Q Consensus 238 dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~-l~~--~~~~~~~~~~r~ 289 (317)
-.. +.....++++... ..+.....+++.-..... +-. ...+|.++++.-
T Consensus 73 AGM-GG~lI~~ILe~~~--~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 73 AGM-GGELIIEILEAGP--EKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EEE--HHHHHHHHHHTG--GGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred ecC-CHHHHHHHHHhhH--HHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 421 1112333443322 234444466664443322 111 146788877654
No 216
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.03 E-value=1.7e-05 Score=66.30 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred eEEEECCCcchHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 158 RWLDLYSGTGSVGIEAISRGCS-EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~-~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
.+||+|||+|..++.++..+.. +|+++|.++.++ +.+++|++.+++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 3899999999999988877653 899999999998 99999999998865 8888877653
No 217
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.02 E-value=3.9e-05 Score=70.29 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...-+||+|||||..+-.+...|. ..++||+++.|+ +.|.+ +.. + -.++.+|+-+- +|...++||-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML-~~a~~--~e~--e--gdlil~DMG~G------lpfrpGtFDg 115 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSML-EQAVE--REL--E--GDLILCDMGEG------LPFRPGTFDG 115 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHH-HHHHH--hhh--h--cCeeeeecCCC------CCCCCCccce
Confidence 467899999999999976666674 699999999999 99986 222 2 13677887654 3556799998
Q ss_pred EEE
Q 021116 235 MSV 237 (317)
Q Consensus 235 V~~ 237 (317)
||+
T Consensus 116 ~IS 118 (270)
T KOG1541|consen 116 VIS 118 (270)
T ss_pred EEE
Confidence 885
No 218
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.00 E-value=8.1e-06 Score=75.42 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=68.6
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
.++|+|||+|..++-++.. .++|+|+|.++.++ +.|++.-...-.....+....++.+++ +.+++.|+|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~~t~~~ms~~~~v~L~-------g~e~SVDlI~~ 106 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYCHTPSTMSSDEMVDLL-------GGEESVDLITA 106 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccccCCcccccccccccc-------CCCcceeeehh
Confidence 8999999999666545444 57899999999999 988774322111111334444444433 33578999998
Q ss_pred CCCCCCccHHHHHHHHHHcCCcCCCe-EEEEEeCC
Q 021116 238 TPPYTAVDYEVLMAQISKSALVGKDS-FIVVEYPL 271 (317)
Q Consensus 238 dPPy~~~~~~~~l~~L~~~~lLkpgG-~ivv~~~~ 271 (317)
-=-.++.+.++..+.+. ++|+++| ++.+-+-.
T Consensus 107 Aqa~HWFdle~fy~~~~--rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAY--RVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhHHhhchHHHHHHHH--HHcCCCCCEEEEEEcc
Confidence 65566677888887765 5777655 76665543
No 219
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.00 E-value=4.8e-05 Score=73.07 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=89.2
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC-CCC--
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-FLD-- 206 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g-l~~-- 206 (317)
|-..-.++..+.+.... ++..++|||||-|.=.+---+.|+.+++++||..-.+ +.|++-.+... ..+
T Consensus 100 RnfNNwIKs~LI~~y~~--------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~ 170 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTK--------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKF 170 (389)
T ss_pred hhhhHHHHHHHHHHHhc--------cccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcc
Confidence 33344455556555543 5788999999999988877778888999999999998 99988655332 212
Q ss_pred --ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC--CccHHHHHHHHH-HcCCcCCCeEEEEEeCCCCC
Q 021116 207 --VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT--AVDYEVLMAQIS-KSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 207 --~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~--~~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~~~ 274 (317)
.+.++.+|+....-. ..+...+++||+|-+-=-++ ....+.+-.+|. .+..|+|||+++-..+...-
T Consensus 171 ~f~a~f~~~Dc~~~~l~-d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~ 242 (389)
T KOG1975|consen 171 IFTAVFIAADCFKERLM-DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDV 242 (389)
T ss_pred cceeEEEEeccchhHHH-HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHH
Confidence 368999998654211 11223345599998863333 233443333333 34689999999988775443
No 220
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.97 E-value=4.5e-05 Score=75.37 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.||||+||-.|.-+...++ .+-..|+|.|.|...+ ...+.|+.+.|+.+ ..+.+.|..++.... ..++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~~ 312 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPGS 312 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCc-eEEEccCcccccccc-----cCcc
Confidence 4689999999999977655332 3445699999999999 99999999999976 567778877553221 1248
Q ss_pred ccEEEECCCCCC-cc------------------HHHHHHHHH--HcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTA-VD------------------YEVLMAQIS--KSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~-~~------------------~~~~l~~L~--~~~lLkpgG~ivv~ 268 (317)
||-|++|.|... +. +..+-+.|. +..++++||+||-+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 999999999864 10 111122221 34689999998754
No 221
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=0.00011 Score=75.14 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+..+||+|||.|.+.++.+.... ..++|||+....+ ..+...+...|+.| +.++++|+..+...+ .+.++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~-~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~-----~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGV-ANVLKLAGEQNITN-FLLFPNNLDLILNDL-----PNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHcCCCe-EEEEcCCHHHHHHhc-----Cccccc
Confidence 467899999999999999877643 4699999999988 77777777788865 889999987655443 356799
Q ss_pred EEEECC--CCCCc-------cHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 234 YMSVTP--PYTAV-------DYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 234 lV~~dP--Py~~~-------~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.|+++= |+.+. ...+.++.+. ++|++||.|.+.++..
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~--~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQ--DKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHH--HhcCCCCEEEEEcCCH
Confidence 988842 24332 1355666665 4899999999987744
No 222
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.91 E-value=0.00021 Score=66.32 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+.|+++|=+|=.- ..++.+ +....++|+.+|+|++.+ +..++.++..|+. ++.+..|+.+-+... -.++|
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF 113 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence 5789998876433 344443 344567899999999999 9999999999985 999999998876532 14789
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCc-CCCeEEEEEeCCCC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALV-GKDSFIVVEYPLRT 273 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lL-kpgG~ivv~~~~~~ 273 (317)
|+++.||||......-.+..-.+ .| .+|+..++.....+
T Consensus 114 D~f~TDPPyT~~G~~LFlsRgi~--~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 114 DVFFTDPPYTPEGLKLFLSRGIE--ALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp SEEEE---SSHHHHHHHHHHHHH--TB-STT-EEEEEE-TTT
T ss_pred CEEEeCCCCCHHHHHHHHHHHHH--HhCCCCceEEEEEecCc
Confidence 99999999975332222222222 23 44557777776554
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.00016 Score=66.22 Aligned_cols=116 Identities=21% Similarity=0.146 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCC--CCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLR--PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~--~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
..+.+.+.+.+.+..... .. +.+++|+|+|.|-=|+.++ .....+|+.+|.+...+ ...++=.+.+|++| +
T Consensus 46 ~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~n-v 119 (215)
T COG0357 46 PEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLEN-V 119 (215)
T ss_pred HHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCCC-e
Confidence 346677788887765311 22 5899999999998888744 44344599999999998 99999999999965 9
Q ss_pred EEEEecHHHHHHHHhhhcCCCCC-ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 209 SIHTVRVETFLERAEQFVGKDGP-FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~-fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+++++.++++-.. .. ||+|.+- ....+..+.+... +++++||.++
T Consensus 120 ~i~~~RaE~~~~~--------~~~~D~vtsR---Ava~L~~l~e~~~--pllk~~g~~~ 165 (215)
T COG0357 120 EIVHGRAEEFGQE--------KKQYDVVTSR---AVASLNVLLELCL--PLLKVGGGFL 165 (215)
T ss_pred EEehhhHhhcccc--------cccCcEEEee---hccchHHHHHHHH--HhcccCCcch
Confidence 9999999987532 23 9999985 3345566666554 5899988865
No 224
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.80 E-value=4.2e-05 Score=77.86 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc---C--CCEEEEEeCCHHHHHHHHHHhHHHhCC
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---G--CSEVHFVEMDPWVVSNVLIPNLEWTGF 204 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~---G--a~~V~aVDin~~al~~~ar~N~~~~gl 204 (317)
..|...|.+.+..++.+ .+..+|+|++||||++-+.+... . -...+|.|+++... .+|+-|+-.+|+
T Consensus 168 fyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi 239 (489)
T COG0286 168 FYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGI 239 (489)
T ss_pred cCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCC
Confidence 45666777788777765 24559999999999998876542 1 13599999999998 999999999998
Q ss_pred CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCC
Q 021116 205 LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 205 ~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~ 242 (317)
...+.+..+|...-..... ....+.||+|++||||.
T Consensus 240 ~~~~~i~~~dtl~~~~~~~--~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDD--KDDKGKFDFVIANPPFS 275 (489)
T ss_pred CccccccccccccCCcccc--cCCccceeEEEeCCCCC
Confidence 6334556665432211000 01236799999999996
No 225
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.78 E-value=6.5e-05 Score=68.79 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=64.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|+|+|+|+|.++++++++. .-+++..|. |..+ +.+++ .++++++.+|+++-+ +.+|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~-~~~~~-------~~rv~~~~gd~f~~~----------P~~D 160 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVI-EQAKE-------ADRVEFVPGDFFDPL----------PVAD 160 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHH-CCHHH-------TTTEEEEES-TTTCC----------SSES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhh-hcccc-------ccccccccccHHhhh----------cccc
Confidence 45689999999999999887653 347999999 7777 77777 578999999987322 3399
Q ss_pred EEEECCCCCCcc---HHHHHHHHHHcCCcCCC--eEEEEEeC
Q 021116 234 YMSVTPPYTAVD---YEVLMAQISKSALVGKD--SFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~---~~~~l~~L~~~~lLkpg--G~ivv~~~ 270 (317)
++++-=-.+... -..+|+.+. ..|+|| |.|++...
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~--~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAA--AALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHH--HHSEECTTEEEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHH--HHhCCCCCCeEEEEee
Confidence 999852222112 233444443 468988 88877654
No 226
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=4.2e-05 Score=76.86 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++-+|||-.|+||.-+|..+. .|..+|++-|.|+.++ +..++|++.|+.++.++....|+....-.. +.....|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~---~~~~~~F 184 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEH---PMVAKFF 184 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhc---ccccccc
Confidence 467899999999999998665 3667899999999999 999999999999998999999988765332 1223689
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|+|=+|| |+.. ...++... +-+..||++.+.+.
T Consensus 185 DvIDLDP-yGs~--s~FLDsAv--qav~~gGLL~vT~T 217 (525)
T KOG1253|consen 185 DVIDLDP-YGSP--SPFLDSAV--QAVRDGGLLCVTCT 217 (525)
T ss_pred ceEecCC-CCCc--cHHHHHHH--HHhhcCCEEEEEec
Confidence 9999996 7643 22333322 24688999998774
No 227
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.73 E-value=0.00017 Score=67.82 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=64.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+++|||||.|.+.+-+-..|...|.++|+|+.++ +.-+.|.. ....+|+.++.... ++ . .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~--------~~~~~Di~~~~~~~--l~--~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP--------EVICGDITEIDPSD--LP--K-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT--------EEEESHGGGCHHHH--HH--H-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc--------cccccccccccccc--cc--c-cceEEEe
Confidence 6999999999999877778888899999999998 89888874 46778988775432 11 1 5999999
Q ss_pred CCCCCCc---------------cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 238 TPPYTAV---------------DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 238 dPPy~~~---------------~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.||.... .+.+.++.+. .++|.- +++|.-
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~---~~~Pk~-~~~ENV 111 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVK---ELKPKY-FLLENV 111 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHH---HHS-SE-EEEEEE
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHh---hccceE-EEeccc
Confidence 9996421 1345555554 367755 445543
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=97.72 E-value=0.00041 Score=65.30 Aligned_cols=99 Identities=9% Similarity=-0.008 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
...++||=+|-|-|...-|.++-. .+|+.||+|++.+ +.+++-+-.. +++ .|++++. +.... ..+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~ 138 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIK 138 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCC
Confidence 356899999999999999998864 3899999999999 9999943322 233 4677775 12111 136
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+||+|-.|....| +.+. +.|+|||++++...
T Consensus 139 ~fDVIIvDs~~~~~fy----~~~~--~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 139 KYDLIICLQEPDIHKI----DGLK--RMLKEDGVFISVAK 172 (262)
T ss_pred cCCEEEEcCCCChHHH----HHHH--HhcCCCcEEEECCC
Confidence 8999999965553333 3333 36899999998654
No 229
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.72 E-value=7.5e-05 Score=68.22 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...+.||.|||.|.++-.++..-+.+|..||.++.-+ +.|++.+...+ ....++++.-+.+|... ..+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEeE
Confidence 4679999999999999877766688999999999999 99987665421 23357888888888642 368999
Q ss_pred EEECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~~~~~ 272 (317)
|.+.---..=.-+++++.|. ....|+|+|+|++-.+..
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99962111001245555553 134689999999977643
No 230
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.66 E-value=0.00015 Score=62.88 Aligned_cols=80 Identities=10% Similarity=-0.036 Sum_probs=55.6
Q ss_pred EEEeCCHHHHHHHHHHhHHHh--CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCC-CCccHHHHHHHHHHcCC
Q 021116 182 HFVEMDPWVVSNVLIPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY-TAVDYEVLMAQISKSAL 258 (317)
Q Consensus 182 ~aVDin~~al~~~ar~N~~~~--gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy-~~~~~~~~l~~L~~~~l 258 (317)
+++|+++.++ +.|+++.+.. +..++++++++|+.+. +..+++||+|++.--. ...+....++.+. ++
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~--rv 70 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY--RV 70 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHH--HH
Confidence 4799999999 9998776532 2234689999998764 2345789999986211 1224555666664 58
Q ss_pred cCCCeEEEEEeCC
Q 021116 259 VGKDSFIVVEYPL 271 (317)
Q Consensus 259 LkpgG~ivv~~~~ 271 (317)
|+|||.+++..-.
T Consensus 71 LkpGG~l~i~d~~ 83 (160)
T PLN02232 71 LKPGSRVSILDFN 83 (160)
T ss_pred cCcCeEEEEEECC
Confidence 9999999876543
No 231
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.50 E-value=0.00036 Score=61.95 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~ 197 (317)
..+.+.+..... .+++.|||+|||||+.+++|...|- +.+++|++++.+ ++|++
T Consensus 178 ~~l~~~lI~~~t--------~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~-~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST--------NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYC-EIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS---------TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHH-HHHHH
T ss_pred HHHHHHHHHhhh--------ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHH-HHhcC
Confidence 445555554443 3689999999999999998888874 699999999998 88864
No 232
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00018 Score=66.52 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCCC
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~ 231 (317)
+.++.++||+|+-||.|+-.++.+||++|+|||....-++.-.|. +.++.+++ .++..+-... -.+.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~-----~~~~ 144 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPED-----FTEK 144 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHH-----cccC
Confidence 368999999999999999999999999999999987655122222 23454444 3444332211 1246
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
.|++++|-.|. .+..++..+. .++++++.++.-.
T Consensus 145 ~d~~v~DvSFI--SL~~iLp~l~--~l~~~~~~~v~Lv 178 (245)
T COG1189 145 PDLIVIDVSFI--SLKLILPALL--LLLKDGGDLVLLV 178 (245)
T ss_pred CCeEEEEeehh--hHHHHHHHHH--HhcCCCceEEEEe
Confidence 89999998664 3445555554 3677777766543
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.47 E-value=0.00035 Score=67.98 Aligned_cols=69 Identities=17% Similarity=0.093 Sum_probs=53.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.++||+||++|.++-.++++|+ +|++||..+-+ . ++.. ..+|+.+++|...+... .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~--~----~L~~---~~~V~h~~~d~fr~~p~-------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA--Q----SLMD---TGQVEHLRADGFKFRPP-------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC--H----hhhC---CCCEEEEeccCcccCCC-------CCCCC
Confidence 4689999999999999999999998 79999966533 2 2222 24688999998776421 46799
Q ss_pred EEEECC
Q 021116 234 YMSVTP 239 (317)
Q Consensus 234 lV~~dP 239 (317)
++++|.
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999995
No 234
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0012 Score=60.57 Aligned_cols=107 Identities=20% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++.+||++|=|.|.+.-....+...+-+-||.+|..+ +..|.+.= +-.++|.++.+-..+.++.+. ++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw--~ek~nViil~g~WeDvl~~L~-----d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGW--REKENVIILEGRWEDVLNTLP-----DKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccc--ccccceEEEecchHhhhcccc-----ccCcc
Confidence 36899999999999988755556666677899999998 88887642 223568899999888887663 57799
Q ss_pred EEEECCCCCCccHHHHHHHHH-HcCCcCCCeEEEEEeC
Q 021116 234 YMSVTPPYTAVDYEVLMAQIS-KSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~-~~~lLkpgG~ivv~~~ 270 (317)
-|+-|- |. ..|+++.+.-. .-++|||+|++-....
T Consensus 172 GI~yDT-y~-e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 172 GIYYDT-YS-ELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred eeEeec-hh-hHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 999995 32 34555554332 2379999999866544
No 235
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.42 E-value=0.0001 Score=73.05 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=59.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLE 220 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~ 220 (317)
..+..|-|+|||.|-+++.|+..|+ +|++-|.|++++ ++++.|+..|.+... +++++.|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesi-k~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESI-KWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHH-HHHHHhccccccchhheeeecccHHHHhh
Confidence 3578999999999999999999986 699999999999 999999999999866 9999999999984
No 236
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.39 E-value=0.00095 Score=60.21 Aligned_cols=121 Identities=9% Similarity=0.114 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcc----hHHHHHHH---cCCC---EEEEEeCCHHHHHHHHHHhH---HH-hCC----------------
Q 021116 155 RPGRWLDLYSGTG----SVGIEAIS---RGCS---EVHFVEMDPWVVSNVLIPNL---EW-TGF---------------- 204 (317)
Q Consensus 155 ~~~rVLDlgcGtG----~l~Ieaas---~Ga~---~V~aVDin~~al~~~ar~N~---~~-~gl---------------- 204 (317)
+.-+|+..||+|| ++++.+.. .... +|+|.|+|+.++ +.|++-. .. -++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 4579999999999 55554443 1222 799999999999 8887521 00 011
Q ss_pred -------CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc---cHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 205 -------LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV---DYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 205 -------~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~---~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
.++|+|.+.|+.+... ..+.||+||+---...- .-..+++.+. ..|+|||++++.+.. .
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~--~~L~pgG~L~lG~sE--~ 178 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLH--RSLKPGGYLFLGHSE--S 178 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHG--GGEEEEEEEEE-TT----
T ss_pred eeEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHH--HHcCCCCEEEEecCc--c
Confidence 2357777777766111 23689999994221111 2345566665 589999999998764 3
Q ss_pred ccccCCCeEEEEE
Q 021116 275 MLDTCGCLVKIKD 287 (317)
Q Consensus 275 l~~~~~~~~~~~~ 287 (317)
+......|+.++.
T Consensus 179 l~~~~~~f~~~~~ 191 (196)
T PF01739_consen 179 LPELPDLFEPVDS 191 (196)
T ss_dssp STTT-TTCEEECT
T ss_pred CCCCCCCeEEcCC
Confidence 3334456665543
No 237
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.39 E-value=4.8e-05 Score=66.68 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhh-hcCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQ-FVGKD 229 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~-~~~~~ 229 (317)
.+.+|||+||++|+++-.++.++ ..+|++||+.+..- . .| +..+++|+.+. ...... +....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~--~--~~---------~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP--L--QN---------VSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TT---------EEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc--c--cc---------eeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999998888887 56899999998631 1 12 23333333211 011110 11123
Q ss_pred CCccEEEECC-CCCCcc--------HHHHHHHHH-HcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTP-PYTAVD--------YEVLMAQIS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dP-Py~~~~--------~~~~l~~L~-~~~lLkpgG~ivv~~~~ 271 (317)
..||+|++|. |...+. ..-.+..+. ...+|++||.+++-.-.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 6899999997 222221 111122221 22478999988876544
No 238
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00034 Score=64.87 Aligned_cols=109 Identities=9% Similarity=0.121 Sum_probs=70.6
Q ss_pred eEEEECCCcchHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 158 RWLDLYSGTGSVGIEAISRGC---SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga---~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
++|++|||.|.....+++-.. -.|+++|.+|.|+ +..++|...+- +++.....|+..-- + +-+...+++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e--~~~~afv~Dlt~~~--~-~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDE--SRVEAFVWDLTSPS--L-KEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccch--hhhcccceeccchh--c-cCCCCcCccce
Confidence 799999999999988776432 3799999999999 99999987653 34444444543221 0 11223467887
Q ss_pred EEECC---CCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 235 MSVTP---PYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 235 V~~dP---Py~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
|.+== --+.......++.+. ++|+|||.+++-.-.+-+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~--~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLR--TLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHH--HHhCCCcEEEEeecccch
Confidence 76520 001123455555554 589999999987444433
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.37 E-value=0.0012 Score=55.90 Aligned_cols=63 Identities=16% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCcchHHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHhHHHhC--CCCceEEEEecHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-----RGCSEVHFVEMDPWVVSNVLIPNLEWTG--FLDVSSIHTVRVET 217 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-----~Ga~~V~aVDin~~al~~~ar~N~~~~g--l~~~v~ii~gD~~~ 217 (317)
.+...|+|+|||-|.++..++. ...-+|++||.++..+ +.+.+..+..+ +.++.++..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhh
Confidence 3578999999999999998766 4345799999999998 89988888877 54556666666554
No 240
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.36 E-value=0.00015 Score=67.16 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=50.8
Q ss_pred CeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--CC------CCceEEEEecHHHHHHHHhhhcCC
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT--GF------LDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~--gl------~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
.+|||.=||-|.=++.++..|+ +|+++|.||... .+.+.-+++. +- ..+++++++|..+++.. .
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia-~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~ 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIA-ALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------P 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHH-HHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------H
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHH-HHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------c
Confidence 4899999999999998888887 699999999886 7777655443 11 13789999999988752 2
Q ss_pred CCCccEEEECCCCCC
Q 021116 229 DGPFDYMSVTPPYTA 243 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~ 243 (317)
..+||+|.+||.|..
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 478999999999864
No 241
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.35 E-value=0.00071 Score=63.41 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=61.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
...++||+|||-|.++..++.. .++|++-|.++.|. ..++ .-|+ +++ |..+|.+ .+.+||+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~----~kg~----~vl--~~~~w~~-------~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLS----KKGF----TVL--DIDDWQQ-------TDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHH----hCCC----eEE--ehhhhhc-------cCCceEE
Confidence 5678999999999999877554 56799999999996 4332 3343 233 3333432 2368999
Q ss_pred EEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 235 MSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 235 V~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|.+ |-==....-..+++.+.. .|+|+|++++.
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~--~l~p~G~lilA 187 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRR--ALKPNGRLILA 187 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHH--HhCCCCEEEEE
Confidence 986 210011123456666653 68999998865
No 242
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.34 E-value=0.0024 Score=61.41 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 137 KGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 137 ~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
.+.+.+.|.. .++..++|.=+|-|.-+..++.. +..+|+++|.|+.++ +.++++++.+ .+++++++++.
T Consensus 9 l~Evl~~L~~-------~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L~~~--~~R~~~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGLNI-------KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERLSDF--EGRVVLIHDNF 78 (305)
T ss_pred HHHHHHhcCc-------CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHhhc--CCcEEEEeCCH
Confidence 3444455543 35789999999999999988765 336899999999999 9999988754 46799999998
Q ss_pred HHHHHHHhhhcCCCCCccEEEECC
Q 021116 216 ETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
.++...+..+ ...++|.|++|-
T Consensus 79 ~~l~~~l~~~--~~~~vDgIl~DL 100 (305)
T TIGR00006 79 ANFFEHLDEL--LVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHhc--CCCcccEEEEec
Confidence 8876554321 124699999974
No 243
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0019 Score=56.11 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=65.5
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhH
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~ 199 (317)
++.+|. -|.+.+-.+.+.+.+.. .+..+.+|+|+|-|.+-+.+++-|....+++|.||+.+ ..+|-.+
T Consensus 48 R~cvPY----VpAtteQv~nVLSll~~-------n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a 115 (199)
T KOG4058|consen 48 RLCVPY----VPATTEQVENVLSLLRG-------NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHA 115 (199)
T ss_pred eecccc----cCccHHHHHHHHHHccC-------CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHH
Confidence 455553 34333333344555543 34567999999999999988888877799999999998 9999988
Q ss_pred HHhCCCCceEEEEecHHHH
Q 021116 200 EWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~ 218 (317)
-+.|+...++|...|+..+
T Consensus 116 ~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 116 WRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHhcccchhhhhhhhhhc
Confidence 8889888888888887654
No 244
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00042 Score=69.04 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
..-|||+|+|||.+++.|+..|+..|+++|.-..|. ++|++=..+||..++|++++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeecc
Confidence 346899999999999999999999999999999998 999999999999999988764
No 245
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.00068 Score=65.54 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=58.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC-CccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG-PFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~-~fDl 234 (317)
.-+++|||||.|.+.+-+...|..-+.++|+|+.++ +.-+.|... ..++..|+.++..... .. .+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCC------CceeechHhhcChhhc-----cccCCCE
Confidence 357999999999999877777887899999999998 888877653 3467788876653321 12 7899
Q ss_pred EEECCCCC
Q 021116 235 MSVTPPYT 242 (317)
Q Consensus 235 V~~dPPy~ 242 (317)
++..||..
T Consensus 71 ligGpPCQ 78 (328)
T COG0270 71 LIGGPPCQ 78 (328)
T ss_pred EEeCCCCc
Confidence 99999975
No 246
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.25 E-value=0.00037 Score=66.44 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCeEEEECCCcc----hHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhHHH---------------h--------C
Q 021116 156 PGRWLDLYSGTG----SVGIEAISRG-----CSEVHFVEMDPWVVSNVLIPNLEW---------------T--------G 203 (317)
Q Consensus 156 ~~rVLDlgcGtG----~l~Ieaas~G-----a~~V~aVDin~~al~~~ar~N~~~---------------~--------g 203 (317)
.-+|+..||.|| ++++.+...+ .-+|+|.|+|+.++ +.|++..-. + |
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 469999999999 5555443321 13699999999999 999876210 0 0
Q ss_pred -------CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC--CC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 204 -------FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP--YT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 204 -------l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP--y~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+.+.|+|.+.|+.+.. . ...+.||+|++--- |. ......+++.+. +.|+|||++++.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~--~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~--~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQ--W----AVPGPFDAIFCRNVMIYFDKTTQERILRRFV--PLLKPDGLLFAGHS 263 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCC--C----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHH--HHhCCCcEEEEeCc
Confidence 1234556666654310 0 01367999998321 21 113455666665 47999999999875
No 247
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.24 E-value=0.00055 Score=65.87 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=54.4
Q ss_pred EEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 159 WLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
|+|||||.|.+.+-+-..|..-+.++|+++.++ +..+.|.. + .++.+|+.++.... -+.+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEec
Confidence 689999999999877778887788999999998 88888853 2 34568888764221 2468999999
Q ss_pred CCCC
Q 021116 239 PPYT 242 (317)
Q Consensus 239 PPy~ 242 (317)
||..
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 9964
No 248
>PRK11524 putative methyltransferase; Provisional
Probab=97.20 E-value=0.0012 Score=62.47 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
.+|+.|||.|||||+.++.|...|- +.+|+|++++.+ +.|++-++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHH-HHHHHHHH
Confidence 4789999999999999998888774 699999999998 99988775
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.17 E-value=0.0013 Score=60.25 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+.++.|+||=-|.+++.+...+ +.+++++|+++..+ +.|.+|++.+++.+++++..+|....+.. +..+|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d 87 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID 87 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence 46679999999999999998876 57899999999999 99999999999999999999998665532 34789
Q ss_pred EEEEC
Q 021116 234 YMSVT 238 (317)
Q Consensus 234 lV~~d 238 (317)
+|++-
T Consensus 88 ~ivIA 92 (226)
T COG2384 88 VIVIA 92 (226)
T ss_pred EEEEe
Confidence 88875
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=97.15 E-value=0.00067 Score=64.19 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=41.4
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-c------------HHHHHHHH-H-HcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-D------------YEVLMAQI-S-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-~------------~~~~l~~L-~-~~~lLkpgG~ivv~~~~ 271 (317)
.+++++|+.+++..+ .+++||+||+||||..+ . +.+.+..+ . ..++|++||.+++.+..
T Consensus 9 ~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 9 KTIIHGDALTELKKI-----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CEEEeccHHHHHHhc-----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 578999999988654 25789999999999631 0 22222211 1 24799999999997664
No 251
>PRK13699 putative methylase; Provisional
Probab=97.02 E-value=0.0032 Score=57.95 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
.+++.|||+|||||+.+++|...|- +.+++|++++.+ +.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~-~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYH-RAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHH-HHHHHHHHHH
Confidence 3688999999999999998887775 699999999998 9998877654
No 252
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.98 E-value=0.0019 Score=55.29 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc-------cHHHHHHH
Q 021116 180 EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV-------DYEVLMAQ 252 (317)
Q Consensus 180 ~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~-------~~~~~l~~ 252 (317)
+|++.|+.++|+ +.+++.++..++.++++++...=.++..... .+++|+++.|-=|-.+ ..+..+..
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 699999999999 9999999999998899999866444432221 2479999998655432 13444444
Q ss_pred HHH-cCCcCCCeEEEEEeCCCCC
Q 021116 253 ISK-SALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 253 L~~-~~lLkpgG~ivv~~~~~~~ 274 (317)
+.+ ..+|++||++.+..-..+.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHhhccCCEEEEEEeCCCC
Confidence 432 2589999998876554443
No 253
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.98 E-value=0.0032 Score=57.21 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS 209 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ 209 (317)
|..++-++.+++.|..... ..+.+||+++||||--++..++. ..-+-.--|.++... .-.+..++..++.|-..
T Consensus 5 pAaeRNk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~ 79 (204)
T PF06080_consen 5 PAAERNKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRP 79 (204)
T ss_pred hhhhhCHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCC
Confidence 4456666666666655310 12336999999999999887653 333566679999887 77888888887765334
Q ss_pred EEEecHHHHH-HHHhhhcCCCCCccEEEECCCCCCcc---HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 210 IHTVRVETFL-ERAEQFVGKDGPFDYMSVTPPYTAVD---YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 210 ii~gD~~~~l-~~~~~~~~~~~~fDlV~~dPPy~~~~---~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
-+.-|+.+-. ......+.....||.||+--..+-.. .+.++... .++|++||.+++.-+-
T Consensus 80 P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a--~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 80 PLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGA--ARLLKPGGLLFLYGPF 143 (204)
T ss_pred CeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHH--HHhCCCCCEEEEeCCc
Confidence 4555654321 00000001235799999632122111 23333333 3689999999987553
No 254
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.96 E-value=0.032 Score=54.07 Aligned_cols=115 Identities=8% Similarity=-0.066 Sum_probs=70.2
Q ss_pred CCCeEEEECCCcchHHHH---HHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEE--EEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE---AIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSI--HTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie---aas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~i--i~gD~~~~l~~~~~~~~ 227 (317)
++..++|+|||+|.-.-. ++. .+ ..+.++||++..++ +.+..++..-.+. .+++ +.+|..+.+..+.+ +.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~-~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKR-PE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCC-CeEEEEEEecHHHHHhhccc-cc
Confidence 566899999999976432 332 22 24689999999999 8998888733333 2444 88998877654321 00
Q ss_pred CCCCccEEEE-CCCCCCccHHHHHHHHHH-cC-CcCCCeEEEEEeCCC
Q 021116 228 KDGPFDYMSV-TPPYTAVDYEVLMAQISK-SA-LVGKDSFIVVEYPLR 272 (317)
Q Consensus 228 ~~~~fDlV~~-dPPy~~~~~~~~l~~L~~-~~-lLkpgG~ivv~~~~~ 272 (317)
......+++. .--.+....++....|.. .+ .|.||+.+++.....
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 1123455553 322222233444554443 24 689999999876544
No 255
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=96.96 E-value=0.0023 Score=59.70 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
|..+.||=.++..+++. ..+.+++|+.+... +..++|++. ..++++++.|.++.+..+. | ..++=-+|++||
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~-~~L~~~~~~---~~~v~v~~~DG~~~l~all--P-P~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDF-EALKKNFRR---DRRVRVHHRDGYEGLKALL--P-PPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHH-HHHTTS--T---TS-EEEE-S-HHHHHHHH---S--TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHH-HHHHHHhcc---CCccEEEeCchhhhhhhhC--C-CCCCCeEEEECC
Confidence 77888887777766554 57899999999998 999888764 2479999999998876652 1 223345999999
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
||.. .+|+.+.+.+.+...==+.|++.+-++..
