Query 021118
Match_columns 317
No_of_seqs 168 out of 1436
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-108 4E-113 781.4 26.1 311 3-317 4-324 (324)
2 cd00693 secretory_peroxidase H 100.0 8E-101 2E-105 726.5 25.8 294 22-316 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.2E-73 4.9E-78 522.3 8.1 228 39-284 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 2.1E-69 4.6E-74 507.2 22.0 228 35-313 14-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 6E-67 1.3E-71 485.2 19.7 225 34-302 11-248 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 4.9E-66 1.1E-70 477.7 19.9 227 26-302 4-245 (250)
7 cd00692 ligninase Ligninase an 100.0 2.5E-64 5.5E-69 480.6 22.6 236 35-317 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 1.1E-63 2.3E-68 461.5 20.1 215 38-302 19-245 (251)
9 cd00314 plant_peroxidase_like 100.0 5.3E-60 1.1E-64 439.4 18.7 222 38-301 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 5.4E-55 1.2E-59 423.0 19.4 263 22-302 28-391 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.5E-53 7.7E-58 433.5 20.5 263 23-302 39-398 (716)
12 cd08201 plant_peroxidase_like_ 100.0 3.1E-51 6.8E-56 378.4 11.8 219 39-301 27-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 1.6E-49 3.4E-54 404.8 19.6 262 23-302 41-404 (726)
14 cd08200 catalase_peroxidase_2 100.0 4.4E-39 9.5E-44 301.1 17.7 218 41-302 17-295 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.2E-33 2.6E-38 290.0 17.9 217 39-302 430-708 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2.6E-33 5.6E-38 286.2 18.8 218 41-302 442-720 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1E-28 2.3E-33 242.6 18.2 233 52-302 93-415 (730)
18 COG0376 KatG Catalase (peroxid 99.5 6.6E-14 1.4E-18 138.8 13.0 214 41-302 452-724 (730)
19 PTZ00411 transaldolase-like pr 63.9 63 0.0014 31.7 9.9 75 115-189 161-251 (333)
20 PRK12309 transaldolase/EF-hand 41.8 3.7E+02 0.0081 26.9 11.8 65 114-178 154-224 (391)
21 PRK05269 transaldolase B; Prov 39.9 2.2E+02 0.0048 27.7 9.4 65 115-179 151-221 (318)
22 TIGR00874 talAB transaldolase. 39.1 2.2E+02 0.0049 27.7 9.2 142 115-289 149-310 (317)
23 COG3763 Uncharacterized protei 34.0 46 0.00099 25.3 2.8 30 36-65 22-51 (71)
24 KOG4065 Uncharacterized conser 31.1 1.2E+02 0.0026 25.5 5.1 83 3-106 5-96 (144)
25 PF11895 DUF3415: Domain of un 24.0 61 0.0013 25.2 2.1 16 287-302 2-17 (80)
26 PRK12346 transaldolase A; Prov 22.4 1E+02 0.0022 30.1 3.7 75 114-188 149-239 (316)
27 PF06387 Calcyon: D1 dopamine 21.5 55 0.0012 29.2 1.5 27 27-63 108-134 (186)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.7e-108 Score=781.37 Aligned_cols=311 Identities=43% Similarity=0.750 Sum_probs=289.0
Q ss_pred hHHHHHHHHHhc-cCCCCccCCCccccccCCccHHHHHHHHHHHHHHcCCCcchhhHHhhhccccccCCCceEeecCCCC
Q 021118 3 AVVALIFALAMF-PVSSPVSALSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGK 81 (317)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~l~~~fY~~sCp~~e~iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv~GcDaSill~~~~~ 81 (317)
+|+.++|+|++. ....+.++|+++||++|||++|+||++.|++++.+||+++|++|||+||||||+||||||||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-- 81 (324)
T PLN03030 4 FIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-- 81 (324)
T ss_pred ehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC--
Confidence 455566665553 33444577999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCcchhhhHHHHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCC
Q 021118 82 NTAEKDGPPNISLHAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPT 161 (317)
Q Consensus 82 ~~~E~~~~~N~~L~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~ 161 (317)
.+||++++|.+|+||++|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++.+||+|+
T Consensus 82 -~~Ek~a~~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~ 160 (324)
T PLN03030 82 -NTEKTALPNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFT 160 (324)
T ss_pred -cccccCCCCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999998776667899999
Q ss_pred CCHHHHHHHHHHcCCChhhhhhhhcCccccccccCCcccccccCCCCC-CCCCCCCHHHHHHHhhhCCC-CCCCCCCCcc
Q 021118 162 FNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATL-DIDPSISPSFATSLRHVCPA-HNKVKNAGAT 239 (317)
Q Consensus 162 ~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~nf~g~~-~~dp~~d~~~~~~L~~~Cp~-~~~~~~~~~~ 239 (317)
.++++|++.|+++||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|++.||+.||. ++.. ..+++
T Consensus 161 ~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~-~~~~l 239 (324)
T PLN03030 161 DSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGS-RRIAL 239 (324)
T ss_pred CCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCC-ccccC
Confidence 999999999999999999999999999999999999999999999875 58999999999999999995 3323 46889
Q ss_pred CCCCccccChHHHHHhhcCccccccccccccChhHHHHHHHHhhCh----HHHHHHHHHHHHHhHcc---CCCCCccccC
Q 021118 240 LDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKALVSKFARSK----SAFENAFVQSMIRMSSI---TGGGQEIRLD 312 (317)
Q Consensus 240 D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~~yA~~~----~~F~~~Fa~Am~Km~~l---tg~~GeiR~~ 312 (317)
|+.||.+|||+||+||+.++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+| ||.+||||++
T Consensus 240 D~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~ 319 (324)
T PLN03030 240 DTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKV 319 (324)
T ss_pred CCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceecc
Confidence 9999999999999999999999999999999999999999999875 59999999999999999 9999999999
Q ss_pred CccCC
Q 021118 313 CRRVN 317 (317)
Q Consensus 313 C~~~n 317 (317)
|+.+|
T Consensus 320 C~~vN 324 (324)
T PLN03030 320 CSAIN 324 (324)
T ss_pred ccccC
Confidence 99998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.5e-101 Score=726.46 Aligned_cols=294 Identities=53% Similarity=0.939 Sum_probs=283.1
Q ss_pred CCCccccccCCccHHHHHHHHHHHHHHcCCCcchhhHHhhhccccccCCCceEeecCCCCCCCCCCCCCCCCcchhhhHH
Q 021118 22 ALSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESKGKNTAEKDGPPNISLHAFYVID 101 (317)
Q Consensus 22 ~l~~~fY~~sCp~~e~iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv~GcDaSill~~~~~~~~E~~~~~N~~L~g~~~I~ 101 (317)
||+++||++|||++|+||++.|++.+..+++++|++|||+||||||+||||||||++++++.+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCChhhh
Q 021118 102 NAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADL 181 (317)
Q Consensus 102 ~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dl 181 (317)
.||++||+.||++||||||||||||+||+++|||.|+|++||+|+.++.+..++.||.|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999998876654689999999999999999999999999
Q ss_pred hhhhcCccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCC-CCCCCCCccCCCCccccChHHHHHhhcCcc
Q 021118 182 VALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAH-NKVKNAGATLDSSTTVFDNAYYKLLLQGKS 260 (317)
Q Consensus 182 VaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~-~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g 260 (317)
|+|+||||||++||.+|.+|||||+|++++||+||+.|+..|++.||.+ +.+ ..+++|+.||.+|||+||++|+.++|
T Consensus 161 VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~-~~~~lD~~Tp~~FDn~Yy~~l~~~~g 239 (298)
T cd00693 161 VALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDD-TLVPLDPGTPNTFDNSYYKNLLAGRG 239 (298)
T ss_pred eeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCC-ccccCCCCCCCccccHHHHHHHhccc
Confidence 9999999999999999999999999998999999999999999999953 333 57899999999999999999999999
Q ss_pred ccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc---CCCCCccccCCccC
Q 021118 261 LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLDCRRV 316 (317)
Q Consensus 261 ll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l---tg~~GeiR~~C~~~ 316 (317)
+|+|||+|+.|++|+++|++||.|++.|+++|++||+||+++ ||.+||||++|+.+
T Consensus 240 lL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 240 LLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999 99999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.2e-73 Score=522.30 Aligned_cols=228 Identities=50% Similarity=0.878 Sum_probs=208.8
Q ss_pred HHHHHHHHHHcCCCcchhhHHhhhccccc-cCCCceEeecCCCCCCCCCCCCCCCCcc-hhhhHHHHHHHHHhhCCCCcc
Q 021118 39 VTNAVKKAMKNDKTVPAALLRMHFHDCFI-RGCDASVLLESKGKNTAEKDGPPNISLH-AFYVIDNAKKAVEAMCPGVVS 116 (317)
Q Consensus 39 Vr~~v~~~~~~~~~~a~~lLRL~FHDcfv-~GcDaSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~~cp~~VS 116 (317)
||+.|++.+..+++++|+||||+|||||+ +|||||||+. .+|+++++|.+|+ ++++|+.||+++|+.||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 4799999999997 999999999999999999999
Q ss_pred HHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhhcCccccccccC
Q 021118 117 CADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHSLGFSHCS 196 (317)
Q Consensus 117 cADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~hc~ 196 (317)
|||||+||||+||+.+|||.|+|++||+|+.++++..+.+||.|+.++++|++.|+++|||++|||||+||||||++||.
