Query 021119
Match_columns 317
No_of_seqs 162 out of 1167
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 2.7E-40 5.8E-45 305.6 29.1 240 24-265 85-326 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 1.9E-38 4.1E-43 287.8 26.1 230 21-252 7-244 (244)
3 PF06027 DUF914: Eukaryotic pr 100.0 7.8E-27 1.7E-31 219.5 25.8 264 1-272 42-316 (334)
4 PLN00411 nodulin MtN21 family 99.9 3.2E-23 6.8E-28 198.1 31.8 251 4-261 44-328 (358)
5 PF08449 UAA: UAA transporter 99.9 7.4E-22 1.6E-26 184.9 26.1 235 29-266 62-302 (303)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 4.2E-22 9.1E-27 186.2 22.5 223 28-263 62-295 (302)
7 PRK11453 O-acetylserine/cystei 99.9 3.2E-20 6.9E-25 173.5 29.1 225 30-264 57-290 (299)
8 PTZ00343 triose or hexose phos 99.9 2.3E-20 5E-25 178.2 26.3 221 30-262 113-349 (350)
9 TIGR00950 2A78 Carboxylate/Ami 99.9 7.1E-20 1.5E-24 166.8 28.0 213 26-256 41-259 (260)
10 TIGR00803 nst UDP-galactose tr 99.9 2E-21 4.2E-26 174.0 15.9 221 34-259 2-222 (222)
11 KOG3912 Predicted integral mem 99.9 1.2E-20 2.5E-25 169.2 18.6 230 31-261 86-334 (372)
12 PRK11272 putative DMT superfam 99.9 8.9E-19 1.9E-23 163.1 27.8 234 6-261 40-285 (292)
13 PRK11689 aromatic amino acid e 99.8 6.8E-19 1.5E-23 164.2 25.6 243 2-261 32-287 (295)
14 PRK15430 putative chlorampheni 99.8 2.8E-18 6.2E-23 160.1 27.0 205 34-260 76-284 (296)
15 TIGR03340 phn_DUF6 phosphonate 99.8 6.9E-18 1.5E-22 156.3 20.5 213 30-258 61-280 (281)
16 PRK10532 threonine and homoser 99.8 1.2E-16 2.6E-21 149.0 28.1 210 28-262 68-282 (293)
17 KOG1581 UDP-galactose transpor 99.7 2.5E-16 5.5E-21 143.1 17.8 228 29-261 81-313 (327)
18 COG0697 RhaT Permeases of the 99.7 6.7E-15 1.4E-19 134.8 27.0 212 32-262 70-288 (292)
19 KOG4510 Permease of the drug/m 99.7 8.9E-19 1.9E-23 156.3 -1.5 226 23-259 89-323 (346)
20 KOG1580 UDP-galactose transpor 99.7 2.3E-15 5.1E-20 132.3 13.9 229 29-264 83-316 (337)
21 KOG1441 Glucose-6-phosphate/ph 99.6 1.9E-16 4.1E-21 147.8 4.0 228 30-269 82-315 (316)
22 TIGR00688 rarD rarD protein. T 99.6 6.6E-13 1.4E-17 121.2 25.1 178 34-236 73-255 (256)
23 KOG1583 UDP-N-acetylglucosamin 99.6 1.7E-15 3.7E-20 136.0 4.3 235 29-268 62-321 (330)
24 KOG2765 Predicted membrane pro 99.5 6.6E-13 1.4E-17 124.0 19.1 229 34-270 162-399 (416)
25 KOG2766 Predicted membrane pro 99.5 1.3E-15 2.7E-20 135.5 0.0 234 31-279 78-314 (336)
26 TIGR00776 RhaT RhaT L-rhamnose 99.4 1.3E-10 2.9E-15 108.3 24.1 204 38-260 66-287 (290)
27 COG2962 RarD Predicted permeas 99.4 1.6E-10 3.5E-15 105.3 23.5 208 32-262 73-284 (293)
28 KOG1582 UDP-galactose transpor 99.3 1.7E-11 3.7E-16 110.2 13.1 221 31-261 106-332 (367)
29 KOG1443 Predicted integral mem 99.3 3.2E-11 7E-16 110.1 12.8 215 34-261 87-315 (349)
30 COG5006 rhtA Threonine/homoser 99.3 2.6E-09 5.7E-14 95.4 23.7 230 8-261 46-282 (292)