T Consensus 134 pYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~ 167 (245)
T PF04378_consen 134 PYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIK 167 (245)
T ss_dssp ---STTHHHHHHHHHHHHHHH-TTSEEEEEEEES
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecc
Confidence 9964 47877777765321123567777777643
No 256
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0018 Score=59.94 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
...++|+|||.|.+.-.+..+|..+++.+|.+-.++ +.++. .+.+++. +....+|= +++ +....++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~-~qdp~i~--~~~~v~DE-E~L------df~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRD-AQDPSIE--TSYFVGDE-EFL------DFKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhc-cCCCceE--EEEEecch-hcc------cccccchhhh
Confidence 568999999999999888888988999999999998 77754 3335543 44555663 333 3356889999
Q ss_pred EECCCCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCc
Q 021116 236 SVTPPYTA-VDYEVLMAQISKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 236 ~~dPPy~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l 275 (317)
+...-.++ ++++..+-.+. ..|||+|.++.+.-...++
T Consensus 142 isSlslHW~NdLPg~m~~ck--~~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCK--LALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhhhccCchHHHHHH--HhcCCCccchhHHhccccH
Confidence 98654443 23444444443 3689999988765544444
No 257
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.93 E-value=0.025 Score=43.70 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=62.3
Q ss_pred EEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCC-CCccE
Q 021116 159 WLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKD-GPFDY 234 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~-~~fDl 234 (317)
++|+|||+|... .+..... ..++++|.++.++ +.++.+....+. ..+.+..+|.... + +... ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALGGVL------PFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEeccccCCC------CCCCCCceeE
Confidence 999999999975 2222221 3689999999998 664444322211 1156777776542 1 1122 37999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
+..............+..+. +.++++|.+++......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~--~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 123 VISLLVLHLLPPAKALRELL--RVLKPGGRLVLSDLLRD 159 (257)
T ss_pred EeeeeehhcCCHHHHHHHHH--HhcCCCcEEEEEeccCC
Confidence 95544332222344555544 47899999888776543
No 258
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.92 E-value=0.025 Score=51.70 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCCeEEEECCCcc----hHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEec-HHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTG----SVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVR-VETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG----~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD-~~~~l~~~~~~~~ 227 (317)
..-+.+++.+|+-| ++++.++++ -..++++|-.+++.+ ...++.+...++.+.++|+.+| ..+.+..+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~----- 113 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFVVGEAPEEVMPGL----- 113 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEEecCCHHHHHhhc-----
Confidence 34578899966543 455554443 345799999999887 7778888878888778998888 55666554
Q ss_pred CCCCccEEEECCCCCCccHH-HHHHHHHHcCCcCCCeEEEEEeCCCC
Q 021116 228 KDGPFDYMSVTPPYTAVDYE-VLMAQISKSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~-~~l~~L~~~~lLkpgG~ivv~~~~~~ 273 (317)
...|++++|- ...++. ++++.+ -+.+.|-+++..+...
T Consensus 114 --~~iDF~vVDc--~~~d~~~~vl~~~----~~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 114 --KGIDFVVVDC--KREDFAARVLRAA----KLSPRGAVVVCYNAFS 152 (218)
T ss_pred --cCCCEEEEeC--CchhHHHHHHHHh----ccCCCceEEEEecccc
Confidence 5789999994 333555 666654 3677777777776543
No 259
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.83 E-value=0.003 Score=64.10 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH----------Hhhh
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER----------AEQF 225 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~----------~~~~ 225 (317)
.-+++|||||.|.+.+-+-..|..-|.++|+|+.|+ +.-+.|.... ....++.+|+.++... ...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999877667887789999999998 8888885211 1123445666554210 0000
Q ss_pred cCCCCCccEEEECCCCC
Q 021116 226 VGKDGPFDYMSVTPPYT 242 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~ 242 (317)
...-+.+|+++..||..
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 00123689999999974
No 260
>PRK13699 putative methylase; Provisional
Probab=96.82 E-value=0.002 Score=59.32 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=41.5
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc------------cHHHHHHH-HH-HcCCcCCCeEEEEEeCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------------DYEVLMAQ-IS-KSALVGKDSFIVVEYPL 271 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~------------~~~~~l~~-L~-~~~lLkpgG~ivv~~~~ 271 (317)
++++++|+.+.+..+ +++++|+||.||||..+ .+.+.+.. +. ..|+|+|||.+++.+..
T Consensus 2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~ 74 (227)
T PRK13699 2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW 74 (227)
T ss_pred CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 368899999998776 46899999999999621 12222222 22 24799999999886554
No 261
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.79 E-value=0.0069 Score=56.62 Aligned_cols=111 Identities=27% Similarity=0.261 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC-----CCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG-----FLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g-----l~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..+||++|+|||..|+.++......|+.-|.-.. + +..+.|...++ +...+.+..-+..+.+... ...+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~----~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-V-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS----FRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-H-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh----hccC
Confidence 4579999999999999877755456776666543 3 45566644443 2222333222222111100 0123
Q ss_pred C-ccEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 231 P-FDYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 231 ~-fDlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
. ||+|++ |.-|....++.++..+.. +|..++++++.+..+..
T Consensus 161 ~~~DlilasDvvy~~~~~e~Lv~tla~--ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEESFEGLVKTLAF--LLAKDGTIFLAYPLRRD 204 (248)
T ss_pred CcccEEEEeeeeecCCcchhHHHHHHH--HHhcCCeEEEEEecccc
Confidence 4 899995 777877777777777653 67777788888887764
No 262
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.73 E-value=0.01 Score=56.41 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCeEEEECCCcchHHHH-HHHc-C-CCEEEEEeCCHHHHHHHHHHhHH-HhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 156 PGRWLDLYSGTGSVGIE-AISR-G-CSEVHFVEMDPWVVSNVLIPNLE-WTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ie-aas~-G-a~~V~aVDin~~al~~~ar~N~~-~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..+|+=+|||.=-++.- +++. + ...|+++|+|++|+ +.+++=++ ..|+.++++|+.+|+.+....+ ..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence 35999998776555433 3332 3 24699999999998 99988666 6677888999999987653222 57
Q ss_pred ccEEEECCCCC--CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYT--AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~--~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
||+|++-.-=+ ...-.++++.+.. .+++|+.+++-..
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~--~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAK--HMAPGARLVVRSA 231 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHH--HS-TTSEEEEEE-
T ss_pred CCEEEEhhhcccccchHHHHHHHHHh--hCCCCcEEEEecc
Confidence 99999864111 1256778888864 6899999988754
No 263
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0054 Score=60.03 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcchHHHHHHH---cCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHH--hhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS---RGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERA--EQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas---~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~--~~~~ 226 (317)
.++.+|||+||-.|+-++.++. ... ..|++-|.++..+ ...+.-+....-. .+.+.+.|+..+.... ...+
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc-ceeeecccceeccccccccCch
Confidence 4689999999999988865443 332 2699999999998 7777766555432 3555555554432211 0001
Q ss_pred CCCCCccEEEECCCCCCc-c--------------------HHHHHHHHH-HcCCcCCCeEEEEEe
Q 021116 227 GKDGPFDYMSVTPPYTAV-D--------------------YEVLMAQIS-KSALVGKDSFIVVEY 269 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~-~--------------------~~~~l~~L~-~~~lLkpgG~ivv~~ 269 (317)
.....||-|++|-|.... . ..-++..+. ..++|++||.+|-++
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 123579999999998632 0 011223333 247899999987553
No 264
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.012 Score=53.46 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGC--SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga--~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~ 229 (317)
.++.+|+||||-.|+.+-.+++... ..|++||+.|-.. .. + +.++++|+.+- +..+.. ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~--------~-V~~iq~d~~~~~~~~~l~~-~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IP--------G-VIFLQGDITDEDTLEKLLE-ALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CC--------C-ceEEeeeccCccHHHHHHH-HcCC
Confidence 4689999999999999988776532 2499999999654 11 1 56777776432 111110 0122
Q ss_pred CCccEEEECCCCCC-c----cHHHHH---HHH--HHcCCcCCCeEEEEEeCCCCCc
Q 021116 230 GPFDYMSVTPPYTA-V----DYEVLM---AQI--SKSALVGKDSFIVVEYPLRTDM 275 (317)
Q Consensus 230 ~~fDlV~~dPPy~~-~----~~~~~l---~~L--~~~~lLkpgG~ivv~~~~~~~l 275 (317)
..+|+|++|+--.. + +....+ ... .+...|+++|.+++-.-.....
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 34799999974322 2 111111 111 1235899999999876655443
No 265
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.70 E-value=0.0037 Score=63.87 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH---cC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS---RG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas---~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
|...+.+.+..++... .-++..+.|++||||.+-+++.. .| ...+++.|.++.+. ..++.|+...+...
T Consensus 199 Tp~~Iv~l~~~~~~~~-----~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 199 TPQDISELLARIAIGK-----KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDY 272 (501)
T ss_pred CcHHHHHHHHHHhccC-----CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCc
Confidence 4455565555555432 01457899999999999887543 12 24699999999998 99999987766532
Q ss_pred -ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 207 -VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 207 -~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
...+..+|-..-.... ....||.|++||||+.
T Consensus 273 ~t~~~~~~dtl~~~d~~-----~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 273 ANFNIINADTLTTKEWE-----NENGFEVVVSNPPYSI 305 (501)
T ss_pred cccCcccCCcCCCcccc-----ccccCCEEeecCCccc
Confidence 2333344432210000 1246999999999964
No 266
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.62 E-value=0.0084 Score=56.73 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=37.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTG 203 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~g 203 (317)
....+||=+|||.|.++.|.+.+|. .|.+.|.|-.|+ .--|.-.|+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~ 100 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH 100 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence 3468999999999999999999998 599999999997 334444443
No 267
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.53 E-value=0.011 Score=54.70 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=75.6
Q ss_pred ecce-EEecCCCCC--CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHH---H-cCCCEEEEEeCCH
Q 021116 116 ARRK-KLLSPKGMD--VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAI---S-RGCSEVHFVEMDP 188 (317)
Q Consensus 116 ~~G~-~l~~p~~~~--~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaa---s-~Ga~~V~aVDin~ 188 (317)
+.+. ....|.+.- .-|...-....+.+.|....+- .+.++.+.||+| +|+-.|.-+ . .|- +-++-|+|+
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~-~~~~~i~~LDIG--vGAnCIYPliG~~eYgw-rfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ-IPGKNIRILDIG--VGANCIYPLIGVHEYGW-RFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC-CCcCceEEEeec--cCcccccccccceeecc-eeecCccCH
Confidence 3344 366676652 2333333455666777653211 123567899995 555555422 1 233 588999999
Q ss_pred HHHHHHHHHhHHHh-CCCCceEEEEe-cHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 189 WVVSNVLIPNLEWT-GFLDVSSIHTV-RVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 189 ~al~~~ar~N~~~~-gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
.++ +.|+.|+..| +++..+++... |-...+... -+..+.||.+++||||+.
T Consensus 113 ~sl-~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi---ig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 113 QSL-SSAKAIISANPGLERAIRLRRQKDSDAIFNGI---IGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHH-HHHHHHHHcCcchhhheeEEeccCcccccccc---ccccceeeeEecCCCcch
Confidence 999 9999999998 88777777553 333233221 234578999999999974
No 268
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.39 E-value=0.0098 Score=56.23 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcc----hHHHHHHHcC------CCEEEEEeCCHHHHHHHHHHhHHH--
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTG----SVGIEAISRG------CSEVHFVEMDPWVVSNVLIPNLEW-- 201 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG----~l~Ieaas~G------a~~V~aVDin~~al~~~ar~N~~~-- 201 (317)
+.++..+...|.... ....-+|+-.||+|| ++++.+...+ .-+|+|.|+|..++ +.|+.-.=.
T Consensus 79 ~~l~~~v~p~l~~~~----~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~G~Y~~~ 153 (268)
T COG1352 79 EELRDEVLPELVKRK----KGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARAGIYPSR 153 (268)
T ss_pred HHHHHHHHHHHHhhc----cCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhcCCCChh
Confidence 445555554443221 013569999999999 5666554432 23799999999999 888753211
Q ss_pred ---hCCC-----------------------CceEEEEecHHHHHHHHhhhcCCCCCccEEEEC-CC-CC-CccHHHHHHH
Q 021116 202 ---TGFL-----------------------DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT-PP-YT-AVDYEVLMAQ 252 (317)
Q Consensus 202 ---~gl~-----------------------~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d-PP-y~-~~~~~~~l~~ 252 (317)
-++. +.|+|-+.|+.+-.. ..+.||+||+= -- |. ...-.++++.
T Consensus 154 ~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~ 226 (268)
T COG1352 154 ELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRR 226 (268)
T ss_pred HhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHH
Confidence 1111 123333333322110 23569999983 21 11 1123555666
Q ss_pred HHHcCCcCCCeEEEEEeCC
Q 021116 253 ISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 253 L~~~~lLkpgG~ivv~~~~ 271 (317)
+. ..|+|||++++-++.
T Consensus 227 f~--~~L~~gG~LflG~sE 243 (268)
T COG1352 227 FA--DSLKPGGLLFLGHSE 243 (268)
T ss_pred HH--HHhCCCCEEEEccCc
Confidence 65 379999999998763
No 269
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.28 E-value=0.052 Score=50.81 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=74.8
Q ss_pred EEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 160 LDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 160 LDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
|+.+|||=-++-.++ |...++.++|..|.-. ...+.|+.. +.++++.++|-+..+... +|. .+.=-+|++||
T Consensus 93 l~~YpGSP~lA~~ll-R~qDRl~l~ELHp~D~-~~L~~~f~~---d~~vrv~~~DG~~~l~a~--LPP-~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLL-REQDRLVLTELHPSDA-PLLRNNFAG---DRRVRVLRGDGFLALKAH--LPP-KERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHc-chhceeeeeecCccHH-HHHHHHhCC---CcceEEEecCcHHHHhhh--CCC-CCcceEEEeCC
Confidence 899999988876554 5567899999999998 899988862 356999999987766443 222 23347999999
Q ss_pred CCCC-ccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 240 PYTA-VDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 240 Py~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||.. .+|..+.+.+.+.-.=-++|+..+-++.
T Consensus 165 PfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 165 PFELKDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred CcccccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 9975 4788888877642111346666666653
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.27 E-value=0.017 Score=52.60 Aligned_cols=110 Identities=14% Similarity=-0.018 Sum_probs=56.7
Q ss_pred CCCeEEEECCCcchHHHHHHH----c-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhc--C
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS----R-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFV--G 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas----~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~--~ 227 (317)
+.+.++++|.-.|.-.+..++ . +..+|++||++.... .+.-++...+.++|++++||..+...-. +.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~-~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVD-QVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHH-TSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHH-HHHHhh
Confidence 568999999999988876543 2 346899999987654 2334444555678999999876432211 110 1
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
......+|+.|--.........++... +++++|++++++..
T Consensus 108 ~~~~~vlVilDs~H~~~hvl~eL~~y~--plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 108 SPPHPVLVILDSSHTHEHVLAELEAYA--PLVSPGSYLIVEDT 148 (206)
T ss_dssp ---SSEEEEESS----SSHHHHHHHHH--HT--TT-EEEETSH
T ss_pred ccCCceEEEECCCccHHHHHHHHHHhC--ccCCCCCEEEEEec
Confidence 124567999996433333344444443 58999999999754
No 271
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.19 E-value=0.035 Score=51.18 Aligned_cols=127 Identities=12% Similarity=0.015 Sum_probs=71.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCC
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLD 206 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~ 206 (317)
..|-.+.++.++++-+.... ..+|.+||-||+.+|+.--.... -| -+.|++||.+++.. +.+- +++.-. .
T Consensus 51 W~P~RSKLaAai~~Gl~~~~----ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~-~la~~R--~ 122 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIP----IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLL-NLAKKR--P 122 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S------TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHH-HHHHHS--T
T ss_pred cCchhhHHHHHHHcCccccC----CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHH-HHhccC--C
Confidence 35667788888876665321 13688999999999977655443 13 34699999999887 4443 333222 3
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++--+-+|+..-..... --+..|+||.|-.- ..+.+-++. .....|++||.+++...
T Consensus 123 NIiPIl~DAr~P~~Y~~----lv~~VDvI~~DVaQ-p~Qa~I~~~--Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRM----LVEMVDVIFQDVAQ-PDQARIAAL--NARHFLKPGGHLIISIK 179 (229)
T ss_dssp TEEEEES-TTSGGGGTT----TS--EEEEEEE-SS-TTHHHHHHH--HHHHHEEEEEEEEEEEE
T ss_pred ceeeeeccCCChHHhhc----ccccccEEEecCCC-hHHHHHHHH--HHHhhccCCcEEEEEEe
Confidence 46667788875432211 12579999999631 112221111 12247999999987753
No 272
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.16 E-value=0.019 Score=54.22 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
|.+......+++-+.... .+....+|||+|||+|+....+.. ....++++||.++.++ ++++.=++
T Consensus 12 p~~YA~~~~vl~El~~r~---p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~ 79 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRL---PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLR 79 (274)
T ss_pred hHHHHHHHHHHHHHHHhC---cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHh
Confidence 334444555555554431 124678999999999987664433 2456899999999998 88876444
No 273
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.15 E-value=0.026 Score=53.59 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 153 SLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 153 ~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
++.|+.|+=+| ---..+++++- .-+.+|..||+|+..+ +...+-++..|+.| ++.+.-|+.+.+..-. ..+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~-----~~k 221 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGYNN-IEAFVFDLRNPLPEDL-----KRK 221 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCccc-hhheeehhcccChHHH-----Hhh
Confidence 36788899887 44466676443 3467899999999998 99999999999954 8889899887765432 378
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
||+.+.|||+..
T Consensus 222 FDvfiTDPpeTi 233 (354)
T COG1568 222 FDVFITDPPETI 233 (354)
T ss_pred CCeeecCchhhH
Confidence 999999999853
No 274
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.11 E-value=0.027 Score=54.31 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=62.3
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHH
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR-GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~-Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~ 216 (317)
..+.+.|.. .++..++|.=-|.|.-+.+.++. +..+|+++|.|+.++ +.++++++.+ .+++.+++++..
T Consensus 10 ~Evl~~L~~-------~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 10 KEVLEALNP-------KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHT---------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCTCCC--CTTEEEEES-GG
T ss_pred HHHHHhhCc-------CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHHhhc--cceEEEEeccHH
Confidence 344455654 46789999999999999888864 336899999999999 9998887754 578999998877
Q ss_pred HHHHHHhhhcCCCCCccEEEECC
Q 021116 217 TFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 217 ~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
++...+... ..-..+|.|++|.
T Consensus 80 ~l~~~l~~~-~~~~~~dgiL~DL 101 (310)
T PF01795_consen 80 NLDEYLKEL-NGINKVDGILFDL 101 (310)
T ss_dssp GHHHHHHHT-TTTS-EEEEEEE-
T ss_pred HHHHHHHHc-cCCCccCEEEEcc
Confidence 665554322 1235799999974
No 275
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.011 Score=52.08 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCC--CceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFL--DVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~--~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..+.+||++|.|- |..|+..+ +.....|..-|-|++++ +..++-...|-.. .++.+++.+......+. ..
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-----eq 101 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-----EQ 101 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhcccccccceehhhHHHHhhhHHHH-----hh
Confidence 4678999998874 44444433 34456799999999998 7776644444111 22333333333222222 23
Q ss_pred CCccEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 230 GPFDYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 230 ~~fDlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
..||+|++ |--|.....+.+.+.+. .+|+|.|.-++..+.+-+
T Consensus 102 ~tFDiIlaADClFfdE~h~sLvdtIk--~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 102 HTFDIILAADCLFFDEHHESLVDTIK--SLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred CcccEEEeccchhHHHHHHHHHHHHH--HHhCcccceeEecCcccc
Confidence 58999996 54443333455666665 489999998888776643
No 276
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.05 E-value=0.0042 Score=56.68 Aligned_cols=117 Identities=7% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.....|.|+|||-+.++- +...+. +|+..|.-... + .++.+|+.+. |..+++.|
T Consensus 71 ~~~~viaD~GCGdA~la~-~~~~~~-~V~SfDLva~n---------------~--~Vtacdia~v-------PL~~~svD 124 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAK-AVPNKH-KVHSFDLVAPN---------------P--RVTACDIANV-------PLEDESVD 124 (219)
T ss_dssp -TTS-EEEES-TT-HHHH-H--S----EEEEESS-SS---------------T--TEEES-TTS--------S--TT-EE
T ss_pred CCCEEEEECCCchHHHHH-hcccCc-eEEEeeccCCC---------------C--CEEEecCccC-------cCCCCcee
Confidence 346799999999999984 334333 59998875421 1 1466777543 34568999
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCC--Ccc-----ccCCCeEEEEEeecCceEEEEEe
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRT--DML-----DTCGCLVKIKDRRFGRTHLAIYG 299 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~--~l~-----~~~~~~~~~~~r~yG~~~l~~~~ 299 (317)
+++..-.-...++.+.+... .|+|++||.+++.+..+. .+. ...-||.......- .+.+.+|.
T Consensus 125 v~VfcLSLMGTn~~~fi~EA--~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~-n~~F~~f~ 194 (219)
T PF05148_consen 125 VAVFCLSLMGTNWPDFIREA--NRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES-NKHFVLFE 194 (219)
T ss_dssp EEEEES---SS-HHHHHHHH--HHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---STTEEEEE
T ss_pred EEEEEhhhhCCCcHHHHHHH--HheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC-CCeEEEEE
Confidence 99987543333566655543 379999999988765331 111 01357877654332 34444443
No 277
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.97 E-value=0.032 Score=53.94 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=69.2
Q ss_pred EEecCCCCC--CCCChHHHHHHHHHHHhhcCCCCCCCCCCe--EEEECCCcchHHHHHHH----cCCCEEEEEeCCHHHH
Q 021116 120 KLLSPKGMD--VRPMMEVVKGAAFDILQSAGGCPASLRPGR--WLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVV 191 (317)
Q Consensus 120 ~l~~p~~~~--~rpt~~~v~~alf~~L~~~~~~~~~~~~~r--VLDlgcGtG~l~Ieaas----~Ga~~V~aVDin~~al 191 (317)
.+.+|.+.- +-|........+-+.|..+.+ -++.. =+|+ |||+..|+.+- .+. .-.+.|++...+
T Consensus 67 ~veiP~grLcPtVPnR~nYihwI~DLLss~q~----~k~~i~~GiDI--gtgasci~~llg~rq~n~-~f~~teidd~s~ 139 (419)
T KOG2912|consen 67 SVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQS----DKSTIRRGIDI--GTGASCIYPLLGARQNNW-YFLATEIDDMSF 139 (419)
T ss_pred eEecCccccCCCCccchhhHHHHHHHhhcccC----CCcceeeeeec--cCchhhhHHhhhchhccc-eeeeeecccccc
Confidence 445555542 223333344455566655321 12222 4788 56677776542 122 478999999999
Q ss_pred HHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCCCCccEEEECCCCCC
Q 021116 192 SNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 192 ~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
..|+.|+..|++.+.+.+++....+. +..... ......||++.+||||..
T Consensus 140 -~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~-~~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 140 -NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALK-EESEIIYDFCMCNPPFFE 190 (419)
T ss_pred -chhhccccccccccceeeEEecchhhcchhhhc-cCccceeeEEecCCchhh
Confidence 99999999999998888887643222 111100 011235999999999864
No 278
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.89 E-value=0.021 Score=52.06 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhC-------CCCceEEEEecHHHHHHHHhhhcC
Q 021116 156 PGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTG-------FLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~g-------l~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
...+.|+|||-|.+.++++-.- -.-+.+.||.-... +..++.++.++ +. ++.+++.++..++..+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVs-dYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f---- 134 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVS-DYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFF---- 134 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHH-HHHHHHHHHHhccccccccc-cceeeeccchhhccchh----
Confidence 3568999999999999876543 34599999999886 99988888775 43 37788888887776543
Q ss_pred CCCCc--cEE-EECCCCCCcc-----H-HHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 228 KDGPF--DYM-SVTPPYTAVD-----Y-EVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 228 ~~~~f--DlV-~~dPPy~~~~-----~-~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
..+.. +.. |-||-|.... . ..++.... -+|++||.+|..+..
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eya--y~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYA--YVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHH--hhhhcCceEEEEeeH
Confidence 12222 222 2366443211 1 22233222 478999999987653
No 279
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.72 E-value=0.029 Score=59.09 Aligned_cols=161 Identities=13% Similarity=-0.027 Sum_probs=92.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCC---CC-CCCCCCeEEEECCCcchHHHHHHH-------cC------CCEEEEEeC
Q 021116 124 PKGMDVRPMMEVVKGAAFDILQSAGG---CP-ASLRPGRWLDLYSGTGSVGIEAIS-------RG------CSEVHFVEM 186 (317)
Q Consensus 124 p~~~~~rpt~~~v~~alf~~L~~~~~---~~-~~~~~~rVLDlgcGtG~l~Ieaas-------~G------a~~V~aVDi 186 (317)
..+..++.+..-+.|+..-.+..... .. .....-+|+|+|=|+|...+.++. .+ .-+++.+|.
T Consensus 22 ~f~d~y~s~~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 22 QFDDVYFSNDNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred cCCCcccCCCCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 34444455555566665544332100 00 012346899999999987765441 11 137999998
Q ss_pred CHHHHHHHHHH-h-------------HHH-----hCC------CC--ceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 187 DPWVVSNVLIP-N-------------LEW-----TGF------LD--VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 187 n~~al~~~ar~-N-------------~~~-----~gl------~~--~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
.|-.. +..++ + ++. .|+ .+ .++++.||+.+.+..+. ..||++|+|+
T Consensus 102 ~p~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~------~~~d~~~lD~ 174 (662)
T PRK01747 102 FPLTR-ADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLD------ARADAWFLDG 174 (662)
T ss_pred CCCCH-HHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhcc------ccccEEEeCC
Confidence 66322 11111 1 110 122 12 35678899999887652 5699999996
Q ss_pred --CCCCcc--HHHHHHHHHHcCCcCCCeEEEEEeCCCCC-ccccCCCeEEEEEeecCce
Q 021116 240 --PYTAVD--YEVLMAQISKSALVGKDSFIVVEYPLRTD-MLDTCGCLVKIKDRRFGRT 293 (317)
Q Consensus 240 --Py~~~~--~~~~l~~L~~~~lLkpgG~ivv~~~~~~~-l~~~~~~~~~~~~r~yG~~ 293 (317)
|..... -++++..|. +++++||++...+....- -.....||.+.+...||..
T Consensus 175 FsP~~np~~W~~~~~~~l~--~~~~~~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~k 231 (662)
T PRK01747 175 FAPAKNPDMWSPNLFNALA--RLARPGATLATFTSAGFVRRGLQEAGFTVRKVKGFGRK 231 (662)
T ss_pred CCCccChhhccHHHHHHHH--HHhCCCCEEEEeehHHHHHHHHHHcCCeeeecCCCchh
Confidence 322221 267777776 488999999876543311 1112588988877778753
No 280
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.61 E-value=0.033 Score=52.06 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
...+|+|+|||.--+++...... ...++|+|+|...+ +....=+...+.. .++...|...-. .....|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~--~~~~v~Dl~~~~--------~~~~~D 173 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP--HDARVRDLLSDP--------PKEPAD 173 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C--EEEEEE-TTTSH--------TTSEES
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC--cceeEeeeeccC--------CCCCcc
Confidence 36899999999999998765432 24799999999998 9999888888875 455556754432 235689
Q ss_pred EEEE
Q 021116 234 YMSV 237 (317)
Q Consensus 234 lV~~ 237 (317)
+.++
T Consensus 174 laLl 177 (251)
T PF07091_consen 174 LALL 177 (251)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 8887
No 281
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.47 E-value=0.17 Score=48.56 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRG--CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV 213 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~G--a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g 213 (317)
+...+.+.|.. .++...+|.=-|-|.-+-..++.. ..+++++|.|+.++ +.|++.+..++ ++++++++
T Consensus 11 Ll~E~i~~L~~-------~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~~~~--~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAP-------KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLKEFD--GRVTLVHG 80 (314)
T ss_pred HHHHHHHhccc-------CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhhccC--CcEEEEeC
Confidence 34445555654 467899999999999998888764 35799999999999 99999887765 67999999
Q ss_pred cHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 214 RVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 214 D~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
...++...+..+ .-+.+|-|++|-
T Consensus 81 ~F~~l~~~l~~~--~i~~vDGiL~DL 104 (314)
T COG0275 81 NFANLAEALKEL--GIGKVDGILLDL 104 (314)
T ss_pred cHHHHHHHHHhc--CCCceeEEEEec
Confidence 877766554311 135789999863
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.27 E-value=0.034 Score=56.60 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=67.4
Q ss_pred ceEEecCCCCCCCC-ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEE---eCCHHHHHH
Q 021116 118 RKKLLSPKGMDVRP-MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFV---EMDPWVVSN 193 (317)
Q Consensus 118 G~~l~~p~~~~~rp-t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aV---Din~~al~~ 193 (317)
|-++..|.|....+ ..+...+.+-+.+.... ....-..+||+|||+|++|..+++++.. +..+ |..+..+ +
T Consensus 82 gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~---~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qv-q 156 (506)
T PF03141_consen 82 GDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK---WGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQV-Q 156 (506)
T ss_pred CCEEEeCCCCccccCCHHHHHHHHHHHhhccc---cCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhh-h
Confidence 55666665543222 22333334444443210 0012247899999999999999999863 2222 2222233 3
Q ss_pred HHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEEC---CCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 194 VLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVT---PPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 194 ~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~d---PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.|-+ -|+..-+.++ + ...+|..+..||+|=+. -|+...+ -+-.+.-.|+|+|||+++.+.+
T Consensus 157 fale----RGvpa~~~~~-~--------s~rLPfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 157 FALE----RGVPAMIGVL-G--------SQRLPFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhh----cCcchhhhhh-c--------cccccCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCC
Confidence 3321 2443211111 0 01245567889988542 1222111 1111111379999999999877
Q ss_pred CC
Q 021116 271 LR 272 (317)
Q Consensus 271 ~~ 272 (317)
..
T Consensus 221 pv 222 (506)
T PF03141_consen 221 PV 222 (506)
T ss_pred cc
Confidence 53
No 283
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.09 E-value=0.058 Score=53.17 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.++..++|++||.|....+....+...+++++.|+.-+ ..+..-....++.++..++.+|+.+ .+..+..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~-~~~~~~~~~~~l~~k~~~~~~~~~~-------~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEA-FRANELAKKAYLDNKCNFVVADFGK-------MPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHH-HHHHHHHHHHHhhhhcceehhhhhc-------CCCCccccC
Confidence 34668999999999999887765545699999999876 5555544455666666665555443 234567899
Q ss_pred EEE-ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 234 YMS-VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 234 lV~-~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
.+- +|---+.++....++.+. +.++|||+.++...
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~--rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIY--RVLKPGGLFIVKEW 216 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHh--cccCCCceEEeHHH
Confidence 886 454333445666666664 67999999988754
No 284
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.03 E-value=0.11 Score=48.78 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCC---------------------------
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLD--------------------------- 206 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~--------------------------- 206 (317)
.++.++||+|||.-..-+..+..-+.+++..|..+... +.+++-++.-+.-|
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46889999999996665545556678899999999998 87777665432201
Q ss_pred ce-EEEEecHHHHHHHHhhhc-C-CCCCccEEEECCC--C---CCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 207 VS-SIHTVRVETFLERAEQFV-G-KDGPFDYMSVTPP--Y---TAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 207 ~v-~ii~gD~~~~l~~~~~~~-~-~~~~fDlV~~dPP--y---~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
.| .++.+|+.+...-. + . -.++||+|++--- . ....|...++.+. ++|+|||.+++..-..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~---~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~--~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLD---PPVVLPPKFDCVISSFCLESACKDLDEYRRALRNIS--SLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTT---TS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHH--TTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCC---ccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHH--HHcCCCcEEEEEEEcC
Confidence 01 23444443221000 0 0 0124898887310 0 0013555565554 6999999999876543
No 285
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.02 E-value=0.076 Score=51.77 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=67.7
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYM 235 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV 235 (317)
-...+|+|.|+|.+.-..++ -..+|-+++.+...+ -.++.++. .| |+.+.+|.++-. ++-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v-~~~a~~~~-~g----V~~v~gdmfq~~----------P~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFV-LAAAPYLA-PG----VEHVAGDMFQDT----------PKGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHH-Hhhhhhhc-CC----cceecccccccC----------CCcCeE
Confidence 37899999999999988888 456799999999988 66777765 55 455778876532 566899
Q ss_pred EECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeC
Q 021116 236 SVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYP 270 (317)
Q Consensus 236 ~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~ 270 (317)
++----+...-++..+.|.. ..-|+|||.|++..+
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 98522111122444444431 246899988877665
No 286
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.49 Score=43.24 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=77.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc
Q 021116 129 VRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV 207 (317)
Q Consensus 129 ~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~ 207 (317)
..|-.+.++.++.+-|.... -.++.+||=||+-+|+..-.... .|...+++||.+++...++. .-++. .++
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~p----i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl-~~a~~---R~N 125 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFP----IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL-DVAEK---RPN 125 (231)
T ss_pred eCcchhHHHHHHHcCcccCC----cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH-HHHHh---CCC
Confidence 56777888888887776421 14689999999999987655443 24446999999999873333 22222 233
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+--+-+|+..-..... -=+..|+|+.|- ...+-.+++.. .+...|+++|.+++.-
T Consensus 126 i~PIL~DA~~P~~Y~~----~Ve~VDviy~DV--AQp~Qa~I~~~-Na~~FLk~~G~~~i~i 180 (231)
T COG1889 126 IIPILEDARKPEKYRH----LVEKVDVIYQDV--AQPNQAEILAD-NAEFFLKKGGYVVIAI 180 (231)
T ss_pred ceeeecccCCcHHhhh----hcccccEEEEec--CCchHHHHHHH-HHHHhcccCCeEEEEE
Confidence 5566788865432221 125689999995 22222222211 1235799999766653
No 287
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.44 E-value=0.064 Score=50.66 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=57.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
....|.|+|||-+-++. +. ...|+..|+-+.. -+++.+|+.+. |..+++.|+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~-----------------~~V~~cDm~~v-------Pl~d~svDv 231 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVN-----------------ERVIACDMRNV-------PLEDESVDV 231 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeecCC-----------------CceeeccccCC-------cCccCcccE
Confidence 46789999999988775 32 2348887764311 13566777653 345789999
Q ss_pred EEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 235 MSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 235 V~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
++..-.....++.+.+... .|+|++||.+|+..-.