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~ 155 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCS 155 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGG
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceec
Confidence 99999999999999999999999999999999998643469999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcCccccccccccccChhHHH
Q 021118 197 SFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKSLFSSDQSLLTTPKTKA 276 (317)
Q Consensus 197 ~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~ 276 (317)
+|. ||| + .+||+||+.|+.. .| ..+.+ ..+++| ||.+|||+||++++.++|+|+||++|++|++|+.
T Consensus 156 ~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~-~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 156 SFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGD-NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp CTG-GTS-C----SSGTTSTHHHHHH---SS-STSGC-TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred ccc-ccc-c----cccccccccccee---cc-CCCcc-cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 999 999 5 5799999999988 99 43333 467888 9999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 021118 277 LVSKFARS 284 (317)
Q Consensus 277 ~V~~yA~~ 284 (317)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-69 Score=507.23 Aligned_cols=228 Identities=30% Similarity=0.459 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHcCCCcchhhHHhhhcccc-------ccCCCceEeecCCCCCCCCCCCCCCCCc-chhhhHHHHHHH
Q 021118 35 LETAVTNAVKKAMKNDKTVPAALLRMHFHDCF-------IRGCDASVLLESKGKNTAEKDGPPNISL-HAFYVIDNAKKA 106 (317)
Q Consensus 35 ~e~iVr~~v~~~~~~~~~~a~~lLRL~FHDcf-------v~GcDaSill~~~~~~~~E~~~~~N~~L-~g~~~I~~iK~~ 106 (317)
++.+ ++.+ ..+.++|.++|.+|||+||||| ++||||||+++ +|+++++|.+| +||++|++||++
T Consensus 14 ~~~~-~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~ 85 (289)
T PLN02608 14 IEKA-RRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAK 85 (289)
T ss_pred HHHH-HHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHH
Confidence 4444 4445 4477899999999999999999 89999999984 69999999999 699999999998
Q ss_pred HHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhhc
Q 021118 107 VEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSG 186 (317)
Q Consensus 107 le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 186 (317)
+ ++|||||||+||||+||+++|||.|+|++||+|++++++. ++||+|+.+++++++.|+++||+++|||+|+|
T Consensus 86 ~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 86 H-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred c-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 7 5899999999999999999999999999999999998644 78999999999999999999999999999999
Q ss_pred CccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcC--ccc--c
Q 021118 187 GHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQG--KSL--F 262 (317)
Q Consensus 187 aHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl--l 262 (317)
|||||++||. |+ +|.|. . ..||.+|||+||++++.+ +|+ |
T Consensus 159 AHTiG~ahc~----r~-g~~g~------------------------------~-~~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDGP------------------------------W-TKEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred cccccccccc----CC-CCCCC------------------------------C-CCCCCccChHHHHHHHcCCcCCcccc
Confidence 9999999994 55 33210 1 168999999999999999 788 7
Q ss_pred ccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc---CCCCCccccCC
Q 021118 263 SSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI---TGGGQEIRLDC 313 (317)
Q Consensus 263 ~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l---tg~~GeiR~~C 313 (317)
+|||+|+.|++|+.+|++||.|++.|+++|++||+||++| ||++||+.+.-
T Consensus 203 ~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred ccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 9999999999999999999999999999999999999999 99999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=6e-67 Score=485.18 Aligned_cols=225 Identities=27% Similarity=0.414 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHHHHHcCCCcchhhHHhhhccccccCCCceEeecCC---CCCCCCCCCCCCCCc-chhhhHHHHHHHHHh
Q 021118 34 KLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDASVLLESK---GKNTAEKDGPPNISL-HAFYVIDNAKKAVEA 109 (317)
Q Consensus 34 ~~e~iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv~GcDaSill~~~---~~~~~E~~~~~N~~L-~g~~~I~~iK~~le~ 109 (317)
..++||++.|++.+. +++++|++|||+|||||+ ||+|+++++. ..+.+|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 458899999999999 999999999999999995 7777776533 223479999999999 8999999999987
Q ss_pred hCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccC-CCCCCCCCCHHHHHHHHHHcCCChhhhhhhhcCc
Q 021118 110 MCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDT-RQLPAPTFNISQLQQSFSQRGLSMADLVALSGGH 188 (317)
Q Consensus 110 ~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaH 188 (317)
| +||||||||||||+||+.+|||.|+|++||+|+.++....+ .+||.|+.++++|++.|+++||+++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 89999999999999999999999999999999999987666 7899999999999999999999999999999999
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcCcc--------
Q 021118 189 SLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKS-------- 260 (317)
Q Consensus 189 TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g-------- 260 (317)
|||++||.. ++|.|. |..||.+|||+||++|+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 163 TLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred eeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 999999953 233221 115899999999999999999
Q ss_pred ccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 261 LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 261 ll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
+|+||++|+.|++|+.+|++||.|++.|+++|+.||+||+++
T Consensus 207 ~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l 248 (253)
T cd00691 207 MLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSEL 248 (253)
T ss_pred echhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4.9e-66 Score=477.69 Aligned_cols=227 Identities=30% Similarity=0.504 Sum_probs=205.2
Q ss_pred ccccc--CCccHHHHHHHHHHHHHHcCCCcchhhHHhhhc-----ccccc--CCCceEeecCCCCCCCCCCCCCCCCc-c
Q 021118 26 NYYSK--TCPKLETAVTNAVKKAMKNDKTVPAALLRMHFH-----DCFIR--GCDASVLLESKGKNTAEKDGPPNISL-H 95 (317)
Q Consensus 26 ~fY~~--sCp~~e~iVr~~v~~~~~~~~~~a~~lLRL~FH-----Dcfv~--GcDaSill~~~~~~~~E~~~~~N~~L-~ 95 (317)
+||.. -|+.++..+++.+++.+ .+++++|.||||+|| ||+++ ||||||.. .+|+++++|.+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 45553 37888899999999977 789999999999999 88886 99999954 369999999999 8
Q ss_pred hhhhHHHHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHH-c
Q 021118 96 AFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQ-R 174 (317)
Q Consensus 96 g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~-~ 174 (317)
||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+. ++||.|+.++++|++.|++ +
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~~ 149 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQM 149 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHhc
Confidence 999999999998 6999999999999999999999999999999999998764 7899999999999999997 5
Q ss_pred CCChhhhhhhhcCccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHH
Q 021118 175 GLSMADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKL 254 (317)
Q Consensus 175 Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~ 254 (317)
||+++|||+|+||||||++|| +|+ +|.|. ++ .||.+|||+||++
T Consensus 150 Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~-~tp~~fDn~Yy~~ 193 (250)
T PLN02364 150 GLSDKDIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WT-SNPLIFDNSYFKE 193 (250)
T ss_pred CCCHHHheeeecceeeccccC----CCC-CCCCC------------------------------CC-CCCCccchHHHHH
Confidence 999999999999999999999 454 33221 11 6899999999999
Q ss_pred hhcC--ccccc--cccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 255 LLQG--KSLFS--SDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 255 l~~~--~gll~--SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
|+.+ +|+|. |||+|+.|++|+.+|++||.|++.|+++|++||+||++|
T Consensus 194 ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~l 245 (250)
T PLN02364 194 LLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSEL 245 (250)
T ss_pred HhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHcc
Confidence 9999 89875 999999999999999999999999999999999999998
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-64 Score=480.63 Aligned_cols=236 Identities=26% Similarity=0.395 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHcCC---CcchhhHHhhhccccc------------cCCCceEeecCCCCCCCCCCCCCCCCcchhhh
Q 021118 35 LETAVTNAVKKAMKNDK---TVPAALLRMHFHDCFI------------RGCDASVLLESKGKNTAEKDGPPNISLHAFYV 99 (317)
Q Consensus 35 ~e~iVr~~v~~~~~~~~---~~a~~lLRL~FHDcfv------------~GcDaSill~~~~~~~~E~~~~~N~~L~g~~~ 99 (317)
+|..|++.+++.+..+. ..++.+|||+||||++ +||||||||+++ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 58899999999998554 4567799999999996 899999999753 699999999998 99
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhhHhh-hcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCh
Q 021118 100 IDNAKKAVEAMCPGVVSCADILALSARDAVA-LSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSM 178 (317)
Q Consensus 100 I~~iK~~le~~cp~~VScADilalAar~Av~-~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 178 (317)
|+.||..+|+.| ||||||||||||+||+ ..|||.|+|++||+|++++.+. +.||.|+.++++|++.|++|||+.
