BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021118
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 193/302 (63%), Gaps = 7/302 (2%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L +Y+ +CP E+ V AV A N+ + L+RMHFHDCF+RGCDASVLL+S N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 83 TAEKDG-PPNISLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
TAEKD P N SL F VI AK AVEA CP VSCADILA +ARD+ L+G T+ VP
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 142 GRKDGRISKATDTR-QLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQN 200
GR+DG +S A++ Q+P+P FN +QL SF+ + L+ ++V LSG HS+G +HCSSF N
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 201 RIHNFNATLDIDPSISPSFATSLRHVCPAHN-KVKNAGATLDSST-TVFDNAYYKLLLQG 258
R++NFN+ IDP++SPS+A LR+ CPA++ + +LD T +V DN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLT 241
Query: 259 KSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLDCRR 315
L +SDQ+L+T A V A + +A+ + F Q+M++M I TG EIR +C
Sbjct: 242 LGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSV 301
Query: 316 VN 317
VN
Sbjct: 302 VN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 190/303 (62%), Gaps = 9/303 (2%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L++ +YS TCP V + +++A+++D + A+L+R+HFHDCF+ GCDAS+LL+ G
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
+EK+ PN+ S F V+DN K A+E CPGVVSC+D+LAL++ +V+L+GGP+W V
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 142 GRKDGRISK-ATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQN 200
GR+D + A +P+P ++S + FS GL+ DLVALSG H+ G + C F N
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 201 RIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQGK 259
R+ NF+ T + DP+++ + ++L+ +CP N + LD ST FDN Y+ L
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCP-QNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 260 SLFSSDQSLLTT--PKTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLDCR 314
L SDQ L +T T A+V+ FA +++ F AF QSMI M +I TG EIRLDC+
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCK 301
Query: 315 RVN 317
+VN
Sbjct: 302 KVN 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 181/302 (59%), Gaps = 11/302 (3%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
LS + Y+K+CP L V V A+K + + A+L+R+HFHDCF+ GCDAS+LL+
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA--- 58
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
+EK PNI S F VID K AVE CPGVVSCADIL L+ARD+V LSGGP W V
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 142 GRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQNR 201
GRKDG ++ LP+P + + F L++ D+VALSG H+ G + C+ F NR
Sbjct: 119 GRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNR 178
Query: 202 IHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTT-VFDNAYYKLLLQGKS 260
+ NF + D ++ S ++L+ VCP N A LD STT FDN Y+K LL+GK
Sbjct: 179 LFNFTGAGNPDATLETSLLSNLQTVCPLGGN-SNITAPLDRSTTDTFDNNYFKNLLEGKG 237
Query: 261 LFSSDQSL----LTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQ-EIRLDCRR 315
L SSDQ L L TK LV ++RS+S F F +MIRM +I+ G E+R +CR
Sbjct: 238 LLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNISNGASGEVRTNCRV 297
Query: 316 VN 317
+N
Sbjct: 298 IN 299
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 240 bits (613), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 192/305 (62%), Gaps = 11/305 (3%)
Query: 22 ALSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGK 81
+L++ +Y+ TCP V V++A ++D + A+L+R+HFHDCF+ GCDAS+LL++ G
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 82 NTAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVP 140
+EK+ PN S F V+DN K A+E CPGVVSC D+LAL+++ +V+LSGGP+W V
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 141 KGRKDG-RISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQ 199
GR+D ++A +P+PT +S + FS GL+ DLVALSG H+ G + C F
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 200 NRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGAT-LDSST-TVFDNAYYKLLLQ 257
NR+ NF+ + DP+++ + ++L+ +CP K + +G+T LD ST FDN Y+ L
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCP--QKGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 258 GKSLFSSDQSLLTTPK--TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLD 312
L SDQ L +T T A+V+ FA +++ F AF QSMI M +I TG EIRLD
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 313 CRRVN 317
C++ N
Sbjct: 301 CKKTN 305
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 185/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C S
Sbjct: 123 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 184/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGHS G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 185/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 123 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A +D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDMDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 123 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 180/300 (60%), Gaps = 12/300 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
LSSN+Y+ CP + + +AV A+ + + A+LLR+HFHDCF++GCDASVLL+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