T Consensus 232 aV~CLSLMgtn~~df~kEa--~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 232 AVFCLSLMGTNLADFIKEA--NRILKPGGLLYIAEVK 266 (325)
T ss_pred EEeeHhhhcccHHHHHHHH--HHHhccCceEEEEehh
Confidence 9987533223444444443 4799999999987653
No 288
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.80 E-value=0.25 Score=43.30 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.+.+|+=+||=|-...+........+++..|.|.+-. .... + .++.-|...-..-... -.++||+
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~-~~~~-~----------~F~fyD~~~p~~~~~~---l~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE-QFGG-D----------EFVFYDYNEPEELPEE---LKGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH-hcCC-c----------ceEECCCCChhhhhhh---cCCCceE
Confidence 4689999988886666644122345799999999764 3211 1 1222222211110000 1368999
Q ss_pred EEECCCCCCcc-HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 235 MSVTPPYTAVD-YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 235 V~~dPPy~~~~-~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
|++||||.... ..+....+. -++++++.+++.+.
T Consensus 90 vv~DPPFl~~ec~~k~a~ti~--~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 90 VVIDPPFLSEECLTKTAETIR--LLLKPGGKIILCTG 124 (162)
T ss_pred EEECCCCCCHHHHHHHHHHHH--HHhCccceEEEecH
Confidence 99999994321 222222222 24577788877665
No 289
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.62 E-value=0.35 Score=45.10 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
..+..|||.|+|+|+.++.+...|- +.+++|++++-+ +.+.+-+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~-~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYV-EVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHH-HHHHHHHHhh
Confidence 5789999999999999998777764 699999999998 8887766543
No 290
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=0.15 Score=52.30 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchHHHHH---HH---cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 156 PGRWLDLYSGTGSVGIEA---IS---RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea---as---~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
-.+++=+|+|-|-+.-.. ++ +.. ++++||.||.|+ - .-+|.+.-..+++|+++.+|+..|.. +.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAi-v-tL~~~n~~~W~~~Vtii~~DMR~w~a-------p~ 437 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAI-V-TLQNRNFECWDNRVTIISSDMRKWNA-------PR 437 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchh-h-hhhhhchhhhcCeeEEEeccccccCC-------ch
Confidence 456788899999886543 22 323 699999999998 3 33455444566889999999999852 12
Q ss_pred CCccEEEECC--CCCCc-cHHHHHHHHHHcCCcCCCeEEEE
Q 021116 230 GPFDYMSVTP--PYTAV-DYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 230 ~~fDlV~~dP--Py~~~-~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
++.|+++..- .|+-. .-.+.++-+. +.|+|+|+.+-
T Consensus 438 eq~DI~VSELLGSFGDNELSPECLDG~q--~fLkpdgIsIP 476 (649)
T KOG0822|consen 438 EQADIIVSELLGSFGDNELSPECLDGAQ--KFLKPDGISIP 476 (649)
T ss_pred hhccchHHHhhccccCccCCHHHHHHHH--hhcCCCceEcc
Confidence 6789988642 22221 3467787765 48999988663
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.72 E-value=1.2 Score=43.73 Aligned_cols=95 Identities=13% Similarity=-0.005 Sum_probs=60.6
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++++|+=.|+| .|.+++..++ .| .+|+++|.+++.. +.|+ .+|.+ .++...-.+..+.. .+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~-e~a~----~lGAd---~~i~~~~~~~~~~~------~~~ 229 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKL-ELAK----KLGAD---HVINSSDSDALEAV------KEI 229 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHH-HHHH----HhCCc---EEEEcCCchhhHHh------Hhh
Confidence 468888888776 4466676666 67 5899999999998 8876 45543 23442222233322 134
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
||+|+.--| . ..++..++ .|+++|.+++.-..
T Consensus 230 ~d~ii~tv~-~-~~~~~~l~------~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-P-ATLEPSLK------ALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-h-hhHHHHHH------HHhcCCEEEEECCC
Confidence 999998654 2 23344443 57899999877655
No 292
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.66 E-value=0.34 Score=45.12 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred CCeEEEECCCcchHHHHHHHc--------CCC--EEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH------HH
Q 021116 156 PGRWLDLYSGTGSVGIEAISR--------GCS--EVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET------FL 219 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~--------Ga~--~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~------~l 219 (317)
-+|++|||+..|+.+-.+.++ +.. .+++||+.+.+= ++. +.-+++|+.. ++
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP------------I~G-V~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP------------IEG-VIQLQGDITSASTAEAII 108 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc------------cCc-eEEeecccCCHhHHHHHH
Confidence 368999999999998755421 121 399999988542 122 4456677543 33
Q ss_pred HHHhhhcCCCCCccEEEECC-CCCCc--cHHHH------HHHHH-HcCCcCCCeEEEEE
Q 021116 220 ERAEQFVGKDGPFDYMSVTP-PYTAV--DYEVL------MAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 220 ~~~~~~~~~~~~fDlV~~dP-Py~~~--~~~~~------l~~L~-~~~lLkpgG~ivv~ 268 (317)
..+ .+++.|+|++|. |-..+ ++.+. +..|. ...+|++||.++.-
T Consensus 109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 333 346899999985 32222 22222 22232 35789999999854
No 293
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.62 E-value=0.17 Score=44.59 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce-EEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS-SIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v-~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+++++=+|+..=.+-+.|+..|+++|..||.|+--+ + .+. .+++ ++...|...-.... .++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i-~--~~~------~dr~ssi~p~df~~~~~~y------~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEI-Q--EEF------RDRLSSILPVDFAKNWQKY------AGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeeccccc-C--ccc------ccccccccHHHHHHHHHHh------hccchh
Confidence 567888888877777778889999999999998544 2 111 1221 23333433222222 367887
Q ss_pred EEE-------------CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEE
Q 021116 235 MSV-------------TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLA 296 (317)
Q Consensus 235 V~~-------------dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~ 296 (317)
+.+ ||--..++..+ +..+. ++||+||.+++..+...+-. .| -.+|.||..++.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~-m~~i~--~vLK~GG~L~l~vPvG~d~i----~f--NahRiYg~~rL~ 132 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRA-MAKIK--CVLKPGGLLFLGVPVGTDAI----QF--NAHRIYGPIRLA 132 (177)
T ss_pred hheechhccccccccCCCCCccccHHH-HHHHH--HhhccCCeEEEEeecCCcce----EE--ecceeecHhHHH
Confidence 665 22100112222 22332 58999999999998765422 12 245778766554
No 294
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=92.35 E-value=0.14 Score=54.63 Aligned_cols=46 Identities=35% Similarity=0.518 Sum_probs=40.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEW 201 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~ 201 (317)
..+..++|.|+|-|++.+|+++.|+ .|++||.||.+. -..++-++.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAy-lfLKavlEy 134 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAY-LFLKAVLEY 134 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHH-HHHHHHHhc
Confidence 3577899999999999999999997 599999999997 778777664
No 295
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=92.13 E-value=0.19 Score=42.11 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC---cc--HHHHHHHHHHcCCcCCCeEEEEEeCCCCCc--cccCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA---VD--YEVLMAQISKSALVGKDSFIVVEYPLRTDM--LDTCG 280 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~---~~--~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l--~~~~~ 280 (317)
++++.+|+.+.+..+ ...||+|++|+ |.. .. -.++++.|. +++++||++...+... .+ .....
T Consensus 33 L~L~~gDa~~~l~~l------~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~--~~~~~~~~l~Tys~a~-~Vr~~L~~a 102 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL------DARFDAWYLDG-FSPAKNPELWSEELFKKLA--RLSKPGGTLATYSSAG-AVRRALQQA 102 (124)
T ss_dssp EEEEES-HHHHHHHB-------T-EEEEEE-S-S-TTTSGGGSSHHHHHHHH--HHEEEEEEEEES--BH-HHHHHHHHC
T ss_pred EEEEEcHHHHHHHhC------cccCCEEEecC-CCCcCCcccCCHHHHHHHH--HHhCCCcEEEEeechH-HHHHHHHHc
Confidence 567889999998876 37899999997 332 11 267787776 3789999887754432 22 11358
Q ss_pred CeEEEEEeecCc
Q 021116 281 CLVKIKDRRFGR 292 (317)
Q Consensus 281 ~~~~~~~r~yG~ 292 (317)
||.+.+...||.
T Consensus 103 GF~v~~~~g~g~ 114 (124)
T PF05430_consen 103 GFEVEKVPGFGR 114 (124)
T ss_dssp TEEEEEEE-STT
T ss_pred CCEEEEcCCCCC
Confidence 999988888875
No 296
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.70 E-value=0.13 Score=45.45 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred ccEEEECCCCCCc-c------------HHHHHHHH----H-HcCCcCCCeEEEEEeCCCC
Q 021116 232 FDYMSVTPPYTAV-D------------YEVLMAQI----S-KSALVGKDSFIVVEYPLRT 273 (317)
Q Consensus 232 fDlV~~dPPy~~~-~------------~~~~l~~L----~-~~~lLkpgG~ivv~~~~~~ 273 (317)
.|+|+.||||... . .++.++.+ . ..++|+|+|.+++.+....
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh
Confidence 4899999999743 2 22222222 1 2479999999999887553
No 297
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.65 E-value=0.49 Score=48.16 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 156 PGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
+..+|=+|=|.|.++... .+.+..++++||++|.++ +.|+.+.....- ++..++..|..+++....+.-..+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 466777888888887643 345656899999999999 999988765432 24556777888887766533234567999
Q ss_pred EEECC--CCCCcc--------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 235 MSVTP--PYTAVD--------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 235 V~~dP--Py~~~~--------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
++.|- +-..+. ....+.... ..|.|.|.+++.-..+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k--~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVK--MILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHh--hccCccceEEEEEecC
Confidence 99852 112111 123333333 5799999998875544
No 298
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.49 E-value=0.15 Score=48.54 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al 191 (317)
..+++|||+|||+|.-++.+...|...+++.|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 57899999999999999998888877899999999876
No 299
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.11 E-value=2.2 Score=41.58 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCCCeEEEECCCc-chHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-c-HHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAI-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-R-VETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D-~~~~l~~~~~~~~~~ 229 (317)
..+.+||=+|||. |.+++..+ ..|+.+|+.+|.++..+ +.|++ +|.+. +..... + ..++.....+..+ .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~----~Ga~~-~~~~~~~~~~~~~~~~v~~~~g-~ 240 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK----FGATV-TDPSSHKSSPQELAELVEKALG-K 240 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH----hCCeE-EeeccccccHHHHHHHHHhhcc-c
Confidence 4689999998885 44444444 46999999999999999 99876 67642 222211 1 2222222221111 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..||+.|-.- -.+..++... .-++.+|.+++.-
T Consensus 241 ~~~d~~~dCs-----G~~~~~~aai--~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS-----GAEVTIRAAI--KATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc-----CchHHHHHHH--HHhccCCEEEEec
Confidence 3488888542 1233333322 1478899966544
No 300
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.61 E-value=0.25 Score=45.17 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
...+++|+|||+|++++.+... ..+|+.-|+++..+ ...+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~-~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLI-NFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHH-HHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHH-HHHH
Confidence 4789999999999999876554 45799999999765 5544
No 301
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.56 E-value=1.1 Score=45.76 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
++|-+|||.--+....-..|...|+.+|+++-++......|+... ....+...|+.... .++++||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~-------fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLV-------FEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhcc-------CCCcceeEEEe
Confidence 899999999999888878888889999999999833334454322 23678888876542 35788999886
Q ss_pred CCCCCC--cc----H--HHHHHHHH-HcCCcCCCeEEEEE
Q 021116 238 TPPYTA--VD----Y--EVLMAQIS-KSALVGKDSFIVVE 268 (317)
Q Consensus 238 dPPy~~--~~----~--~~~l~~L~-~~~lLkpgG~ivv~ 268 (317)
=+-... .+ + ...-..+. .+++++++|+.+..
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 321110 01 1 11112222 25789999986543
No 302
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=89.86 E-value=0.095 Score=48.08 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar 196 (317)
.+.++||+|+|-|-++...+ .-..+|++-|.+..|. ...+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr-~rL~ 151 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMR-DRLK 151 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHH-HHHh
Confidence 46899999999999997543 3356799999999886 5543
No 303
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.84 E-value=0.85 Score=45.00 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCce
Q 021116 131 PMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVS 208 (317)
Q Consensus 131 pt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v 208 (317)
|.++.-..+..+-|+... .+....++||+|.|.|+...++-.- --..++.+|.|+.. ...-..++++-...+.
T Consensus 92 p~~Yasv~asL~~L~~~~---~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~l--rkV~~tl~~nv~t~~t 166 (484)
T COG5459 92 PQTYASVRASLDELQKRV---PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPAL--RKVGDTLAENVSTEKT 166 (484)
T ss_pred hHHHHHHHHHHHHHHHhC---CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHH--HHHHHHHHhhcccccC
Confidence 444444444445554431 2356788999999998766533221 23457888988854 3334445444332222
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEE-CC--CCC-CccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSV-TP--PYT-AVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~-dP--Py~-~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..-..|+..-...+ ...+.|++|++ |- |-. ...+...++.+.+ ++.|||.+|+...
T Consensus 167 d~r~s~vt~dRl~l----p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~--l~~~gg~lVivEr 226 (484)
T COG5459 167 DWRASDVTEDRLSL----PAADLYTLAIVLDELLPDGNEKPIQVNIERLWN--LLAPGGHLVIVER 226 (484)
T ss_pred CCCCCccchhccCC----CccceeehhhhhhhhccccCcchHHHHHHHHHH--hccCCCeEEEEeC
Confidence 23334433221111 12356787775 21 111 1122334555443 7899999888765
No 304
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.16 E-value=4.1 Score=39.59 Aligned_cols=100 Identities=16% Similarity=0.061 Sum_probs=56.3
Q ss_pred CCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCCCC
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKDGP 231 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~~~ 231 (317)
.+.+|+=+|||. |.+++.+++ .|+.+|+++|.++..+ +.|++- .+. +.+..... +......... ....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~---~g~-~~~~~~~~~~~~~~~~~~t----~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEA---GGA-DVVVNPSEDDAGAEILELT----GGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHh---CCC-eEeecCccccHHHHHHHHh----CCCC
Confidence 344899998775 444444443 6888999999999999 888762 221 11111111 2222222221 1236
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|++|--- +. ...++... ..++++|.+++.--
T Consensus 239 ~D~vie~~----G~-~~~~~~ai--~~~r~gG~v~~vGv 270 (350)
T COG1063 239 ADVVIEAV----GS-PPALDQAL--EALRPGGTVVVVGV 270 (350)
T ss_pred CCEEEECC----CC-HHHHHHHH--HHhcCCCEEEEEec
Confidence 99999642 22 22333332 26899999876543
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.14 E-value=0.97 Score=36.55 Aligned_cols=88 Identities=14% Similarity=0.048 Sum_probs=55.5
Q ss_pred CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 165 GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 165 GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
|.|.+++.+++ .| .+|+++|.++... +.+++ +|.. .++.. |..+.+.... ....+|+||-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~-~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKL-ELAKE----LGAD---HVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHH-HHHHH----TTES---EEEETTTSSHHHHHHHHT----TTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHH-HHHHh----hccc---cccccccccccccccccc----ccccceEEEEecC
Confidence 56888887665 57 6899999999987 88764 4532 23332 3444444432 1247999987642
Q ss_pred CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 241 YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 241 y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
. ...++.... .++++|.+++.-...
T Consensus 68 ----~-~~~~~~~~~--~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----S-GDTLQEAIK--LLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----S-HHHHHHHHH--HEEEEEEEEEESSTS
T ss_pred ----c-HHHHHHHHH--HhccCCEEEEEEccC
Confidence 1 233333322 689999999876654
No 306
>PRK10904 DNA adenine methylase; Provisional
Probab=88.93 E-value=0.95 Score=42.64 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=42.1
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC------------c--c---HHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA------------V--D---YEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~------------~--~---~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
++++.+.|..+.+... +.=|+|++||||.. . . ..++.+.+.. +...++.++++.
T Consensus 157 ~v~i~~~Df~~~i~~~-------~~~~fvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~La~~l~~--l~~~~~k~ilS~ 227 (271)
T PRK10904 157 NAFFYCESYADSMARA-------DKGSVVYCDPPYAPLSATANFTAYHTNSFSLEQQAHLAEIAEG--LVERHIPVLISN 227 (271)
T ss_pred CCEEEECCHHHHHhhc-------CCCcEEEECCCCCCCCCCCCCcCcccCCCCHHHHHHHHHHHHH--HHhCCCEEEEEe
Confidence 3789999999987642 34589999999931 0 1 2233333332 224577888887
Q ss_pred CCCCCccccCCCeEE
Q 021116 270 PLRTDMLDTCGCLVK 284 (317)
Q Consensus 270 ~~~~~l~~~~~~~~~ 284 (317)
.....+.++..+|.+
T Consensus 228 ~d~~~i~elY~~~~i 242 (271)
T PRK10904 228 HDTMLTREWYQRAKL 242 (271)
T ss_pred CCCHHHHHHHcCCcE
Confidence 755444444445544
No 307
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.89 E-value=3.5 Score=39.81 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=75.7
Q ss_pred CCCeEEEECCCcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHH--hCCC-CceEEEEecHHHHHHHHhhhcCCCC
Q 021116 155 RPGRWLDLYSGTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEW--TGFL-DVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~--~gl~-~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..++||=+|-|-|.+--+-+. .-...+..+|++...+ +..++=+.. .|++ .++.++-||...+++... .+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----EN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cC
Confidence 468899999999988876543 3345799999999988 888775443 3565 468899999999987762 47
Q ss_pred CccEEEECCCCCCcc----H-HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 231 PFDYMSVTPPYTAVD----Y-EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~----~-~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+||+|+.|----.+. + +.....+. +.|+++|++++...
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~--~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVL--DALKGDGVVCTQGE 237 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHH--HhhCCCcEEEEecc
Confidence 899999863111111 1 23333343 36899999987653
No 308
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.35 E-value=2.3 Score=40.94 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCcc---hHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH---HHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTG---SVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF---LERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG---~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~---l~~~~~~~~ 227 (317)
..++.||==|+|+| .++.|++++|+ ++...|+|++.. +...++++.+| ++..+..|+.+. .....+...
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~-~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGN-EETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccch-HHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 56899999999998 46778899998 699999999998 77778777776 466777776433 222222333
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
+-+..|+++-|.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 446889999874
No 309
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=88.09 E-value=1 Score=42.32 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=40.2
Q ss_pred ceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC------------c-----cHHHHHHHHHHcCCcC-CCeEEEEE
Q 021116 207 VSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA------------V-----DYEVLMAQISKSALVG-KDSFIVVE 268 (317)
Q Consensus 207 ~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~------------~-----~~~~~l~~L~~~~lLk-pgG~ivv~ 268 (317)
++++.++|..+.+... ..=|+|++||||.. . +..++.+.|.+ ++ .++.++++
T Consensus 155 ~v~i~~~Df~~~i~~~-------~~~dfvYlDPPY~~~~~~~~f~~y~~~~f~~~dh~~L~~~l~~---l~~~~~~~~lS 224 (266)
T TIGR00571 155 NTTFLCGSFEKILAMV-------DDDSFVYCDPPYLPLSATYNFTGYHTNGFDEDEQKRLANFCKS---LDERGIKFLLS 224 (266)
T ss_pred CCEEEECCHHHHHhhc-------CCCCEEEECCCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHH---HHhCCCEEEEE
Confidence 3788899998887542 34579999999931 0 12344444432 33 46677777
Q ss_pred eCCCCCccccCCCeEE
Q 021116 269 YPLRTDMLDTCGCLVK 284 (317)
Q Consensus 269 ~~~~~~l~~~~~~~~~ 284 (317)
......+.+.-.+|.+
T Consensus 225 ~~~~~~i~ely~~~~~ 240 (266)
T TIGR00571 225 NSDSSFTRELYQGFNV 240 (266)
T ss_pred eCCCHHHHHHhcCCeE
Confidence 7643333333345543
No 310
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.97 E-value=1.2 Score=37.20 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=30.5
Q ss_pred EECCCcc--hHHHHHH--HcC-CCEEEEEeCCHHHHHHHHHHh--HHHhCCCCceEEE
Q 021116 161 DLYSGTG--SVGIEAI--SRG-CSEVHFVEMDPWVVSNVLIPN--LEWTGFLDVSSIH 211 (317)
Q Consensus 161 DlgcGtG--~l~Ieaa--s~G-a~~V~aVDin~~al~~~ar~N--~~~~gl~~~v~ii 211 (317)
|+||+.| ...+..+ ..+ ..+|+++|.+|..+ +.++.| +..++..+.++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~~~~~~~~ 57 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDKDGEVEFH 57 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTTSTTGGEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCCCceEEEE
Confidence 8999999 5555443 232 35799999999998 999999 6666433223333
No 311
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.40 E-value=2.9 Score=41.76 Aligned_cols=109 Identities=14% Similarity=-0.023 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhHHH-------hCC-CCceEEEEecHHHHH--HHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEA-ISRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGF-LDVSSIHTVRVETFL--ERA 222 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea-as~Ga~~V~aVDin~~al~~~ar~N~~~-------~gl-~~~v~ii~gD~~~~l--~~~ 222 (317)
.+++...|||+|.|.+.... +..++..-+|+|+..... ++|..|.+. +|- .+.++.++++..+-- ...
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS-~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPS-QCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcH-HHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 46789999999999888764 445677788999877764 777766554 344 345778888764322 111
Q ss_pred hhhcCCCCCccEEEECCC-CCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 223 EQFVGKDGPFDYMSVTPP-YTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPP-y~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
....++||+|-- |......++-+.|. -+++|.+|+-..+..
T Consensus 270 ------~~eatvi~vNN~~Fdp~L~lr~~eil~---~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 270 ------QTEATVIFVNNVAFDPELKLRSKEILQ---KCKDGTRIISSKPLV 311 (419)
T ss_pred ------hhcceEEEEecccCCHHHHHhhHHHHh---hCCCcceEecccccc
Confidence 246789998632 11111111122222 478888888766543
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.33 E-value=6.3 Score=37.81 Aligned_cols=98 Identities=13% Similarity=-0.035 Sum_probs=53.8
Q ss_pred CCCCeEEEECCCcchHHHHH---HH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---IS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---as-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||=.|| |.+|..+ ++ .|+.+|+++|.+++.. +.+++ +|.+.-+.....|..+.+.... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL-EWARE----FGATHTVNSSGTDPVEAIRALT----GG 243 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCceEEcCCCcCHHHHHHHHh----CC
Confidence 35788887764 5666543 33 5776799999999887 77753 4542111111223333332221 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||--- +. ...++... ..++++|++++.-
T Consensus 244 ~g~d~vid~~----g~-~~~~~~~~--~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAV----GR-PETYKQAF--YARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECC----CC-HHHHHHHH--HHhccCCEEEEEC
Confidence 3589887321 11 11222222 2579999988654
No 313
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=87.23 E-value=3.5 Score=39.09 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=58.6
Q ss_pred CeEEEECCCcchHH--HHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHh-----hhcC
Q 021116 157 GRWLDLYSGTGSVG--IEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAE-----QFVG 227 (317)
Q Consensus 157 ~rVLDlgcGtG~l~--Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~-----~~~~ 227 (317)
.-+||+|||.=+.+ -|.+. ....+|+-||.||-++ ..++.-+..+.- .+..++++|+.+.-.-+. .+-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 57999999965433 23333 2345899999999998 888776655432 247899999876543322 0000
Q ss_pred CCCCccEEEECC-CCCC--ccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 228 KDGPFDYMSVTP-PYTA--VDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 228 ~~~~fDlV~~dP-Py~~--~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
-+.+.=++++.- .|.. .+...++..+. ..|.+|.++++++.....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~--d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLR--DALAPGSYLAISHATDDG 195 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHH--CCS-TT-EEEEEEEB-TT
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHH--HhCCCCceEEEEecCCCC
Confidence 111222333321 1111 23456677766 489999999999886643
No 314
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.19 E-value=3.6 Score=38.57 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCeEEEECCCcchHHHHHH---H-cC--CCEEEEEeCC--------------------------HHHHHHHHHHhHHHhC
Q 021116 156 PGRWLDLYSGTGSVGIEAI---S-RG--CSEVHFVEMD--------------------------PWVVSNVLIPNLEWTG 203 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaa---s-~G--a~~V~aVDin--------------------------~~al~~~ar~N~~~~g 203 (317)
...+++.||--|..++.++ . .+ ..++++.|.= ...+ +..++|++..|
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~-e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSL-EEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHH-HHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCH-HHHHHHHHHcC
Confidence 4569999999998766432 1 22 3468877631 1245 66788888877
Q ss_pred C-CCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeC
Q 021116 204 F-LDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYP 270 (317)
Q Consensus 204 l-~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~ 270 (317)
+ .++++++.|+..+-+... ..+++-++-+|- ..|+.....|.. .+.|.+||+|++..-
T Consensus 154 l~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~----DlYesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDC----DLYESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC------TT--EEEEEE-------SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccC-----CCccEEEEEEec----cchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 6 467999999987765322 134566666773 346655555532 468999999998653
No 315
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.86 E-value=5.9 Score=37.80 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=53.2
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|| |.+|+.+ + .+|+.+|+++|.+++.+ +.+++ +|...-+..-..|..++.. ..
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~----lGa~~vi~~~~~~~~~~~~-------~~ 233 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLARE----MGADKLVNPQNDDLDHYKA-------EK 233 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHH----cCCcEEecCCcccHHHHhc-------cC
Confidence 35788887765 6676643 2 35777899999999988 77753 4643111111122222211 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+||-.. +. ...++... +.++++|.+++.-
T Consensus 234 g~~D~vid~~----G~-~~~~~~~~--~~l~~~G~iv~~G 266 (343)
T PRK09880 234 GYFDVSFEVS----GH-PSSINTCL--EVTRAKGVMVQVG 266 (343)
T ss_pred CCCCEEEECC----CC-HHHHHHHH--HHhhcCCEEEEEc
Confidence 3589887532 11 11222222 2579999988653
No 316
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.85 E-value=6.5 Score=38.28 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHh
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N 198 (317)
.++.+||..|||+ |.+.+.+++ .|..+|+++|.+++.. +.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc
Confidence 3578999998876 666666555 5665799999999998 888764
No 317
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.78 E-value=1.2 Score=41.99 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHhHHHhCCC
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS----RGCSEVHFVEMDPWVVSNVLIPNLEWTGFL 205 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas----~Ga~~V~aVDin~~al~~~ar~N~~~~gl~ 205 (317)
.|-.+.++.+++.-+.+. ...++.+||=||+++|..--.... .|+ |++||.++++= ..+ -|++.-. .
T Consensus 135 nPfrSKLAA~I~gGvdni----hikpGsKVLYLGAasGttVSHvSDiVGpeG~--VYAVEfs~rsG-RdL-~nmAkkR-t 205 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNI----HIKPGSKVLYLGAASGTTVSHVSDIVGPEGC--VYAVEFSHRSG-RDL-INMAKKR-T 205 (317)
T ss_pred ChHHHHHHHHhhcCccce----eecCCceEEEeeccCCceeehhhcccCCCce--EEEEEecccch-HHH-HHHhhcc-C
Confidence 455555665554333221 113689999999999965433322 344 99999999874 333 3444322 2
Q ss_pred CceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 206 DVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 206 ~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
| +--+..|+..-.+..- .-+-.|+||.|-+- .+...++ +|.+...|+++|-++++..
T Consensus 206 N-iiPIiEDArhP~KYRm----lVgmVDvIFaDvaq--pdq~Riv-aLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 206 N-IIPIIEDARHPAKYRM----LVGMVDVIFADVAQ--PDQARIV-ALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred C-ceeeeccCCCchheee----eeeeEEEEeccCCC--chhhhhh-hhhhhhhhccCCeEEEEEe
Confidence 3 4445567664322110 01468999999642 1222222 2334568999999988754
No 318
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.94 E-value=1.2 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al 191 (317)
..-++|=+|||.|.++.+++..|.. +-+-|.+--|+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Ml 185 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFML 185 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHH
Confidence 4678999999999999999998874 77778777776
No 319
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.27 E-value=1.2 Score=44.20 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=61.7
Q ss_pred CCCCeEEEECCCcchHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS--RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas--~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+|+|.||-.|.-++.++. ....++++.|.+...+ +..+.-+...|... ++...+|.... ... ..-..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~-~tl~~~l~~ag~~~-~~~~~~df~~t-~~~----~~~~~ 284 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRA-ATLRKLLKIAGVSI-VESVEGDFLNT-ATP----EKFRD 284 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHH-HHHHHHHHHcCCCc-cccccccccCC-CCc----ccccc
Confidence 4679999999999988886543 3345799999999998 99999998888754 66667776543 111 11245
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
...|++||+...
T Consensus 285 v~~iL~DpscSg 296 (413)
T KOG2360|consen 285 VTYILVDPSCSG 296 (413)
T ss_pred eeEEEeCCCCCC
Confidence 678999999753
No 320
>COG4889 Predicted helicase [General function prediction only]
Probab=82.90 E-value=5.9 Score=43.58 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH---------cC-CCEEEEEeCCHHHHHHHHHHhHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS---------RG-CSEVHFVEMDPWVVSNVLIPNLEW 201 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas---------~G-a~~V~aVDin~~al~~~ar~N~~~ 201 (317)
-++..|||.|+|||++-..+++ +. ..+.++.|+---+. -.|.-|++.
T Consensus 844 d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsY-YIAaiNIe~ 900 (1518)
T COG4889 844 DQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSY-YIAAINIEQ 900 (1518)
T ss_pred cCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHH-HHHHhhHHH
Confidence 4678999999999999765543 21 23567777766665 566667664
No 321
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.78 E-value=12 Score=36.08 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..+++||=.|+ |.+|+.+ + .+|+.+|+++|.+++.+ +.+++ +|...-+.....|..+.+.... .
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~ 257 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKL-ALARE----LGATATVNAGDPNAVEQVRELT-----G 257 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence 35677877765 5666543 3 35776799999999987 77753 4553211111123222222221 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+||-.- +. ...++... +.++++|.+++.-
T Consensus 258 ~g~d~vid~~----G~-~~~~~~~~--~~l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMA----GS-VPALETAY--EITRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECC----CC-hHHHHHHH--HHHhcCCEEEEEc
Confidence 3689888532 11 11222221 2578899887643
No 322
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.36 E-value=17 Score=36.19 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=66.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCc-eEEEEecHHHHHHHHhhhcCCCCCccEEE
Q 021116 158 RWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDV-SSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (317)
Q Consensus 158 rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~-v~ii~gD~~~~l~~~~~~~~~~~~fDlV~ 236 (317)
+|+=++=.-|.+++.++..+. +.+ .|.......+++|++.||+... ++++... +-+ .+.+|+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~~~---------~~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSI-GDSYISELATRENLRLNGIDESSVKFLDST--ADY---------PQQPGVVL 111 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---Cee-ehHHHHHHHHHHHHHHcCCCcccceeeccc--ccc---------cCCCCEEE
Confidence 788899999999997765443 322 3444433567889999998643 4444322 211 25699999
Q ss_pred ECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 237 VTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 237 ~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
+=-|-.....+.++..+. ..|.+|+.|++-...
T Consensus 112 ~~~PK~~~~l~~~l~~l~--~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 112 IKVPKTLALLEQQLRALR--KVVTSDTRIIAGAKA 144 (378)
T ss_pred EEeCCCHHHHHHHHHHHH--hhCCCCCEEEEEEec
Confidence 988876666777777776 489999998765543
No 323
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=80.39 E-value=1.8 Score=40.69 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=47.8
Q ss_pred CCeEEEECCCcchHH--HHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 156 PGRWLDLYSGTGSVG--IEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~--Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.-+||++++|.|.+- ++.+.-.+.-|-++|+|+.|- +.-..|- +-++.....+-.-.+.++. .-++|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvAN-evY~~N~-h~~L~k~~~I~~lt~kefd---------~l~~~ 71 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVAN-EVYAHNY-HSNLVKTRNIQSLTVKEFD---------KLQAN 71 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHH-HHHhcCc-ccchhhccccceeeHhhhh---------hcccc
Confidence 358999999999874 333444455699999999886 7766662 2222111112222333332 24689
Q ss_pred EEEECCCCC
Q 021116 234 YMSVTPPYT 242 (317)
Q Consensus 234 lV~~dPPy~ 242 (317)
.+.+.||..