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~Gf~~ 164 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADAGFSP 164 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCH
Confidence 999999999998 9999999999999999 5699999999999999998765 789999999999999999999999
Q ss_pred hhhhhhhcCccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhh-c
Q 021118 179 ADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLL-Q 257 (317)
Q Consensus 179 ~dlVaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~-~ 257 (317)
+|||+|+||||||++|. +||+++ .+++| .||.+|||+||+|++ .
T Consensus 165 ~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 165 DELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETLLK 209 (328)
T ss_pred HHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHHHc
Confidence 99999999999999982 366663 24577 699999999999987 5
Q ss_pred Ccc-------------------ccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHccCCCCCccccCCccCC
Q 021118 258 GKS-------------------LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSITGGGQEIRLDCRRVN 317 (317)
Q Consensus 258 ~~g-------------------ll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ltg~~GeiR~~C~~~n 317 (317)
+++ +|+||++|+.|++|+.+|++||.||++|+++|++||+||++| |.....+.+|+.|+
T Consensus 210 ~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~l-gv~~~~l~dcs~v~ 287 (328)
T cd00692 210 GTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLL-GQDNISLTDCSDVI 287 (328)
T ss_pred CCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcC-CCCcchhccCcccC
Confidence 555 499999999999999999999999999999999999999998 33344778999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.1e-63 Score=461.49 Aligned_cols=215 Identities=28% Similarity=0.473 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHcCCCcchhhHHhhhccccc-------cCCCceEeecCCCCCCCCCCCCCCCCcc-hhhhHHHHHHHHHh
Q 021118 38 AVTNAVKKAMKNDKTVPAALLRMHFHDCFI-------RGCDASVLLESKGKNTAEKDGPPNISLH-AFYVIDNAKKAVEA 109 (317)
Q Consensus 38 iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv-------~GcDaSill~~~~~~~~E~~~~~N~~L~-g~~~I~~iK~~le~ 109 (317)
-++..+.+.+ .+...+|.+|||+||||.+ +||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~-- 89 (251)
T PLN02879 19 RCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF-- 89 (251)
T ss_pred HHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc--
Confidence 3566666665 4679999999999999974 8999999874 599999999997 999999999998
Q ss_pred hCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhhcCcc
Q 021118 110 MCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSGGHS 189 (317)
Q Consensus 110 ~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHT 189 (317)
++|||||||+||||+||+++|||.|+|++||+|+.++.+. ++||.|+.++++|++.|++|||+++|||+|+||||
T Consensus 90 ---~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 90 ---PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE--GRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred ---CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 6899999999999999999999999999999999998654 78999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcC--ccc--cccc
Q 021118 190 LGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQG--KSL--FSSD 265 (317)
Q Consensus 190 iG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl--l~SD 265 (317)
||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |+||
T Consensus 165 iG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD 208 (251)
T PLN02879 165 LGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQLPTD 208 (251)
T ss_pred ccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCccchhh
Confidence 9999995 4 333221 22 68999999999999999 898 6799
Q ss_pred cccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 266 QSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 266 ~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
++|+.|++|+++|++||.||+.|+++|++||+||++|
T Consensus 209 ~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~l 245 (251)
T PLN02879 209 KALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSEL 245 (251)
T ss_pred HHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999998
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.3e-60 Score=439.37 Aligned_cols=222 Identities=34% Similarity=0.500 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCCCcchhhHHhhhcccccc--------CCCceEeecCCCCCCCCCCCCCCCCc-chhhhHHHHHHHHH
Q 021118 38 AVTNAVKKAMKNDKTVPAALLRMHFHDCFIR--------GCDASVLLESKGKNTAEKDGPPNISL-HAFYVIDNAKKAVE 108 (317)
Q Consensus 38 iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv~--------GcDaSill~~~~~~~~E~~~~~N~~L-~g~~~I~~iK~~le 108 (317)
.|++.|++.+.+++++++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 4888999999999999999999999999996 999999997 39999999997 99999999999999
Q ss_pred hhCCCCccHHHHHHHhhhhHhhhc--CCCCcccCCCCCCCCCCC--cccC-CCCCCCCCCHHHHHHHHHHcCCChhhhhh
Q 021118 109 AMCPGVVSCADILALSARDAVALS--GGPTWDVPKGRKDGRISK--ATDT-RQLPAPTFNISQLQQSFSQRGLSMADLVA 183 (317)
Q Consensus 109 ~~cp~~VScADilalAar~Av~~~--GGP~~~v~~GR~D~~~s~--~~~~-~~lP~p~~~~~~l~~~F~~~Gl~~~dlVa 183 (317)
. |++|||||||+||+++||+.+ |||.|+|++||+|+..+. ...+ ..+|.|+.+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999663 2223 67899999999999999999999999999
Q ss_pred hh-cCccc-cccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcCc--
Q 021118 184 LS-GGHSL-GFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGK-- 259 (317)
Q Consensus 184 Ls-GaHTi-G~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~-- 259 (317)
|+ ||||| |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCcc
Confidence 99 99999 999998877664 1 1234799999999999999998
Q ss_pred --------------cccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHc
Q 021118 260 --------------SLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSS 301 (317)
Q Consensus 260 --------------gll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 301 (317)
++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.4e-55 Score=423.01 Aligned_cols=263 Identities=20% Similarity=0.332 Sum_probs=227.0
Q ss_pred CCCccc-cccCCccH-HHHHHHHHHHHHHcC--------CCcchhhHHhhhccccc-------cCCC-ceEeecCCCCCC
Q 021118 22 ALSSNY-YSKTCPKL-ETAVTNAVKKAMKND--------KTVPAALLRMHFHDCFI-------RGCD-ASVLLESKGKNT 83 (317)
Q Consensus 22 ~l~~~f-Y~~sCp~~-e~iVr~~v~~~~~~~--------~~~a~~lLRL~FHDcfv-------~GcD-aSill~~~~~~~ 83 (317)
.+-.+| |.+.+-.. .+.|++.+++.+... ...+|-+|||+||++.+ +|++ |+|.++
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------ 101 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------ 101 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------
Confidence 344445 44444333 257888888888754 47999999999999986 7997 899886
Q ss_pred CCCCCCCCCCc-chhhhHHHHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCc-----------
Q 021118 84 AEKDGPPNISL-HAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKA----------- 151 (317)
Q Consensus 84 ~E~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~----------- 151 (317)
+|++++.|.+| +++.+++.||+++ |..||+||+|+||+..||+.+|||.|++.+||.|...+..