31 KOG1442 GDP-fucose transporter 99.3 4.8E-13 1E-17 120.2 -1.7 228 36-272 107-338 (347)
32 KOG1444 Nucleotide-sugar trans 99.2 2.1E-10 4.6E-15 105.7 15.3 230 28-271 74-310 (314)
33 PF13536 EmrE: Multidrug resis 99.1 4E-09 8.7E-14 84.5 13.2 76 30-106 33-109 (113)
34 PF03151 TPT: Triose-phosphate 99.0 1.8E-08 4E-13 84.3 15.3 138 121-261 1-153 (153)
35 KOG4314 Predicted carbohydrate 98.8 1.2E-07 2.5E-12 82.1 13.1 212 38-261 60-276 (290)
36 COG5070 VRG4 Nucleotide-sugar 98.8 9.4E-08 2E-12 84.1 12.6 231 28-265 65-300 (309)
37 PF00892 EamA: EamA-like trans 98.7 1.4E-07 3.1E-12 75.3 9.4 74 29-102 51-125 (126)
38 COG2510 Predicted membrane pro 98.6 4.6E-08 9.9E-13 78.9 5.1 74 30-103 66-139 (140)
39 PRK15051 4-amino-4-deoxy-L-ara 98.6 6.5E-07 1.4E-11 71.7 10.8 65 39-103 45-109 (111)
40 PF05653 Mg_trans_NIPA: Magnes 98.6 2.2E-06 4.7E-11 80.4 15.7 66 40-105 59-124 (300)
41 PF06800 Sugar_transport: Suga 98.5 2.3E-05 5E-10 71.9 20.3 217 29-258 43-268 (269)
42 PF00892 EamA: EamA-like trans 98.4 5.3E-06 1.1E-10 66.1 11.3 119 131-260 2-125 (126)
43 PRK02971 4-amino-4-deoxy-L-ara 98.2 3.8E-05 8.2E-10 63.1 11.6 73 34-106 50-125 (129)
44 PRK02971 4-amino-4-deoxy-L-ara 98.1 0.0002 4.2E-09 58.9 15.6 122 121-265 3-126 (129)
45 COG2510 Predicted membrane pro 98.1 2.3E-05 5E-10 63.4 9.4 130 122-260 5-138 (140)
46 TIGR00950 2A78 Carboxylate/Ami 98.1 2.2E-05 4.7E-10 71.3 10.6 71 29-99 189-260 (260)
47 PF03151 TPT: Triose-phosphate 98.0 8.1E-05 1.7E-09 62.1 11.7 71 31-101 81-151 (153)
48 PRK10452 multidrug efflux syst 98.0 0.00017 3.8E-09 58.4 12.9 76 30-105 29-105 (120)
49 PRK10532 threonine and homoser 98.0 8.5E-05 1.8E-09 69.2 12.5 71 35-105 212-283 (293)
50 TIGR03340 phn_DUF6 phosphonate 98.0 0.00027 5.8E-09 65.4 15.5 129 122-261 3-135 (281)
51 COG2076 EmrE Membrane transpor 98.0 0.00027 5.8E-09 55.7 13.0 91 13-103 9-103 (106)
52 PRK11689 aromatic amino acid e 98.0 5.3E-05 1.1E-09 70.7 10.1 74 31-104 215-288 (295)
53 PRK11431 multidrug efflux syst 97.9 0.00039 8.5E-09 55.0 13.4 91 13-103 8-102 (105)
54 PRK09541 emrE multidrug efflux 97.9 0.00037 8E-09 55.7 13.4 90 15-104 11-104 (110)
55 PRK11272 putative DMT superfam 97.9 6.9E-05 1.5E-09 69.8 9.9 76 29-104 210-286 (292)
56 PRK10650 multidrug efflux syst 97.9 0.00058 1.3E-08 54.4 13.2 73 30-102 34-107 (109)
57 PTZ00343 triose or hexose phos 97.9 0.00018 3.9E-09 68.9 12.2 66 37-102 282-347 (350)
58 PRK15430 putative chlorampheni 97.7 0.00018 4E-09 67.1 9.6 67 38-104 220-286 (296)
59 PRK11453 O-acetylserine/cystei 97.7 0.00027 5.9E-09 66.0 10.6 74 32-105 215-289 (299)
60 PLN00411 nodulin MtN21 family 97.7 0.00018 3.9E-09 69.1 9.5 63 43-105 268-330 (358)
61 KOG2922 Uncharacterized conser 97.7 0.00025 5.5E-09 65.9 9.1 66 40-105 73-138 (335)
62 TIGR00817 tpt Tpt phosphate/ph 97.6 0.00011 2.5E-09 68.5 6.8 66 40-105 230-295 (302)