T EK PN S+ F VID K VE++CPGVVSCADILA++ARD+V GG +W+V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 142 GRKDGRI-SKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQN 200
GR+D S ++ LPAP FN+S L +FS +G + +LV LSG H++G + C++F+
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 201 RIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKS 260
RI+N + +I P++A SL+ CP+ N ++ FDNAYY L K
Sbjct: 182 RIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 261 LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRM---SSITGGGQEIRLDCRRVN 317
L SDQ L T + V+ ++ + + F F +MI+M S +TG +IR +CR+ N
Sbjct: 235 LLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LP P F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 123 GRRDS-LQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 184/303 (60%), Gaps = 9/303 (2%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +TCP L V + A D + A+L+R+HFHDCF++GCD SVLL +
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
+E+D PNI S+ V+++ K AVE CP VSCADILA++A A L GGP W VP
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 142 GRKDGRISKATDTRQ-LPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQN 200
GR+D + T Q LPAP FN++QL+ SF+ +GL+ DLV LSGGH+ G + CS+F N
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 201 RIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQGK 259
R++NF+ T + DP+++ ++ LR CP N + LD ST FDN YY LLQ
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCP-QNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 260 SLFSSDQSLLTTP--KTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLDCR 314
L SDQ L +TP T +V+ F+ +++ F + F SMI+M +I TG EIRL C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 315 RVN 317
VN
Sbjct: 301 FVN 303
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LP P F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 123 GRRDS-LQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HFHDCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVAL GGH+ G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 183/306 (59%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++LR+HF DCF+ GCDAS+LL++
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 123 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 240
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 241 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 300
Query: 312 DCRRVN 317
+CR VN
Sbjct: 301 NCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 182/306 (59%), Gaps = 13/306 (4%)
Query: 23 LSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
L+ +Y +CP + V + + +++D + A++L +HF DCF+ GCDAS+LL++
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 83 TAEKDGPPNI-SLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPK 141
EKD N S F VID K AVE+ CP VSCAD+L ++A+ +V L+GGP+W VP
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 142 GRKDGRISKATD--TRQLPAPTFNISQLQQSFSQRGLSM-ADLVALSGGHSLGFSHCSSF 198
GR+D + D LPAP F + QL+ SF GL+ +DLVALSGGH+ G + C
Sbjct: 122 GRRDS-LQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 199 QNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLLLQ 257
+R++NF+ T DP+++ ++ +LR +CP + + A D T T+FDN YY L +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLS-ALVDFDLRTPTIFDNKYYVNLEE 239
Query: 258 GKSLFSSDQSLLTTPK---TKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRL 311
K L SDQ L ++P T LV FA S F NAFV++M RM +I TG +IRL
Sbjct: 240 QKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRL 299
Query: 312 DCRRVN 317
+CR VN
Sbjct: 300 NCRVVN 305
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 16/301 (5%)
Query: 22 ALSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGK 81
LS ++Y +TCP+ E+ V V++A++ D + A LLR+HFHDCF++GCDASVLL+
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 82 NTAEKDGPPNISLH--AFYVIDNAKKAVEAMCPG-VVSCADILALSARDAVALSGGPTWD 138
E+ PPN++L AF +++ + +E C G VVSC+DILAL+ARD+V +SGGP +
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 139 VPKGRKDGRISKATDT--RQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCS 196
VP GR+D R +T LP P+ N+ L + GL DLV +SGGH++G +HCS
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 197 SFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSST-TVFDNAYYKLL 255
SF++R+ DP+ISP+F + L+ CPA K + LD T VFDN YY L
Sbjct: 188 SFEDRLFPRP-----DPTISPTFLSRLKRTCPA--KGTDRRTVLDVRTPNVFDNKYYIDL 240
Query: 256 LQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLD 312
+ + LF SDQ L T T+ +V +FA+S+ F F S+ +M + T E+R +
Sbjct: 241 VNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRN 300
Query: 313 C 313
C
Sbjct: 301 C 301
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 120/293 (40%), Gaps = 70/293 (23%)
Query: 30 KTCPKLETAVTNAVKKAMKN------DKTVPAALLRMHFHDCFIRGCDASVLLESKGKNT 83
K+ P + AV+KA K +K +LR+ +H S KG T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWH---------SAGTFDKGTKT 64
Query: 84 AEKDG----PPNISLHAFYVIDNAKKAVE---AMCPGVVSCADILALSARDAVALSGGPT 136
G P ++ A +D A + +E A P ++S AD L+ AV ++GGP
Sbjct: 65 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 123
Query: 137 WDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ-RGLSMADLVALSGGHSLGFSH- 194
GR+D + + R LP T L+ F + GL+ D+VALSGGH++G +H
Sbjct: 124 VPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK 181
Query: 195 -CSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYK 253