T Consensus 102 pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~ 177 (409)
T cd00649 102 PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWL 177 (409)
T ss_pred cccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcc
Confidence 69999999999 6899999999988 4579999999999999999999999999999999975432
Q ss_pred ---------------------------ccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhh-hcCccccccccCCcccccc
Q 021118 152 ---------------------------TDTRQLPAPTFNISQLQQSFSQRGLSMADLVAL-SGGHSLGFSHCSSFQNRIH 203 (317)
Q Consensus 152 ---------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~~hc~~f~~Rl~ 203 (317)
+....||+|..++.+|++.|.+|||+.+||||| +||||||++||..|.+||.
T Consensus 178 ~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg 257 (409)
T cd00649 178 ADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG 257 (409)
T ss_pred cccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC
Confidence 111379999999999999999999999999999 5999999999999999982
Q ss_pred cCCCCCCCCCCCCHHHHHHHh--hhCCCC--CCCCCCCccC---CCCccccChHHHHHhhc-------------------
Q 021118 204 NFNATLDIDPSISPSFATSLR--HVCPAH--NKVKNAGATL---DSSTTVFDNAYYKLLLQ------------------- 257 (317)
Q Consensus 204 nf~g~~~~dp~~d~~~~~~L~--~~Cp~~--~~~~~~~~~D---~~tp~~FDN~Yy~~l~~------------------- 257 (317)
+||.+++.|+..|+ ..||.+ +.+ ....+| ..||.+|||+||++|+.
T Consensus 258 -------~dP~~~~~~~~gLgw~~~Cp~g~g~~t-~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~ 329 (409)
T cd00649 258 -------PEPEAAPIEQQGLGWKNSYGTGKGKDT-ITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKN 329 (409)
T ss_pred -------CCCCcCHHHHHhhcccccCCCCCCCCC-ccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccC
Confidence 69999999999995 899963 222 456788 57999999999999998
Q ss_pred -----------------CccccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 258 -----------------GKSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 258 -----------------~~gll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
++++|+||++|+.|++++++|++||.|++.||++|++||+||++-
T Consensus 330 ~~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hr 391 (409)
T cd00649 330 AAGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHR 391 (409)
T ss_pred ccccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 569999999999999999999999999999999999999999643
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.5e-53 Score=433.50 Aligned_cols=263 Identities=21% Similarity=0.327 Sum_probs=226.2
Q ss_pred CCccc-cccCCccH-HHHHHHHHHHHHHcC--------CCcchhhHHhhhccccc-------cCC-CceEeecCCCCCCC
Q 021118 23 LSSNY-YSKTCPKL-ETAVTNAVKKAMKND--------KTVPAALLRMHFHDCFI-------RGC-DASVLLESKGKNTA 84 (317)
Q Consensus 23 l~~~f-Y~~sCp~~-e~iVr~~v~~~~~~~--------~~~a~~lLRL~FHDcfv-------~Gc-DaSill~~~~~~~~ 84 (317)
+-.+| |.+.+-.. ...|++.+++.+... ...+|-+|||+||++.+ +|| .|+|.+. +
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------P 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------c
Confidence 44455 55554332 245888888888764 47999999999999986 798 4889886 6
Q ss_pred CCCCCCCCCc-chhhhHHHHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCC-------------
Q 021118 85 EKDGPPNISL-HAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISK------------- 150 (317)
Q Consensus 85 E~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~------------- 150 (317)
|++++.|.+| +++.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 113 ~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~ 188 (716)
T TIGR00198 113 LNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLT 188 (716)
T ss_pred ccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhh
Confidence 9999999999 689999999884 7899999999999999999999999999999999994332
Q ss_pred ------------------------cccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhh-cCccccccccCCcccccccC
Q 021118 151 ------------------------ATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALS-GGHSLGFSHCSSFQNRIHNF 205 (317)
Q Consensus 151 ------------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~nf 205 (317)
+..+..+|+|..++++|++.|++||||.+|||||+ ||||||++||.+|.+||
T Consensus 189 ~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--- 265 (716)
T TIGR00198 189 SSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--- 265 (716)
T ss_pred ccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC---
Confidence 11113699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCCCHHHHHHHhhhCCC--C-CCCCCCCccC---CCCccccChHHHHHhhcC---------------------
Q 021118 206 NATLDIDPSISPSFATSLRHVCPA--H-NKVKNAGATL---DSSTTVFDNAYYKLLLQG--------------------- 258 (317)
Q Consensus 206 ~g~~~~dp~~d~~~~~~L~~~Cp~--~-~~~~~~~~~D---~~tp~~FDN~Yy~~l~~~--------------------- 258 (317)
++||++++.|++.|+.+||. + +.....+.+| ..||.+|||+||+||+.+
T Consensus 266 ----g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~ 341 (716)
T TIGR00198 266 ----GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPE 341 (716)
T ss_pred ----CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccc
Confidence 37999999999999999984 2 1221356777 579999999999999975
Q ss_pred -------------ccccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 259 -------------KSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 259 -------------~gll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
+++|+||++|..|++++++|++||.|++.|+++|++||+||++.
T Consensus 342 ~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~ 398 (716)
T TIGR00198 342 IIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHR 398 (716)
T ss_pred ccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 68999999999999999999999999999999999999999976
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.1e-51 Score=378.42 Aligned_cols=219 Identities=26% Similarity=0.372 Sum_probs=182.5
Q ss_pred HHHHHHHHHHcCCCcchhhHHhhhcccc-------ccCCCceEeecCCCCCCCCCC-CCCCCCcchhhhHHHHHHHHHhh
Q 021118 39 VTNAVKKAMKNDKTVPAALLRMHFHDCF-------IRGCDASVLLESKGKNTAEKD-GPPNISLHAFYVIDNAKKAVEAM 110 (317)
Q Consensus 39 Vr~~v~~~~~~~~~~a~~lLRL~FHDcf-------v~GcDaSill~~~~~~~~E~~-~~~N~~L~g~~~I~~iK~~le~~ 110 (317)
|...-......+++++++||||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC-------
Confidence 4444444556889999999999999999 8999999999742 46887 5667788999988644
Q ss_pred CCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhhc-Ccc
Q 021118 111 CPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKATDTRQLPAPTFNISQLQQSFSQRGLSMADLVALSG-GHS 189 (317)
Q Consensus 111 cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHT 189 (317)
+||||||||||||+||+.+|||.|+|++||+|++++.+. + ||.|+.++++|++.|++|||+++|||+|+| |||
T Consensus 97 ---~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~--g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHT 170 (264)
T cd08201 97 ---RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA--G-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHT 170 (264)
T ss_pred ---ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc--c-CCCCccCHHHHHHHHHHcCCChHHHheeecCCee
Confidence 699999999999999999999999999999999988765 4 999999999999999999999999999995 999
Q ss_pred ccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccChHHHHHhhcCcc---------
Q 021118 190 LGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFDNAYYKLLLQGKS--------- 260 (317)
Q Consensus 190 iG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g--------- 260 (317)
||++||..|.++.- |.. ..+ ...++| .||.+|||+||.+++.+..