T Consensus 72 m~lMSPpCQ 80 (338)
T KOG0919|consen 72 MLLMSPPCQ 80 (338)
T ss_pred eEeeCCCCC
Confidence 999999975
No 324
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.24 E-value=9.6 Score=34.56 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCc-chHHHH-HHHcCCCEEEEEeCC-------------------H
Q 021116 130 RPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMD-------------------P 188 (317)
Q Consensus 130 rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGt-G~l~Ie-aas~Ga~~V~aVDin-------------------~ 188 (317)
+|....+.+.++.......+ ..+...+|+=+|||. |+-... ++..|..+++.+|.| +
T Consensus 4 ~~~~~~~~~~~~~~~g~~~q--~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~ 81 (212)
T PRK08644 4 IPSMEEFEAMLASRHTPKLL--EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMP 81 (212)
T ss_pred cCcHHHHHHHHHhhcCHHHH--HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCCh
Confidence 45555555555544322110 014578899998873 443333 446788899999999 3
Q ss_pred HHHHHHHHHhHHHhCCCCceEEEEecHHHH-HHHHhhhcCCCCCccEEEE
Q 021116 189 WVVSNVLIPNLEWTGFLDVSSIHTVRVETF-LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 189 ~al~~~ar~N~~~~gl~~~v~ii~gD~~~~-l~~~~~~~~~~~~fDlV~~ 237 (317)
++ +.++++++..+-.-+++.+...+... ...+ -..||+||.
T Consensus 82 Ka--~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~------~~~~DvVI~ 123 (212)
T PRK08644 82 KV--EALKENLLEINPFVEIEAHNEKIDEDNIEEL------FKDCDIVVE 123 (212)
T ss_pred HH--HHHHHHHHHHCCCCEEEEEeeecCHHHHHHH------HcCCCEEEE
Confidence 33 56667776655443455555443321 1111 146999984
No 325
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=79.87 E-value=3.1 Score=37.80 Aligned_cols=122 Identities=15% Similarity=-0.006 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-c
Q 021116 138 GAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR--GCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-R 214 (317)
Q Consensus 138 ~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~--Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D 214 (317)
++.|..++.......-.++.+|||+||..|+.+--|.++ ..+.|.+||+-.-.- .+. ++++++ |
T Consensus 52 RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p------------~~G-a~~i~~~d 118 (232)
T KOG4589|consen 52 RSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP------------PEG-ATIIQGND 118 (232)
T ss_pred hhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC------------CCC-cccccccc
Confidence 345555544322222356899999999999999877654 234699999865221 111 234444 4
Q ss_pred HHHHH---HHHhhhcCCCCCccEEEECCCCC-Cc----cHHHHHHHH-----HHcCCcCCCeEEEEEeCCCCC
Q 021116 215 VETFL---ERAEQFVGKDGPFDYMSVTPPYT-AV----DYEVLMAQI-----SKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 215 ~~~~l---~~~~~~~~~~~~fDlV~~dPPy~-~~----~~~~~l~~L-----~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+.+-. +-++.+ .+...|+|+.|.--+ .+ +....++.. .+-..+.|+|.+++-.-....
T Consensus 119 vtdp~~~~ki~e~l--p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 119 VTDPETYRKIFEAL--PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cCCHHHHHHHHHhC--CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 43321 112222 346789999996322 22 222233222 123467899999987654443
No 326
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.86 E-value=17 Score=33.82 Aligned_cols=98 Identities=15% Similarity=0.031 Sum_probs=52.9
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..+.+||..+|| .|...+++++ .|+ +|++++.+++.. +.+++ .|....+.....+..+.+... ....
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~~~ 232 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKL-ELAKE----LGADEVLNSLDDSPKDKKAAG-----LGGG 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHH----hCCCEEEcCCCcCHHHHHHHh-----cCCC
Confidence 357788887665 3555555555 565 599999999887 66643 454221111111222222111 2356
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+|+|+-.- .. ...++... +.|+++|.++...
T Consensus 233 ~D~vid~~--g~---~~~~~~~~--~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFV--GT---QPTFEDAQ--KAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECC--CC---HHHHHHHH--HHhhcCCEEEEEC
Confidence 99877531 11 12233322 3678999988653
No 327
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.80 E-value=11 Score=36.87 Aligned_cols=77 Identities=16% Similarity=0.044 Sum_probs=46.7
Q ss_pred CCCCeEEEECCCc-chHHHH-HHHcCCCEEEEEeCCH---------------------HHHHHHHHHhHHHhCCCCceEE
Q 021116 154 LRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMDP---------------------WVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ie-aas~Ga~~V~aVDin~---------------------~al~~~ar~N~~~~gl~~~v~i 210 (317)
+.+.+||=+|||. |+.... ++..|..+++.||.|. .-+ +.+++.++..+-.-+++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka-~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKA-IAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHH-HHHHHHHHHHCCCcEEEE
Confidence 4578999998873 333333 4457888999999984 122 456666666554334556
Q ss_pred EEecHH-HHHHHHhhhcCCCCCccEEEE
Q 021116 211 HTVRVE-TFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 211 i~gD~~-~~l~~~~~~~~~~~~fDlV~~ 237 (317)
+..|+. +.+..+ -..+|+|+.
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid 122 (338)
T PRK12475 101 VVTDVTVEELEEL------VKEVDLIID 122 (338)
T ss_pred EeccCCHHHHHHH------hcCCCEEEE
Confidence 655543 112222 156898886
No 328
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.74 E-value=12 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMD 187 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin 187 (317)
+.+.+|+=+||| .|+..+. ++..|..+++.+|.|
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457889999887 3443333 445788899999988
No 329
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=78.18 E-value=1.7 Score=38.03 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=26.1
Q ss_pred ccEEEECCCCCCcc----------H----HHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 232 FDYMSVTPPYTAVD----------Y----EVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 232 fDlV~~dPPy~~~~----------~----~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
||+|++|||+.... | .+.+..|--..++.++|++++-....
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~tm~~~~i~~Lpv~~l~~~~~~lflWvTn~ 55 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPTMSLDEIKSLPVPQLAAPGALLFLWVTNS 55 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCccCHHHHHhCCHHHhCCCCcEEEEEeccc
Confidence 89999999975321 1 22333332235788898988776544
No 330
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=78.08 E-value=28 Score=26.52 Aligned_cols=80 Identities=23% Similarity=0.174 Sum_probs=52.6
Q ss_pred EEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcC
Q 021116 181 VHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVG 260 (317)
Q Consensus 181 V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLk 260 (317)
|.-||-++... +..+.-++..|+. .+ ....+..+.+.... ...||+|++|--.......++++.+... .
T Consensus 1 Ilivd~~~~~~-~~l~~~l~~~~~~-~v-~~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~---~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIR-ELLEKLLERAGYE-EV-TTASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQI---N 69 (112)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTEE-EE-EEESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHH---T
T ss_pred cEEEECCHHHH-HHHHHHHHhCCCC-EE-EEECCHHHHHHHhc-----ccCceEEEEEeeeccccccccccccccc---c
Confidence 46789999997 8888888877762 13 34466666665553 3569999998433334566778877642 3
Q ss_pred CCeEEEEEeCC
Q 021116 261 KDSFIVVEYPL 271 (317)
Q Consensus 261 pgG~ivv~~~~ 271 (317)
++..+++-...
T Consensus 70 ~~~~ii~~t~~ 80 (112)
T PF00072_consen 70 PSIPIIVVTDE 80 (112)
T ss_dssp TTSEEEEEESS
T ss_pred ccccEEEecCC
Confidence 56666555543
No 331
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.88 E-value=7.7 Score=38.59 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=34.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
.++++||-| |+.|--.+..+..+.++|++||+||.-. .+++--++
T Consensus 34 ~~~d~vl~I-tSaG~N~L~yL~~~P~~I~aVDlNp~Q~-aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTI-TSAGCNALDYLLAGPKRIHAVDLNPAQN-ALLELKLA 78 (380)
T ss_pred CCCCeEEEE-ccCCchHHHHHhcCCceEEEEeCCHHHH-HHHHHHHH
Confidence 468899999 5566677777888888999999999876 66654433
No 332
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.73 E-value=4.2 Score=37.94 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
..+.-|.++|-|.|.++-..+..|+.+...||+|+.-+ .-.+.-.+.. ..+..++.+|+..+
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFi-p~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFI-PGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccC-hHHHHHhhcC--CcceEEecccccee
Confidence 56789999999999999988888988999999999876 6554443322 23577888888654
No 333
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.66 E-value=27 Score=32.75 Aligned_cols=97 Identities=8% Similarity=0.012 Sum_probs=54.8
Q ss_pred eEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh--------CCC---------CceEEEEecHHHH
Q 021116 158 RWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWT--------GFL---------DVSSIHTVRVETF 218 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~--------gl~---------~~v~ii~gD~~~~ 218 (317)
+|.=+|+|+=..++. ++..|. +|+.+|.+++.+ +.++++++.. ++. ++++ ...|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH
Confidence 466667665444443 233454 699999999998 8877664321 110 1222 23444332
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+ ..-|+||..-|........+++.+.. .++++.+|....
T Consensus 82 ~----------~~aDlVieavpe~~~~k~~~~~~l~~--~~~~~~ii~snt 120 (287)
T PRK08293 82 V----------KDADLVIEAVPEDPEIKGDFYEELAK--VAPEKTIFATNS 120 (287)
T ss_pred h----------cCCCEEEEeccCCHHHHHHHHHHHHh--hCCCCCEEEECc
Confidence 2 45699998876432233455665543 567777664433
No 334
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=76.46 E-value=3.3 Score=39.90 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCc------cH---HHH--HHHHHHcCCcCCCeEEEEEeCCC
Q 021116 204 FLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAV------DY---EVL--MAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 204 l~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~------~~---~~~--l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++.+|+.||+.+....+. ....-+|+||+|||+... .| ..+ +..+--...+.|.|++.+-|..+
T Consensus 160 IPpkSsF~~gDv~~~~qll~---~H~llpdlIIiDPPW~NKSVkRs~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTNr 236 (366)
T KOG2356|consen 160 IPPKSSFHVGDVKDIEQLLR---AHDLLPDLIIIDPPWFNKSVKRSRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTNR 236 (366)
T ss_pred eCCccceecccHHHHHHHhH---HHhhcCCeEEeCCCCCCcccccccceecccchhhhhcCCchhhcCCCceEEEEEcCc
Confidence 35677899999887654331 223457999999998532 11 222 22221123678999998888766
Q ss_pred C
Q 021116 273 T 273 (317)
Q Consensus 273 ~ 273 (317)
+
T Consensus 237 q 237 (366)
T KOG2356|consen 237 Q 237 (366)
T ss_pred H
Confidence 3
No 335
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=76.16 E-value=6.4 Score=34.46 Aligned_cols=107 Identities=19% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCcchHHHH--HHH-cC-CCEEEEE--eCCHHHHHHH---HHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccE
Q 021116 164 SGTGSVGIE--AIS-RG-CSEVHFV--EMDPWVVSNV---LIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDY 234 (317)
Q Consensus 164 cGtG~l~Ie--aas-~G-a~~V~aV--Din~~al~~~---ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDl 234 (317)
.|-|.++.. ++. .+ ...+++- |...+.. +. +..|++.+.-.+-...+..|+.+..... ......||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~-~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~---~~~~~~FDr 78 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELL-QKYPDAEENLEELRELGVTVLHGVDATKLHKHF---RLKNQRFDR 78 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHH-HhcccHHHHHHHHhhcCCccccCCCCCcccccc---cccCCcCCE
Confidence 456655553 333 24 4455554 4444333 22 3467766532221234456776654332 123578999
Q ss_pred EEECCCCCCc-------c---HHHHHHHHH--HcCCcCCCeEEEEEeCCCCC
Q 021116 235 MSVTPPYTAV-------D---YEVLMAQIS--KSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 235 V~~dPPy~~~-------~---~~~~l~~L~--~~~lLkpgG~ivv~~~~~~~ 274 (317)
|+.|=|.... . -.+++..+. +..+|+++|.|.+.......
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 9999886531 1 123443332 35789999999998876655
No 336
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.02 E-value=24 Score=27.82 Aligned_cols=91 Identities=22% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCcchHHHHHH---HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCCCCccEEEEC
Q 021116 164 SGTGSVGIEAI---SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 164 cGtG~l~Ieaa---s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~~~fDlV~~d 238 (317)
||.|.+|...+ ..+...|+.+|.|++.+ +.+++. | +.++.||..+. +... .-...|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~-~~~~~~----~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERV-EELREE----G----VEVIYGDATDPEVLERA-----GIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHT----T----SEEEES-TTSHHHHHHT-----TGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHH-HHHHhc----c----cccccccchhhhHHhhc-----CccccCEEEEc
Confidence 78888887654 34444799999999987 666532 2 45888998754 3222 12578888876
Q ss_pred CCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 239 PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
-+ .+ +.-+......+-+.+...+++.....
T Consensus 70 ~~---~d-~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 70 TD---DD-EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SS---SH-HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred cC---CH-HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 32 12 22222221123467777888776543
No 337
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=75.52 E-value=2.7 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=26.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWV 190 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~a 190 (317)
+...++|+|||.|.+---+.+.|.. =+++|...+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R~Rk 92 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP-GWGIDARRRK 92 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC-cccccccccc
Confidence 3567999999999998767777763 6788876554
No 338
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.07 E-value=36 Score=32.21 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..+.+||=.|| |.+|..+ + ..|+..|++++.+++.. +.++ .+|...-+.....+..+..... ..
T Consensus 159 ~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~----~~Ga~~~i~~~~~~~~~~~~~~-----~~ 226 (347)
T PRK10309 159 CEGKNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAK----SLGAMQTFNSREMSAPQIQSVL-----RE 226 (347)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHH----HcCCceEecCcccCHHHHHHHh-----cC
Confidence 35778888865 5566543 2 35776689999999887 7664 3454211111112222222111 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|.+++|. .+. ...+.... +.++++|.+++.-
T Consensus 227 ~~~d~~v~d~---~G~-~~~~~~~~--~~l~~~G~iv~~G 260 (347)
T PRK10309 227 LRFDQLILET---AGV-PQTVELAI--EIAGPRAQLALVG 260 (347)
T ss_pred CCCCeEEEEC---CCC-HHHHHHHH--HHhhcCCEEEEEc
Confidence 4588666663 122 22333322 2679999988753
No 339
>PRK07063 short chain dehydrogenase; Provisional
Probab=74.87 E-value=33 Score=30.86 Aligned_cols=83 Identities=12% Similarity=0.034 Sum_probs=50.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+. |.+|.+ +++.|+ +|+.++.+++.+ +.+.+.++..+...++.++..|+.+... ...+..
T Consensus 5 l~~k~vlVtGas-~gIG~~~a~~l~~~G~-~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 5 LAGKVALVTGAA-QGIGAAIARAFAREGA-AVALADLDAALA-ERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 357788888865 455543 345676 699999999887 6666555542223357788888754321 111111
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|.+|.+.
T Consensus 82 ~~~g~id~li~~a 94 (260)
T PRK07063 82 EAFGPLDVLVNNA 94 (260)
T ss_pred HHhCCCcEEEECC
Confidence 1125689999865
No 340
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.85 E-value=42 Score=29.69 Aligned_cols=99 Identities=18% Similarity=0.055 Sum_probs=54.2
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+||..|+|+ |...+.+++ .| .+|++++.+++.. +.++. .|....+.....+....+. . .....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~-~~~~~----~g~~~~~~~~~~~~~~~~~-~----~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKL-ELAKE----LGADHVIDYKEEDLEEELR-L----TGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHH-HHHHH----hCCceeccCCcCCHHHHHH-H----hcCCC
Confidence 4678999999885 444444444 45 5799999998886 66643 3332111111112221111 1 12357
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|+++..-+ .. ..+..+. +.++++|.++....
T Consensus 202 ~d~vi~~~~----~~-~~~~~~~--~~l~~~G~~v~~~~ 233 (271)
T cd05188 202 ADVVIDAVG----GP-ETLAQAL--RLLRPGGRIVVVGG 233 (271)
T ss_pred CCEEEECCC----CH-HHHHHHH--HhcccCCEEEEEcc
Confidence 999996532 11 1222222 25788898876543
No 341
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.36 E-value=33 Score=32.41 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..+++++=.|++ |.+|.+. ++.|+ +|+.+..+.+.. +.+.+.+....-..++.++..|+.+... ....+.
T Consensus 12 l~gk~~lITGas-~GIG~~~a~~La~~G~-~Vil~~R~~~~~-~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 12 LSGKRAVVTGAS-DGLGLGLARRLAAAGA-EVILPVRNRAKG-EAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cCCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 356778877764 4555543 45675 799999998876 6665555433212347788888754321 111111
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
...+..|++|.+.
T Consensus 89 ~~~~~iD~li~nA 101 (313)
T PRK05854 89 AEGRPIHLLINNA 101 (313)
T ss_pred HhCCCccEEEECC
Confidence 1235689999765
No 342
>PTZ00357 methyltransferase; Provisional
Probab=74.07 E-value=5.1 Score=42.96 Aligned_cols=102 Identities=14% Similarity=0.013 Sum_probs=58.8
Q ss_pred CeEEEECCCcchHHHH---HHH-cCC-CEEEEEeCCHHHHHHHHHHhHHHh-CC-------CCceEEEEecHHHHHHHHh
Q 021116 157 GRWLDLYSGTGSVGIE---AIS-RGC-SEVHFVEMDPWVVSNVLIPNLEWT-GF-------LDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie---aas-~Ga-~~V~aVDin~~al~~~ar~N~~~~-gl-------~~~v~ii~gD~~~~l~~~~ 223 (317)
..|+=+|||=|-+--. |++ .|. -+|++||.|+.++ ...+.+.... .. .++|+++..|+.+|.....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA-~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAA-AFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchH-HHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 3588999999977543 333 243 2799999997764 4554443221 12 3469999999999842110
Q ss_pred ----hhcCCCCCccEEEECC--CCCCc-cHHHHHHHHHHcCCcCC
Q 021116 224 ----QFVGKDGPFDYMSVTP--PYTAV-DYEVLMAQISKSALVGK 261 (317)
Q Consensus 224 ----~~~~~~~~fDlV~~dP--Py~~~-~~~~~l~~L~~~~lLkp 261 (317)
..+..-+++|+||.-- .|+-+ .-.+.|+.+. +.|++
T Consensus 781 ~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQ--rfLKd 823 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFH--AQLED 823 (1072)
T ss_pred cccccccccccccceehHhhhcccccccCCHHHHHHHH--Hhhhh
Confidence 0001113689999742 23322 2356666654 24544
No 343
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=73.79 E-value=12 Score=34.54 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH
Q 021116 139 AAFDILQSAGGC-PASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET 217 (317)
Q Consensus 139 alf~~L~~~~~~-~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~ 217 (317)
.++.||.....- ......-++||+||=+....+. ..+.-.|+.||+++.-= + |.+.|..+
T Consensus 34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~~-----------~------I~qqDFm~ 94 (219)
T PF11968_consen 34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQHP-----------G------ILQQDFME 94 (219)
T ss_pred HHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCCC-----------C------ceeecccc
Confidence 455666543211 0011236999999886665543 23444599999998321 1 34455433
Q ss_pred HHHHHhhhc-CCCCCccEEEECCCCCC-ccHHHHHHHHH-HcCCcCCCeE-----EEEEeCCC----CC-c-----c--c
Q 021116 218 FLERAEQFV-GKDGPFDYMSVTPPYTA-VDYEVLMAQIS-KSALVGKDSF-----IVVEYPLR----TD-M-----L--D 277 (317)
Q Consensus 218 ~l~~~~~~~-~~~~~fDlV~~dPPy~~-~~~~~~l~~L~-~~~lLkpgG~-----ivv~~~~~----~~-l-----~--~ 277 (317)
.. +| ...++||+|.+.---+. ++...--+++. ...+|+++|. +++..+.. .. + . .
T Consensus 95 rp-----lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im 169 (219)
T PF11968_consen 95 RP-----LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIM 169 (219)
T ss_pred CC-----CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHH
Confidence 21 00 12478999987432111 12222223332 2358999999 77765421 11 0 0 1
Q ss_pred cCCCeEEEEEeecCceEEEEEeechh
Q 021116 278 TCGCLVKIKDRRFGRTHLAIYGPDWA 303 (317)
Q Consensus 278 ~~~~~~~~~~r~yG~~~l~~~~p~~~ 303 (317)
..-||..++.+.-.+....+|+....
T Consensus 170 ~~LGf~~~~~~~~~Kl~y~l~r~~~~ 195 (219)
T PF11968_consen 170 ESLGFTRVKYKKSKKLAYWLFRKSGK 195 (219)
T ss_pred HhCCcEEEEEEecCeEEEEEEeecCC
Confidence 13578877776655555556655444
No 344
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.72 E-value=47 Score=29.76 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=50.2
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|++. .+|.+ +++.|+ +|+.++.+++.+ +...+.++..+ .++.++..|+.+... ...+..
T Consensus 7 ~~~k~vlVtGas~-gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 7 LHGKRALITGAST-GIGKRVALAYVEAGA-QVAIAARHLDAL-EKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 3578899888654 44443 345676 699999999887 66666665544 346777887654321 011010
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|.++.+.-
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 11257899998754
No 345
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.68 E-value=29 Score=32.48 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=52.4
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh---CCC-------------CceEEEEecHHH
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWT---GFL-------------DVSSIHTVRVET 217 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~---gl~-------------~~v~ii~gD~~~ 217 (317)
+|.=+|+ |.+|.. ++..|. +|+.+|.|++.+ +.+.+++... +.+ ++++ ...|..+
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~~G~-~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 77 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAVSGF-QTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA 77 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHhCCC-cEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH
Confidence 3444554 545443 334565 599999999998 7776543321 110 0122 1233322
Q ss_pred HHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 218 FLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.+ ...|+||..-|-.......++..+. +.++++.++++.+++
T Consensus 78 ~~----------~~aD~Vi~avpe~~~~k~~~~~~l~--~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 AV----------ADADLVIEAVPEKLELKKAVFETAD--AHAPAECYIATNTST 119 (288)
T ss_pred hh----------cCCCEEEEeccCCHHHHHHHHHHHH--hhCCCCcEEEEcCCC
Confidence 22 4579999876633212234455554 357888777666653
No 346
>PLN02740 Alcohol dehydrogenase-like
Probab=73.55 E-value=50 Score=32.04 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.9
Q ss_pred CCCCeEEEECCCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~ 197 (317)
..+++||=.|| |.+|+.++ .+|+.+|+++|.+++.+ +.+++
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKF-EKGKE 241 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHH
Confidence 45788888865 67776532 35776799999999887 77753
No 347
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.51 E-value=71 Score=32.15 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=31.2
Q ss_pred cCCCEEEEEeCCHHHH--HHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 176 RGCSEVHFVEMDPWVV--SNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 176 ~Ga~~V~aVDin~~al--~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
.+..+|..|+.|+... .+.++...+..++. +.. ..+..++...+.. ...+|+|++|-|
T Consensus 249 ~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~----~~~~DlVlIDt~ 308 (424)
T PRK05703 249 YGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ----LRDCDVILIDTA 308 (424)
T ss_pred cCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH----hCCCCEEEEeCC
Confidence 3445799999998532 14455555556653 211 1222222222211 146899999976
No 348
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.42 E-value=22 Score=31.67 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=46.7
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
+++=.| |+|.+|.. +++.|. +|++++.++... +...+++...+ ..+++++++|+.+...-...+..-...+|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERL-ERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHH-HHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 566666 45666664 345665 699999999876 55555554433 23588888887654211000000113579
Q ss_pred EEEECCC
Q 021116 234 YMSVTPP 240 (317)
Q Consensus 234 lV~~dPP 240 (317)
.++.+..
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 9997653
No 349
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=73.12 E-value=20 Score=32.54 Aligned_cols=78 Identities=17% Similarity=0.086 Sum_probs=45.2
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeC-------------------CHHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEM-------------------DPWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDi-------------------n~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+...+|+=+||| .|+-.+. ++..|..+++.+|- ...-+ +.++++++..+-.-+++.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka-~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKA-EAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHH-HHHHHHHHHhCCCCEEEEec
Confidence 356789999887 3433333 44568889999954 33344 56677776665433355555
Q ss_pred ecHHH-HHHHHhhhcCCCCCccEEEEC
Q 021116 213 VRVET-FLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 213 gD~~~-~l~~~~~~~~~~~~fDlV~~d 238 (317)
.++.. .+..+ -..+|+||..
T Consensus 98 ~~i~~~~~~~~------~~~~DvVi~~ 118 (228)
T cd00757 98 ERLDAENAEEL------IAGYDLVLDC 118 (228)
T ss_pred ceeCHHHHHHH------HhCCCEEEEc
Confidence 44411 11111 1468999963
No 350
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=73.00 E-value=41 Score=30.86 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCcchHHHHHH----HcCC-CEEEEEeCCHHHHHHHH-HHhHHHhCCCCceEEEEecHHHHH--HHHhhh
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI----SRGC-SEVHFVEMDPWVVSNVL-IPNLEWTGFLDVSSIHTVRVETFL--ERAEQF 225 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa----s~Ga-~~V~aVDin~~al~~~a-r~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~ 225 (317)
.+...|++.|+--|.-++..+ +.|. .+|+++|+|-..+ +-+ ++ . .++.+++++-.+.. .+...+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~-~p~a~e------~-p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL-DPAARE------V-PDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC-Chhhhc------C-CCeEEEeCCCCCHHHHHHHHHH
Confidence 356789999999998888654 3452 3799999987665 322 22 2 35899998754321 111111
Q ss_pred cCCCCCccEEEECCCCCCccHHHHHHHHHH-cCCcCCCeEEEEEeCCCCCcc
Q 021116 226 VGKDGPFDYMSVTPPYTAVDYEVLMAQISK-SALVGKDSFIVVEYPLRTDML 276 (317)
Q Consensus 226 ~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~-~~lLkpgG~ivv~~~~~~~l~ 276 (317)
....+-=+|++|--. ..+..+..+.. .++|..|.+++++...-++++
T Consensus 140 -~~~y~kIfvilDsdH---s~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 140 -KNEYPKIFVILDSDH---SMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred -hcCCCcEEEEecCCc---hHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 111222355567422 34556665543 378999999999988766665
No 351
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.96 E-value=46 Score=31.20 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCCCeEEEECCC-cchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.++.+||-.|+| .|...+.+++ .|...|++++.++... +.+++ +|....+.....+..+.+.... .+..
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~~ 236 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKE----AGATDIINPKNGDIVEQILELT----GGRG 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHH----hCCcEEEcCCcchHHHHHHHHc----CCCC
Confidence 357888887653 2444444444 5655789998888776 66654 3432111111223333332221 2256
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+++-.- . + ...+.... +.|+++|+++..
T Consensus 237 ~d~vld~~--g-~--~~~~~~~~--~~l~~~G~~v~~ 266 (347)
T cd05278 237 VDCVIEAV--G-F--EETFEQAV--KVVRPGGTIANV 266 (347)
T ss_pred CcEEEEcc--C-C--HHHHHHHH--HHhhcCCEEEEE
Confidence 99887431 1 1 11233222 257888987754
No 352
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=72.95 E-value=16 Score=33.67 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCCeEEEECCC-cchHHHHHH-HcCCCEEEEEeCCH
Q 021116 155 RPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMDP 188 (317)
Q Consensus 155 ~~~rVLDlgcG-tG~l~Ieaa-s~Ga~~V~aVDin~ 188 (317)
.+.+|+=+||| .|+..++++ ..|..+++.+|.|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46789999886 676666654 45888999999764
No 353
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.50 E-value=37 Score=32.32 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCCCeEEEECCCcchHHHH---HHH-cCCCEEEEEeCCHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIE---AIS-RGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie---aas-~Ga~~V~aVDin~~al~~~ar 196 (317)
.++.+||=.|| |.+|.. +++ .|+ +|+++|.+++.+ +.++
T Consensus 165 ~~g~~VlV~G~--G~vG~~a~~~a~~~G~-~vi~~~~~~~~~-~~~~ 207 (349)
T TIGR03201 165 KKGDLVIVIGA--GGVGGYMVQTAKAMGA-AVVAIDIDPEKL-EMMK 207 (349)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCC-eEEEEcCCHHHH-HHHH
Confidence 35789999987 555543 333 566 699999999887 7775
No 354
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=72.49 E-value=18 Score=31.57 Aligned_cols=73 Identities=19% Similarity=0.095 Sum_probs=41.3
Q ss_pred EEEECCC-cchHHHH-HHHcCCCEEEEEeCCH------------------HHHHHHHHHhHHHhCCCCceEEEEecHHHH
Q 021116 159 WLDLYSG-TGSVGIE-AISRGCSEVHFVEMDP------------------WVVSNVLIPNLEWTGFLDVSSIHTVRVETF 218 (317)
Q Consensus 159 VLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~------------------~al~~~ar~N~~~~gl~~~v~ii~gD~~~~ 218 (317)
|+=+||| .|+.-.. ++..|..+++.+|.|. .-. +.+++.++..+-.-+++.+...+...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka-~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKV-EALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHH-HHHHHHHHHHCCCCEEEEEEeecChh
Confidence 5667766 3443333 4467888999999985 223 55666666654433355555443321
Q ss_pred -HHHHhhhcCCCCCccEEEEC
Q 021116 219 -LERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 219 -l~~~~~~~~~~~~fDlV~~d 238 (317)
+..+ -..+|+||.-
T Consensus 81 ~~~~~------l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGL------FGDCDIVVEA 95 (174)
T ss_pred hHHHH------hcCCCEEEEC
Confidence 1111 1569999853
No 355
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.43 E-value=28 Score=32.98 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.2
Q ss_pred CCCCeEEEECCC-cchHHHHHH-HcCCCEEEEEeCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIEAI-SRGCSEVHFVEMD 187 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ieaa-s~Ga~~V~aVDin 187 (317)
+.+.+|+=+||| .|+...+++ ..|..+++.+|.|
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 357789999887 666666655 4587899999987
No 356
>PRK09242 tropinone reductase; Provisional
Probab=72.37 E-value=48 Score=29.71 Aligned_cols=85 Identities=11% Similarity=-0.082 Sum_probs=51.3
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|++. .+|.. +++.|+ +|+.++.+.+.+ +....+++...-..++.++.+|+.+... ......
T Consensus 7 ~~~k~~lItGa~~-gIG~~~a~~l~~~G~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 7 LDGQTALITGASK-GIGLAIAREFLGLGA-DVLIVARDADAL-AQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred cCCCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3577888888744 44443 345676 699999999887 7776666544212357778888754211 011011
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
..-+..|.++.+.-+
T Consensus 84 ~~~g~id~li~~ag~ 98 (257)
T PRK09242 84 DHWDGLHILVNNAGG 98 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 112578999987643
No 357
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.24 E-value=31 Score=31.38 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=48.5
Q ss_pred CCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH--HhhhcCCC
Q 021116 156 PGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER--AEQFVGKD 229 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~--~~~~~~~~ 229 (317)
++++|=.|+ +|.+|.. ++.+|+ +|++++.+++.+ +...+.+...+...+++++.+|+.+...- .......-
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGY-LVIATMRNPEKQ-ENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCC-EEEEEeCCHHHH-HHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 456777764 4455544 345675 699999998876 55555444444445688888887653211 11000112
Q ss_pred CCccEEEECCC
Q 021116 230 GPFDYMSVTPP 240 (317)
Q Consensus 230 ~~fDlV~~dPP 240 (317)
+..|.|+.++-
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 46799998753
No 358
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=71.95 E-value=90 Score=30.00 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
..+.+|.=+|||. +|-. ++..|. .+++.+|++++.+...+.+-.....+..++.+..+|..++
T Consensus 4 ~~~~ki~iiGaG~--vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~---------- 71 (315)
T PRK00066 4 KQHNKVVLVGDGA--VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC---------- 71 (315)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh----------
Confidence 3567899998854 4432 334454 5899999988765233333222222223456665554432
Q ss_pred CCCccEEEE--CCCCCCcc------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 229 DGPFDYMSV--TPPYTAVD------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 229 ~~~fDlV~~--dPPy~~~~------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
...|+|++ ..|...+. +.++.+.+. -..|++++++..++.
T Consensus 72 -~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~---~~~~~~~vivvsNP~ 125 (315)
T PRK00066 72 -KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVM---ASGFDGIFLVASNPV 125 (315)
T ss_pred -CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HhCCCeEEEEccCcH
Confidence 45798886 33443321 122333333 346889988776643
No 359
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=71.74 E-value=7.2 Score=36.23 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=41.9
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc-------------HHH------------HHHHHH-HcCCcCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD-------------YEV------------LMAQIS-KSALVGK 261 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~-------------~~~------------~l~~L~-~~~lLkp 261 (317)
.+++++|+.+.+.... +.++|+|+.||||.... +.. +...+. ..+++++
T Consensus 17 ~~i~~~d~~~~l~~~~-----~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~ 91 (302)
T COG0863 17 SKIYKGDCLEILKSLP-----ENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKP 91 (302)
T ss_pred hheecchHHHHHhhcc-----ccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecC
Confidence 4678999988877653 45899999999997431 111 223333 3589999
Q ss_pred CeEEEEEeCC
Q 021116 262 DSFIVVEYPL 271 (317)
Q Consensus 262 gG~ivv~~~~ 271 (317)
+|.+++....