63 PRK10452 multidrug efflux syst 97.6 0.00094 2E-08 54.1 10.7 43 221-263 63-105 (120)
64 COG5006 rhtA Threonine/homoser 97.5 0.00078 1.7E-08 60.8 10.3 90 10-99 185-278 (292)
65 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.00076 1.6E-08 62.9 10.7 74 30-103 210-288 (290)
66 TIGR00688 rarD rarD protein. T 97.5 0.0057 1.2E-07 55.6 15.3 132 121-259 3-140 (256)
67 PF00893 Multi_Drug_Res: Small 97.4 0.0016 3.6E-08 50.3 9.7 82 13-94 8-93 (93)
68 PRK15051 4-amino-4-deoxy-L-ara 97.3 0.002 4.2E-08 51.5 9.4 57 204-260 52-108 (111)
69 COG0697 RhaT Permeases of the 97.3 0.0024 5.2E-08 58.1 10.3 76 29-104 212-288 (292)
70 PRK13499 rhamnose-proton sympo 97.2 0.25 5.4E-06 47.3 26.5 116 21-136 58-190 (345)
71 PRK09541 emrE multidrug efflux 97.2 0.0068 1.5E-07 48.4 10.6 42 221-262 63-104 (110)
72 PF08449 UAA: UAA transporter 97.1 0.02 4.3E-07 53.6 15.5 121 134-262 14-137 (303)
73 PF10639 UPF0546: Uncharacteri 97.0 0.0018 3.8E-08 51.9 5.9 71 31-101 41-112 (113)
74 PF13536 EmrE: Multidrug resis 96.8 0.014 3E-07 46.4 10.0 57 204-261 50-106 (113)
75 PF05653 Mg_trans_NIPA: Magnes 96.8 0.013 2.7E-07 55.1 11.1 117 119-261 6-122 (300)
76 COG2076 EmrE Membrane transpor 96.8 0.08 1.7E-06 41.8 13.3 57 205-261 46-103 (106)
77 PRK10650 multidrug efflux syst 96.6 0.15 3.2E-06 40.6 14.2 55 206-260 52-107 (109)
78 PRK11431 multidrug efflux syst 96.5 0.037 8.1E-07 43.8 9.9 43 219-261 60-102 (105)
79 PF07857 DUF1632: CEO family ( 96.4 0.018 4E-07 52.6 9.0 66 201-266 67-139 (254)
80 PF06027 DUF914: Eukaryotic pr 96.2 0.23 4.9E-06 47.4 15.5 61 201-261 91-151 (334)
81 PF04142 Nuc_sug_transp: Nucle 95.9 0.068 1.5E-06 48.7 10.0 70 201-270 29-98 (244)
82 PRK13499 rhamnose-proton sympo 95.8 0.27 5.8E-06 47.1 13.8 136 119-262 6-154 (345)
83 KOG1441 Glucose-6-phosphate/ph 95.8 0.004 8.7E-08 58.7 1.4 72 32-103 236-307 (316)
84 TIGR00803 nst UDP-galactose tr 95.7 0.015 3.2E-07 51.8 4.7 66 34-99 155-220 (222)
85 KOG1580 UDP-galactose transpor 95.2 0.05 1.1E-06 48.9 6.3 75 29-103 239-313 (337)
86 PF04657 DUF606: Protein of un 95.0 1.7 3.8E-05 35.9 15.6 126 123-258 4-138 (138)
87 PF00893 Multi_Drug_Res: Small 94.8 0.16 3.4E-06 39.1 7.3 47 206-252 46-93 (93)
88 PF10639 UPF0546: Uncharacteri 94.6 0.083 1.8E-06 42.3 5.3 53 207-259 59-112 (113)
89 KOG1581 UDP-galactose transpor 94.1 0.085 1.8E-06 49.1 5.0 78 24-101 233-311 (327)
90 COG2962 RarD Predicted permeas 94.0 0.4 8.7E-06 44.4 9.2 76 29-104 209-284 (293)
91 PF06800 Sugar_transport: Suga 93.5 0.19 4.2E-06 46.3 6.3 64 29-92 193-256 (269)
92 KOG4831 Unnamed protein [Funct 92.6 0.3 6.5E-06 38.4 5.2 81 21-101 39-123 (125)
93 COG3238 Uncharacterized protei 89.3 12 0.00026 31.5 15.3 133 121-261 6-146 (150)
94 KOG2922 Uncharacterized conser 89.2 0.15 3.3E-06 47.8 0.8 71 190-260 65-135 (335)
95 PF04342 DUF486: Protein of un 89.2 3.3 7.1E-05 32.6 8.0 85 16-100 13-105 (108)