T Consensus 171 iG~ahc~~f~~~~~---------~g~---------------~~~-~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~ 224 (264)
T cd08201 171 LGGVHSEDFPEIVP---------PGS---------------VPD-TVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPN 224 (264)
T ss_pred eeecccccchhhcC---------Ccc---------------ccC-CCCCCC-CCccccchHHHHHHhcCCCCCceeecCC
Confidence 99999998877642 100 001 234577 7999999999999998742
Q ss_pred -ccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHc
Q 021118 261 -LFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSS 301 (317)
Q Consensus 261 -ll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~ 301 (317)
.+.||..++....-. .++..| +++.|.+..+..|.||.+
T Consensus 225 ~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 225 NTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 357999999865544 456777 799999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-49 Score=404.76 Aligned_cols=262 Identities=19% Similarity=0.335 Sum_probs=226.0
Q ss_pred CCccc-cccCCccH-HHHHHHHHHHHHHcC--------CCcchhhHHhhhccccc-------cCCC-ceEeecCCCCCCC
Q 021118 23 LSSNY-YSKTCPKL-ETAVTNAVKKAMKND--------KTVPAALLRMHFHDCFI-------RGCD-ASVLLESKGKNTA 84 (317)
Q Consensus 23 l~~~f-Y~~sCp~~-e~iVr~~v~~~~~~~--------~~~a~~lLRL~FHDcfv-------~GcD-aSill~~~~~~~~ 84 (317)
+-.+| |.+.+-.. ...|++.+.+.+... ...+|-+|||+||++.+ +||+ |+|.+. +
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------P 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------c
Confidence 44555 55555333 246888888888754 47999999999999986 7996 789876 6
Q ss_pred CCCCCCCCCc-chhhhHHHHHHHHHhhCCCCccHHHHHHHhhhhHhhhcCCCCcccCCCCCCCCCCCcc-----------
Q 021118 85 EKDGPPNISL-HAFYVIDNAKKAVEAMCPGVVSCADILALSARDAVALSGGPTWDVPKGRKDGRISKAT----------- 152 (317)
Q Consensus 85 E~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~----------- 152 (317)
|++++.|.+| +++.+++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+...
T Consensus 115 e~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~ 190 (726)
T PRK15061 115 LNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLG 190 (726)
T ss_pred cccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccc
Confidence 9999999999 7899999999998 45799999999999999999999999999999998654321
Q ss_pred ----------------------------cCCCCCCCCCCHHHHHHHHHHcCCChhhhhhhh-cCccccccccCCcccccc
Q 021118 153 ----------------------------DTRQLPAPTFNISQLQQSFSQRGLSMADLVALS-GGHSLGFSHCSSFQNRIH 203 (317)
Q Consensus 153 ----------------------------~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~ 203 (317)
.+..+|+|..++.+|++.|.+|||+.+|||||+ ||||||++||..|.+||
T Consensus 191 ~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl- 269 (726)
T PRK15061 191 GDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV- 269 (726)
T ss_pred cccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-
Confidence 112379999999999999999999999999995 99999999999999998
Q ss_pred cCCCCCCCCCCCCHHHHHHHh--hhCCCC--CCCCCCCccC---CCCccccChHHHHHhhcC------------------
Q 021118 204 NFNATLDIDPSISPSFATSLR--HVCPAH--NKVKNAGATL---DSSTTVFDNAYYKLLLQG------------------ 258 (317)
Q Consensus 204 nf~g~~~~dp~~d~~~~~~L~--~~Cp~~--~~~~~~~~~D---~~tp~~FDN~Yy~~l~~~------------------ 258 (317)
++||.+++.+++.|. +.||.+ +++ .+..+| ..||.+|||+||++|+.+
T Consensus 270 ------gpdP~~a~~~~qgLgw~~~c~~g~g~dt-~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~ 342 (726)
T PRK15061 270 ------GPEPEAAPIEEQGLGWKNSYGSGKGADT-ITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKD 342 (726)
T ss_pred ------CCCCCcCHHHHHhccccccCCCCCCCCC-ccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccC
Confidence 379999999999985 899963 223 456688 579999999999999985
Q ss_pred ------------------ccccccccccccChhHHHHHHHHhhChHHHHHHHHHHHHHhHcc
Q 021118 259 ------------------KSLFSSDQSLLTTPKTKALVSKFARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 259 ------------------~gll~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~l 302 (317)
+++|+||++|..|++++++|++||.|+++|+++|++||.||++-
T Consensus 343 ~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hr 404 (726)
T PRK15061 343 GAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHR 404 (726)
T ss_pred ccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHccc
Confidence 58999999999999999999999999999999999999999764
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=4.4e-39 Score=301.06 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=179.2
Q ss_pred HHHHHHHHcCCCcchhhHHhhhccccc-------cCCCce-EeecCCCCCCCCCCCCCCCC--c-chhhhHHHHHHHHHh
Q 021118 41 NAVKKAMKNDKTVPAALLRMHFHDCFI-------RGCDAS-VLLESKGKNTAEKDGPPNIS--L-HAFYVIDNAKKAVEA 109 (317)
Q Consensus 41 ~~v~~~~~~~~~~a~~lLRL~FHDcfv-------~GcDaS-ill~~~~~~~~E~~~~~N~~--L-~g~~~I~~iK~~le~ 109 (317)
+.+++.+.......+.||||+||++.+ +|++|+ |.|. +|++++.|.+ | +.+.+++.||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 567777778788999999999999986 899999 8775 6999999998 8 689999999999842
Q ss_pred h-CC-CCccHHHHHHHhhhhHhhhcCC-----CCcccCCCCCCCCCCCcccC---CCCCCCC------------CCHHHH
Q 021118 110 M-CP-GVVSCADILALSARDAVALSGG-----PTWDVPKGRKDGRISKATDT---RQLPAPT------------FNISQL 167 (317)
Q Consensus 110 ~-cp-~~VScADilalAar~Av~~~GG-----P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l 167 (317)
. -+ ..||.||+|+||+..|||.+|| |.+++.+||.|...+..... ..+|.+. .+.+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 2 11 2799999999999999999999 99999999999987643221 1234332 234779
Q ss_pred HHHHHHcCCChhhhhhhhcCc-cccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccc
Q 021118 168 QQSFSQRGLSMADLVALSGGH-SLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTV 246 (317)
Q Consensus 168 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~ 246 (317)
++.|.++|||++|||||+||| ++|..|..+ +.| ..+ .+|.+
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G-----------------------~wT--------~~p~~ 212 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG-----------------------VFT--------DRPGV 212 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC-----------------------CCc--------CCCCc
Confidence 999999999999999999997 699877422 111 111 58999
Q ss_pred cChHHHHHhhcCc--------------------c-----ccccccccccChhHHHHHHHHhhC--hHHHHHHHHHHHHHh
Q 021118 247 FDNAYYKLLLQGK--------------------S-----LFSSDQSLLTTPKTKALVSKFARS--KSAFENAFVQSMIRM 299 (317)
Q Consensus 247 FDN~Yy~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km 299 (317)
|||.||+||+... | .+.+|..|..|++.|++|+.||.| ++.||+||++||.||
T Consensus 213 f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Kl 292 (297)
T cd08200 213 LTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKV 292 (297)
T ss_pred cccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999998510 1 157899999999999999999999 999999999999999
Q ss_pred Hcc
Q 021118 300 SSI 302 (317)
Q Consensus 300 ~~l 302 (317)
+++
T Consensus 293 mel 295 (297)
T cd08200 293 MNL 295 (297)
T ss_pred Hhc
Confidence 976
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.2e-33 Score=289.99 Aligned_cols=217 Identities=19% Similarity=0.263 Sum_probs=174.6
Q ss_pred HHHHHHH---HHHcCCCcchhhHHhhhccccc-------cCCCce-EeecCCCCCCCCCCCCCC--CCc-chhhhHHHHH
Q 021118 39 VTNAVKK---AMKNDKTVPAALLRMHFHDCFI-------RGCDAS-VLLESKGKNTAEKDGPPN--ISL-HAFYVIDNAK 104 (317)
Q Consensus 39 Vr~~v~~---~~~~~~~~a~~lLRL~FHDcfv-------~GcDaS-ill~~~~~~~~E~~~~~N--~~L-~g~~~I~~iK 104 (317)
|++.|.+ .+.......+.||||+||++.+ +|++|+ |.|. +|++++.| .+| +.+.+++.||
T Consensus 430 v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~Ik 503 (716)
T TIGR00198 430 SEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKIQ 503 (716)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHHH
Confidence 3444444 3556677889999999999986 899999 8886 69999999 789 7899999999
Q ss_pred HHHHhhCCCCccHHHHHHHhhhhHhhhc---CCC--CcccCCCCCCCCCCCcccCCCCC-----C----------CCCCH
Q 021118 105 KAVEAMCPGVVSCADILALSARDAVALS---GGP--TWDVPKGRKDGRISKATDTRQLP-----A----------PTFNI 164 (317)
Q Consensus 105 ~~le~~cp~~VScADilalAar~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~lP-----~----------p~~~~ 164 (317)
+++.. ..||.||+|+||+..|||.+ ||| .+++.+||.|............| + .....