T Consensus 92 ~~~~~v~~~~ 101 (302)
T COG0863 92 GGSLYVIDPF 101 (302)
T ss_pred CCEEEEECCc
Confidence 9999998875
No 360
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.32 E-value=42 Score=29.95 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=50.8
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+ +|.+|.+ +++.|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+... ...+..
T Consensus 5 l~~k~ilItGa-s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 5 FSGKVALVTGG-AAGIGRATALAFAREGA-KVVVADRDAAGG-EETVALIREAG--GEALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 45788988886 4555554 345665 699999999887 66666665544 347888888754321 111000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|.|+.+.-
T Consensus 80 ~~~g~id~li~~ag 93 (253)
T PRK06172 80 AAYGRLDYAFNNAG 93 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899998653
No 361
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.54 E-value=51 Score=32.63 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=59.7
Q ss_pred HHHHHHhhcCCCCCCCCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---
Q 021116 139 AAFDILQSAGGCPASLRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV--- 213 (317)
Q Consensus 139 alf~~L~~~~~~~~~~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g--- 213 (317)
+++|.+.. .++..|.=+||| .|.-+|. |...|+.++++||+|++.+ ++|+ .+|..+ +++.
T Consensus 176 av~nta~v-------~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~----~fGAT~---~vn~~~~ 240 (366)
T COG1062 176 AVVNTAKV-------EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAK----KFGATH---FVNPKEV 240 (366)
T ss_pred HhhhcccC-------CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHH----hcCCce---eecchhh
Confidence 45555544 467788877664 2333333 3346899999999999998 8886 567643 3332
Q ss_pred -cHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 214 -RVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 214 -D~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+-+.+.... +...|.+|-- .+..+..-+.+. .+..+|..++.
T Consensus 241 ~~vv~~i~~~T-----~gG~d~~~e~----~G~~~~~~~al~---~~~~~G~~v~i 284 (366)
T COG1062 241 DDVVEAIVELT-----DGGADYAFEC----VGNVEVMRQALE---ATHRGGTSVII 284 (366)
T ss_pred hhHHHHHHHhc-----CCCCCEEEEc----cCCHHHHHHHHH---HHhcCCeEEEE
Confidence 4555554443 3356777532 133343333332 34557776654
No 362
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=70.40 E-value=45 Score=31.30 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=51.4
Q ss_pred CeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCcc
Q 021116 157 GRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFD 233 (317)
Q Consensus 157 ~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fD 233 (317)
.+||=.|+ |.|.+++.+++ +|+.+|++++.+++.. +.+++. +|.+..+.....|..+.+.... ...+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCce
Confidence 78877765 44555555444 5765799999998876 666542 4553211111123333333221 24689
Q ss_pred EEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 234 YMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 234 lV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+|+-.- . . .. +.... +.|+++|.++..
T Consensus 227 ~vid~~--g--~-~~-~~~~~--~~l~~~G~iv~~ 253 (345)
T cd08293 227 VYFDNV--G--G-EI-SDTVI--SQMNENSHIILC 253 (345)
T ss_pred EEEECC--C--c-HH-HHHHH--HHhccCCEEEEE
Confidence 887421 1 1 11 22222 258999998864
No 363
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=70.26 E-value=53 Score=27.93 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEECCCcchHHHHH--HHcCCCEEEEEeCCHHHHHHHHHHhHHHhC------CCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 159 WLDLYSGTGSVGIEA--ISRGCSEVHFVEMDPWVVSNVLIPNLEWTG------FLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 159 VLDlgcGtG~l~Iea--as~Ga~~V~aVDin~~al~~~ar~N~~~~g------l~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
|.=+|+|.+..++.+ +..| .+|+....+++.+ +..+++-.... +..++. +..|..+.+ .
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~----------~ 68 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIK-ATTDLEEAL----------E 68 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEE-EESSHHHHH----------T
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCcccc-cccCHHHHh----------C
Confidence 344677776666642 3445 4799999999887 77666543111 112343 356776654 4
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
..|+|++--|-. .+++.++.+. +.++++-.++.
T Consensus 69 ~ad~IiiavPs~--~~~~~~~~l~--~~l~~~~~ii~ 101 (157)
T PF01210_consen 69 DADIIIIAVPSQ--AHREVLEQLA--PYLKKGQIIIS 101 (157)
T ss_dssp T-SEEEE-S-GG--GHHHHHHHHT--TTSHTT-EEEE
T ss_pred cccEEEecccHH--HHHHHHHHHh--hccCCCCEEEE
Confidence 569999876522 4677788775 46666655554
No 364
>PLN02827 Alcohol dehydrogenase-like
Probab=70.20 E-value=59 Score=31.63 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=52.2
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE--ecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT--VRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~--gD~~~~l~~~~~~~~ 227 (317)
..+.+||=.|+ |.+|..+ + .+|+..|+++|.+++.. +.+++ +|...-+.... .+..+.+....
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~-~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 260 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKA-EKAKT----FGVTDFINPNDLSEPIQQVIKRMT---- 260 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence 45788888864 6677653 2 35776799999998887 77643 46532111111 12333333221
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCC-eEEEEE
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKD-SFIVVE 268 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpg-G~ivv~ 268 (317)
.+.+|+||-.- +....+...+. .++++ |++++.
T Consensus 261 -~~g~d~vid~~----G~~~~~~~~l~---~l~~g~G~iv~~ 294 (378)
T PLN02827 261 -GGGADYSFECV----GDTGIATTALQ---SCSDGWGLTVTL 294 (378)
T ss_pred -CCCCCEEEECC----CChHHHHHHHH---hhccCCCEEEEE
Confidence 23689887431 11111222222 57887 888764
No 365
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=70.00 E-value=28 Score=33.95 Aligned_cols=77 Identities=21% Similarity=0.083 Sum_probs=45.0
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCCH---------------------HHHHHHHHHhHHHhCCCCceEE
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMDP---------------------WVVSNVLIPNLEWTGFLDVSSI 210 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~---------------------~al~~~ar~N~~~~gl~~~v~i 210 (317)
+...+|+=+||| .|+-... ++..|..+++.||.|. .-+ +.+++.++..+-.-+++.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka-~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKA-VAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHH-HHHHHHHHHHCCCcEEEE
Confidence 457889999887 3333333 4456888999999873 122 455666665543323555
Q ss_pred EEecHHHH-HHHHhhhcCCCCCccEEEE
Q 021116 211 HTVRVETF-LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 211 i~gD~~~~-l~~~~~~~~~~~~fDlV~~ 237 (317)
+..++... ...+ -..||+|+.
T Consensus 101 ~~~~~~~~~~~~~------~~~~DlVid 122 (339)
T PRK07688 101 IVQDVTAEELEEL------VTGVDLIID 122 (339)
T ss_pred EeccCCHHHHHHH------HcCCCEEEE
Confidence 55554321 1111 156898886
No 366
>PRK07062 short chain dehydrogenase; Provisional
Probab=69.88 E-value=45 Score=30.10 Aligned_cols=83 Identities=13% Similarity=0.000 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~ 226 (317)
..++.+|=.|++.| +|.+ +++.|+ +|+.++.+++.+ +.+.+.+....-..++.++..|+.+...- ..+..
T Consensus 6 l~~k~~lItGas~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 6 LEGRVAVVTGGSSG-IGLATVELLLEAGA-SVAICGRDEERL-ASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 45788888886554 4433 445676 699999999877 65555544322122466777777553211 11111
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|+++.+.
T Consensus 83 ~~~g~id~li~~A 95 (265)
T PRK07062 83 ARFGGVDMLVNNA 95 (265)
T ss_pred HhcCCCCEEEECC
Confidence 1125689998875
No 367
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.80 E-value=96 Score=29.56 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=50.2
Q ss_pred EEEECCCcchHHHH----HHHcC-CCEEEEEeCCHHHHHH-HHHHhHHHh-CCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 159 WLDLYSGTGSVGIE----AISRG-CSEVHFVEMDPWVVSN-VLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 159 VLDlgcGtG~l~Ie----aas~G-a~~V~aVDin~~al~~-~ar~N~~~~-gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
|.=+|+| .+|.. ++..| +.+++.+|+++..+ + .+.. +.+. .+.....+..+|..+. ..
T Consensus 3 I~IIGaG--~VG~~~a~~l~~~g~~~ev~l~D~~~~~~-~g~a~d-l~~~~~~~~~~~i~~~d~~~l-----------~~ 67 (308)
T cd05292 3 VAIVGAG--FVGSTTAYALLLRGLASEIVLVDINKAKA-EGEAMD-LAHGTPFVKPVRIYAGDYADC-----------KG 67 (308)
T ss_pred EEEECCC--HHHHHHHHHHHHcCCCCEEEEEECCchhh-hhHHHH-HHccccccCCeEEeeCCHHHh-----------CC
Confidence 4456664 44432 33456 36899999998755 3 2222 2111 1112234455554331 45
Q ss_pred ccEEEECCCCC--Cc-c-----------HHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 232 FDYMSVTPPYT--AV-D-----------YEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 232 fDlV~~dPPy~--~~-~-----------~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
.|+|++-++.. .+ . +.+..+.+. -..++|++++..+.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~---~~~~~giiiv~tNP 118 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQIL---KYAPDAILLVVTNP 118 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHCCCeEEEEecCc
Confidence 79999866542 22 1 233334443 25688998887653
No 368
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.22 E-value=93 Score=29.97 Aligned_cols=41 Identities=10% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~ 197 (317)
..+.+||=.|| |.+|+.+ + .+|+.+|+++|.+++.+ +.+++
T Consensus 184 ~~g~~VlV~G~--G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~-~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGL--GGIGLSVIQGARMAKASRIIAIDINPAKF-ELAKK 228 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH
Confidence 35788888865 5666543 3 35776799999999987 77754
No 369
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.73 E-value=15 Score=29.01 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 193 NVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 193 ~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
+.+++-++.+|++ +++...++.+.... ...||+|++-|
T Consensus 17 ~ki~~~~~~~~~~--~~v~~~~~~~~~~~-------~~~~Diil~~P 54 (96)
T cd05564 17 KKMKKAAEKRGID--AEIEAVPESELEEY-------IDDADVVLLGP 54 (96)
T ss_pred HHHHHHHHHCCCc--eEEEEecHHHHHHh-------cCCCCEEEECh
Confidence 3345555666774 77888887776432 26799999987
No 370
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=68.71 E-value=25 Score=34.90 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHhHHHh
Q 021116 134 EVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEWT 202 (317)
Q Consensus 134 ~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~---------Ga~~V~aVDin~~al~~~ar~N~~~~ 202 (317)
+.++..+.+.++..+. ...-.++++|+|+|.++--+++. .+.+++.||.|++-. +.=+++++..
T Consensus 60 ella~~~~~~wq~~g~----p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~-~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGR----PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR-ARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcC----CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH-HHHHHHHhcc
Confidence 3456666666654321 23467999999999998654431 255799999999986 6656666544
No 371
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.96 E-value=59 Score=31.51 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=54.8
Q ss_pred CeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHH-------hCCC-----CceEEEEecHHHHHHHH
Q 021116 157 GRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEW-------TGFL-----DVSSIHTVRVETFLERA 222 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~-------~gl~-----~~v~ii~gD~~~~l~~~ 222 (317)
.+|-=+|+|+=..++. ++..|. +|+..|.+++++ +.++..++. .++. +++++. .|..+.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av--- 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAE-AALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV--- 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh---
Confidence 4566676664233332 455665 699999999987 665553321 2211 122322 2333222
Q ss_pred hhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 223 EQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 223 ~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
..-|+|+-.-|-....-..++..+.+ .++++.+|..+++
T Consensus 82 -------~~aDlViEavpE~l~vK~~lf~~l~~--~~~~~aIlaSnTS 120 (321)
T PRK07066 82 -------ADADFIQESAPEREALKLELHERISR--AAKPDAIIASSTS 120 (321)
T ss_pred -------cCCCEEEECCcCCHHHHHHHHHHHHH--hCCCCeEEEECCC
Confidence 45799998876543333455666653 6788875544443
No 372
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.86 E-value=35 Score=35.86 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=47.8
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC-------CCceEEEEecHHHHHHHHh
Q 021116 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF-------LDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl-------~~~v~ii~gD~~~~l~~~~ 223 (317)
.+++||=.| |+|.+|..+ ++.|. +|++++.+.+.+ +.+.+++...++ ..+++++.+|+.+...-..
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGF-RVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 456666665 467777643 45665 699999998876 555554433221 1347889999876432111
Q ss_pred hhcCCCCCccEEEECC
Q 021116 224 QFVGKDGPFDYMSVTP 239 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dP 239 (317)
. -+..|+||.+.
T Consensus 156 a----LggiDiVVn~A 167 (576)
T PLN03209 156 A----LGNASVVICCI 167 (576)
T ss_pred H----hcCCCEEEEcc
Confidence 1 14689998764
No 373
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.82 E-value=66 Score=30.43 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=51.9
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||=.|+ |.+|..+ + .+|+..|+++|.+++.. +.+++ +|...-+.....+..+.+.... ..
T Consensus 165 ~~g~~vlI~g~--g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~ 233 (351)
T cd08285 165 KLGDTVAVFGI--GPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELAKE----YGATDIVDYKNGDVVEQILKLT----GG 233 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence 35778887754 5566543 3 35776799999999887 77653 5542211111123222222221 13
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
..+|+|+-.- +. ...+.... +.|+++|+++..
T Consensus 234 ~~~d~vld~~----g~-~~~~~~~~--~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAG----GG-QDTFEQAL--KVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECC----CC-HHHHHHHH--HHhhcCCEEEEe
Confidence 4689887531 11 12233332 257888987754
No 374
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.11 E-value=1e+02 Score=28.27 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~ 228 (317)
.++++||=.|+ |.+|+.+ + .+|+.+|+++|.+++.+ +.+++ +|.+. ++. .+..+...... .
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~----~Ga~~---~i~~~~~~~~~~~~~----~ 184 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALS----FGATA---LAEPEVLAERQGGLQ----N 184 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH----cCCcE---ecCchhhHHHHHHHh----C
Confidence 35778887755 5676543 2 35776799999999887 77754 45421 221 11111121111 1
Q ss_pred CCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 229 DGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 229 ~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+||--- +. ...++... ..++++|.+++.-
T Consensus 185 ~~g~d~vid~~----G~-~~~~~~~~--~~l~~~G~iv~~G 218 (280)
T TIGR03366 185 GRGVDVALEFS----GA-TAAVRACL--ESLDVGGTAVLAG 218 (280)
T ss_pred CCCCCEEEECC----CC-hHHHHHHH--HHhcCCCEEEEec
Confidence 23589887531 11 12232222 2678999988654
No 375
>PRK05876 short chain dehydrogenase; Provisional
Probab=66.95 E-value=66 Score=29.63 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=48.9
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+++ .+|.+ +++.|+ +|+.++.++..+ +.+.+.++..+. ++.++..|+.+... ......
T Consensus 4 ~~~k~vlVTGas~-gIG~ala~~La~~G~-~Vv~~~r~~~~l-~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 4 FPGRGAVITGGAS-GIGLATGTEFARRGA-RVVLGDVDKPGL-RQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred cCCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567888777654 44543 445676 699999998877 655555544442 46778888754321 111000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 79 ~~~g~id~li~nAg 92 (275)
T PRK05876 79 RLLGHVDVVFSNAG 92 (275)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899998764
No 376
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.93 E-value=13 Score=36.43 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCCCeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-----ecHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-----VRVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-----gD~~~~l~~~~~~~ 226 (317)
.++..+.=+|+|.=.+++. +-.+|++++++||+|++-. +.|+ .+|..+ +++ ..+.+.+....
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf-~~ak----~fGaTe---~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKF-EKAK----EFGATE---FINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHH-HHHH----hcCcce---ecChhhccccHHHHHHHHh---
Confidence 4677777776554333322 3357999999999999998 8775 466643 333 12445554443
Q ss_pred CCCCCccEEE
Q 021116 227 GKDGPFDYMS 236 (317)
Q Consensus 227 ~~~~~fDlV~ 236 (317)
++.+|+-|
T Consensus 260 --dgGvDysf 267 (375)
T KOG0022|consen 260 --DGGVDYSF 267 (375)
T ss_pred --cCCceEEE
Confidence 46788877
No 377
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.76 E-value=86 Score=28.16 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
..++++|=.|+ +|.+|.+ +++.|+ +|++++.+++.+ +.+.+.++... ..++.++..|+.+...- ..+...-
T Consensus 5 ~~~k~vlItG~-~~giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~-~~~~~~~~~D~~~~~~~-~~~~~~~ 79 (259)
T PRK06125 5 LAGKRVLITGA-SKGIGAAAAEAFAAEGC-HLHLVARDADAL-EALAADLRAAH-GVDVAVHALDLSSPEAR-EQLAAEA 79 (259)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCCHHHH-HHHHHHh
Confidence 35678888885 4455554 345677 799999998877 66665555432 23467788887543211 0000012
Q ss_pred CCccEEEECC
Q 021116 230 GPFDYMSVTP 239 (317)
Q Consensus 230 ~~fDlV~~dP 239 (317)
+..|.+|.++
T Consensus 80 g~id~lv~~a 89 (259)
T PRK06125 80 GDIDILVNNA 89 (259)
T ss_pred CCCCEEEECC
Confidence 5789999865
No 378
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.70 E-value=59 Score=31.21 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=51.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HH-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ER-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~-~~~~~ 226 (317)
..++.+|=.|+ +|.+|.+ ++++|+ +|+.++.+++.+ +.+.+.++..|. ++.++..|+.+.. .. .....
T Consensus 5 l~~k~vlITGA-s~GIG~aia~~la~~G~-~Vvl~~R~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 5 LHGAVVVITGA-SSGIGQATAEAFARRGA-RLVLAARDEEAL-QAVAEECRALGA--EVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCCCEEEEcCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHH
Confidence 45677887776 4455544 445676 699999999988 777777766553 3667777765321 11 11000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 80 ~~~g~iD~lVnnAG 93 (330)
T PRK06139 80 SFGGRIDVWVNNVG 93 (330)
T ss_pred HhcCCCCEEEECCC
Confidence 11256899998753
No 379
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.62 E-value=84 Score=30.10 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=53.3
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|+ |.|.+++.+++ +|+ +|++++.+++.. +.+++. +|.+.-+..... |..+.+.... .
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~-~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~ 226 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKV-DLLKNK---LGFDEAFNYKEEPDLDAALKRYF-----P 226 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHh---cCCCEEEECCCcccHHHHHHHHC-----C
Confidence 35788888876 35556665554 566 699999998876 666532 455321111111 3333333221 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
+.+|+||-.- +. ..+.... ..++++|.+++.
T Consensus 227 ~gvD~v~d~v----G~--~~~~~~~--~~l~~~G~iv~~ 257 (348)
T PLN03154 227 EGIDIYFDNV----GG--DMLDAAL--LNMKIHGRIAVC 257 (348)
T ss_pred CCcEEEEECC----CH--HHHHHHH--HHhccCCEEEEE
Confidence 3689887321 11 1233222 268999998864
No 380
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.15 E-value=8 Score=34.81 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE------ecHHHHHHHHhhhc
Q 021116 155 RPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT------VRVETFLERAEQFV 226 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~------gD~~~~l~~~~~~~ 226 (317)
++.||-=+-|=|=.+-.. -...+..+|+..|.|.+-- ... -+|+. .|..+-+
T Consensus 73 e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe-~yg------------~eFvfYDyN~p~dlp~~l------- 132 (217)
T KOG3350|consen 73 EGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFE-LYG------------TEFVFYDYNCPLDLPDEL------- 132 (217)
T ss_pred cCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHH-hcc------------ceeEEeccCCCCCCHHHH-------
Confidence 567777776666331111 1123456899999998653 222 12333 3444333
Q ss_pred CCCCCccEEEECCCCCCc-cHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTPPYTAV-DYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~-~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...||+|++||||-.. ...+.-..+. ++.+++-.+++...
T Consensus 133 --k~~fdiivaDPPfL~~eCl~Kts~tik--~L~r~~~kvilCtG 173 (217)
T KOG3350|consen 133 --KAHFDIIVADPPFLSEECLAKTSETIK--RLQRNQKKVILCTG 173 (217)
T ss_pred --HhcccEEEeCCccccchhhhhhHHHHH--HHhcCCceEEEech
Confidence 2569999999999642 2222222222 24555555555443
No 381
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.00 E-value=44 Score=32.90 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIP 197 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~ 197 (317)
.+.+|+=+|+| .+|..+ + ..|+ +|+.+|.+++.+ +.+..
T Consensus 166 ~~~~VlViGaG--~vG~~aa~~a~~lGa-~V~v~d~~~~~~-~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGG--VVGTNAAKMANGLGA-TVTILDINIDRL-RQLDA 208 (370)
T ss_pred CCceEEEEcCC--HHHHHHHHHHHHCCC-eEEEEECCHHHH-HHHHH
Confidence 45678878665 455433 2 3577 699999999876 65543
No 382
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.40 E-value=33 Score=30.33 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=45.2
Q ss_pred CcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCC--------------CCceEEEEecHHHHHHHHhhhc
Q 021116 165 GTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGF--------------LDVSSIHTVRVETFLERAEQFV 226 (317)
Q Consensus 165 GtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl--------------~~~v~ii~gD~~~~l~~~~~~~ 226 (317)
|.|.+|+.+ +..|. +|+++|+|++.+ +...+. ...+ ..+.+ ...|..+..
T Consensus 7 GlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v-~~l~~g--~~p~~E~~l~~ll~~~~~~~~l~-~t~~~~~ai------- 74 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGH-QVIGVDIDEEKV-EALNNG--ELPIYEPGLDELLKENVSAGRLR-ATTDIEEAI------- 74 (185)
T ss_dssp --STTHHHHHHHHHHTTS-EEEEE-S-HHHH-HHHHTT--SSSS-CTTHHHHHHHHHHTTSEE-EESEHHHHH-------
T ss_pred CCCcchHHHHHHHHhCCC-EEEEEeCChHHH-HHHhhc--cccccccchhhhhccccccccch-hhhhhhhhh-------
Confidence 777777653 34565 799999999987 655321 1111 11222 223444433
Q ss_pred CCCCCccEEEECC--CCCCc---c---HHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 227 GKDGPFDYMSVTP--PYTAV---D---YEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 227 ~~~~~fDlV~~dP--Py~~~---~---~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
...|++|+.- |+... + ++..++.+.. .++++.+++++..
T Consensus 75 ---~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~--~l~~~~lvV~~ST 121 (185)
T PF03721_consen 75 ---KDADVVFICVPTPSDEDGSPDLSYVESAIESIAP--VLRPGDLVVIEST 121 (185)
T ss_dssp ---HH-SEEEE----EBETTTSBETHHHHHHHHHHHH--HHCSCEEEEESSS
T ss_pred ---hccceEEEecCCCccccCCccHHHHHHHHHHHHH--HHhhcceEEEccE
Confidence 2368887643 44322 2 3555666653 6788777777653
No 383
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.37 E-value=31 Score=33.74 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=47.0
Q ss_pred CCCCeEEEECCCc-chHHHH-HHHcCCCEEEEEeCCH-------------------HHHHHHHHHhHHHhCCCCceEEEE
Q 021116 154 LRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMDP-------------------WVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ie-aas~Ga~~V~aVDin~-------------------~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+||=+|||. |+-.+. ++..|..+++.+|.|. .-+ +.+++.++..+-.-+++.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka-~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKA-ESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHH-HHHHHHHHHHCCCcEEEEEE
Confidence 3578999998873 433333 4567889999999885 233 56677776665433455554
Q ss_pred ecHHH--HHHHHhhhcCCCCCccEEEEC
Q 021116 213 VRVET--FLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 213 gD~~~--~l~~~~~~~~~~~~fDlV~~d 238 (317)
.++.. ....+ ..||+|+..
T Consensus 105 ~~i~~~~~~~~~-------~~~DvVvd~ 125 (355)
T PRK05597 105 RRLTWSNALDEL-------RDADVILDG 125 (355)
T ss_pred eecCHHHHHHHH-------hCCCEEEEC
Confidence 44321 11111 469998864
No 384
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.22 E-value=73 Score=26.23 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=46.8
Q ss_pred EEEECCCcchHHHH----HHHcCCCEEEEEeCC--HHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcCCC
Q 021116 159 WLDLYSGTGSVGIE----AISRGCSEVHFVEMD--PWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGKD 229 (317)
Q Consensus 159 VLDlgcGtG~l~Ie----aas~Ga~~V~aVDin--~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~~~ 229 (317)
+|=.|+ ++.+|.+ +++.|+.+|+.+..+ ...+ +.....++..+ .++++++.|+.+.-. .........
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~-~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGA-QELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHH-HHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeeccccccc-ccccccccccc--ccccccccccccccccccccccccccc
Confidence 444444 4566655 345677789999999 5555 55555565555 468899988543211 001111123
Q ss_pred CCccEEEECCCC
Q 021116 230 GPFDYMSVTPPY 241 (317)
Q Consensus 230 ~~fDlV~~dPPy 241 (317)
+..|++|.+...
T Consensus 79 ~~ld~li~~ag~ 90 (167)
T PF00106_consen 79 GPLDILINNAGI 90 (167)
T ss_dssp SSESEEEEECSC
T ss_pred cccccccccccc
Confidence 689999987643
No 385
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.99 E-value=93 Score=28.90 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhH-------HHhCC-C--------CceEEEEecHHH
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNL-------EWTGF-L--------DVSSIHTVRVET 217 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~-------~~~gl-~--------~~v~ii~gD~~~ 217 (317)
+|-=+|+ |.+|.. ++..|. +|+++|.+++.+ +.+++.+ ...|. . .++++ ..|...
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~g~-~V~~~d~~~~~~-~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 79 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVAGY-DVVMVDISDAAV-DRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD 79 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHCCC-ceEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH
Confidence 3444544 545443 445565 699999999987 6555322 22231 1 12221 234321
Q ss_pred HHHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 218 FLERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 218 ~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+ ...|+||..-|=......+++..+. +.++++.++....+
T Consensus 80 -~----------~~aDlVi~av~e~~~~k~~~~~~l~--~~~~~~~il~s~ts 119 (282)
T PRK05808 80 -L----------KDADLVIEAATENMDLKKKIFAQLD--EIAKPEAILATNTS 119 (282)
T ss_pred -h----------ccCCeeeecccccHHHHHHHHHHHH--hhCCCCcEEEECCC
Confidence 1 4579999865422212245666665 36788887744433
No 386
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=64.87 E-value=15 Score=35.27 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=65.7
Q ss_pred EEecCCCCCCCCChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhH
Q 021116 120 KLLSPKGMDVRPMMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 120 ~l~~p~~~~~rpt~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~ 199 (317)
++..|.+.--|.| -.+.+++...+....--.--.++...+|||+-.|..+-.+.+++- .|++||.-+-+. |+
T Consensus 177 RLKfp~dAPSRSt-LKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~------sL 248 (358)
T COG2933 177 RLKFPADAPSRST-LKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQ------SL 248 (358)
T ss_pred cccCCCCCCchhh-hhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhh------hh
Confidence 4444444332433 336677766553321000013578999999999999998989886 699999888553 22
Q ss_pred HHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECC
Q 021116 200 EWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 200 ~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dP 239 (317)
-.. .+++-...|-+.|.. .....|-.++|.
T Consensus 249 ~dt---g~v~h~r~DGfk~~P-------~r~~idWmVCDm 278 (358)
T COG2933 249 MDT---GQVTHLREDGFKFRP-------TRSNIDWMVCDM 278 (358)
T ss_pred hcc---cceeeeeccCccccc-------CCCCCceEEeeh
Confidence 223 347778888887753 235789999985
No 387
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=64.14 E-value=81 Score=28.02 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHH-----HHHHHhh
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVET-----FLERAEQ 224 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~-----~l~~~~~ 224 (317)
.+++++|=.| |+|.+|.. +++.|+ +|++++.++..+ +...+.++..+. .++.++..|+.. .......
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGA-TVILLGRTEEKL-EAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCC-cEEEEeCCHHHH-HHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence 3577888888 46677664 345666 799999999876 666555555443 346677766631 1110000
Q ss_pred hcCCCCCccEEEECC
Q 021116 225 FVGKDGPFDYMSVTP 239 (317)
Q Consensus 225 ~~~~~~~fDlV~~dP 239 (317)
+....++.|.||.+.
T Consensus 86 ~~~~~~~id~vi~~A 100 (247)
T PRK08945 86 IEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 101125789999754
No 388
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.08 E-value=4.6 Score=38.46 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=28.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPW 189 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~ 189 (317)
..++.+-|+|+|||.+|-.+-+.|- .|++-|+.--
T Consensus 26 ~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~y 60 (330)
T COG3392 26 LSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEYY 60 (330)
T ss_pred cCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHHH
Confidence 5678999999999999998877764 5888887543
No 389
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=64.05 E-value=96 Score=29.10 Aligned_cols=97 Identities=14% Similarity=-0.024 Sum_probs=51.3
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||=.|+ |.+|+.+ + ..|+.+|++++.+++.. +.++ .+|...-+.....+ .+.+.... ..
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~----~~ga~~~i~~~~~~-~~~~~~~~----~~ 229 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERL-ELAK----ALGADFVINSGQDD-VQEIRELT----SG 229 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHH----HhCCCEEEcCCcch-HHHHHHHh----CC
Confidence 35778877754 6676643 2 35776699999999887 7664 34542211111112 11121111 12
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+||-... . ...+.... +.|+++|.+++..
T Consensus 230 ~~~d~vid~~g----~-~~~~~~~~--~~l~~~G~~v~~g 262 (339)
T cd08239 230 AGADVAIECSG----N-TAARRLAL--EAVRPWGRLVLVG 262 (339)
T ss_pred CCCCEEEECCC----C-HHHHHHHH--HHhhcCCEEEEEc
Confidence 36998885421 1 11222211 2578899887643
No 390
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=63.91 E-value=5.8 Score=36.33 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHcCCCC-CCcccCCChhhhhhhhccCCceeeecccccccccccce
Q 021116 54 LTSEDKKELLKRYGLDP-DEFLSEPSPKTRRRKEGRGSKLVVSDEKSQEERTTHRL 108 (317)
Q Consensus 54 ~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~i 108 (317)
....+++++|.+.|++. ...|+|.+.++.|++ ..+.+.....+.+++++...+
T Consensus 151 ~~P~~IA~~L~~~G~~~~~~~VlE~L~~~~Eri--~~~~~~~~~~~~fsdlnVv~v 204 (210)
T COG2241 151 FGPAEIAKLLTENGIGDSRVTVLENLGYPDERI--TDGTAEDIAAEEFSDLNVVAV 204 (210)
T ss_pred CCHHHHHHHHHhCCCCCceEEEEcccCCCchhh--hcCchhhhcccccCCceEEEE
Confidence 55789999999999985 888999999999999 778776666666777776543
No 391
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.85 E-value=24 Score=34.69 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCC
Q 021116 155 RPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMD 187 (317)
Q Consensus 155 ~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin 187 (317)
.+.+|+=+||| .|...+. ++..|..+++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999886 3443333 456788899999998
No 392
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.79 E-value=93 Score=27.40 Aligned_cols=82 Identities=9% Similarity=0.051 Sum_probs=48.1
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
.+++++|=.|+ +|.+|..+ ++.|. +|+.++.++..+ +.+.+.++..+ .++.+++.|+.+... . .....
T Consensus 3 ~~~~~~lItG~-~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 3 LKDKVIVITGG-AQGLGRAMAEYLAQKGA-KLALIDLNQEKL-EEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 35778888875 45555543 35676 699999998776 55555554433 346778888643211 1 11010
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+.+|.||.+.-
T Consensus 78 ~~~~~id~vi~~ag 91 (253)
T PRK08217 78 EDFGQLNGLINNAG 91 (253)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899997653
No 393
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.57 E-value=84 Score=28.03 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=50.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
.+++++|=.|+ +|.+|.. +++.|+ +|+.++.+++.+ +.+.+.++..+ .++.++.+|+.+... ...+..
T Consensus 9 ~~~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 9 LAGQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATL-EAAVAALRAAG--GAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 46788988885 4555544 345676 699999998876 66655565544 346778887654221 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-++.|.+|.+.-
T Consensus 84 ~~~~~id~vi~~ag 97 (256)
T PRK06124 84 AEHGRLDILVNNVG 97 (256)
T ss_pred HhcCCCCEEEECCC
Confidence 11246899998653
No 394
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=63.54 E-value=28 Score=35.03 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCeEEEECCCcchHHHHHH-HcCCCEEEEEeCCHHHHHHHHH
Q 021116 156 PGRWLDLYSGTGSVGIEAI-SRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaa-s~Ga~~V~aVDin~~al~~~ar 196 (317)
-..|+|+|+|-|.++-.+. ..|. .|++||-|.... +.|+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~-~ra~ 193 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLV-ERAQ 193 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHH-HHHH
Confidence 4689999999999996432 2344 699999997765 4443
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.53 E-value=1.3e+02 Score=28.20 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=53.1
Q ss_pred CeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-------CCC---------CceEEEEecHHHH
Q 021116 157 GRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWT-------GFL---------DVSSIHTVRVETF 218 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~-------gl~---------~~v~ii~gD~~~~ 218 (317)
.+|.=+|+|+=..++. ++..|. +|+.+|.+++.+ +.+.+++..+ |.- .++++ ..|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~-~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRL-EAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH-
Confidence 3566566665444443 344565 699999999987 7655433321 210 11222 233321
Q ss_pred HHHHhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 219 LERAEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 219 l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+ ...|+||.--|-.......++..+. ..++++.+++..++
T Consensus 81 ~----------~~aD~Vieavpe~~~~k~~~~~~l~--~~~~~~~ii~s~ts 120 (292)
T PRK07530 81 L----------ADCDLVIEAATEDETVKRKIFAQLC--PVLKPEAILATNTS 120 (292)
T ss_pred h----------cCCCEEEEcCcCCHHHHHHHHHHHH--hhCCCCcEEEEcCC
Confidence 1 4579999875532222344555554 36788887764443
No 396
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=63.42 E-value=58 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCC
Q 021116 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMD 187 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin 187 (317)
.+.+|+=+|||. +|.+ ++..|..+++.+|-+
T Consensus 18 ~~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECC
Confidence 467899998773 4444 345688899999866
No 397
>PRK07890 short chain dehydrogenase; Provisional
Probab=63.40 E-value=1e+02 Score=27.40 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
..++++|=.|+ +|.+|.. ++++|+ +|+.++.++..+ +.+...++..+ .++.++..|+.+... . .....