96 COG4975 GlcU Putative glucose 87.8 0.043 9.3E-07 49.6 -3.6 204 38-258 66-282 (288)
97 PF06379 RhaT: L-rhamnose-prot 87.4 8.7 0.00019 36.6 11.3 136 118-262 5-154 (344)
98 PF04657 DUF606: Protein of un 85.5 5.7 0.00012 32.8 8.1 70 31-100 64-138 (138)
99 KOG2765 Predicted membrane pro 84.3 2.5 5.5E-05 40.6 6.1 63 211-273 181-243 (416)
100 COG4975 GlcU Putative glucose 83.6 0.27 5.9E-06 44.6 -0.7 64 29-92 207-270 (288)
101 PF04342 DUF486: Protein of un 83.5 2.3 5E-05 33.5 4.5 38 222-259 69-106 (108)
102 KOG4510 Permease of the drug/m 81.6 0.54 1.2E-05 43.2 0.5 71 28-98 250-320 (346)
103 COG5070 VRG4 Nucleotide-sugar 79.9 5.7 0.00012 35.8 6.3 87 15-101 195-294 (309)
104 COG3169 Uncharacterized protei 78.0 11 0.00023 29.4 6.4 38 224-261 78-115 (116)
105 COG3169 Uncharacterized protei 77.6 32 0.00069 26.9 9.4 60 42-101 53-113 (116)
106 KOG2234 Predicted UDP-galactos 75.7 77 0.0017 30.4 15.7 61 200-260 103-163 (345)
107 PLN00028 nitrate transmembrane 74.3 79 0.0017 31.2 13.5 21 294-314 454-474 (476)
108 KOG3912 Predicted integral mem 71.4 18 0.00039 33.8 7.3 39 223-261 120-158 (372)
109 KOG1444 Nucleotide-sugar trans 71.1 22 0.00049 33.5 8.1 73 32-104 229-301 (314)
110 COG3238 Uncharacterized protei 62.3 44 0.00095 28.1 7.4 73 31-103 69-146 (150)
111 PRK02237 hypothetical protein; 61.1 82 0.0018 25.0 9.0 72 31-104 32-106 (109)
112 PF02694 UPF0060: Uncharacteri 58.9 52 0.0011 26.0 6.8 45 60-104 60-104 (107)
113 PF00558 Vpu: Vpu protein; In 58.8 4.6 0.0001 30.3 0.9 48 256-309 24-75 (81)
114 KOG4831 Unnamed protein [Funct 58.6 11 0.00024 29.8 2.9 43 217-259 81-123 (125)
115 TIGR02865 spore_II_E stage II 58.4 2.6E+02 0.0056 29.9 16.6 45 57-101 10-54 (764)
116 PF06123 CreD: Inner membrane 58.1 2E+02 0.0043 28.5 12.5 64 72-146 312-377 (430)
117 KOG1443 Predicted integral mem 56.1 39 0.00086 31.9 6.6 68 34-101 246-313 (349)
118 COG4452 CreD Inner membrane pr 56.0 80 0.0017 30.7 8.7 70 12-88 359-431 (443)
119 PF13000 Acatn: Acetyl-coenzym 55.5 1.1E+02 0.0024 31.1 10.1 27 134-165 59-85 (544)
120 PF03348 Serinc: Serine incorp 54.8 1.3E+02 0.0028 29.8 10.5 23 241-263 283-306 (429)
121 PHA03049 IMV membrane protein; 53.6 24 0.00053 25.3 3.7 17 244-260 5-21 (68)
122 TIGR00806 rfc RFC reduced fola 50.6 1.1E+02 0.0024 31.0 9.2 25 246-270 432-456 (511)
123 COG4040 Predicted membrane pro 49.1 54 0.0012 24.2 5.0 49 5-53 23-71 (85)
124 PRK02237 hypothetical protein; 46.3 1.4E+02 0.003 23.7 7.3 44 216-259 58-103 (109)
125 PF02694 UPF0060: Uncharacteri 45.1 90 0.002 24.7 6.1 46 214-259 54-101 (107)
126 COG1742 Uncharacterized conser 44.6 1.2E+02 0.0026 23.9 6.7 46 59-104 60-105 (109)
127 PRK04570 cell division protein 44.5 63 0.0014 29.2 5.8 30 249-282 15-44 (243)
128 PRK11715 inner membrane protei 44.3 3.4E+02 0.0073 27.0 12.3 57 79-146 325-383 (436)
129 KOG1582 UDP-galactose transpor 43.9 2.3E+02 0.0051 26.5 9.5 53 53-105 282-334 (367)