T Consensus 504 ~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~ 580 (716)
T TIGR00198 504 AEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPE 580 (716)
T ss_pred HHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHH
Confidence 99842 27999999999999999998 898 57889999999876432212222 1 12235
Q ss_pred HHHHHHHHHcCCChhhhhhhhcC-ccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCC
Q 021118 165 SQLQQSFSQRGLSMADLVALSGG-HSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSS 243 (317)
Q Consensus 165 ~~l~~~F~~~Gl~~~dlVaLsGa-HTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~t 243 (317)
+.|++.|.++|||++|||||+|| |++|+.|..+ +.| ..+ .+
T Consensus 581 ~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G-----------------------~~T--------~~ 622 (716)
T TIGR00198 581 ELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG-----------------------VFT--------DR 622 (716)
T ss_pred HHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC-----------------------CCc--------CC
Confidence 66899999999999999999999 5999988532 111 111 57
Q ss_pred ccccChHHHHHhhcCc--------------------c---cc--ccccccccChhHHHHHHHHhhCh--HHHHHHHHHHH
Q 021118 244 TTVFDNAYYKLLLQGK--------------------S---LF--SSDQSLLTTPKTKALVSKFARSK--SAFENAFVQSM 296 (317)
Q Consensus 244 p~~FDN~Yy~~l~~~~--------------------g---ll--~SD~~L~~d~~t~~~V~~yA~~~--~~F~~~Fa~Am 296 (317)
|.+|||.||+||+... | ++ .+|..|..|++.|++|+.||+|+ +.|++||++||
T Consensus 623 p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw 702 (716)
T TIGR00198 623 VGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAW 702 (716)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999998621 2 22 67999999999999999999997 89999999999
Q ss_pred HHhHcc
Q 021118 297 IRMSSI 302 (317)
Q Consensus 297 ~Km~~l 302 (317)
.|+.++
T Consensus 703 ~Klm~l 708 (716)
T TIGR00198 703 TKVMNL 708 (716)
T ss_pred HHHHhC
Confidence 999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.6e-33 Score=286.20 Aligned_cols=218 Identities=20% Similarity=0.239 Sum_probs=179.1
Q ss_pred HHHHHHHHcCCCcchhhHHhhhccccc-------cCCCce-EeecCCCCCCCCCCCCCCC--Cc-chhhhHHHHHHHHHh
Q 021118 41 NAVKKAMKNDKTVPAALLRMHFHDCFI-------RGCDAS-VLLESKGKNTAEKDGPPNI--SL-HAFYVIDNAKKAVEA 109 (317)
Q Consensus 41 ~~v~~~~~~~~~~a~~lLRL~FHDcfv-------~GcDaS-ill~~~~~~~~E~~~~~N~--~L-~g~~~I~~iK~~le~ 109 (317)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +| +.+++++.||++.+.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 556777777778899999999999986 899999 8886 699999999 88 689999999999965
Q ss_pred hC--CCCccHHHHHHHhhhhHhhhc---CC--CCcccCCCCCCCCCCCcccC---CCCCCCC------------CCHHHH
Q 021118 110 MC--PGVVSCADILALSARDAVALS---GG--PTWDVPKGRKDGRISKATDT---RQLPAPT------------FNISQL 167 (317)
Q Consensus 110 ~c--p~~VScADilalAar~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l 167 (317)
.- ...||.||+|+||+..|||.+ || |.+++.+||.|......... ..+|.+. ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 32 236999999999999999998 68 99999999999987543321 1356532 234779
Q ss_pred HHHHHHcCCChhhhhhhhcCc-cccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccc
Q 021118 168 QQSFSQRGLSMADLVALSGGH-SLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTV 246 (317)
Q Consensus 168 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~ 246 (317)
++.|.++|||++|||||+||| ++|..|-.++ .| ..+ .+|.+
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G-----------------------~~T--------~~p~~ 637 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG-----------------------VFT--------DRPGV 637 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC-----------------------CCc--------CCCCc
Confidence 999999999999999999997 7888773210 01 111 57999
Q ss_pred cChHHHHHhhcC----------c----------c---c--cccccccccChhHHHHHHHHhhC--hHHHHHHHHHHHHHh
Q 021118 247 FDNAYYKLLLQG----------K----------S---L--FSSDQSLLTTPKTKALVSKFARS--KSAFENAFVQSMIRM 299 (317)
Q Consensus 247 FDN~Yy~~l~~~----------~----------g---l--l~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km 299 (317)
|||.||+||+.- . | + +.+|..|.+|++.|++|+.||+| ++.|++||++||.|+
T Consensus 638 fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kv 717 (726)
T PRK15061 638 LTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKV 717 (726)
T ss_pred cccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999851 1 1 1 47899999999999999999999 999999999999999
Q ss_pred Hcc
Q 021118 300 SSI 302 (317)
Q Consensus 300 ~~l 302 (317)
+++
T Consensus 718 mel 720 (726)
T PRK15061 718 MNL 720 (726)
T ss_pred HhC
Confidence 987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-28 Score=242.58 Aligned_cols=233 Identities=19% Similarity=0.301 Sum_probs=186.7
Q ss_pred CcchhhHHhhhccccc-------cCCCc-eEeecCCCCCCCCCCCCCCCCc-chhhhHHHHHHHHHhhCCCCccHHHHHH
Q 021118 52 TVPAALLRMHFHDCFI-------RGCDA-SVLLESKGKNTAEKDGPPNISL-HAFYVIDNAKKAVEAMCPGVVSCADILA 122 (317)
Q Consensus 52 ~~a~~lLRL~FHDcfv-------~GcDa-Sill~~~~~~~~E~~~~~N~~L-~g~~~I~~iK~~le~~cp~~VScADila 122 (317)
..+|-+|||+||-+.+ +|..+ ... +.++.++|.|.+| +++.++..||+++ +..+|+||+|.
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G~qR------FaPlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~i 162 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR------FAPLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLII 162 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCCcee------cccccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhh
Confidence 5789999999999976 33332 232 4578899999999 7999999999998 56999999999
Q ss_pred HhhhhHhhhcCCCCcccCCCCCCCCCCCc--------------------------------------ccCCCCCCCCCCH
Q 021118 123 LSARDAVALSGGPTWDVPKGRKDGRISKA--------------------------------------TDTRQLPAPTFNI 164 (317)
Q Consensus 123 lAar~Av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~~~~~lP~p~~~~ 164 (317)
|++..|++.+|++.+.+..||.|-..+.. +.++..|+|-.+.