S F+ S+ +FDN+Y+
Sbjct: 182 EASGFEG--------------------------------------PWTSNPLIFDNSYFT 203
Query: 254 LLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302
LL G+ SD++LL+ P + LV K+A + AF + ++ ++S +
Sbjct: 204 ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
+VS AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GLS D+VALSGGH++G AH +
Sbjct: 147 AMGLSDQDIVALSGGHTIG------------------------------------AAHKE 170
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LLT + LV K+A + F
Sbjct: 171 RSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVF 230
Query: 289 ENAFVQSMIRMSSI 302
+ ++ +++S +
Sbjct: 231 FADYAEAHLKLSEL 244
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + +LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED--KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 159 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 182
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 183 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 243 FADYAEAHQKLSEL 256
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 118/292 (40%), Gaps = 66/292 (22%)
Query: 29 SKTCPKLETAVTNAVKKAMKN------DKTVPAALLRMHFHDCFIRGCDASVLLESKGKN 82
K+ P + AV+KA K +K +LR+ +H S KG
Sbjct: 1 GKSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWH---------SAGTFDKGTK 51
Query: 83 TAEKDG----PPNISLHAFYVIDNAKKAVE---AMCPGVVSCADILALSARDAVALSGGP 135
T G P ++ A +D A + +E A P ++S AD L+ AV ++GGP
Sbjct: 52 TGGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP 110
Query: 136 TWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ-RGLSMADLVALSGGHSLGFSH 194
GR+D + + R LP T L+ F + GL+ D+VALSGGH++G
Sbjct: 111 EVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG--- 165
Query: 195 CSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKL 254
AH + S+ +FDN+Y+
Sbjct: 166 ---------------------------------AAHKERSGFEGPWTSNPLIFDNSYFTE 192
Query: 255 LLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302
LL G+ SD++LL+ P + LV K+A + AF + ++ ++S +
Sbjct: 193 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 118/291 (40%), Gaps = 66/291 (22%)
Query: 30 KTCPKLETAVTNAVKKAMKN------DKTVPAALLRMHFHDCFIRGCDASVLLESKGKNT 83
K+ P + AV+KA K +K +LR+ +H S KG T
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWH---------SAGTFDKGTKT 64
Query: 84 AEKDG----PPNISLHAFYVIDNAKKAVE---AMCPGVVSCADILALSARDAVALSGGPT 136
G P ++ A +D A + +E A P ++S AD L+ AV ++GGP
Sbjct: 65 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 123
Query: 137 WDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ-RGLSMADLVALSGGHSLGFSHC 195
GR+D + + R LP T L+ F + GL+ D+VALSGGH++G
Sbjct: 124 VPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIG---- 177
Query: 196 SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLL 255
AH + S+ +FDN+Y+ L
Sbjct: 178 --------------------------------AAHKERSGFEGPWTSNPLIFDNSYFTEL 205
Query: 256 LQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302
L G+ SD++LL+ P + LV K+A + AF + ++ ++S +
Sbjct: 206 LSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 147 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 170
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 171 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 231 FADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 147 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 170
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 171 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 231 FADYAEAHQKLSEL 244
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 159 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 182
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 183 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 243 FADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 159 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 182
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 183 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 243 FADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 146
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 147 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 170
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 171 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 230
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 231 FADYAEAHQKLSEL 244
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 159 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 182
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 183 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 243 FADYAEAHQKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 43/194 (22%)
Query: 114 VVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
++S AD L+ AV ++GGP GR+D + + R LP T L+ F +
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGK 158
Query: 174 -RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
GL+ D+VALSGGH++G AH +
Sbjct: 159 AMGLTDQDIVALSGGHTIG------------------------------------AAHKE 182
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFARSKSAF 288
S+ +FDN+Y+ LL G+ SD++LL+ P + LV K+A + AF
Sbjct: 183 RSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAF 242
Query: 289 ENAFVQSMIRMSSI 302
+ ++ ++S +
Sbjct: 243 FADYAEAHQKLSEL 256