130 PRK13108 prolipoprotein diacyl 42.1 1.3E+02 0.0029 30.0 8.4 31 241-272 254-284 (460)
131 PF09946 DUF2178: Predicted me 41.1 6.9 0.00015 31.2 -0.6 37 246-282 28-64 (111)
132 PF10710 DUF2512: Protein of u 39.0 1.6E+02 0.0035 24.3 7.1 59 211-269 54-115 (136)
133 PF08507 COPI_assoc: COPI asso 37.1 2.3E+02 0.0049 23.0 12.1 29 227-256 72-100 (136)
134 PHA02680 ORF090 IMV phosphoryl 36.5 45 0.00097 25.3 3.1 36 245-282 53-88 (91)
135 KOG1583 UDP-N-acetylglucosamin 33.1 47 0.001 31.0 3.3 45 225-269 101-145 (330)
136 PF10951 DUF2776: Protein of u 32.3 4.4E+02 0.0095 24.9 12.7 120 12-151 52-184 (347)
137 PF05961 Chordopox_A13L: Chord 31.5 45 0.00097 24.0 2.3 18 244-261 5-22 (68)
138 KOG1442 GDP-fucose transporter 30.5 12 0.00027 34.7 -0.8 68 31-98 255-322 (347)
139 PF11346 DUF3149: Protein of u 30.1 34 0.00074 22.3 1.4 34 237-270 7-41 (42)
140 TIGR00910 2A0307_GadC glutamat 29.8 87 0.0019 31.5 5.0 12 254-265 452-463 (507)
141 TIGR03144 cytochr_II_ccsB cyto 29.0 4.3E+02 0.0092 23.7 18.4 26 119-145 101-126 (243)
142 COG1971 Predicted membrane pro 28.9 1.2E+02 0.0025 26.7 4.9 41 221-261 46-87 (190)
143 PF06570 DUF1129: Protein of u 28.3 2.3E+02 0.0049 24.8 6.8 6 77-82 195-200 (206)
144 PF13795 HupE_UreJ_2: HupE / U 26.5 3.9E+02 0.0085 22.5 10.0 53 24-76 27-80 (151)
145 PRK11469 hypothetical protein; 26.1 1.3E+02 0.0028 26.2 4.8 42 220-261 45-87 (188)
146 PF03547 Mem_trans: Membrane t 25.9 5.7E+02 0.012 24.1 9.9 6 234-239 115-120 (385)
147 KOG3762 Predicted transporter 25.4 1.6E+02 0.0035 30.4 5.8 37 246-282 533-569 (618)
148 COG3274 Predicted O-acyltransf 25.2 3.9E+02 0.0086 25.5 8.0 94 7-100 121-217 (332)
149 PRK14766 lipoprotein signal pe 24.1 47 0.001 29.4 1.6 15 264-278 183-197 (201)
150 PRK01637 hypothetical protein; 23.5 2.9E+02 0.0063 25.4 6.9 18 243-260 248-265 (286)
151 COG2271 UhpC Sugar phosphate p 23.3 1.2E+02 0.0027 30.0 4.5 55 219-278 163-218 (448)
152 TIGR01167 LPXTG_anchor LPXTG-m 23.0 1.4E+02 0.0031 17.6 3.3 21 240-260 9-29 (34)
153 PF10131 PTPS_related: 6-pyruv 22.8 8.7E+02 0.019 25.2 12.1 78 18-98 38-115 (616)
154 PF09656 PGPGW: Putative trans 22.6 2.7E+02 0.0057 19.1 5.8 44 87-144 5-48 (53)
155 PF03188 Cytochrom_B561: Eukar 21.9 4.1E+02 0.0088 21.1 9.3 53 86-139 41-93 (137)
156 PF08507 COPI_assoc: COPI asso 21.8 1.4E+02 0.003 24.3 4.0 15 245-259 96-110 (136)
157 KOG4314 Predicted carbohydrate 20.3 1.1E+02 0.0023 27.3 3.0 44 225-268 89-132 (290)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=305.61 Aligned_cols=240 Identities=32% Similarity=0.508 Sum_probs=210.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 24 LLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 24 ~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
...++|+.++.++||++|+++|+++|+++.++|++++|+..|++++.||+|+.++|+||++++||.++++.+.|+++++.