T Consensus 163 LaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA 242 (730)
T COG0376 163 LAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAA 242 (730)
T ss_pred hhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhH
Confidence 99999999999999999999999877664 2235678999999
Q ss_pred HHHHHHHHHcCCChhhhhhhh-cCccccccccCCcccccccCCCCCCCCCCCCHHHHHHHh--hhCCCC--CCCCCCCcc
Q 021118 165 SQLQQSFSQRGLSMADLVALS-GGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLR--HVCPAH--NKVKNAGAT 239 (317)
Q Consensus 165 ~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~--~~Cp~~--~~~~~~~~~ 239 (317)
.+++..|++|+++.+|.|||+ ||||+|++|...-.+-+ +++|.-.+--.+-|- +.|..+ .+. .+..+
T Consensus 243 ~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G~dt-itsGl 314 (730)
T COG0376 243 RDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWANTYGSGKGPDT-ITSGL 314 (730)
T ss_pred HHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccccccCCCcCccc-ccccc
Confidence 999999999999999999998 69999999976422221 356655444444442 334322 111 12222
Q ss_pred ---CCCCccccChHHHHHhhcC-----------------------------------ccccccccccccChhHHHHHHHH
Q 021118 240 ---LDSSTTVFDNAYYKLLLQG-----------------------------------KSLFSSDQSLLTTPKTKALVSKF 281 (317)
Q Consensus 240 ---D~~tp~~FDN~Yy~~l~~~-----------------------------------~gll~SD~~L~~d~~t~~~V~~y 281 (317)
-..||++|||+||.+|+.. ..+|.+|.+|..||..+++.++|
T Consensus 315 E~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf 394 (730)
T COG0376 315 EGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALRFDPEYEKISRRF 394 (730)
T ss_pred cccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhhcChHHHHHHHHH
Confidence 2368999999999999863 14789999999999999999999
Q ss_pred hhChHHHHHHHHHHHHHhHcc
Q 021118 282 ARSKSAFENAFVQSMIRMSSI 302 (317)
Q Consensus 282 A~~~~~F~~~Fa~Am~Km~~l 302 (317)
..|++.|.+.|++||-||.+-
T Consensus 395 ~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 395 LEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred HhCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999876
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.53 E-value=6.6e-14 Score=138.81 Aligned_cols=214 Identities=22% Similarity=0.306 Sum_probs=158.9
Q ss_pred HHHHHHHHcCCCcchhhHHhhhccccc-------cCCCce-EeecCCCCCCCCCCCCCCC--Cc-chhhhHHHHHHHHHh
Q 021118 41 NAVKKAMKNDKTVPAALLRMHFHDCFI-------RGCDAS-VLLESKGKNTAEKDGPPNI--SL-HAFYVIDNAKKAVEA 109 (317)
Q Consensus 41 ~~v~~~~~~~~~~a~~lLRL~FHDcfv-------~GcDaS-ill~~~~~~~~E~~~~~N~--~L-~g~~~I~~iK~~le~ 109 (317)
..++..+.+..-....|+-.+|--+-+ +|.+|. |.|. +.|+++.|. -| +.+.+++.|.++.+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 456677777777888999999988765 688887 6675 589999997 45 67999999999886
Q ss_pred hCCCCccHHHHHHHhhhhHhhhc---CCCC--cccCCCCCCCCCCCcccC--CCC-CC------------CCCCHHHHHH
Q 021118 110 MCPGVVSCADILALSARDAVALS---GGPT--WDVPKGRKDGRISKATDT--RQL-PA------------PTFNISQLQQ 169 (317)
Q Consensus 110 ~cp~~VScADilalAar~Av~~~---GGP~--~~v~~GR~D~~~s~~~~~--~~l-P~------------p~~~~~~l~~ 169 (317)
..||.||+|+|++..||+.+ +|-. +++..||.|+........ ..| |- ...+-.-|++
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 47999999999999999974 6765 456789999976554321 111 11 1122345788
Q ss_pred HHHHcCCChhhhhhhhcCcc-ccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCCCCCCCCCCccCCCCccccC
Q 021118 170 SFSQRGLSMADLVALSGGHS-LGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPAHNKVKNAGATLDSSTTVFD 248 (317)
Q Consensus 170 ~F~~~Gl~~~dlVaLsGaHT-iG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D~~tp~~FD 248 (317)
+-+-.+||..||++|.||-- +|. |+.|+ . ..|.. ..|..+.
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~-----------n~g~s------------------------~-~GVfT--~~pg~Lt 643 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS------------------------K-HGVFT--DRPGVLT 643 (730)
T ss_pred HHHHhccCCccceEEEcceEeecc-----------CCCCC------------------------c-cceec--cCccccc
Confidence 88889999999999998753 333 22221 1 23333 3678888
Q ss_pred hHHHHHhhcC----------cccc---------------ccccccccChhHHHHHHHHhhC--hHHHHHHHHHHHHHhHc
Q 021118 249 NAYYKLLLQG----------KSLF---------------SSDQSLLTTPKTKALVSKFARS--KSAFENAFVQSMIRMSS 301 (317)
Q Consensus 249 N~Yy~~l~~~----------~gll---------------~SD~~L~~d~~t~~~V~~yA~~--~~~F~~~Fa~Am~Km~~ 301 (317)
|.||.||+.- ++++ ..|..+-+++..|.+.+.||++ ++.|.+||++||.|..+
T Consensus 644 ndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn 723 (730)
T COG0376 644 NDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMN 723 (730)
T ss_pred chhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 8888888752 1121 4788888889999999999986 78999999999999987
Q ss_pred c
Q 021118 302 I 302 (317)
Q Consensus 302 l 302 (317)
+
T Consensus 724 ~ 724 (730)
T COG0376 724 L 724 (730)
T ss_pred c
Confidence 6
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=63.87 E-value=63 Score=31.68 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=42.7
Q ss_pred ccHHHHHHHhhhhHhh--hcCCCCcccCCCCCCCCCCCcccCCCCCC----CCCCHHHHHHHHHHcCCC----------h
Q 021118 115 VSCADILALSARDAVA--LSGGPTWDVPKGRKDGRISKATDTRQLPA----PTFNISQLQQSFSQRGLS----------M 178 (317)
Q Consensus 115 VScADilalAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~----------~ 178 (317)
|.|-=.+.+....|+. .+|-..+..+.||-+...-.+......+. +-..+.++.+.|++.|+. .
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 4444444444444443 35777889999998654322211111111 123567888899988875 4
Q ss_pred hhhhhhhcCcc
Q 021118 179 ADLVALSGGHS 189 (317)
Q Consensus 179 ~dlVaLsGaHT 189 (317)
+|+..|.|+|.
T Consensus 241 ~qi~~laG~D~ 251 (333)
T PTZ00411 241 GEILELAGCDK 251 (333)
T ss_pred HHHHHHHCCCE
Confidence 56666666653
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=41.77 E-value=3.7e+02 Score=26.89 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=38.5
Q ss_pred CccHHHHHHHhhhhHhh--hcCCCCcccCCCCCCCCCCCcccCCCCCCCC----CCHHHHHHHHHHcCCCh
Q 021118 114 VVSCADILALSARDAVA--LSGGPTWDVPKGRKDGRISKATDTRQLPAPT----FNISQLQQSFSQRGLSM 178 (317)
Q Consensus 114 ~VScADilalAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~----~~~~~l~~~F~~~Gl~~ 178 (317)
.|.|-=.+.+....|+. .+|-..+..+.||.|...-.......+|... ..+.++.+.|++.|+..