T Consensus 3 l~~k~vlItGa-~~~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 77 (258)
T PRK07890 3 LKGKVVVVSGV-GPGLGRTLAVRAARAGA-DVVLAARTAERL-DEVAAEIDDLG--RRALAVPTDITDEDQCANLVALAL 77 (258)
T ss_pred cCCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHH
Confidence 35678887765 5555554 456776 699999999876 66655554433 347788888754321 1 10000
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|.||.+.
T Consensus 78 ~~~g~~d~vi~~a 90 (258)
T PRK07890 78 ERFGRVDALVNNA 90 (258)
T ss_pred HHcCCccEEEECC
Confidence 0124689999865
No 398
>PRK08328 hypothetical protein; Provisional
Probab=62.86 E-value=42 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCC
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMD 187 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin 187 (317)
..+.+|+=+||| .|+-.+. ++..|..+++.+|.|
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 357889999988 3443333 456788999999955
No 399
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=62.67 E-value=70 Score=30.37 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCcchHHH---HHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGI---EAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I---eaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||=.|+ |.+|. .+++ .|+ +|++++.+++.. +.+++ +|.+. ++..+ +. ..
T Consensus 164 ~~g~~VlV~G~--g~iG~~a~~~a~~~G~-~vi~~~~~~~~~-~~a~~----~Ga~~---vi~~~--~~---------~~ 221 (329)
T TIGR02822 164 PPGGRLGLYGF--GGSAHLTAQVALAQGA-TVHVMTRGAAAR-RLALA----LGAAS---AGGAY--DT---------PP 221 (329)
T ss_pred CCCCEEEEEcC--CHHHHHHHHHHHHCCC-eEEEEeCChHHH-HHHHH----hCCce---ecccc--cc---------Cc
Confidence 35789998886 34443 3333 566 699999999887 77654 66532 22111 10 01
Q ss_pred CCccEEEE-CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSV-TPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~-dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
+.+|+++. +. . ...+.... +.|+++|++++.-
T Consensus 222 ~~~d~~i~~~~-----~-~~~~~~~~--~~l~~~G~~v~~G 254 (329)
T TIGR02822 222 EPLDAAILFAP-----A-GGLVPPAL--EALDRGGVLAVAG 254 (329)
T ss_pred ccceEEEECCC-----c-HHHHHHHH--HhhCCCcEEEEEe
Confidence 35787664 42 1 11232222 2689999997754
No 400
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=62.32 E-value=4.7 Score=32.45 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=11.6
Q ss_pred CccEEEECCCCCC
Q 021116 231 PFDYMSVTPPYTA 243 (317)
Q Consensus 231 ~fDlV~~dPPy~~ 243 (317)
.||+|+-||||..
T Consensus 2 kFD~VIGNPPY~~ 14 (106)
T PF07669_consen 2 KFDVVIGNPPYIK 14 (106)
T ss_pred CcCEEEECCCChh
Confidence 5999999999974
No 401
>PRK08862 short chain dehydrogenase; Provisional
Probab=62.22 E-value=92 Score=27.89 Aligned_cols=82 Identities=6% Similarity=-0.104 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCcch---HHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGS---VGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~---l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~ 227 (317)
..++++|=.|++.|. ++..+++.|+ +|+.++.++..+ +.+.+.++..+. ++..+..|+.+.. ........
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l-~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSAL-KDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHH-HHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHH
Confidence 457788888887763 3334556776 699999999887 666665655442 3555666543321 11111111
Q ss_pred CCC-CccEEEECC
Q 021116 228 KDG-PFDYMSVTP 239 (317)
Q Consensus 228 ~~~-~fDlV~~dP 239 (317)
.-+ ..|++|.+.
T Consensus 79 ~~g~~iD~li~na 91 (227)
T PRK08862 79 QFNRAPDVLVNNW 91 (227)
T ss_pred HhCCCCCEEEECC
Confidence 114 789999875
No 402
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=62.07 E-value=64 Score=32.58 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=54.0
Q ss_pred CeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhh---h----
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQ---F---- 225 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~---~---- 225 (317)
.++-=+ |-|.+|+. .+++|. +|+++|+|+..+ +.. |. | +..+..-+....+..... +
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~G~-~ViG~DIn~~~V-d~l--n~---G---~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASAGF-KVIGVDINQKKV-DKL--NR---G---ESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHcCC-ceEeEeCCHHHH-HHH--hC---C---cceeecCcHHHHHHHHHhcCCceEec
Confidence 344444 56667664 345676 599999999998 544 22 2 234445555443322210 0
Q ss_pred cC-CCCCccEEEECCC--CCC---ccH---HHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 226 VG-KDGPFDYMSVTPP--YTA---VDY---EVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 226 ~~-~~~~fDlV~~dPP--y~~---~~~---~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+. .-..-|++++.-| +.. .++ +...+.+. +.|++|-++++|..
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa--~~L~kG~LVIlEST 129 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIA--PVLKKGDLVILEST 129 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHH--HhcCCCCEEEEecC
Confidence 00 0014576665433 332 233 33344443 58999999999865
No 403
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=61.95 E-value=67 Score=26.54 Aligned_cols=71 Identities=13% Similarity=0.012 Sum_probs=38.8
Q ss_pred EEEECCCcchHHHH----HHHcCCCEEEEEeCCH-------------------HHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 159 WLDLYSGTGSVGIE----AISRGCSEVHFVEMDP-------------------WVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 159 VLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~-------------------~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
|+=+||| .+|.+ ++..|..+++.+|.+. .-+ +.+++.++..+-.-+++.+..++
T Consensus 2 VliiG~G--glGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka-~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 2 VLLVGLG--GLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKA-EVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred EEEECCC--HHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHH-HHHHHHHHHHCCCcEEEEEeeec
Confidence 4555654 55544 3456888899998771 122 45566666555332345555444
Q ss_pred HHHH-HHHhhhcCCCCCccEEEEC
Q 021116 216 ETFL-ERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 216 ~~~l-~~~~~~~~~~~~fDlV~~d 238 (317)
.... ... -..||+||..
T Consensus 79 ~~~~~~~~------~~~~diVi~~ 96 (143)
T cd01483 79 SEDNLDDF------LDGVDLVIDA 96 (143)
T ss_pred ChhhHHHH------hcCCCEEEEC
Confidence 3321 111 1579999964
No 404
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=61.68 E-value=46 Score=27.59 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=46.8
Q ss_pred CCCCeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
..++++|=+|+|--+-++. +...|+.+|+.+..+.+.+ +...+.+ +- ..++++..+ +..... ..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra-~~l~~~~---~~-~~~~~~~~~--~~~~~~-------~~ 75 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA-EALAEEF---GG-VNIEAIPLE--DLEEAL-------QE 75 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH-HHHHHHH---TG-CSEEEEEGG--GHCHHH-------HT
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHc---Cc-cccceeeHH--HHHHHH-------hh
Confidence 5789999998864333332 3467998999999998876 5544444 21 225555432 222122 57
Q ss_pred ccEEEECCCCCC
Q 021116 232 FDYMSVTPPYTA 243 (317)
Q Consensus 232 fDlV~~dPPy~~ 243 (317)
+|+||.-.|-..
T Consensus 76 ~DivI~aT~~~~ 87 (135)
T PF01488_consen 76 ADIVINATPSGM 87 (135)
T ss_dssp ESEEEE-SSTTS
T ss_pred CCeEEEecCCCC
Confidence 999998776543
No 405
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.56 E-value=45 Score=33.13 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCCCeEEEECCCcchHHHH--HHHcCCCEEEEEeCCH-HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDP-WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~-~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
..+++|+=+|+|...+++. ++..|+ +|+++|.+. ..+ +...+.+...| ++++.+|..+.. .+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~~l~~~~----~~~~~~~~~~~~---------~~ 67 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQL-KEALEELGELG----IELVLGEYPEEF---------LE 67 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHH-HHHHHHHHhcC----CEEEeCCcchhH---------hh
Confidence 3567888887766333332 345676 699999985 333 22223343333 456777765421 15
Q ss_pred CccEEEECCC
Q 021116 231 PFDYMSVTPP 240 (317)
Q Consensus 231 ~fDlV~~dPP 240 (317)
.+|+||..+=
T Consensus 68 ~~d~vv~~~g 77 (450)
T PRK14106 68 GVDLVVVSPG 77 (450)
T ss_pred cCCEEEECCC
Confidence 6899998763
No 406
>PRK08339 short chain dehydrogenase; Provisional
Probab=61.50 E-value=46 Score=30.37 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
..++++|=.|++.| +|. .+++.|+ +|+.++.++..+ +.+.+.++... ..++.++.+|+.+... . .....
T Consensus 6 l~~k~~lItGas~g-IG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 6 LSGKLAFTTASSKG-IGFGVARVLARAGA-DVILLSRNEENL-KKAREKIKSES-NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCCEEEEeCCCCc-HHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHH
Confidence 45778888886554 343 3456776 699999998887 66666654321 1247788888754321 1 11110
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
.-+..|+++.+.
T Consensus 82 -~~g~iD~lv~na 93 (263)
T PRK08339 82 -NIGEPDIFFFST 93 (263)
T ss_pred -hhCCCcEEEECC
Confidence 125689988764
No 407
>PRK07677 short chain dehydrogenase; Provisional
Probab=61.45 E-value=1.1e+02 Score=27.23 Aligned_cols=78 Identities=14% Similarity=0.004 Sum_probs=45.2
Q ss_pred CeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcCCC
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVGKD 229 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~~~ 229 (317)
+++|=.|++.| +|.. +++.|+ +|+.++.++..+ +.+.+.++..+ .++.++..|+.+.. .........-
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKL-EEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46776776444 4443 445676 799999998876 65555554333 35778888864321 1010000112
Q ss_pred CCccEEEECC
Q 021116 230 GPFDYMSVTP 239 (317)
Q Consensus 230 ~~fDlV~~dP 239 (317)
+..|.++.+.
T Consensus 77 ~~id~lI~~a 86 (252)
T PRK07677 77 GRIDALINNA 86 (252)
T ss_pred CCccEEEECC
Confidence 4689999764
No 408
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=61.19 E-value=28 Score=32.40 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=33.8
Q ss_pred HHHcCCCEEEEEeCCHHHH-HHHHHHhHHHhC-CCCceEEEEecH----HHHHHHHhhhcCCCCCccEEEECCC
Q 021116 173 AISRGCSEVHFVEMDPWVV-SNVLIPNLEWTG-FLDVSSIHTVRV----ETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 173 aas~Ga~~V~aVDin~~al-~~~ar~N~~~~g-l~~~v~ii~gD~----~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
++++|. +|..+|-||.-- .++ ++|....| ..+++.+...+= .+...... ...||+|++|-+
T Consensus 26 la~~G~-~V~lIDaDpn~pl~~W-~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~-----~~~~d~VlvDle 92 (231)
T PF07015_consen 26 LAARGA-RVALIDADPNQPLAKW-AENAQRPGAWPDRIEVYEADELTILEDAYEAAE-----ASGFDFVLVDLE 92 (231)
T ss_pred HHHCCC-eEEEEeCCCCCcHHHH-HHhccccCCCCCCeeEEeccchhhHHHHHHHHH-----hcCCCEEEEeCC
Confidence 445675 699999987632 134 33443333 344566665432 22222221 245999999964
No 409
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=61.03 E-value=1.5e+02 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar 196 (317)
..+.+||=.|+ |.+|+.+ + .+|+.+|+++|.+++.+ +.++
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~-~~~~ 228 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKF-ELAK 228 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHH
Confidence 35788888764 6676653 3 35776799999999887 7664
No 410
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=61.00 E-value=11 Score=40.00 Aligned_cols=54 Identities=22% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHH-cCC-CEEEEEeCCHH
Q 021116 136 VKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAIS-RGC-SEVHFVEMDPW 189 (317)
Q Consensus 136 v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas-~Ga-~~V~aVDin~~ 189 (317)
..++.|..++.+.......++..||||||..|+..-.|.. .+. .-|++||+-|-
T Consensus 25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 5678888887653322224678899999999988765554 442 45999999874
No 411
>PRK07035 short chain dehydrogenase; Provisional
Probab=60.89 E-value=98 Score=27.53 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=47.9
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+++ .+|.+ +++.|. +|+.++.++..+ +...+.+...+ .++.+++.|+.+... ...+..
T Consensus 6 l~~k~vlItGas~-gIG~~l~~~l~~~G~-~Vi~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 80 (252)
T PRK07035 6 LTGKIALVTGASR-GIGEAIAKLLAQQGA-HVIVSSRKLDGC-QAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIR 80 (252)
T ss_pred cCCCEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3567788787654 44443 445676 799999998877 66655554433 236677777643321 111000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|+++.+..
T Consensus 81 ~~~~~id~li~~ag 94 (252)
T PRK07035 81 ERHGRLDILVNNAA 94 (252)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899997653
No 412
>PRK06949 short chain dehydrogenase; Provisional
Probab=60.74 E-value=96 Score=27.59 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~ 226 (317)
..++++|=.| |+|.+|..+ ++.|+ +|++++.+++.+ +.+...++..+ .++.++.+|+.+.. .....+.
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERL-KELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578888888 556666543 34566 699999999887 66666554333 34778888764321 1111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|+++.+..
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 11246899998653
No 413
>PRK06197 short chain dehydrogenase; Provisional
Probab=60.73 E-value=90 Score=29.02 Aligned_cols=83 Identities=7% Similarity=-0.007 Sum_probs=48.5
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+ +|.+|.++ +++|+ +|+.+..+++.. +.+.+.+....-..++.++..|+.+... ....+.
T Consensus 14 ~~~k~vlItGa-s~gIG~~~a~~l~~~G~-~vi~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAVVTGA-NTGLGYETAAALAAKGA-HVVLAVRNLDKG-KAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 35678886664 56666553 35676 699999998776 5555555432112347788888754321 111111
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|++|.+.
T Consensus 91 ~~~~~iD~li~nA 103 (306)
T PRK06197 91 AAYPRIDLLINNA 103 (306)
T ss_pred hhCCCCCEEEECC
Confidence 1124689999865
No 414
>PRK08267 short chain dehydrogenase; Provisional
Probab=60.34 E-value=53 Score=29.48 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=45.1
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---HhhhcCC-C
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFVGK-D 229 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~~~-~ 229 (317)
++|=.|+. |.+|.+ +++.|+ +|+.++.+++.+ +.+.+.+. + .+++++++|+.+...- ....... .
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGW-RVGAYDINEAGL-AALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56667654 555554 345675 699999999887 65554433 2 3478888887653211 0000001 3
Q ss_pred CCccEEEECCC
Q 021116 230 GPFDYMSVTPP 240 (317)
Q Consensus 230 ~~fDlV~~dPP 240 (317)
++.|.|+.+.-
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK08267 76 GRLDVLFNNAG 86 (260)
T ss_pred CCCCEEEECCC
Confidence 56899998653
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=59.69 E-value=1.1e+02 Score=28.48 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=24.8
Q ss_pred eEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhH
Q 021116 158 RWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNL 199 (317)
Q Consensus 158 rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~ 199 (317)
+|.=+||| .+|. .++..|. +|+.+|.+++.+ +.+++.+
T Consensus 5 ~I~ViGaG--~mG~~iA~~la~~G~-~V~l~d~~~~~l-~~~~~~i 46 (291)
T PRK06035 5 VIGVVGSG--VMGQGIAQVFARTGY-DVTIVDVSEEIL-KNAMELI 46 (291)
T ss_pred EEEEECcc--HHHHHHHHHHHhcCC-eEEEEeCCHHHH-HHHHHHH
Confidence 45555555 4443 2345565 699999999998 7765543
No 416
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=59.62 E-value=12 Score=34.63 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCeEEEECCCcchHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHhHHH
Q 021116 156 PGRWLDLYSGTGSVGIEAISR---------GCSEVHFVEMDPWVVSNVLIPNLEW 201 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Ieaas~---------Ga~~V~aVDin~~al~~~ar~N~~~ 201 (317)
.-+|+|+|+|+|.++.-.+.. ..-+++.||.++... +.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHHhhh
Confidence 369999999999999765531 124799999999886 777776654
No 417
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=59.60 E-value=72 Score=26.33 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+++-+||| .+|... +..|..+|+.+|.+++.. +...+...... +.....|..+..
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~---------- 79 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKA-KALAERFGELG----IAIAYLDLEELL---------- 79 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHH-HHHHHHHhhcc----cceeecchhhcc----------
Confidence 457889988875 555432 234455799999998876 55444332111 111222332221
Q ss_pred CCccEEEECCCCC
Q 021116 230 GPFDYMSVTPPYT 242 (317)
Q Consensus 230 ~~fDlV~~dPPy~ 242 (317)
...|+|++.-|..
T Consensus 80 ~~~Dvvi~~~~~~ 92 (155)
T cd01065 80 AEADLIINTTPVG 92 (155)
T ss_pred ccCCEEEeCcCCC
Confidence 5689999865543
No 418
>PRK08251 short chain dehydrogenase; Provisional
Probab=59.37 E-value=98 Score=27.40 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=48.0
Q ss_pred CCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcCC
Q 021116 156 PGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGK 228 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~~ 228 (317)
++++|=.| |+|.+|... ++.|. +|+.++.++..+ +.....+....-..++.++.+|+.+... ...+....
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGR-DLALCARRTDRL-EELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35677777 466777653 34565 799999999887 6655554432212347788888764321 11111112
Q ss_pred CCCccEEEECC
Q 021116 229 DGPFDYMSVTP 239 (317)
Q Consensus 229 ~~~fDlV~~dP 239 (317)
.+..|.||.+.
T Consensus 79 ~~~id~vi~~a 89 (248)
T PRK08251 79 LGGLDRVIVNA 89 (248)
T ss_pred cCCCCEEEECC
Confidence 25689999865
No 419
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=59.31 E-value=21 Score=33.44 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCCCCCeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHH
Q 021116 132 MMEVVKGAAFDILQSAGGCPASLRPGRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 132 t~~~v~~alf~~L~~~~~~~~~~~~~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al 191 (317)
....+...+...+.. ...+.+|+|||+|++.+... ...++.-|+|++.+
T Consensus 10 gK~~l~~~i~~~~p~--------~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li 58 (266)
T TIGR00571 10 GKTSLLPEIKKHLPK--------NFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLI 58 (266)
T ss_pred cHHHHHHHHHHhcCc--------ccCEEEEecCCcchhheeec---CcEEEEecCCHHHH
Confidence 345566666555532 23589999999999998542 23588899999876
No 420
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=59.23 E-value=6.2 Score=40.54 Aligned_cols=98 Identities=10% Similarity=0.222 Sum_probs=51.9
Q ss_pred CeEEEECCCcchHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEE
Q 021116 157 GRWLDLYSGTGSVGIEAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~ 236 (317)
..|+|+.+|.|+|+.++.... |..+-.-|..- ...-.-+-.-|+-. +++ |..+.+.. -..+||+|=
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~-~ntL~vIydRGLIG---~yh-DWCE~fsT------YPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSG-PNTLPVIYDRGLIG---VYH-DWCEAFST------YPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCC-CCcchhhhhcccch---hcc-chhhccCC------CCcchhhee
Confidence 469999999999997665544 33333222210 00101111223311 111 32222222 246799998
Q ss_pred ECCCCCC----ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 237 VTPPYTA----VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 237 ~dPPy~~----~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
+|-=|.. +.++.++-.+- |+|+|+|++++...
T Consensus 433 A~~lfs~~~~rC~~~~illEmD--RILRP~G~~iiRD~ 468 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMD--RILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhH--hhcCCCceEEEecc
Confidence 8754432 23444443332 79999999999765
No 421
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=58.90 E-value=62 Score=28.34 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=60.5
Q ss_pred EEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-------CC---------CCceEEEEecHHHHHHH
Q 021116 160 LDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWT-------GF---------LDVSSIHTVRVETFLER 221 (317)
Q Consensus 160 LDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~-------gl---------~~~v~ii~gD~~~~l~~ 221 (317)
-=+|+|+=..++. ++..|. +|+.+|.|++.+ +.+++.++.. |. .++++ +..|+.+.
T Consensus 3 ~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 3 AVIGAGTMGRGIAALFARAGY-EVTLYDRSPEAL-ERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHH-HHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred EEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHH-HhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 3355554333333 345565 799999999998 8887766641 11 11232 23343332
Q ss_pred HhhhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCCccccCCCeEEEEEeecCceEEEEEeec
Q 021116 222 AEQFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTDMLDTCGCLVKIKDRRFGRTHLAIYGPD 301 (317)
Q Consensus 222 ~~~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~l~~~~~~~~~~~~r~yG~~~l~~~~p~ 301 (317)
...|+|+=.-|=....-.+++..+. ..+.++.+|...++. -.+.+....+. ...++ .-+.||.|.
T Consensus 77 --------~~adlViEai~E~l~~K~~~~~~l~--~~~~~~~ilasnTSs-l~i~~la~~~~--~p~R~--ig~Hf~~P~ 141 (180)
T PF02737_consen 77 --------VDADLVIEAIPEDLELKQELFAELD--EICPPDTILASNTSS-LSISELAAALS--RPERF--IGMHFFNPP 141 (180)
T ss_dssp --------CTESEEEE-S-SSHHHHHHHHHHHH--CCS-TTSEEEE--SS-S-HHHHHTTSS--TGGGE--EEEEE-SST
T ss_pred --------hhhheehhhccccHHHHHHHHHHHH--HHhCCCceEEecCCC-CCHHHHHhccC--cCceE--EEEeccccc
Confidence 2579998665432223355666665 477888887776553 33333323321 11121 456677766
Q ss_pred h
Q 021116 302 W 302 (317)
Q Consensus 302 ~ 302 (317)
+
T Consensus 142 ~ 142 (180)
T PF02737_consen 142 H 142 (180)
T ss_dssp T
T ss_pred c
Confidence 5
No 422
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=58.87 E-value=35 Score=28.20 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=50.9
Q ss_pred CCcchHHHHHH---HcCCCEEEEEeCCHHHHHHHHHHh-HHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 164 SGTGSVGIEAI---SRGCSEVHFVEMDPWVVSNVLIPN-LEWTGFLDVSSIHT-VRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 164 cGtG~l~Ieaa---s~Ga~~V~aVDin~~al~~~ar~N-~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
.|.|++|...+ ++...+|+.+...+ -+ +..+++ +...+...+..+.. ......... ...||+||+-
T Consensus 4 ~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D~viv~ 74 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQAGHDVTLVSRSP-RL-EAIKEQGLTITGPDGDETVQPPIVISAPSAD-------AGPYDLVIVA 74 (151)
T ss_dssp ESTSHHHHHHHHHHHHTTCEEEEEESHH-HH-HHHHHHCEEEEETTEEEEEEEEEEESSHGHH-------HSTESEEEE-
T ss_pred ECcCHHHHHHHHHHHHCCCceEEEEccc-cH-HhhhheeEEEEecccceecccccccCcchhc-------cCCCcEEEEE
Confidence 36777876532 23334799999999 44 433322 22111111111111 111111011 2789999997
Q ss_pred CCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 239 PPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 239 PPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
-. ....++.++.+. +.+.+++.+++..+.-
T Consensus 75 vK--a~~~~~~l~~l~--~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 75 VK--AYQLEQALQSLK--PYLDPNTTIVSLQNGM 104 (151)
T ss_dssp SS--GGGHHHHHHHHC--TGEETTEEEEEESSSS
T ss_pred ec--ccchHHHHHHHh--hccCCCcEEEEEeCCC
Confidence 42 235677777765 5889998888776643
No 423
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=58.84 E-value=1.2e+02 Score=29.71 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=28.9
Q ss_pred CCCeEEEECC-C-cchHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHh
Q 021116 155 RPGRWLDLYS-G-TGSVGIEAISR---GCSEVHFVEMDPWVVSNVLIPN 198 (317)
Q Consensus 155 ~~~rVLDlgc-G-tG~l~Ieaas~---Ga~~V~aVDin~~al~~~ar~N 198 (317)
.+.+||=+|+ | .|.+++.+++. |+.+|+++|.+++.+ +.+++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~-~~a~~~ 222 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERL-ARAQRL 222 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHH-HHHHHh
Confidence 5678876652 2 44444444443 445799999999998 888764
No 424
>PRK06194 hypothetical protein; Provisional
Probab=58.71 E-value=93 Score=28.34 Aligned_cols=81 Identities=7% Similarity=0.029 Sum_probs=46.8
Q ss_pred CCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--HH-hhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--RA-EQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~~-~~~~~ 227 (317)
.++++|=.| |+|.+|.+ ++++|+ +|+.+|.+...+ +...+.+...+ .++.++.+|+.+... .. .....
T Consensus 5 ~~k~vlVtG-asggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 5 AGKVAVITG-AASGFGLAFARIGAALGM-KLVLADVQQDAL-DRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCEEEEeC-CccHHHHHHHHHHHHCCC-EEEEEeCChHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467788666 44555554 345676 699999998776 54444443333 247778888754321 11 10001
Q ss_pred CCCCccEEEECCC
Q 021116 228 KDGPFDYMSVTPP 240 (317)
Q Consensus 228 ~~~~fDlV~~dPP 240 (317)
..+..|+||.+.-
T Consensus 80 ~~g~id~vi~~Ag 92 (287)
T PRK06194 80 RFGAVHLLFNNAG 92 (287)
T ss_pred HcCCCCEEEECCC
Confidence 1246799998653
No 425
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=58.38 E-value=73 Score=31.92 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=46.4
Q ss_pred CeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
.+||=+|| |.+|-. ++++|..+|+..|.+++.+ +.+..+.. .+++.++-|+.+.-....-+ ..+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~-~~i~~~~~-----~~v~~~~vD~~d~~al~~li----~~~ 69 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKC-ARIAELIG-----GKVEALQVDAADVDALVALI----KDF 69 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHhhcc-----ccceeEEecccChHHHHHHH----hcC
Confidence 46888888 445443 3456657899999999887 66655432 14778888876653221111 456
Q ss_pred cEEEECCCC
Q 021116 233 DYMSVTPPY 241 (317)
Q Consensus 233 DlV~~dPPy 241 (317)
|+||.--|+
T Consensus 70 d~VIn~~p~ 78 (389)
T COG1748 70 DLVINAAPP 78 (389)
T ss_pred CEEEEeCCc
Confidence 999965443
No 426
>PRK07478 short chain dehydrogenase; Provisional
Probab=58.31 E-value=1.4e+02 Score=26.67 Aligned_cols=82 Identities=12% Similarity=0.003 Sum_probs=49.2
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|++ |.+|.+ +++.|+ +|+.++.++..+ +.+.+.++..+ .++.++.+|+.+... ...+..
T Consensus 4 ~~~k~~lItGas-~giG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 4 LNGKVAIITGAS-SGIGRAAAKLFAREGA-KVVVGARRQAEL-DQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 346678766654 555544 345676 699999999887 66666665544 246778888654321 111011
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|.+|.+.-
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 11247899998653
No 427
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=58.26 E-value=1e+02 Score=28.51 Aligned_cols=96 Identities=18% Similarity=0.067 Sum_probs=51.0
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDG 230 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~ 230 (317)
.++.+||=.|+ |.|.+++.+++ .|+ +|++++.+++.. +.+++ +|...-+.....|..+.+.... ..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~-~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKV-AWLKE----LGFDAVFNYKTVSLEEALKEAA-----PD 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHH----cCCCEEEeCCCccHHHHHHHHC-----CC
Confidence 35778876653 34444444444 566 699999998886 77754 4653211111123333332221 24
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
.+|+|+ |. . +. ..+.... +.|+++|.++..
T Consensus 211 gvd~vl-d~--~-g~--~~~~~~~--~~l~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-DN--V-GG--EFSSTVL--SHMNDFGRVAVC 240 (329)
T ss_pred CcEEEE-EC--C-CH--HHHHHHH--HhhccCCEEEEE
Confidence 689887 42 1 11 2222222 368999998753
No 428
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=58.18 E-value=65 Score=30.14 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 155 RPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 155 ~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
++.+||-.+||. |..++.+++ +|+.+|++++.+++.. +.+++ .|.. .++..+-..+ .... .....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~~----~g~~---~vi~~~~~~~-~~~~---~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVARA----MGAD---ETVNLARDPL-AAYA---ADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH----cCCC---EEEcCCchhh-hhhh---ccCCCc
Confidence 678888877653 334444443 5765799999998886 65533 3432 1222211111 1110 112458
Q ss_pred cEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 233 DYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 233 DlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
|+|+-.- .. ...++.+. +.|+++|.++..
T Consensus 233 d~vld~~--g~---~~~~~~~~--~~L~~~G~~v~~ 261 (339)
T cd08232 233 DVVFEAS--GA---PAALASAL--RVVRPGGTVVQV 261 (339)
T ss_pred cEEEECC--CC---HHHHHHHH--HHHhcCCEEEEE
Confidence 9988642 11 11222222 257888888754
No 429
>PRK05866 short chain dehydrogenase; Provisional
Probab=57.99 E-value=1.1e+02 Score=28.55 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-HhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~~ 227 (317)
.++++|=.|++ |.+|.+ +++.|. +|++++.+++.+ +.+.+.+...+ .++.++.+|+.+... . ......
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G~-~Vi~~~R~~~~l-~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRGA-TVVAVARREDLL-DAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788877764 455544 345665 699999999887 66666655433 246778888654221 1 110001
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+++.+.
T Consensus 114 ~~g~id~li~~A 125 (293)
T PRK05866 114 RIGGVDILINNA 125 (293)
T ss_pred HcCCCCEEEECC
Confidence 124789999875
No 430
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=57.78 E-value=98 Score=29.23 Aligned_cols=81 Identities=7% Similarity=0.076 Sum_probs=43.1
Q ss_pred CCCCeEEEECCCcchH-HHH--HHHcCCCEEEEEeCCH---HHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcC
Q 021116 154 LRPGRWLDLYSGTGSV-GIE--AISRGCSEVHFVEMDP---WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l-~Ie--aas~Ga~~V~aVDin~---~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
..++++|=+|+| |.- ++. ++..|+.+|+.++.+. +.. +.+.+.+...+ ..+.+...|+.+... .. .
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a-~~l~~~l~~~~--~~~~~~~~d~~~~~~-~~---~ 195 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERA-EQTAEKIKQEV--PECIVNVYDLNDTEK-LK---A 195 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHH-HHHHHHHhhcC--CCceeEEechhhhhH-HH---h
Confidence 357789888886 422 222 3457888899999986 333 33334443222 123344455543211 00 0
Q ss_pred CCCCccEEEECCCCC
Q 021116 228 KDGPFDYMSVTPPYT 242 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~ 242 (317)
.-..+|+||..-|-+
T Consensus 196 ~~~~~DilINaTp~G 210 (289)
T PRK12548 196 EIASSDILVNATLVG 210 (289)
T ss_pred hhccCCEEEEeCCCC
Confidence 013579999766544
No 431
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=57.49 E-value=96 Score=27.99 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=51.1
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|++.| +|.+ ++..|+ +|+.++.+++.+ +.+.++++..+ .++.++..|+.+... ...+..
T Consensus 8 ~~~k~~lItGa~~~-iG~~ia~~l~~~G~-~vv~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (265)
T PRK07097 8 LKGKIALITGASYG-IGFAIAKAYAKAGA-TIVFNDINQELV-DKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIE 82 (265)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 45778888887654 4433 455676 589999999887 66666666544 247788888754321 111111
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
..-+..|.++.+.-+
T Consensus 83 ~~~~~id~li~~ag~ 97 (265)
T PRK07097 83 KEVGVIDILVNNAGI 97 (265)
T ss_pred HhCCCCCEEEECCCC
Confidence 112568999986543
No 432
>PRK07904 short chain dehydrogenase; Provisional
Probab=57.18 E-value=38 Score=30.77 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=48.3
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHH-HHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWV-VSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~a-l~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
.+++||=.|| +|.+|.++ ++.|..+|+.++.++.. + +.+.+.++..+. .+++++..|+.+... ......
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~-~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRR-DAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhH-HHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 4667888887 45555543 35554579999998764 5 544455554442 247888888754321 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..+..|+++.+..