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 106/269 (39%), Gaps = 61/269 (22%)
Query: 56 ALLRMHFH-----DCFIRGCDASVLLESKGKNTAEKDGPPNISLHAF-----YV----ID 101
+L+R+ +H DCF +KDG PN + F Y +D
Sbjct: 29 SLIRLAWHEAASYDCF------------------KKDGSPNSASMRFKPECLYAGNKGLD 70
Query: 102 NAKKAVEAMCPGV--VSCADILALSARDAVALSGGPTWDVPKGR---KDGRISKATDTRQ 156
+KA+E + +S AD+ L+A A+ GGPT GR KDG + D R
Sbjct: 71 IPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVC-GPDGR- 128
Query: 157 LPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHC--SSFQN-RIHNFNATLDIDP 213
LP + S +++ F + G + + VAL G H+ G +H S + H+ N
Sbjct: 129 LPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNG------ 182
Query: 214 SISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPK 273
SF T L N +D +TT KL+ + SD LL P
Sbjct: 183 -FDNSFFTQLLDEDWVLNPKVEQMQLMDRATT-------KLM-----MLPSDVCLLLDPS 229
Query: 274 TKALVSKFARSKSAFENAFVQSMIRMSSI 302
+ V +A+ F F + +++ +
Sbjct: 230 YRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLP--------APTFNISQ 166
V+ AD+ L++ A+ +GGP + GR D T+ Q P P
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVD-----VTEPEQCPEEGRLPDAGPPSPAQH 141
Query: 167 LQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHV 226
L+ F + GL+ ++VALSG H+LG S D S T
Sbjct: 142 LRDVFYRMGLNDKEIVALSGAHTLGRSRP----------------DRSGWGKPETKYTKD 185
Query: 227 CPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKS----LFSSDQSLLTTPKTKALVSKFA 282
P G + + FDN+Y+K + + + + +D +L P K K+A
Sbjct: 186 GPG----APGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYA 241
Query: 283 RSKSAFENAFVQSMIRMSSI 302
AF + ++ ++S++
Sbjct: 242 ADPEAFFKDYAEAHAKLSNL 261
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 38/243 (15%)
Query: 77 ESKGKNTAEKDGPPNISLHAF-----YV----IDNAKKAVEAMCPGV--VSCADILALSA 125
E+ + +KDG PN + F Y +D +KA+E + +S AD+ L+A
Sbjct: 36 EAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAA 95
Query: 126 RDAVALSGGPTWDVPKGR---KDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLV 182
A+ GGPT GR KDG + D R LP + S +++ F + G + + V
Sbjct: 96 YVAIEYMGGPTIPFCWGRVDAKDGSVC-GPDGR-LPDGSKTQSHVREVFRRLGFNDQETV 153
Query: 183 ALSGGHSLGFSHC--SSFQN-RIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGAT 239
AL G H+ G H S + H+ N SF T L N
Sbjct: 154 ALIGAHTCGECHIEFSGYHGPWTHDKNG-------FDNSFFTQLLDEDWVLNPKVEQMQL 206
Query: 240 LDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRM 299
+D +TT KL+ + SD LL P + V +A+ F F + ++
Sbjct: 207 MDRATT-------KLM-----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 254
Query: 300 SSI 302
+ +
Sbjct: 255 TEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 38/243 (15%)
Query: 77 ESKGKNTAEKDGPPNISLHAF-----YV----IDNAKKAVEAMCPGV--VSCADILALSA 125
E+ + +KDG PN + F Y +D +KA+E + +S AD+ L+A
Sbjct: 37 EAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAA 96
Query: 126 RDAVALSGGPTWDVPKGR---KDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLV 182
A+ GGPT GR KDG + D R LP + S +++ F + G + + V
Sbjct: 97 YVAIEYMGGPTIPFCWGRVDAKDGSVC-GPDGR-LPDGSKTQSHVREVFRRLGFNDQETV 154
Query: 183 ALSGGHSLGFSHC--SSFQN-RIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGAT 239
AL G H+ G H S + H+ N SF T L N
Sbjct: 155 ALIGAHTCGECHIEFSGYHGPWTHDKNG-------FDNSFFTQLLDEDWVLNPKVEQMQL 207
Query: 240 LDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRM 299
+D +TT KL+ + SD LL P + V +A+ F F + ++
Sbjct: 208 MDRATT-------KLM-----MLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKL 255
Query: 300 SSI 302
+ +
Sbjct: 256 TEL 258
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 77/208 (37%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHTLGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G D++ VFDN++Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 19/186 (10%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSI-SPSFATSLRHVCPAHNKV 233
++ ++VAL G H+LG +H + + +P++ SF +L + K
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKN-----SGYEGPWTANPNVFDNSFYLNLLNEDWKLEKN 216
Query: 234 KNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFV 293
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 217 DANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 294 QSMIRM 299
++ ++
Sbjct: 264 KAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHTLGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VFDN++Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VALSG H+LG +H
Sbjct: 160 RLNMNDREVVALSGAHTLGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VFDN++Y LL G +D SL+
Sbjct: 182 LKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 57/204 (27%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 165 NMNDREVVALMGAHALGKTH--------------------------------------LK 186
Query: 235 NAGATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPKTK 275
N+G + VF N +Y LL G + +D SL+ PK
Sbjct: 187 NSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 246
Query: 276 ALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 247 SIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 57/204 (27%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 159 NMNDREVVALMGAHALGKTH--------------------------------------LK 180
Query: 235 NAGATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPKTK 275