T Consensus 154 GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 154 GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 34554445555555444 3588889999999877432211101234332 24778888998888753
No 21
>PRK05269 transaldolase B; Provisional
Probab=39.90 E-value=2.2e+02 Score=27.67 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred ccHHHHHHHhhhhHhh--hcCCCCcccCCCCCCCCCCCcccC-C---CCCCCCCCHHHHHHHHHHcCCChh
Q 021118 115 VSCADILALSARDAVA--LSGGPTWDVPKGRKDGRISKATDT-R---QLPAPTFNISQLQQSFSQRGLSMA 179 (317)
Q Consensus 115 VScADilalAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~-~---~lP~p~~~~~~l~~~F~~~Gl~~~ 179 (317)
|.|-=.+.+....|+. .+|-..+..+.||-|...-..... . .--++-..+.++.+.|++.|+..+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 4444444444444433 357788999999987542211100 0 011233467888999999998754
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=39.14 E-value=2.2e+02 Score=27.68 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=71.9
Q ss_pred ccHHHHHHHhhhhHhh--hcCCCCcccCCCCCCCCCCCccc----CCCCCCCCCCHHHHHHHHHHcCCCh----------
Q 021118 115 VSCADILALSARDAVA--LSGGPTWDVPKGRKDGRISKATD----TRQLPAPTFNISQLQQSFSQRGLSM---------- 178 (317)
Q Consensus 115 VScADilalAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~----~~~lP~p~~~~~~l~~~F~~~Gl~~---------- 178 (317)
|+|-=.+.|....|+. .+|-..+..+.||-|-..-.... ....-++-..+.++.+.|++.|+..
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 228 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNK 228 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCH
Confidence 3333334444444433 45888899999998663221110 0011123356788889999999764
Q ss_pred hhhhhhhcCccccccccCCcccccccCCCCCCCCCCCCHHHHHHHhhhCCC-C---CCCCCCCccCCCCccccChHHHHH
Q 021118 179 ADLVALSGGHSLGFSHCSSFQNRIHNFNATLDIDPSISPSFATSLRHVCPA-H---NKVKNAGATLDSSTTVFDNAYYKL 254 (317)
Q Consensus 179 ~dlVaLsGaHTiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~-~---~~~~~~~~~D~~tp~~FDN~Yy~~ 254 (317)
+|+..|.|+|.+ +++|...++|...-.. . .+. .....+ ..|..+|...|+.
T Consensus 229 ~qv~~laG~d~~-----------------------Ti~p~ll~~L~~~~~~~~~~l~~~-~~~~~~-~~~~~~~e~~fr~ 283 (317)
T TIGR00874 229 EEILALAGCDRL-----------------------TISPALLDELKESTGPVERKLDPE-SAKKVD-KQPIILDESEFRF 283 (317)
T ss_pred HHHHHHHCCCeE-----------------------eCCHHHHHHHHhCCCCcCccCCcc-cccccc-ccCCCCCHHHHHH
Confidence 444444444422 4667777777543110 0 000 000011 2345678888875
Q ss_pred hhcCccccccccccccChhHHHHHHHHhhChHHHH
Q 021118 255 LLQGKSLFSSDQSLLTTPKTKALVSKFARSKSAFE 289 (317)
Q Consensus 255 l~~~~gll~SD~~L~~d~~t~~~V~~yA~~~~~F~ 289 (317)
.+.. |. +.. .....-++.|+.|+....
T Consensus 284 ~~~~------d~-ma~-ekl~~gir~F~~d~~~Le 310 (317)
T TIGR00874 284 LHNE------DA-MAT-EKLAEGIRKFAADQEKLE 310 (317)
T ss_pred HhCC------Cc-chH-HHHHHHHHHHHHHHHHHH
Confidence 4333 21 111 223445677777765544
No 23
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.99 E-value=46 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCcchhhHHhhhccc
Q 021118 36 ETAVTNAVKKAMKNDKTVPAALLRMHFHDC 65 (317)
Q Consensus 36 e~iVr~~v~~~~~~~~~~a~~lLRL~FHDc 65 (317)
.-|.|+.+++.++++|.+-...||+.+---
T Consensus 22 ~fiark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 22 FFIARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 447899999999999999999999988644
No 24
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=1.2e+02 Score=25.50 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhccCCCC---------ccCCCccccccCCccHHHHHHHHHHHHHHcCCCcchhhHHhhhccccccCCCce
Q 021118 3 AVVALIFALAMFPVSSP---------VSALSSNYYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFHDCFIRGCDAS 73 (317)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---------~~~l~~~fY~~sCp~~e~iVr~~v~~~~~~~~~~a~~lLRL~FHDcfv~GcDaS 73 (317)
++++-|++|.+++.-++ +..-+.+|-.++--+ |.-|++.+...+.....+.|.=||+++-.
T Consensus 5 ~li~tc~lL~~f~aqga~feep~as~aqpgs~~~~~~~vhD-eeHIkeHLegki~~~a~mtpeqlqfHYF~--------- 74 (144)
T KOG4065|consen 5 LLISTCFLLLVFEAQGAKFEEPAASFAQPGSMGLDKKEVHD-EEHIKEHLEGKIEKVAKMTPEQLQFHYFS--------- 74 (144)
T ss_pred hHHHHHHHHHHHhcChhhhcCchhhhcCCcccccccccccc-HHHHHHHHhcccchhhhCCHHHHhhhhhh---------
Confidence 35556777655443111 112345666665544 55677888888877778889888877632
Q ss_pred EeecCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 021118 74 VLLESKGKNTAEKDGPPNISLHAFYVIDNAKKA 106 (317)
Q Consensus 74 ill~~~~~~~~E~~~~~N~~L~g~~~I~~iK~~ 106 (317)
-.|-..|+-|.|++++..|--.
T Consensus 75 -----------MHDldknn~lDGiEl~kAiTH~ 96 (144)
T KOG4065|consen 75 -----------MHDLDKNNFLDGIELLKAITHT 96 (144)
T ss_pred -----------hhccCcCCcchHHHHHHHHHHH
Confidence 2233456777899988777543
No 25
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=23.96 E-value=61 Score=25.22 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHcc
Q 021118 287 AFENAFVQSMIRMSSI 302 (317)
Q Consensus 287 ~F~~~Fa~Am~Km~~l 302 (317)
...++|..||.||+.+
T Consensus 2 ~m~~~F~~am~KlavL 17 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVL 17 (80)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3567999999999987
No 26
>PRK12346 transaldolase A; Provisional
Probab=22.43 E-value=1e+02 Score=30.06 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=44.9
Q ss_pred CccHHHHHHHhhhhHhh--hcCCCCcccCCCCCCCCCCCcccCCCCCC----CCCCHHHHHHHHHHcCCC----------
Q 021118 114 VVSCADILALSARDAVA--LSGGPTWDVPKGRKDGRISKATDTRQLPA----PTFNISQLQQSFSQRGLS---------- 177 (317)
Q Consensus 114 ~VScADilalAar~Av~--~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~---------- 177 (317)
.|+|-=.+.|....|+. .+|-..+..+.||-|...-.......++. +-..+.++.++|++.|+.
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 45555555565555554 46888899999998864322110011211 234577888899888875
Q ss_pred hhhhhhhhcCc
Q 021118 178 MADLVALSGGH 188 (317)
Q Consensus 178 ~~dlVaLsGaH 188 (317)
.+|+.+|.|+|
T Consensus 229 ~~qi~alaG~d 239 (316)
T PRK12346 229 TEQILALAGCD 239 (316)
T ss_pred HHHHHHHhCCC
Confidence 45566666655
No 27
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=21.55 E-value=55 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=16.1
Q ss_pred ccccCCccHHHHHHHHHHHHHHcCCCcchhhHHhhhc
Q 021118 27 YYSKTCPKLETAVTNAVKKAMKNDKTVPAALLRMHFH 63 (317)
Q Consensus 27 fY~~sCp~~e~iVr~~v~~~~~~~~~~a~~lLRL~FH 63 (317)
.|+.+||+.. +.+...+.|.-|-+.+-
T Consensus 108 wYDqsCPdGF----------v~khk~C~P~~LemYY~ 134 (186)
T PF06387_consen 108 WYDQSCPDGF----------VLKHKRCTPLTLEMYYT 134 (186)
T ss_pred eecccCCCcc----------eeecccccchhhhheec
Confidence 5888999964 22344555555555443
Done!