T Consensus 84 -~~g~id~li~~ag 96 (253)
T PRK07904 84 -AGGDVDVAIVAFG 96 (253)
T ss_pred -hcCCCCEEEEeee
Confidence 1257898887643
No 433
>PRK08703 short chain dehydrogenase; Provisional
Probab=56.94 E-value=1.2e+02 Score=26.75 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=37.6
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
.+++++|=.|| +|.+|.++ ++.|. +|+.++.++..+ +.....+...+. .++.++..|+
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~~-~~~~~~~~D~ 65 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKL-EKVYDAIVEAGH-PEPFAIRFDL 65 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHH-HHHHHHHHHcCC-CCcceEEeee
Confidence 45788999985 56666553 45666 699999999887 666555544332 2245566665
No 434
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.70 E-value=1.4e+02 Score=26.23 Aligned_cols=81 Identities=16% Similarity=0.059 Sum_probs=48.3
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-HhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~~ 227 (317)
.++++|=.|+ +|.+|..+ +++|. +|++++.++..+ ..+...++..+ .++.++.+|+.+... . +.....
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDA-AATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678886664 66666643 45675 699999998776 55555554433 347788888754321 1 000000
Q ss_pred CCCCccEEEECCC
Q 021116 228 KDGPFDYMSVTPP 240 (317)
Q Consensus 228 ~~~~fDlV~~dPP 240 (317)
.-+.+|.||.++.
T Consensus 80 ~~~~~d~vi~~ag 92 (251)
T PRK12826 80 DFGRLDILVANAG 92 (251)
T ss_pred HhCCCCEEEECCC
Confidence 1146899998764
No 435
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=56.59 E-value=1.2e+02 Score=27.44 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=47.5
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~ 226 (317)
..++++|=.|++. .+|.+ +++.|+ +|+.++.+++.. +.+.+.++..+ .++.++.+|+.+.. .......
T Consensus 8 ~~~k~vlVtGas~-giG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 8 LKGKVAVITGGGG-VLGGAMAKELARAGA-KVAILDRNQEKA-EAVVAEIKAAG--GEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred cCCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHH
Confidence 3567787777544 44443 345676 699999998776 65555554433 34777888875432 1111111
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|++|.+.
T Consensus 83 ~~~g~id~li~~a 95 (278)
T PRK08277 83 EDFGPCDILINGA 95 (278)
T ss_pred HHcCCCCEEEECC
Confidence 1125789999764
No 436
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=56.17 E-value=78 Score=28.47 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=44.2
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcCCCC
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVGKDG 230 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~~~~ 230 (317)
++|=.|++ |.+|.+ ++.+|+ +|+.++.++..+ +.+.+.++..+ ++.++..|+.+.. ....+.....+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGA-RVVISSRNEENL-EKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45556654 445544 345676 699999999887 66666554432 3677888864321 11110001125
Q ss_pred CccEEEECC
Q 021116 231 PFDYMSVTP 239 (317)
Q Consensus 231 ~fDlV~~dP 239 (317)
..|++|.+.
T Consensus 76 ~id~li~na 84 (259)
T PRK08340 76 GIDALVWNA 84 (259)
T ss_pred CCCEEEECC
Confidence 789999764
No 437
>PRK08589 short chain dehydrogenase; Validated
Probab=56.12 E-value=98 Score=28.20 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=46.3
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+.. .+|.+ +++.|+ +|+.++.+ ..+ +...+.++..+ .++.++..|+.+... ...+..
T Consensus 4 l~~k~vlItGas~-gIG~aia~~l~~~G~-~vi~~~r~-~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 4 LENKVAVITGAST-GIGQASAIALAQEGA-YVLAVDIA-EAV-SETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCc-HHH-HHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHH
Confidence 3567788777654 44544 445676 69999999 444 44444454433 347778888754321 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|++|.+.-
T Consensus 78 ~~~g~id~li~~Ag 91 (272)
T PRK08589 78 EQFGRVDVLFNNAG 91 (272)
T ss_pred HHcCCcCEEEECCC
Confidence 11256899998763
No 438
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=56.09 E-value=11 Score=35.98 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=37.1
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCc-cEEEECCCCCCc-------c----------HHHHHHHHHHcCCc-CCCeEEEEE
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPF-DYMSVTPPYTAV-------D----------YEVLMAQISKSALV-GKDSFIVVE 268 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~f-DlV~~dPPy~~~-------~----------~~~~l~~L~~~~lL-kpgG~ivv~ 268 (317)
+++.++|..+.+... .+= |+|++||||..- . ...+.+.+. -| ...++.++.
T Consensus 157 ~~i~~~df~~v~~~a-------~~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~---~l~~~~~i~~~~ 226 (274)
T COG0338 157 ATIENGDFEEVLADA-------DSGDDFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLK---ELEGKRGISVLD 226 (274)
T ss_pred CeEEcCCHHHHHhhc-------cCCCcEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHH---hccccceEEEec
Confidence 678999988887543 334 899999999641 0 123333333 34 777888888
Q ss_pred eCCCCC
Q 021116 269 YPLRTD 274 (317)
Q Consensus 269 ~~~~~~ 274 (317)
++....
T Consensus 227 sn~~~~ 232 (274)
T COG0338 227 SNSDTE 232 (274)
T ss_pred CccchH
Confidence 776533
No 439
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=56.08 E-value=94 Score=29.56 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=48.8
Q ss_pred CCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeC---CHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEM---DPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDi---n~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~ 227 (317)
.+.+||=.|| |.+|..+ + ..|+ +|++++. ++... +.++ .+|.. .+.....|..+ ..
T Consensus 172 ~g~~vlI~G~--G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~-~~~~----~~Ga~-~v~~~~~~~~~-~~------- 234 (355)
T cd08230 172 NPRRALVLGA--GPIGLLAALLLRLRGF-EVYVLNRRDPPDPKA-DIVE----ELGAT-YVNSSKTPVAE-VK------- 234 (355)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-eEEEEecCCCCHHHH-HHHH----HcCCE-EecCCccchhh-hh-------
Confidence 5788887765 5666543 3 3576 6999987 67676 6654 34542 11111112211 10
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
....+|+||--- +. ...+.... +.++++|.+++.-
T Consensus 235 ~~~~~d~vid~~----g~-~~~~~~~~--~~l~~~G~~v~~G 269 (355)
T cd08230 235 LVGEFDLIIEAT----GV-PPLAFEAL--PALAPNGVVILFG 269 (355)
T ss_pred hcCCCCEEEECc----CC-HHHHHHHH--HHccCCcEEEEEe
Confidence 124689887542 11 11233322 3689999887643
No 440
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=56.07 E-value=44 Score=30.90 Aligned_cols=80 Identities=10% Similarity=-0.068 Sum_probs=43.6
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHHhCCCC-ceEEEE-ecHHHHHHHHhhhcCCCCCccEEEE--CCCCCCcc---------
Q 021116 179 SEVHFVEMDPWVVSNVLIPNLEWTGFLD-VSSIHT-VRVETFLERAEQFVGKDGPFDYMSV--TPPYTAVD--------- 245 (317)
Q Consensus 179 ~~V~aVDin~~al~~~ar~N~~~~gl~~-~v~ii~-gD~~~~l~~~~~~~~~~~~fDlV~~--dPPy~~~~--------- 245 (317)
.+++.+|++++.+ +....-+++.-... ..++.. .|..+.+ ...|+|+. ..|...+.
T Consensus 27 ~el~L~D~~~~~l-~~~~~dl~~~~~~~~~~~i~~~~d~~~~~----------~~aDiVv~t~~~~~~~g~~r~~~~~~n 95 (263)
T cd00650 27 IELVLYDIDEEKL-KGVAMDLQDAVEPLADIKVSITDDPYEAF----------KDADVVIITAGVGRKPGMGRLDLLKRN 95 (263)
T ss_pred eEEEEEeCCcccc-hHHHHHHHHhhhhccCcEEEECCchHHHh----------CCCCEEEECCCCCCCcCCCHHHHHHHH
Confidence 5899999998776 55555554432211 123332 3433322 45799997 33322221
Q ss_pred ---HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 ---YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 ---~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++.+.+. -..|++++++..++-
T Consensus 96 ~~i~~~i~~~i~---~~~p~a~~i~~tNP~ 122 (263)
T cd00650 96 VPIVKEIGDNIE---KYSPDAWIIVVSNPV 122 (263)
T ss_pred HHHHHHHHHHHH---HHCCCeEEEEecCcH
Confidence 233333443 357999988776643
No 441
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=56.01 E-value=78 Score=29.24 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=40.0
Q ss_pred EEEECCCcchHHHHHH----HcCCCEEEEEeCCHH-------------------HHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 159 WLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~-------------------al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
||=+ |.|++|-+.+ ..|.++++.+|.|.- -. +.|+++++..+-.-+++.+..++
T Consensus 2 Vlvv--G~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka-~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 2 VLLV--GAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKS-EVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred EEEE--CCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHH-HHHHHHHHHHCCCCEEEEEeccC
Confidence 4445 4556666543 468888999987642 22 44555665554333455666655
Q ss_pred ---HHHHHHHhhhcCCCCCccEEEEC
Q 021116 216 ---ETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 216 ---~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
.++...+ -..||+|+..
T Consensus 79 ~~~~~~~~~f------~~~~DvVi~a 98 (234)
T cd01484 79 GPEQDFNDTF------FEQFHIIVNA 98 (234)
T ss_pred ChhhhchHHH------HhCCCEEEEC
Confidence 2221112 1579999963
No 442
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=55.89 E-value=25 Score=34.99 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHhHHHh--CCCCceEEEEecHHHHHHHHhhhcCCCCCccEEE-ECCC-CCC-ccHHHHHHHHHHcCCcCCCeEEEEEeC
Q 021116 196 IPNLEWT--GFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS-VTPP-YTA-VDYEVLMAQISKSALVGKDSFIVVEYP 270 (317)
Q Consensus 196 r~N~~~~--gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~-~dPP-y~~-~~~~~~l~~L~~~~lLkpgG~ivv~~~ 270 (317)
++|.+.. ++ ++++++++++.+++... .++++|.++ +|-+ |.. ..+.+.++.|. +.++|||+|+.-..
T Consensus 264 ~e~f~~lr~~~-drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~--~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 264 PENFEALRARL-DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELA--RTARPGARVLWRSA 335 (380)
T ss_pred HhHHHHHhcCC-CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHH--HHhCCCCEEEEeeC
Confidence 4454443 44 78999999999998764 257899666 5643 211 24556666665 47899999998765
Q ss_pred CCC
Q 021116 271 LRT 273 (317)
Q Consensus 271 ~~~ 273 (317)
...
T Consensus 336 ~~~ 338 (380)
T PF11899_consen 336 AVP 338 (380)
T ss_pred CCC
Confidence 443
No 443
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=55.80 E-value=65 Score=31.84 Aligned_cols=77 Identities=17% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCCCeEEEECCCc-chHHHH-HHHcCCCEEEEEeCC-------------------HHHHHHHHHHhHHHhCCCCceEEEE
Q 021116 154 LRPGRWLDLYSGT-GSVGIE-AISRGCSEVHFVEMD-------------------PWVVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ie-aas~Ga~~V~aVDin-------------------~~al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+.+.+||=+|||. |...+. ++..|..+++.+|-| ..-+ +.+++.++..+-.-+++.+.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka-~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKV-EVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHH-HHHHHHHHHHCCCCeeEEee
Confidence 4578999998873 333333 345688899999988 1222 45566665554322355555
Q ss_pred ecHHH-HHHHHhhhcCCCCCccEEEE
Q 021116 213 VRVET-FLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 213 gD~~~-~l~~~~~~~~~~~~fDlV~~ 237 (317)
..+.. ....+. ..||+|+.
T Consensus 118 ~~i~~~~~~~~~------~~~DlVid 137 (370)
T PRK05600 118 ERLTAENAVELL------NGVDLVLD 137 (370)
T ss_pred eecCHHHHHHHH------hCCCEEEE
Confidence 43322 111111 46899885
No 444
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=55.65 E-value=1e+02 Score=32.51 Aligned_cols=83 Identities=14% Similarity=-0.002 Sum_probs=58.0
Q ss_pred CCCCeEEEECCCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHh-CCCCceEEEEecHHHHHHHHhhhcCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWT-GFLDVSSIHTVRVETFLERAEQFVGK 228 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~-gl~~~v~ii~gD~~~~l~~~~~~~~~ 228 (317)
..+++||=-| |+|++|-+.. +.+.++++..|.|+..+ .....+++.. + ..++.++-||+.+...-..- ..
T Consensus 248 ~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~-~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~--~~ 322 (588)
T COG1086 248 LTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKL-YLIDMELREKFP-ELKLRFYIGDVRDRDRVERA--ME 322 (588)
T ss_pred cCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHH-HHHHHHHHhhCC-CcceEEEecccccHHHHHHH--Hh
Confidence 4578888877 6789998754 45788999999999998 7777776543 3 34578888998765322111 12
Q ss_pred CCCccEEEECCCC
Q 021116 229 DGPFDYMSVTPPY 241 (317)
Q Consensus 229 ~~~fDlV~~dPPy 241 (317)
+.+.|+||--.-|
T Consensus 323 ~~kvd~VfHAAA~ 335 (588)
T COG1086 323 GHKVDIVFHAAAL 335 (588)
T ss_pred cCCCceEEEhhhh
Confidence 3568999975444
No 445
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=55.32 E-value=2e+02 Score=27.70 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=24.4
Q ss_pred CCCeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHH
Q 021116 155 RPGRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVV 191 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al 191 (317)
+..+|.=+|+|+=..++. ++..|...++.+|++++.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP 43 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh
Confidence 346788898876333332 3445654699999999843
No 446
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=55.32 E-value=1.1e+02 Score=28.75 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=47.8
Q ss_pred CeEEEECCCcchHHHH----HHHcCC-CEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCC
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGC-SEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGP 231 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga-~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~ 231 (317)
.+|.=+|+|. +|.. +...|. .+|+++|.+++.+ +.+++ .|..+ . ...+..+.+ ..
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~-~~a~~----~g~~~--~-~~~~~~~~~----------~~ 66 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETR-ARARE----LGLGD--R-VTTSAAEAV----------KG 66 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHh----CCCCc--e-ecCCHHHHh----------cC
Confidence 4676676554 4432 333453 3799999999887 66542 34321 1 122332222 45
Q ss_pred ccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEE
Q 021116 232 FDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVV 267 (317)
Q Consensus 232 fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv 267 (317)
.|+||+.-|-. .....++.+. ..++++++++.
T Consensus 67 aDvViiavp~~--~~~~v~~~l~--~~l~~~~iv~d 98 (307)
T PRK07502 67 ADLVILCVPVG--ASGAVAAEIA--PHLKPGAIVTD 98 (307)
T ss_pred CCEEEECCCHH--HHHHHHHHHH--hhCCCCCEEEe
Confidence 79999876532 2344455443 35677776543
No 447
>PRK07576 short chain dehydrogenase; Provisional
Probab=55.31 E-value=1.1e+02 Score=27.79 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=47.3
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HH-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ER-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~-~~~~~ 226 (317)
..++++|=.|+ +|.+|.+ ++..|+ +|++++.+++.+ +...+.+...+ .++.++..|+.+.- .. .....
T Consensus 7 ~~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 7 FAGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKV-DAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 45778888874 5566654 345676 699999998776 55544444333 23567777775321 11 11000
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
...+..|++|.+.
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 1124689999765
No 448
>PRK07109 short chain dehydrogenase; Provisional
Probab=55.17 E-value=1.3e+02 Score=28.66 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=50.5
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.|+ +|.+|.++ ++.|+ +|+.++.+++.+ +...+.++..|. ++.++.+|+.+... ......
T Consensus 6 l~~k~vlITGa-s~gIG~~la~~la~~G~-~Vvl~~R~~~~l-~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 6 IGRQVVVITGA-SAGVGRATARAFARRGA-KVVLLARGEEGL-EALAAEIRAAGG--EALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHH
Confidence 35667777775 45555543 45676 699999999887 777666665553 47778888654321 111011
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|++|.+.-
T Consensus 81 ~~~g~iD~lInnAg 94 (334)
T PRK07109 81 EELGPIDTWVNNAM 94 (334)
T ss_pred HHCCCCCEEEECCC
Confidence 11257899998754
No 449
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=55.02 E-value=45 Score=30.94 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCccHHH
Q 021116 170 GIEAISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVDYEV 248 (317)
Q Consensus 170 ~Ieaas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~~~~ 248 (317)
+..+.+.| .-+|+++|.++..+ +.|+ ..|+.+. ...+ .+.+ ..+|+||+.-|-. ...+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~-~~a~----~~g~~~~---~~~~-~~~~----------~~~DlvvlavP~~--~~~~ 60 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETL-EAAL----ELGIIDE---ASTD-IEAV----------EDADLVVLAVPVS--AIED 60 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHH-HHHH----HTTSSSE---EESH-HHHG----------GCCSEEEE-S-HH--HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHH-HHHH----HCCCeee---ccCC-HhHh----------cCCCEEEEcCCHH--HHHH
Confidence 44444556 35899999999987 6664 3465442 2222 2222 4579888865532 3445
Q ss_pred HHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 249 LMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 249 ~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+++.+. +.+++|+++.=.++..
T Consensus 61 ~l~~~~--~~~~~~~iv~Dv~SvK 82 (258)
T PF02153_consen 61 VLEEIA--PYLKPGAIVTDVGSVK 82 (258)
T ss_dssp HHHHHH--CGS-TTSEEEE--S-C
T ss_pred HHHHhh--hhcCCCcEEEEeCCCC
Confidence 555543 3566666555444433
No 450
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=54.31 E-value=37 Score=32.70 Aligned_cols=74 Identities=14% Similarity=-0.030 Sum_probs=39.6
Q ss_pred CcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceE----EEEecHHHHHHHHhhhcCCCCCccEEE
Q 021116 165 GTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSS----IHTVRVETFLERAEQFVGKDGPFDYMS 236 (317)
Q Consensus 165 GtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~----ii~gD~~~~l~~~~~~~~~~~~fDlV~ 236 (317)
|+|++|-++. +.+..+++.+|.|+..+ -..++.++...-.++++ .+.+|+.+...-.. ......+|+||
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l-~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~--~~~~~~pdiVf 82 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKL-YELERELRSRFPDPKVRFEIVPVIGDVRDKERLNR--IFEEYKPDIVF 82 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHH-HHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHH--HTT--T-SEEE
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHH-HHHHHHHhhcccccCcccccCceeecccCHHHHHH--HHhhcCCCEEE
Confidence 6889998764 34667899999999998 66666664222112243 34678766432111 11235789999
Q ss_pred ECCCC
Q 021116 237 VTPPY 241 (317)
Q Consensus 237 ~dPPy 241 (317)
--.-|
T Consensus 83 HaAA~ 87 (293)
T PF02719_consen 83 HAAAL 87 (293)
T ss_dssp E----
T ss_pred EChhc
Confidence 76544
No 451
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.88 E-value=1e+02 Score=29.01 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 177 GCSEVHFVEMDPW---VVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 177 Ga~~V~aVDin~~---al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
|..+|..|+.|+. +. +.++...+..|+. +... .+..++...+.. -..+|+|++|-|
T Consensus 223 g~~~V~li~~D~~r~~a~-eql~~~~~~~~~p--~~~~-~~~~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 223 GNKKVALITTDTYRIGAV-EQLKTYAKILGVP--VKVA-RDPKELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred CCCeEEEEECCccchhHH-HHHHHHHHHhCCc--eecc-CCHHHHHHHHHH----ccCCCEEEEeCC
Confidence 4457999999884 34 5555666666653 2222 222222222221 145899999964
No 452
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=53.80 E-value=1.9e+02 Score=26.93 Aligned_cols=93 Identities=18% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe----cHHHHHHHHhhhc
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV----RVETFLERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g----D~~~~l~~~~~~~ 226 (317)
.++.+||=.|+ |.|.+++.+++ +|+ +|++++.+++.. +.+++ +|.+. ++.. +..+.....
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~-~~~~~----lGa~~---vi~~~~~~~~~~~~~~~---- 203 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKV-AYLKK----LGFDV---AFNYKTVKSLEETLKKA---- 203 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHH----cCCCE---EEeccccccHHHHHHHh----
Confidence 35788887763 34455555444 465 699999998886 77643 46532 2221 222322222
Q ss_pred CCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 227 GKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
....+|+|| |.- + + . .++... +.|+++|.++..
T Consensus 204 -~~~gvdvv~-d~~-G-~--~-~~~~~~--~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYF-DNV-G-G--E-FSNTVI--GQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEE-ECC-C-H--H-HHHHHH--HHhCcCcEEEEe
Confidence 124689887 421 1 1 1 222222 268999999864
No 453
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=53.51 E-value=72 Score=29.49 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=43.3
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCCHH-------------------HHHHHHHHhHHHhCCCCceEEEE
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSIHT 212 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~~-------------------al~~~ar~N~~~~gl~~~v~ii~ 212 (317)
+...+|+=+||| .|+-.+. ++..|..+++.+|.|.- -+ +.++++++..+-.-+++.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka-~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKV-ESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHH-HHHHHHHHHHCCCCEEEEEe
Confidence 457899999885 3433333 34568888999976532 22 44556665554332345555
Q ss_pred ecHHHH-HHHHhhhcCCCCCccEEEE
Q 021116 213 VRVETF-LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 213 gD~~~~-l~~~~~~~~~~~~fDlV~~ 237 (317)
..+... ...+ -..||+||.
T Consensus 109 ~~i~~~~~~~~------~~~~DiVi~ 128 (245)
T PRK05690 109 ARLDDDELAAL------IAGHDLVLD 128 (245)
T ss_pred ccCCHHHHHHH------HhcCCEEEe
Confidence 443221 1111 156999985
No 454
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.11 E-value=1.7e+02 Score=27.40 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred CeEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHHHh-CC----------CCceEEEEecHHHHHHHHh
Q 021116 157 GRWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLEWT-GF----------LDVSSIHTVRVETFLERAE 223 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~~~-gl----------~~~v~ii~gD~~~~l~~~~ 223 (317)
.+|.=+|+|.=..++. +++.|. +|+.+|.+++.+ +.+++.++.. +. ..+++ ...|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGAL-ERARGVIERALGVYAPLGIASAGMGRIR-MEAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHH-HHHHHHHHHHHHHhhhcccHHHHhhceE-EeCCHHHHh----
Confidence 3455566654333332 334554 699999999998 7776643221 11 01122 123333222
Q ss_pred hhcCCCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 224 QFVGKDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 224 ~~~~~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...|+||..-|-.......++..+.. .++++.+|+..+
T Consensus 78 ------~~aDlVi~av~~~~~~~~~v~~~l~~--~~~~~~ii~s~t 115 (311)
T PRK06130 78 ------SGADLVIEAVPEKLELKRDVFARLDG--LCDPDTIFATNT 115 (311)
T ss_pred ------ccCCEEEEeccCcHHHHHHHHHHHHH--hCCCCcEEEECC
Confidence 45799998754322223455555542 456665544333
No 455
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.56 E-value=1.8e+02 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHH-cCCCEEEEEeCCHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGT-GSVGIEAIS-RGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 154 ~~~~rVLDlgcGt-G~l~Ieaas-~Ga~~V~aVDin~~al~~~ar 196 (317)
.++.+||=.|+|. |..++.+++ +|+..|++++.+++.. +.++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~ 204 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAK 204 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHH
Confidence 4577888776532 333333333 5765589999888776 6664
No 456
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=52.54 E-value=50 Score=31.67 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=42.0
Q ss_pred EEEECCCcchHHHHHH----HcCCCEEEEEeCCHH-------------------HHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 159 WLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~-------------------al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
||=+| .|++|.+.+ ..|.++++.+|.|.- -+ +.|.+.++..+-.-+++.+..++
T Consensus 2 VlVVG--aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KA-evaa~~l~~~np~v~I~~~~~~i 78 (291)
T cd01488 2 ILVIG--AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKA-EVAAKFVNDRVPGVNVTPHFGKI 78 (291)
T ss_pred EEEEC--CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHH-HHHHHHHHHHCCCCEEEEEeccc
Confidence 45554 556666643 468889999997632 22 45566665554333466666666
Q ss_pred HHHHHHHhhhcCCCCCccEEEE
Q 021116 216 ETFLERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 216 ~~~l~~~~~~~~~~~~fDlV~~ 237 (317)
.+....+- ..||+|+.
T Consensus 79 ~~~~~~f~------~~fdvVi~ 94 (291)
T cd01488 79 QDKDEEFY------RQFNIIIC 94 (291)
T ss_pred CchhHHHh------cCCCEEEE
Confidence 54432221 57999997
No 457
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=52.23 E-value=11 Score=36.05 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=21.7
Q ss_pred EEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCCcc
Q 021116 209 SIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTAVD 245 (317)
Q Consensus 209 ~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~~~ 245 (317)
++.+.|+...... =++|++.+||||...+
T Consensus 189 kv~qeDaN~Likk--------I~~DilYLDpPYN~rq 217 (330)
T COG3392 189 KVYQEDANELIKK--------ISGDILYLDPPYNARQ 217 (330)
T ss_pred HHHHhhHHHHHHh--------cCCCEEEeCCCccccc
Confidence 4677788776654 3579999999998653
No 458
>PRK09186 flagellin modification protein A; Provisional
Probab=52.15 E-value=1.2e+02 Score=26.92 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=46.6
Q ss_pred CCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~ 227 (317)
.++++|=.|+ +|.+|.. +++.|. +|+.++.+++.+ +.+...+....-.+.+.++.+|+.+.- ....+...
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~-~v~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGG-IVIAADIDKEAL-NELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEecChHHH-HHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 4677887776 4455554 345565 699999998877 666555532211233567778875431 11111111
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
.-+..|+|+.+.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 124589999764
No 459
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.04 E-value=1.2e+02 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=27.2
Q ss_pred eEEEECCCcchHHHH--HHHcCCCEEEEEeCCHHHHHHHHHHhHH
Q 021116 158 RWLDLYSGTGSVGIE--AISRGCSEVHFVEMDPWVVSNVLIPNLE 200 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie--aas~Ga~~V~aVDin~~al~~~ar~N~~ 200 (317)
+|-=+|+|+=..++. ++..|. +|+.+|.+++.+ +.+++.++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~-~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELA-TAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHH-HHHHHHHH
Confidence 566677664333332 445665 699999999998 77665533
No 460
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=51.88 E-value=1.5e+02 Score=26.42 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
..++++|=.| |+|.+|..+ ++.|+ +|+.++.++..+ +.+.+.++..|. ++.++..|+.+... ......
T Consensus 8 ~~~k~vlItG-a~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 8 LTGRRALVTG-SSQGIGYALAEGLAQAGA-EVILNGRDPAKL-AAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCCEEEEEC-CcchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHH
Confidence 4578888887 466677653 34676 699999998887 666666654442 36777777754211 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|.+|.+.-
T Consensus 83 ~~~~~~d~li~~ag 96 (255)
T PRK07523 83 AEIGPIDILVNNAG 96 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 11256899998753
No 461
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.89 E-value=1.8e+02 Score=25.69 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~ 226 (317)
.+++++|=.|| +|.+|.. +++.|+ +|++++.+.+.+ +...+++. . ..++.++.+|+.+... . .....
T Consensus 3 ~~~k~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 3 LAGRVAIVTGA-GSGIGRATAKLFAREGA-RVVVADRDAEAA-ERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CCCcEEEEeCC-CchHHHHHHHHHHHCCC-eEEEecCCHHHH-HHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 45677888876 4555554 345675 699999998876 55555554 2 2457888888754321 1 11000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+.+|.|+.+..
T Consensus 77 ~~~~~id~vi~~ag 90 (252)
T PRK06138 77 ARWGRLDVLVNNAG 90 (252)
T ss_pred HHcCCCCEEEECCC
Confidence 11247899998654
No 462
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.77 E-value=1.5e+02 Score=26.24 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=45.8
Q ss_pred CeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCc
Q 021116 157 GRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPF 232 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~f 232 (317)
+++|=.|+ +|.+|..+ ++.|+ +|+++..++... +..++.....+. ++.++.+|+.+....... .....
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~---~~~~i 74 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGH-NVIAGVQIAPQV-TALRAEAARRGL--ALRVEKLDLTDAIDRAQA---AEWDV 74 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcCC--cceEEEeeCCCHHHHHHH---hcCCC
Confidence 46777775 55666543 34565 699999988776 555554444443 377888887654321110 12478
Q ss_pred cEEEECC
Q 021116 233 DYMSVTP 239 (317)
Q Consensus 233 DlV~~dP 239 (317)
|+||.+.
T Consensus 75 d~vi~~a 81 (257)
T PRK09291 75 DVLLNNA 81 (257)
T ss_pred CEEEECC
Confidence 9999864
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=50.68 E-value=1.2e+02 Score=27.42 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=45.5
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~ 226 (317)
..++++|=.|+ +|.+|.+ +++.|+ +|+.++.+++.+ +.+.+- .+ .++.++.+|+.+...- .....
T Consensus 4 ~~~k~vlItGa-s~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 4 LAGKVAIVTGG-ATLIGAAVARALVAAGA-RVAIVDIDADNG-AAVAAS---LG--ERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---hC--CeeEEEEecCCCHHHHHHHHHHHH
Confidence 35678888875 4455544 345676 799999998765 433322 22 3477888887543211 11000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 76 ~~~g~id~lv~~ag 89 (261)
T PRK08265 76 ARFGRVDILVNLAC 89 (261)
T ss_pred HHhCCCCEEEECCC
Confidence 11246899998753
No 464
>PRK07326 short chain dehydrogenase; Provisional
Probab=50.31 E-value=1.7e+02 Score=25.49 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=47.3
Q ss_pred CCCeEEEECCCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~ 227 (317)
.+.++|=.| |+|.+|..++ ..|. +|++++.++... +.+.+.+... .+++++.+|+.+... .+.....
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGY-KVAITARDQKEL-EEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVA 78 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCC-EEEEeeCCHHHH-HHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467888887 4777776543 4566 699999999876 5555554322 347778888654321 1110000
Q ss_pred CCCCccEEEECC
Q 021116 228 KDGPFDYMSVTP 239 (317)
Q Consensus 228 ~~~~fDlV~~dP 239 (317)
..+..|.||...
T Consensus 79 ~~~~~d~vi~~a 90 (237)
T PRK07326 79 AFGGLDVLIANA 90 (237)
T ss_pred HcCCCCEEEECC
Confidence 124689999754
No 465
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=50.20 E-value=76 Score=30.47 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCC
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPL 271 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~ 271 (317)
..+|+||+.. ...+.++.++.+. +.++++..|++-.+.
T Consensus 66 ~~~Dlviv~v--Ka~q~~~al~~l~--~~~~~~t~vl~lqNG 103 (307)
T COG1893 66 GPADLVIVTV--KAYQLEEALPSLA--PLLGPNTVVLFLQNG 103 (307)
T ss_pred CCCCEEEEEe--ccccHHHHHHHhh--hcCCCCcEEEEEeCC
Confidence 5799999975 3346677777776 478888877766553
No 466
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=50.06 E-value=67 Score=31.09 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=40.3
Q ss_pred EEEECCCcchHHHHHH----HcCCCEEEEEeCCHH-------------------HHHHHHHHhHHHhCCCCceEEEEecH
Q 021116 159 WLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSIHTVRV 215 (317)
Q Consensus 159 VLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~-------------------al~~~ar~N~~~~gl~~~v~ii~gD~ 215 (317)
||=+| .|++|.|.+ ..|.++++.+|.|.- -. +.|.+.++..+-.-+++.+..++
T Consensus 2 VlIVG--aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Ka-evaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 2 VLVVG--AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKA-QVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred EEEEC--CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHH-HHHHHHHHHHCCCCeEEEEeccC
Confidence 45555 467777644 468889999996532 22 45566666554333455566555
Q ss_pred HHH--HHHHhhhcCCCCCccEEEE
Q 021116 216 ETF--LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 216 ~~~--l~~~~~~~~~~~~fDlV~~ 237 (317)
.+. ...+ -..||+|+.
T Consensus 79 ~~~~~~~~f------~~~~DvVv~ 96 (312)
T cd01489 79 KDPDFNVEF------FKQFDLVFN 96 (312)
T ss_pred CCccchHHH------HhcCCEEEE
Confidence 431 1111 157999996
No 467
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=50.02 E-value=73 Score=33.48 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=56.2
Q ss_pred CCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHH--HHHHhhhcCCCCCccEEEE
Q 021116 164 SGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETF--LERAEQFVGKDGPFDYMSV 237 (317)
Q Consensus 164 cGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~--l~~~~~~~~~~~~fDlV~~ 237 (317)
||.|.+|...+ +.|. +++.+|.|++.+ +.+++ .| ..++.||+.+. ++.. .-++.|.+++
T Consensus 406 ~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v-~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A~~vv~ 470 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKM-RITVLERDISAV-NLMRK----YG----YKVYYGDATQLELLRAA-----GAEKAEAIVI 470 (601)
T ss_pred ecCchHHHHHHHHHHhCCC-CEEEEECCHHHH-HHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccCCEEEE
Confidence 78888887643 2454 599999999998 77653 33 45788998754 2222 1256888887
Q ss_pred CCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 238 TPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 238 dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
--+ +.+..+..+...+.+.|+..+++-....+.