N+G + VF N +Y LL G + +D SL+ PK
Sbjct: 181 NSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 240
Query: 276 ALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 241 SIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 57/204 (27%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 160 NMNDREVVALMGAHALGKTH--------------------------------------LK 181
Query: 235 NAGATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPKTK 275
N+G + VF N +Y LL G + +D SL+ PK
Sbjct: 182 NSGYEGGGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYL 241
Query: 276 ALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 242 SIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 157 RLNMNDREVVALMGAHALGKTH-------------------------------------- 178
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N YY LL G + +D SL+
Sbjct: 179 LKNSGYEGPWGAANNVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 238
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 75/208 (36%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHTLGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VFDN++Y LL G +D SL+
Sbjct: 182 LKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ F A ++ + F +L + K
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGP---FGAANNV---FTNEFYLNLLNEDWKLEK 217
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 218 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 293 VQSMIRM 299
++ ++
Sbjct: 265 SKAFEKL 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 154
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ F A ++ + F +L + K
Sbjct: 155 NMNDREVVALMGAHALGKTHLKRSGYEGP---FGAANNV---FTNEFYLNLLNEDWKLEK 208
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 209 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 255
Query: 293 VQSMIRM 299
++ ++
Sbjct: 256 SKAFEKL 262
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 159 NMNDREVVALKGAHALGKTH--------------------------------------LK 180
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 181 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 240
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ F A ++ + F +L + K
Sbjct: 161 NMNDREVVALMGAHALGKTHLKRSGYEGP---FGAANNV---FTNEFYLNLLNEDWKLEK 214
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 215 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDF 261
Query: 293 VQSMIRM 299
++ ++
Sbjct: 262 SKAFEKL 268
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVF------TNEFYLNLLNEDWKLEK 217
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 218 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 293 VQSMIRM 299
++ ++
Sbjct: 265 SKAFEKL 271
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 162 RLNMNDREVVALMGAHALGKTH-------------------------------------- 183
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 184 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 243
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 162 NMNDREVVALMGAHALGKTH--------------------------------------LK 183
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 184 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 243
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCF------TNEFYLNLLNEDWKLEK 215
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 216 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 293 VQSMIRM 299
++ ++
Sbjct: 263 SKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 165 NMNDREVVALMGAHALGKTH--------------------------------------LK 186
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 187 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 246
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 247 YLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 161
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 162 RLNMNDREVVALMGAHALGKTH-------------------------------------- 183
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 184 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 243
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 244 PKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 162 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPWGAANNVFTNEGYLNLL 207
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 208 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 262 FSKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 162 NMNDREVVALMGAHALGKTH--------------------------------------LK 183
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 184 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 243
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 162 NMNDREVVALMGAHALGKTH--------------------------------------LK 183
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 184 NSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 243
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHALGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVF------TNEFYLNLLNEDWKLEK 212
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 213 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 293 VQSMIRM 299
++ ++
Sbjct: 260 SKAFEKL 266
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 159 NMNDREVVALMGAHALGKTH--------------------------------------LK 180