T Consensus 471 ~~~----d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 471 TCN----EPEDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred EeC----CHHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 432 223333222222346788888877665443
No 468
>PRK07814 short chain dehydrogenase; Provisional
Probab=49.91 E-value=1.7e+02 Score=26.41 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=49.5
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~ 226 (317)
.+++++|=.|+ +|.+|.. ++++|+ +|+.++.+++.+ +.+.+.++..+ .++.++..|+.+...- +....
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQL-DEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 35678888885 5666654 345777 799999998876 65555554333 3477888886543211 11000
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+.+|+||.+.
T Consensus 83 ~~~~~id~vi~~A 95 (263)
T PRK07814 83 EAFGRLDIVVNNV 95 (263)
T ss_pred HHcCCCCEEEECC
Confidence 0114689999764
No 469
>PRK08303 short chain dehydrogenase; Provisional
Probab=49.80 E-value=1.1e+02 Score=28.91 Aligned_cols=81 Identities=15% Similarity=0.015 Sum_probs=45.4
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCH----------HHHHHHHHHhHHHhCCCCceEEEEecHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDP----------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFL 219 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~----------~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l 219 (317)
..++++|-.|++.| +|.+ +++.|+ +|+.++.+. +.+ +.+.+.++..+ .++.+++.|+.+..
T Consensus 6 l~~k~~lITGgs~G-IG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 6 LRGKVALVAGATRG-AGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETI-EETAELVTAAG--GRGIAVQVDHLVPE 80 (305)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEecccccccccccccchH-HHHHHHHHhcC--CceEEEEcCCCCHH
Confidence 45788999987655 4443 345676 699988873 333 33334444433 23667777765432
Q ss_pred H---HHhhhcCCCCCccEEEECC
Q 021116 220 E---RAEQFVGKDGPFDYMSVTP 239 (317)
Q Consensus 220 ~---~~~~~~~~~~~fDlV~~dP 239 (317)
. ...+....-+..|++|.|.
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECC
Confidence 1 1111111125689999876
No 470
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=49.72 E-value=11 Score=37.53 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=15.0
Q ss_pred CCeEEEECCCcchHHHHH
Q 021116 156 PGRWLDLYSGTGSVGIEA 173 (317)
Q Consensus 156 ~~rVLDlgcGtG~l~Iea 173 (317)
.-+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 458999999999887654
No 471
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=49.72 E-value=1.4e+02 Score=26.61 Aligned_cols=80 Identities=6% Similarity=-0.068 Sum_probs=45.1
Q ss_pred CeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcCCC
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGKD 229 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~~~ 229 (317)
+++|=.|+ +|.+|.. ++++|+ +|+.++.+.... +...+.+....-..++.++..|+.+... ...+....-
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~-~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGY-RVAVADINSEKA-ANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46777774 5566554 345676 699999998776 5544444322111247788888654321 111111112
Q ss_pred CCccEEEECC
Q 021116 230 GPFDYMSVTP 239 (317)
Q Consensus 230 ~~fDlV~~dP 239 (317)
+..|.|+.+.
T Consensus 80 ~~id~vv~~a 89 (259)
T PRK12384 80 GRVDLLVYNA 89 (259)
T ss_pred CCCCEEEECC
Confidence 4689999865
No 472
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=49.71 E-value=18 Score=32.79 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=17.1
Q ss_pred eEEEEecHHHHHHHHhhhcCCCCCccEEEECCCCCC
Q 021116 208 SSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPYTA 243 (317)
Q Consensus 208 v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy~~ 243 (317)
+++.+.|..+.+... +.+-|+|++||||..
T Consensus 160 ~~i~~~d~~~~~~~~------~~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 160 VEIENRDFDEVIERY------DSPNDFVYLDPPYYS 189 (260)
T ss_dssp EEEEEC-CHGGGTT--------TTE-EEEE--S-TT
T ss_pred ceeEehhHHHHHhhc------cCCCeEEEEcCcccc
Confidence 678888877765322 256789999999976
No 473
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=49.44 E-value=29 Score=32.69 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=28.4
Q ss_pred CCCeEEEECC-CcchHHHHHHHc-CCCEEEEEeCCHHHH
Q 021116 155 RPGRWLDLYS-GTGSVGIEAISR-GCSEVHFVEMDPWVV 191 (317)
Q Consensus 155 ~~~rVLDlgc-GtG~l~Ieaas~-Ga~~V~aVDin~~al 191 (317)
+..+|+=+|+ |.|+.++||+.| |..+++.||.|.-++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 3456766666 689999998765 888999999987554
No 474
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.35 E-value=2.4e+02 Score=27.03 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=53.5
Q ss_pred CeEEEECCCcchHHHH----HHHcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEE-ecHHHHHHHHhhhcCCCC
Q 021116 157 GRWLDLYSGTGSVGIE----AISRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHT-VRVETFLERAEQFVGKDG 230 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~G-a~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~-gD~~~~l~~~~~~~~~~~ 230 (317)
.+|.=+|| |.+|-. ++..+ +.+++.+|++++.+...+.+......+.....+.. +|..++ .
T Consensus 4 ~Ki~IiGa--G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-----------~ 70 (312)
T cd05293 4 NKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-----------A 70 (312)
T ss_pred CEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-----------C
Confidence 36667776 666643 22344 46899999988755233333322222222124443 665542 4
Q ss_pred CccEEEE--CCCCCCcc------------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 231 PFDYMSV--TPPYTAVD------------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 231 ~fDlV~~--dPPy~~~~------------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
..|+|++ ..|...+. +.++.+.+. -..|+|++++..++.
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~---~~~p~~~vivvsNP~ 123 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLV---KYSPNAILLVVSNPV 123 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HhCCCcEEEEccChH
Confidence 5799987 33433221 122333333 247899988776644
No 475
>PLN02780 ketoreductase/ oxidoreductase
Probab=48.94 E-value=82 Score=30.00 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=38.5
Q ss_pred CCCeEEEECCCcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHH
Q 021116 155 RPGRWLDLYSGTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVE 216 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~ 216 (317)
.+..+|=.|+..| +|. +++++|+ +|+.++.|++.+ +.+.+.++...-..++..+..|+.
T Consensus 52 ~g~~~lITGAs~G-IG~alA~~La~~G~-~Vil~~R~~~~l-~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDG-IGKGFAFQLARKGL-NLVLVARNPDKL-KDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcH-HHHHHHHHHHHCCC-CEEEEECCHHHH-HHHHHHHHHHCCCcEEEEEEEECC
Confidence 4678888886554 443 3556787 599999999988 776666654321123556666654
No 476
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=48.94 E-value=1.2e+02 Score=27.07 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=44.3
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHH-------------------HHHHHHHHhHHHhCCCCceEEE
Q 021116 155 RPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPW-------------------VVSNVLIPNLEWTGFLDVSSIH 211 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~-------------------al~~~ar~N~~~~gl~~~v~ii 211 (317)
.+.+|+=+|||. +|.+. +..|..+++.+|.+.- .+ +.++++++..+-.-+++.+
T Consensus 20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka-~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRA-EASLERLRALNPRVKVSVD 96 (197)
T ss_pred HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHH-HHHHHHHHHHCCCCEEEEE
Confidence 467888887654 66554 3568899999987632 22 4556666666543335544
Q ss_pred EecHHHHHHHHhhhcCCCCCccEEEEC
Q 021116 212 TVRVETFLERAEQFVGKDGPFDYMSVT 238 (317)
Q Consensus 212 ~gD~~~~l~~~~~~~~~~~~fDlV~~d 238 (317)
...+.+....+ -..||+|+..
T Consensus 97 ~~~~~~~~~~~------~~~~dvVi~~ 117 (197)
T cd01492 97 TDDISEKPEEF------FSQFDVVVAT 117 (197)
T ss_pred ecCccccHHHH------HhCCCEEEEC
Confidence 44333221111 1579999964
No 477
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=48.91 E-value=2.2e+02 Score=26.98 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=43.5
Q ss_pred HcC-CCEEEEEeCCHHHHHHHHHHhHHHhCCC-CceEEEE-ecHHHHHHHHhhhcCCCCCccEEEE--CCCCCCc-c---
Q 021116 175 SRG-CSEVHFVEMDPWVVSNVLIPNLEWTGFL-DVSSIHT-VRVETFLERAEQFVGKDGPFDYMSV--TPPYTAV-D--- 245 (317)
Q Consensus 175 s~G-a~~V~aVDin~~al~~~ar~N~~~~gl~-~~v~ii~-gD~~~~l~~~~~~~~~~~~fDlV~~--dPPy~~~-~--- 245 (317)
..| +.+++.+|++++.+ +....-+++.-.. ...++.. +|..+ + ...|+||+ .-|...+ +
T Consensus 19 ~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~~~~~~i~~~~~~~~-l----------~~aDiVIitag~p~~~~~~R~~ 86 (300)
T cd00300 19 AKGLASELVLVDVNEEKA-KGDALDLSHASAFLATGTIVRGGDYAD-A----------ADADIVVITAGAPRKPGETRLD 86 (300)
T ss_pred hcCCCCEEEEEeCCccHH-HHHHHhHHHhccccCCCeEEECCCHHH-h----------CCCCEEEEcCCCCCCCCCCHHH
Confidence 445 35799999998765 4444444433221 1234443 44322 1 45798887 3333322 1
Q ss_pred --------HHHHHHHHHHcCCcCCCeEEEEEeCCC
Q 021116 246 --------YEVLMAQISKSALVGKDSFIVVEYPLR 272 (317)
Q Consensus 246 --------~~~~l~~L~~~~lLkpgG~ivv~~~~~ 272 (317)
+.++.+.+. -..|+|++++..++.
T Consensus 87 l~~~n~~i~~~~~~~i~---~~~p~~~viv~sNP~ 118 (300)
T cd00300 87 LINRNAPILRSVITNLK---KYGPDAIILVVSNPV 118 (300)
T ss_pred HHHHHHHHHHHHHHHHH---HhCCCeEEEEccChH
Confidence 122333333 346899988776543
No 478
>PRK05650 short chain dehydrogenase; Provisional
Probab=48.78 E-value=1.7e+02 Score=26.36 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=45.5
Q ss_pred eEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH--H-HhhhcCCCC
Q 021116 158 RWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE--R-AEQFVGKDG 230 (317)
Q Consensus 158 rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~--~-~~~~~~~~~ 230 (317)
++|=.|+ +|.+|.+ +++.|. +|+.++.+.+.+ +.+...++..+ +++.++.+|+.+... . ........+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGG-EETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4565554 5556554 345666 699999998876 66555555443 347778888754321 1 100111124
Q ss_pred CccEEEECCC
Q 021116 231 PFDYMSVTPP 240 (317)
Q Consensus 231 ~fDlV~~dPP 240 (317)
.+|.+|.+.-
T Consensus 77 ~id~lI~~ag 86 (270)
T PRK05650 77 GIDVIVNNAG 86 (270)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 479
>PRK07454 short chain dehydrogenase; Provisional
Probab=48.62 E-value=1.6e+02 Score=25.97 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=48.5
Q ss_pred CCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~ 227 (317)
..+++|=.|+ +|.+|.. +++.|. +|+.++.++... +...+.++..+ .++.++.+|+.+... .......
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDAL-EALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567888874 6666654 345676 799999998876 55555444332 357788888754321 1110001
Q ss_pred CCCCccEEEECCC
Q 021116 228 KDGPFDYMSVTPP 240 (317)
Q Consensus 228 ~~~~fDlV~~dPP 240 (317)
..+..|.+|.+.-
T Consensus 80 ~~~~id~lv~~ag 92 (241)
T PRK07454 80 QFGCPDVLINNAG 92 (241)
T ss_pred HcCCCCEEEECCC
Confidence 1245899998653
No 480
>PHA02518 ParA-like protein; Provisional
Probab=48.59 E-value=33 Score=29.81 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=12.2
Q ss_pred HHHcCCCEEEEEeCCHHH
Q 021116 173 AISRGCSEVHFVEMDPWV 190 (317)
Q Consensus 173 aas~Ga~~V~aVDin~~a 190 (317)
+++.| .+|..||.|+..
T Consensus 25 la~~g-~~vlliD~D~q~ 41 (211)
T PHA02518 25 LHADG-HKVLLVDLDPQG 41 (211)
T ss_pred HHhCC-CeEEEEeCCCCC
Confidence 33455 479999999875
No 481
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=48.30 E-value=1.5e+02 Score=26.56 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
.+++++|=.|+. |.+|.+ +++.|+ +|+.++.++..+ +.+.+- .+ +++.++.+|+.+... ......
T Consensus 4 ~~~k~vlVtGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~-~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~ 75 (263)
T PRK06200 4 LHGQVALITGGG-SGIGRALVERFLAEGA-RVAVLERSAEKL-ASLRQR---FG--DHVLVVEGDVTSYADNQRAVDQTV 75 (263)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHH---hC--CcceEEEccCCCHHHHHHHHHHHH
Confidence 356788888864 444543 345676 699999998776 544332 22 346677887654321 111111
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
...+..|++|.+.-
T Consensus 76 ~~~g~id~li~~ag 89 (263)
T PRK06200 76 DAFGKLDCFVGNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 11256899997754
No 482
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=48.18 E-value=2e+02 Score=27.47 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCCeEEEECCCcchHHHHH---H-HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe---cHHHHHHHHhhhcC
Q 021116 155 RPGRWLDLYSGTGSVGIEA---I-SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV---RVETFLERAEQFVG 227 (317)
Q Consensus 155 ~~~rVLDlgcGtG~l~Iea---a-s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g---D~~~~l~~~~~~~~ 227 (317)
.+.+||=.|+ |.+|..+ + ..|+.+++++|.++... +.+++ .|.. .++.. +..+.+... .
T Consensus 186 ~g~~vlI~g~--g~vG~~~~~la~~~G~~~v~~~~~~~~k~-~~~~~----~g~~---~~i~~~~~~~~~~v~~~---~- 251 (365)
T cd08278 186 PGSSIAVFGA--GAVGLAAVMAAKIAGCTTIIAVDIVDSRL-ELAKE----LGAT---HVINPKEEDLVAAIREI---T- 251 (365)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCc---EEecCCCcCHHHHHHHH---h-
Confidence 4678887754 5555543 3 36776799999999887 66643 3442 22221 222222222 1
Q ss_pred CCCCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 228 KDGPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 228 ~~~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
...+|+|+-.-. . ...+.... +.++++|.++...
T Consensus 252 -~~~~d~vld~~g--~---~~~~~~~~--~~l~~~G~~v~~g 285 (365)
T cd08278 252 -GGGVDYALDTTG--V---PAVIEQAV--DALAPRGTLALVG 285 (365)
T ss_pred -CCCCcEEEECCC--C---cHHHHHHH--HHhccCCEEEEeC
Confidence 346898885321 1 11222222 2578888877643
No 483
>PRK07791 short chain dehydrogenase; Provisional
Probab=48.04 E-value=1.2e+02 Score=27.96 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCH---------HHHHHHHHHhHHHhCCCCceEEEEecHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDP---------WVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE 220 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~---------~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~ 220 (317)
..++++|=.|++.| +|.+ +++.|+ +|+.++.+. +.+ +.+.+.++..+ .++.++..|+.+...
T Consensus 4 l~~k~~lITGas~G-IG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~Dv~~~~~ 78 (286)
T PRK07791 4 LDGRVVIVTGAGGG-IGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAA-QAVVDEIVAAG--GEAVANGDDIADWDG 78 (286)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEeeCCccccccccchhHH-HHHHHHHHhcC--CceEEEeCCCCCHHH
Confidence 35778888887654 4433 445676 588888765 444 44444444333 246677777754221
Q ss_pred ---HHhhhcCCCCCccEEEECCC
Q 021116 221 ---RAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 221 ---~~~~~~~~~~~fDlV~~dPP 240 (317)
........-+..|++|.+.-
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 79 AANLVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 11111111257899998753
No 484
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=46.96 E-value=93 Score=32.87 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=55.6
Q ss_pred CeEEEECCCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH--HHHhhhcCCCC
Q 021116 157 GRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL--ERAEQFVGKDG 230 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l--~~~~~~~~~~~ 230 (317)
.+|+= ||.|.+|...+ +.|. .++.+|.|++.+ +.+++ .| ..++.||+.+.. ... .-+
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v-~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~ 463 (621)
T PRK03562 401 PRVII--AGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHI-ETLRK----FG----MKVFYGDATRMDLLESA-----GAA 463 (621)
T ss_pred CcEEE--EecChHHHHHHHHHHhCCC-CEEEEECCHHHH-HHHHh----cC----CeEEEEeCCCHHHHHhc-----CCC
Confidence 34544 56666665433 3454 599999999998 77754 23 357889987642 221 124
Q ss_pred CccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEeCCCCC
Q 021116 231 PFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEYPLRTD 274 (317)
Q Consensus 231 ~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~~~~~~ 274 (317)
+.|.+++-- .+.+..+..+...+.+.|+-.+++-....+.
T Consensus 464 ~A~~vvv~~----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 464 KAEVLINAI----DDPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred cCCEEEEEe----CCHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 688888642 1222223222222345777777776654443
No 485
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=46.90 E-value=2.6e+02 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=28.8
Q ss_pred CCCCeEEEECCCcchHHHHHH----HcCCCEEEEEeCCHHHHHHHHH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAI----SRGCSEVHFVEMDPWVVSNVLI 196 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaa----s~Ga~~V~aVDin~~al~~~ar 196 (317)
.++.+||=.|+ |.+|+.++ ..|+.+|++++.+++.. +.++
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~-~~~~ 229 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKF-EQAK 229 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH
Confidence 35788877754 67776543 35776799999999887 7764
No 486
>PLN02253 xanthoxin dehydrogenase
Probab=46.87 E-value=1.7e+02 Score=26.58 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~ 226 (317)
..++++|=.|+ +|.+|.++ ++.|+ +|+.++.+++.. +...+.+ +...++.++..|+.+...- .....
T Consensus 16 l~~k~~lItGa-s~gIG~~la~~l~~~G~-~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 16 LLGKVALVTGG-ATGIGESIVRLFHKHGA-KVCIVDLQDDLG-QNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 35678888874 55666543 45675 699999988765 4444333 2223578888887653211 11001
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|++|.+.
T Consensus 90 ~~~g~id~li~~A 102 (280)
T PLN02253 90 DKFGTLDIMVNNA 102 (280)
T ss_pred HHhCCCCEEEECC
Confidence 1124689998764
No 487
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=46.82 E-value=1.3e+02 Score=28.10 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=40.9
Q ss_pred CcchHHH----HHHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCC
Q 021116 165 GTGSVGI----EAISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPP 240 (317)
Q Consensus 165 GtG~l~I----eaas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPP 240 (317)
|.|.+|- .+.+.|. +|+++|.+++.+ +.+.+ .|.-+ ....+. +.. ...|+||+.-|
T Consensus 7 G~G~mG~sla~~L~~~g~-~V~~~d~~~~~~-~~a~~----~g~~~---~~~~~~-~~~----------~~aDlVilavp 66 (279)
T PRK07417 7 GLGLIGGSLGLDLRSLGH-TVYGVSRRESTC-ERAIE----RGLVD---EASTDL-SLL----------KDCDLVILALP 66 (279)
T ss_pred eecHHHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHH----CCCcc---cccCCH-hHh----------cCCCEEEEcCC
Confidence 4455543 3334554 799999999887 66543 23211 111222 111 45799998765
Q ss_pred CCCccHHHHHHHHHHcCCcCCCeEE
Q 021116 241 YTAVDYEVLMAQISKSALVGKDSFI 265 (317)
Q Consensus 241 y~~~~~~~~l~~L~~~~lLkpgG~i 265 (317)
-. ...+.++.+.. .++++.++
T Consensus 67 ~~--~~~~~~~~l~~--~l~~~~ii 87 (279)
T PRK07417 67 IG--LLLPPSEQLIP--ALPPEAIV 87 (279)
T ss_pred HH--HHHHHHHHHHH--hCCCCcEE
Confidence 32 23445555542 45666544
No 488
>PRK06720 hypothetical protein; Provisional
Probab=46.81 E-value=1.9e+02 Score=24.95 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=47.0
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~ 226 (317)
.+++.+|-.|++.| +|.. ++..|+ +|+.+|.+...+ +.+.+.+...+ .+..++..|+.+.. ....+..
T Consensus 14 l~gk~~lVTGa~~G-IG~aia~~l~~~G~-~V~l~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 14 LAGKVAIVTGGGIG-IGRNTALLLAKQGA-KVIVTDIDQESG-QATVEEITNLG--GEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred cCCCEEEEecCCCh-HHHHHHHHHHHCCC-EEEEEECCHHHH-HHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence 35677888876654 3332 345665 699999998876 65555554433 23566777764322 1110000
Q ss_pred CCCCCccEEEECCC
Q 021116 227 GKDGPFDYMSVTPP 240 (317)
Q Consensus 227 ~~~~~fDlV~~dPP 240 (317)
..-+..|+++.+.-
T Consensus 89 ~~~G~iDilVnnAG 102 (169)
T PRK06720 89 NAFSRIDMLFQNAG 102 (169)
T ss_pred HHcCCCCEEEECCC
Confidence 11256899998743
No 489
>PRK07024 short chain dehydrogenase; Provisional
Probab=46.81 E-value=1.6e+02 Score=26.42 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=44.0
Q ss_pred CeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhcCCC
Q 021116 157 GRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFVGKD 229 (317)
Q Consensus 157 ~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~~~~ 229 (317)
+++|=.|+ +|.+|.+ +++.|+ +|+.++.+++.+ +...+.+...+ ++.++.+|+.+.. ..........
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDAL-QAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35665664 5566654 345676 799999998877 55444332221 4778888875422 1111111112
Q ss_pred CCccEEEECC
Q 021116 230 GPFDYMSVTP 239 (317)
Q Consensus 230 ~~fDlV~~dP 239 (317)
+..|+++.+.
T Consensus 77 g~id~lv~~a 86 (257)
T PRK07024 77 GLPDVVIANA 86 (257)
T ss_pred CCCCEEEECC
Confidence 4579999764
No 490
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=46.78 E-value=1.1e+02 Score=28.19 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCCH
Q 021116 155 RPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMDP 188 (317)
Q Consensus 155 ~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~ 188 (317)
.+.+|+=+||| .|+..+. ++..|..+++.+|.|.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 46789999876 4544444 4456888999988764
No 491
>PRK05875 short chain dehydrogenase; Provisional
Probab=46.65 E-value=1.5e+02 Score=26.81 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCCeEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~ 226 (317)
.+++++|=.|++ |.+|..+ ++.|. +|++++.+++.. +...+.+...+...++.++.+|+.+... .+.+..
T Consensus 5 ~~~k~vlItGas-g~IG~~la~~l~~~G~-~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 5 FQDRTYLVTGGG-SGIGKGVAAGLVAAGA-AVMIVGRNPDKL-AAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHH-HHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 356789888854 4455543 35676 699999998776 5444444433222357788888754321 111100
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
...+..|++|.+.
T Consensus 82 ~~~~~~d~li~~a 94 (276)
T PRK05875 82 AWHGRLHGVVHCA 94 (276)
T ss_pred HHcCCCCEEEECC
Confidence 1124689999764
No 492
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=46.55 E-value=2.5e+02 Score=26.27 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCcchHHHHH---HH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYSGTGSVGIEA---IS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Iea---as-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~ 229 (317)
.++.+||-.++ |.++..+ ++ +|+..|++++.+++.. +.+++ +|...-+.....+..+.+..+. ..
T Consensus 160 ~~g~~vlI~~~--g~vg~~a~~la~~~G~~~v~~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~ 228 (340)
T TIGR00692 160 ISGKSVLVTGA--GPIGLMAIAVAKASGAYPVIVSDPNEYRL-ELAKK----MGATYVVNPFKEDVVKEVADLT----DG 228 (340)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH----hCCcEEEcccccCHHHHHHHhc----CC
Confidence 35677777554 5555443 33 5665588888888776 65543 3442111111233333332221 23
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEEe
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVEY 269 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~~ 269 (317)
..+|+|+-.- .. ...+.... +.|+++|.++..-
T Consensus 229 ~~~d~vld~~--g~---~~~~~~~~--~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEMS--GA---PKALEQGL--QAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEECC--CC---HHHHHHHH--HhhcCCCEEEEEc
Confidence 4689988641 11 12223222 2578888876543
No 493
>PRK08223 hypothetical protein; Validated
Probab=46.49 E-value=1e+02 Score=29.51 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=26.0
Q ss_pred CCCCeEEEECCC-cchHHHH-HHHcCCCEEEEEeCCH
Q 021116 154 LRPGRWLDLYSG-TGSVGIE-AISRGCSEVHFVEMDP 188 (317)
Q Consensus 154 ~~~~rVLDlgcG-tG~l~Ie-aas~Ga~~V~aVDin~ 188 (317)
++..+||=+||| .|+-.+. ++..|..+++.+|-|.
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 457899999987 4554444 4567888999999774
No 494
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=46.38 E-value=2.1e+02 Score=26.81 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=51.7
Q ss_pred CCCCeEEEECC--CcchHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEe-cHHHHHHHHhhhcCCC
Q 021116 154 LRPGRWLDLYS--GTGSVGIEAIS-RGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTV-RVETFLERAEQFVGKD 229 (317)
Q Consensus 154 ~~~~rVLDlgc--GtG~l~Ieaas-~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~g-D~~~~l~~~~~~~~~~ 229 (317)
.++++||=.|+ |.|.+.+.+++ +|+ +|++++.+++.. +.+++. +|...-+..-.. |..+.+.... .
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~-~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~ 219 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKV-DLLKNK---LGFDDAFNYKEEPDLDAALKRYF-----P 219 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHH-HHHHHh---cCCceeEEcCCcccHHHHHHHhC-----C
Confidence 35788887765 34444444444 576 699999888876 777543 454321111111 3333332221 2
Q ss_pred CCccEEEECCCCCCccHHHHHHHHHHcCCcCCCeEEEEE
Q 021116 230 GPFDYMSVTPPYTAVDYEVLMAQISKSALVGKDSFIVVE 268 (317)
Q Consensus 230 ~~fDlV~~dPPy~~~~~~~~l~~L~~~~lLkpgG~ivv~ 268 (317)
..+|+|| |.- + . ..+.... +.|+++|.++..
T Consensus 220 ~gvd~v~-d~~-g--~--~~~~~~~--~~l~~~G~iv~~ 250 (338)
T cd08295 220 NGIDIYF-DNV-G--G--KMLDAVL--LNMNLHGRIAAC 250 (338)
T ss_pred CCcEEEE-ECC-C--H--HHHHHHH--HHhccCcEEEEe
Confidence 4689887 421 1 1 1222222 267899998854
No 495
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=46.27 E-value=99 Score=24.23 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=22.7
Q ss_pred HHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEEECCCC
Q 021116 196 IPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMSVTPPY 241 (317)
Q Consensus 196 r~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~~dPPy 241 (317)
++-++..|++ +++.+.++.+.... ...+|+|+.-++.
T Consensus 24 ~~~l~~~gi~--~~v~~~~~~e~~~~-------~~~~D~iv~t~~~ 60 (94)
T PRK10310 24 KELCQSHNIP--VELIQCRVNEIETY-------MDGVHLICTTARV 60 (94)
T ss_pred HHHHHHCCCe--EEEEEecHHHHhhh-------cCCCCEEEECCcc
Confidence 3444456663 67777777665321 1457988887764
No 496
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=45.81 E-value=75 Score=24.06 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=44.0
Q ss_pred CCcchHHHHHH----HcC--CCEEEEE-eCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHHHhhhcCCCCCccEEE
Q 021116 164 SGTGSVGIEAI----SRG--CSEVHFV-EMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLERAEQFVGKDGPFDYMS 236 (317)
Q Consensus 164 cGtG~l~Ieaa----s~G--a~~V~aV-Din~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~~~~~~~~~~~fDlV~ 236 (317)
.|+|.+|-.++ +.| ..+|+.+ +.+++.+ +... +.++ +.+...+..+... ..|+||
T Consensus 5 IG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~-~~~~---~~~~----~~~~~~~~~~~~~----------~advvi 66 (96)
T PF03807_consen 5 IGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKA-AELA---KEYG----VQATADDNEEAAQ----------EADVVI 66 (96)
T ss_dssp ESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH-HHHH---HHCT----TEEESEEHHHHHH----------HTSEEE
T ss_pred ECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHH-HHHH---Hhhc----cccccCChHHhhc----------cCCEEE
Confidence 37777776543 334 1468855 9999887 4443 3333 2344446565553 469999
Q ss_pred ECCCCCCccHHHHHHHHHHcCCcCCCeEEE
Q 021116 237 VTPPYTAVDYEVLMAQISKSALVGKDSFIV 266 (317)
Q Consensus 237 ~dPPy~~~~~~~~l~~L~~~~lLkpgG~iv 266 (317)
+--|.. .+.++++.+. .+.++..++
T Consensus 67 lav~p~--~~~~v~~~i~---~~~~~~~vi 91 (96)
T PF03807_consen 67 LAVKPQ--QLPEVLSEIP---HLLKGKLVI 91 (96)
T ss_dssp E-S-GG--GHHHHHHHHH---HHHTTSEEE
T ss_pred EEECHH--HHHHHHHHHh---hccCCCEEE
Confidence 764322 4666666662 234444443
No 497
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=45.79 E-value=1.9e+02 Score=25.41 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=44.5
Q ss_pred eEEEECCCcchHHHHH----HHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHH---HHhhhcCCCC
Q 021116 158 RWLDLYSGTGSVGIEA----ISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLE---RAEQFVGKDG 230 (317)
Q Consensus 158 rVLDlgcGtG~l~Iea----as~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~---~~~~~~~~~~ 230 (317)
++|=.| |+|.+|.++ +++|. +|++++.++... +.+...++..+ .++.++.+|+.+... .+.......+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGA-EAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHH-HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 455555 567777654 34576 799999998776 55555444333 347788888764320 0000000124
Q ss_pred CccEEEECC
Q 021116 231 PFDYMSVTP 239 (317)
Q Consensus 231 ~fDlV~~dP 239 (317)
..|.||.+.
T Consensus 78 ~~d~vi~~a 86 (255)
T TIGR01963 78 GLDILVNNA 86 (255)
T ss_pred CCCEEEECC
Confidence 579998754
No 498
>PRK06198 short chain dehydrogenase; Provisional
Probab=45.77 E-value=1.7e+02 Score=26.06 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHH---HHHhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFL---ERAEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l---~~~~~~~ 226 (317)
..++++|=.|+ +|.+|.. +++.|+.+|+.++.++... +.....+...+ .++.++..|+.+.. .......
T Consensus 4 ~~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKG-EAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 45678887775 4556554 3456775599999988765 54444443332 34667777775321 1111110
Q ss_pred CCCCCccEEEECC
Q 021116 227 GKDGPFDYMSVTP 239 (317)
Q Consensus 227 ~~~~~fDlV~~dP 239 (317)
..-+..|.++.++
T Consensus 80 ~~~g~id~li~~a 92 (260)
T PRK06198 80 EAFGRLDALVNAA 92 (260)
T ss_pred HHhCCCCEEEECC
Confidence 1114689998865
No 499
>PRK05717 oxidoreductase; Validated
Probab=45.71 E-value=1.5e+02 Score=26.56 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCcchHHHH----HHHcCCCEEEEEeCCHHHHHHHHHHhHHHhCCCCceEEEEecHHHHHHH---Hhhhc
Q 021116 154 LRPGRWLDLYSGTGSVGIE----AISRGCSEVHFVEMDPWVVSNVLIPNLEWTGFLDVSSIHTVRVETFLER---AEQFV 226 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ie----aas~Ga~~V~aVDin~~al~~~ar~N~~~~gl~~~v~ii~gD~~~~l~~---~~~~~ 226 (317)
..++++|=.|+ +|.+|.+ +++.|+ +|+.++.++... +...+. .+ +++.++.+|+.+...- ..+..
T Consensus 8 ~~~k~vlItG~-sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~-~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 8 HNGRVALVTGA-ARGIGLGIAAWLIAEGW-QVVLADLDRERG-SKVAKA---LG--ENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred cCCCEEEEeCC-cchHHHHHHHHHHHcCC-EEEEEcCCHHHH-HHHHHH---cC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 46788887775 4566654 345665 699999987655 333222 22 3467788887653211 11110
Q ss_pred CCCCCccEEEECCCC
Q 021116 227 GKDGPFDYMSVTPPY 241 (317)
Q Consensus 227 ~~~~~fDlV~~dPPy 241 (317)
...+.+|++|.+.-+
T Consensus 80 ~~~g~id~li~~ag~ 94 (255)
T PRK05717 80 GQFGRLDALVCNAAI 94 (255)
T ss_pred HHhCCCCEEEECCCc
Confidence 112468999986543
No 500
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=45.38 E-value=52 Score=30.25 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cCC-CEEEEEeCCH
Q 021116 154 LRPGRWLDLYSGTGSVGIEAIS-RGC-SEVHFVEMDP 188 (317)
Q Consensus 154 ~~~~rVLDlgcGtG~l~Ieaas-~Ga-~~V~aVDin~ 188 (317)
.++.+|+|+.-|.|.++--+.. .|. ..|+++--++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 4689999999999999854332 232 2577764443
Done!