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 181 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 240
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 161 NMNDREVVALMGAHALGKTH--------------------------------------LK 182
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 183 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 242
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 243 YLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHALGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHALGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 159
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H
Sbjct: 160 RLNMNDREVVALMGAHALGKTH-------------------------------------- 181
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 182 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 159 NMNDREVVALMGAHALGKTH--------------------------------------LK 180
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 181 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 240
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 159 NMNDREVVALMGAHALGKTH--------------------------------------LK 180
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 181 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 240
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 241 YLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVF------TNEFYLNLLNENWKLEK 217
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 218 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 293 VQSMIRM 299
++ ++
Sbjct: 265 SKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 164 NMNDREVVALMGAHALGKTH--------------------------------------LK 185
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 186 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 245
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 246 YLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 162 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVF------TNEFYLNLLNENWKLEK 215
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 216 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 293 VQSMIRM 299
++ ++
Sbjct: 263 SKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +H N+ + + + T+ +++ +
Sbjct: 157 RLNMNDREVVALMGAHALGKTHLK---------NSGYEGPWGAANNVFTNEKYLNLLNED 207
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
K D++ +D+ G + +D SL+ PK ++V ++A + F F
Sbjct: 208 WKLEKN--DANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 293 VQSMIRM 299
++ ++
Sbjct: 260 SKAFEKL 266
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 159 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVF------TNEFYLNLLNEDWKLEK 212
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 213 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 293 VQSMIRM 299
++ ++
Sbjct: 260 SKAFEKL 266
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHC--SSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
++ ++VAL G H+LG +H S ++ N + F +L + K
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVF------TNEFYLNLLNEDWKLEK 217
Query: 233 VKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAF 292
DS + G + +D SL+ PK ++V ++A + F F
Sbjct: 218 NDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 293 VQSMIRM 299
++ ++
Sbjct: 265 SKAFEKL 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 162 NMNDREVVALMGAHALGKTH--------------------------------------LK 183
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 184 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 243
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 164 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPGGAANNVFTNEFYLNLL 209
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 210 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 264 FSKAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 162 NMNDREVVALMGAHALGKTH--------------------------------------LK 183
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 184 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 243
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 244 YLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 164 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPQGAANNVFTNEFYLNLL 209
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 210 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 264 FSKAFEKL 271
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 159 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPGGAANNVFTNEFYLNLL 204
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 205 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 259 FSKAFEKL 266
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 162 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPGGAANNVFTNEFYLNLL 207
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 208 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 262 FSKAFEKL 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 162 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPGGAANNVFTNEFYLNLL 207
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 208 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 262 FSKAFEKL 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 159 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPQGAANNVFTNEFYLNLL 204
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 205 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 259 FSKAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H N+ + P A + + +
Sbjct: 160 NMNDREVVALMGAHALGKTHLK---------NSGYE-----GPGGAANNVFTNEFYLNLL 205
Query: 235 NAGATL---DSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENA 291
N L D++ +D+ G + +D SL+ PK ++V ++A + F
Sbjct: 206 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 259
Query: 292 FVQSMIRM 299
F ++ ++
Sbjct: 260 FSKAFEKL 267
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 175 GLSMADLVALSGGHSLGFSHCSS 197
++ ++VAL G H+LG +H +
Sbjct: 164 NMNDREVVALMGAHALGKTHLKN 186
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G H+LG +H +K
Sbjct: 165 NMNDREVVALMGAHALGKTH--------------------------------------LK 186
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + ++ SL+ PK
Sbjct: 187 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPK 246
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 247 YLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 175 GLSMADLVALSGGHSLGFSHCSS 197
++ ++VAL G H+LG +H +
Sbjct: 165 NMNDREVVALMGAHALGKTHLKN 187
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHCSS 197
++ ++VAL G H+LG +H +
Sbjct: 162 NMNDREVVALMGAHALGKTHLKN 184
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 175 GLSMADLVALSGGHSLGFSHCSS 197
++ ++VAL G H+LG +H +
Sbjct: 159 NMNDREVVALMGAHALGKTHLKN 181
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 175 GLSMADLVALSGGHSLGFSHC 195
++ ++VAL G H+LG +H
Sbjct: 162 NMNDREVVALMGAHALGKTHL 182
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G H+LG +
Sbjct: 157 RLNMNDREVVALMGAHALG--------------------------------------KTE 178
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 179 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 238
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T F ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSFVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 63/208 (30%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPK--GRKDGRISKATDTRQLPAPTFNISQLQQSFS 172
+S D+ +L AV GP +P GR D D +LP + ++ F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPK--IPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQ 156
Query: 173 QRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNK 232
+ ++ ++VAL G +LG +H
Sbjct: 157 RLNMNDREVVALMGAGALGKTH-------------------------------------- 178
Query: 233 VKNAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTT 271
+KN+G ++ VF N +Y LL G + +D SL+
Sbjct: 179 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 238
Query: 272 PKTKALVSKFARSKSAFENAFVQSMIRM 299
PK ++V ++A + F F ++ ++
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G +LG +H +K
Sbjct: 160 NMNDREVVALMGAGALGKTH--------------------------------------LK 181
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 182 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 241
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 242 YLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 59/206 (28%)
Query: 115 VSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQR 174
+S D+ +L AV GP GR D D +LP + ++ F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVK 234
++ ++VAL G +LG +H +K
Sbjct: 160 NMNDREVVALMGAGALGKTH--------------------------------------LK 181
Query: 235 NAG--ATLDSSTTVFDNAYYKLLLQ-------------------GKSLFSSDQSLLTTPK 273
N+G ++ VF N +Y LL G + +D SL+ PK
Sbjct: 182 NSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPK 241
Query: 274 TKALVSKFARSKSAFENAFVQSMIRM 299
++V ++A + F F ++ ++
Sbjct: 242 YLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 90 PNISLHAFYVIDNAKKAVEAMCPGVVS 116
P+I LHA ++ NA++ +E PGVV
Sbjct: 192 PDIPLHALAMLKNAREGIEPDQPGVVG 218
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 79/222 (35%), Gaps = 58/222 (26%)
Query: 115 VSCADILALS-ARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ 173
VS D + + A A +GGP GR + IS+ + +P PT + ++ +
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSN--ISQPSPDGLVPDPTDSADKILARMAD 161
Query: 174 RGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKV 233
G S ++V L HS+ A ++D +
Sbjct: 162 IGFSPTEVVHLLASHSIA---------------AQYEVDTDV------------------ 188
Query: 234 KNAGATLDSSTTVFDNAYY-KLLLQGKSL------------------FSSDQSLLTTPKT 274
AG+ DS+ +VFD ++ + LL G SD +L P+T
Sbjct: 189 --AGSPFDSTPSVFDTQFFVESLLHGTQFTGSGQGGEVMSPIPGEFRLQSDFALSRDPRT 246
Query: 275 KALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
++ A N F M R++ I E+ +DC V
Sbjct: 247 ACEWQALVNNQQAMVNNFEAVMSRLAVIGQIPSEL-VDCSDV 287
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPQVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 35/167 (20%)
Query: 176 LSMADLVALSGGHSL--GFSHCSSFQNRIHNFNATLDIDPSISPSFATSL--RHVCPAHN 231
L D VA S H + GF S R+ D SP L H A +
Sbjct: 124 LGRPDAVAASPDHLVPEGFDSVDSILARMG--------DAGFSPVEVVWLLASHSIAAAD 175
Query: 232 KVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLFSSDQSLL 269
KV + G DS+ VFD+ ++ +L LQG+ SD L
Sbjct: 176 KVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLA 235
Query: 270 TTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 236 RDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 105 KAVEAMCPGVVSCADILALSAR----DAVALSGG-PTWDVPKGRKDGRISKATDTRQLPA 159
+ V+AM P V + AL R D VAL+ G P +D P+ K+ + A
Sbjct: 6 RRVQAMKPDAVVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYA 65
Query: 160 PTFNISQLQQSFSQR-----GLSMA---DLVALSGGHSL 190
P I +L+++ +++ GLS+ +V + G +L
Sbjct: 66 PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 30 KTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKNTAEKDGP 89
+T P++ + + A +N +P +++ HD FI+GC + + DGP
Sbjct: 243 RTLPRVTVTEDDLLAAAGEN--IIPQSVVAAFTHDIFIKGCQVNFSI----------DGP 290
Query: 90 PNISLHAFYVIDNAKKAVE 108
++ + Y D+ + E
Sbjct: 291 EDVEVTTLYPEDSFRTVEE 309
>pdb|2DWU|A Chain A, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|B Chain B, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
pdb|2DWU|C Chain C, Crystal Structure Of Glutamate Racemase Isoform Race1 From
Bacillus Anthracis
Length = 276
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 28 YSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDC--FIRGCDASVLLESKGKNTAE 85
+S CP L T V N ++ + V ALL + D I GC LLES K
Sbjct: 144 HSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELG 203
Query: 86 KD 87
+D
Sbjct: 204 ED 205
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 237 GATLDSSTTVFDNAYY-------KLL-------------LQGKSLFSSDQSLLTTPKTKA 276
G DS+ VFD+ ++ +L LQG+ SD L P+T
Sbjct: 183 GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTAC 242
Query: 277 LVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
++ +N F +M +M ++ G + +DC V
Sbjct: 243 EWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 58/195 (29%)
Query: 142 GRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQNR 201
GR D A+ +P P ++ + G S ++V L HS+
Sbjct: 125 GRPDA--VAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIA---------- 172
Query: 202 IHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYY-------KL 254
A +DPSI G DS+ VFD+ ++ +L
Sbjct: 173 -----AAAKVDPSIP--------------------GTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 255 L-------------LQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSS 301
LQG+ SD L P+T ++ +N F +M +M +
Sbjct: 208 FPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-A 266
Query: 302 ITGGGQEIRLDCRRV 316
+ G + +DC V
Sbjct: 267 LLGQDKTKLIDCSDV 281
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 58/195 (29%)
Query: 142 GRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQNR 201
GR D A+ +P P ++ + G S ++V+L HS+
Sbjct: 125 GRPDA--VAASPDHLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA---------- 172
Query: 202 IHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYY-------KL 254
A +DPSI G DS+ VFD+ ++ +L
Sbjct: 173 -----AADKVDPSIP--------------------GTPFDSTPGVFDSQFFIETQLKGRL 207
Query: 255 L-------------LQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSS 301
LQG+ SD L P+T ++ +N F +M +M +
Sbjct: 208 FPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-A 266
Query: 302 ITGGGQEIRLDCRRV 316
+ G + +DC V
Sbjct: 267 LLGQDKTKLIDCSDV 281
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 237 GATLDSSTTVFDNAYY-------KLL-------------LQGKSLFSSDQSLLTTPKTKA 276
G DS+ VFD+ ++ +L LQG+ SD L P+T
Sbjct: 183 GTPFDSTPEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDPQTAC 242
Query: 277 LVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
++ +N F +M +M ++ G + +DC V
Sbjct: 243 EWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 225 HVCPAHNKVKNA--GATLDSSTTVFDNAYY-------KLL-------------LQGKSLF 262
H A +KV + G DS+ VFD+ ++ +L LQG+
Sbjct: 169 HSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRL 228
Query: 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRV 316
SD L P+T ++ +N F +M +M ++ G + +DC V
Sbjct: 229 QSDHLLARDPQTACEWQSMVNNQPKIQNRFAATMSKM-ALLGQDKTKLIDCSDV 281
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 158 PAPTFNISQLQQSFSQRGLSMADLVAL-SGGHSLGFSH 194
P P + ++++F + G++ + VAL +GGH+ G +H
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTH 298
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 40 TNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGK---NTAEKDGPPNISLHA 96
+NA+ K + D + PAA+ +I+G D ++ + G+ N A + P +I+ A
Sbjct: 22 SNAMTKVLHTD-SAPAAI------GPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQA 74
Query: 97 FYVIDNAKKAVEA 109
+DN K VEA
Sbjct: 75 RQSLDNVKAVVEA 87
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 105 KAVEAMCPGVVSCADILALSAR----DAVALSGG-PTWDVPKGRKDGRISKATDTRQLPA 159
+ V+AM P + AL R D VAL+ G P +D P+ K+ + A
Sbjct: 6 RRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYA 65
Query: 160 PTFNISQLQQSFSQR-----GLSMA---DLVALSGGHSL 190
P I +L+++ +++ GLS+ +V + G +L
Sbjct: 66 PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 105 KAVEAMCPGVVSCADILALSAR----DAVALSGG-PTWDVPKGRKDGRISKATDTRQLPA 159
+ V+AM P + AL R D VAL+ G P +D P+ K+ + A
Sbjct: 6 RRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYA 65
Query: 160 PTFNISQLQQSFSQR-----GLSMA---DLVALSGGHSL 190
P I +L+++ +++ GLS+ +V + G +L
Sbjct: 66 PPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,373,197
Number of Sequences: 62578
Number of extensions: 312361
Number of successful extensions: 983
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 137
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)