T Consensus 85 i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 85 ILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 44445678899999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCCCCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 021119 104 RSLPEGTSA--LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS 181 (317)
Q Consensus 104 ~~~~~~~~~--~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~ 181 (317)
+...+.+.. ........|+..++.+|++|++++||.||++|+. +.+.|+||.+++++|+++++..+.......+. +
T Consensus 165 ~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~-~ 242 (345)
T KOG2234|consen 165 PSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTILLQDGEAIN-E 242 (345)
T ss_pred cCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHhhccccccc-c
Confidence 432211111 1122346799999999999999999999999987 68999999999999999999876543212222 5
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 182 FDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 182 ~~~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
.|+++||++.+|+.++.+|.+|+++++++||+|++.|.++++++++++++.|+++||.++|..+++|+.+|+.++++|+.
T Consensus 243 ~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 243 YGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred CCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCc
Q 021119 262 PLSK 265 (317)
Q Consensus 262 ~~~~ 265 (317)
+..+
T Consensus 323 ~P~~ 326 (345)
T KOG2234|consen 323 YPAR 326 (345)
T ss_pred CCcc
Confidence 4333
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.9e-38 Score=287.82 Aligned_cols=230 Identities=32% Similarity=0.517 Sum_probs=202.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 021119 21 SFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISV 100 (317)
Q Consensus 21 ~~~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~i 100 (317)
-...++++|+.+++++||++|+++|++.|++++++||+++|+++|+++++||++++++||||++++||+|+++.++|+++
T Consensus 7 ~~~~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 7 KDEVWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVL 86 (244)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHhe
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCC--CC------CChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 021119 101 NQLRSLPEGTSA--LG------LPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI 172 (317)
Q Consensus 101 v~~~~~~~~~~~--~~------~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~ 172 (317)
++.++....+.. .+ ......|+++++++++++|+++||.||++|+. +.++|.||+|++++|++++++....
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~ 165 (244)
T PF04142_consen 87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLL 165 (244)
T ss_pred eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 988765331110 11 11245799999999999999999999999997 6899999999999999998876432
Q ss_pred HHhhcCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 021119 173 TAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 252 (317)
Q Consensus 173 ~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV 252 (317)
.. .+.....|+++||++++|..++.++++|+++++++||+|++.|.++++++++++.+.++++||.++|..+++|..+|
T Consensus 166 ~~-~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 166 SD-GSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cc-ccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11 11223457899999999999999999999999999999999999999999999999999999999999999998764
No 3
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=7.8e-27 Score=219.51 Aligned_cols=264 Identities=16% Similarity=0.187 Sum_probs=196.6
Q ss_pred CCcchhhHHHHHHHHHH-HHH-HHHH-----HHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHH
Q 021119 1 MPRTANLYRMVLFYLQM-PVI-SFIL-----LQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIAL 73 (317)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-p~~-~~~~-----~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~tal 73 (317)
.|-+|.++-.++...+. |.. .|+- ...+++||+|++.|+++...|.+...|++|++.+.++++.++.++++++
T Consensus 42 ~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~ 121 (334)
T PF06027_consen 42 IPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMI 121 (334)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHH
Confidence 36677776654433332 221 1211 1123789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 021119 74 LLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH 153 (317)
Q Consensus 74 ls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~ 153 (317)
+|+++||||+++.|++|+++.+.|+.++...+...++...+.+....|++++++++++.|+++|++|+..|+. +...
T Consensus 122 LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~ 198 (334)
T PF06027_consen 122 LSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVE 198 (334)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHH
Confidence 9999999999999999999999999998887654332222223456799999999999999999999999875 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH-HH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 021119 154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL-IC---NNAAQGILSSFFFKYADTILKKYSSTVATIFT 229 (317)
Q Consensus 154 ~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-il---~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t 229 (317)
...+++++|.+++.+.+. +.|..+...+ .|+...+.. +. ......+.+..++++.++..-+....++.+++
T Consensus 199 ~lg~~Glfg~ii~~iq~~---ile~~~i~~~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~a 273 (334)
T PF06027_consen 199 FLGMLGLFGFIISGIQLA---ILERSGIESI--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYA 273 (334)
T ss_pred HHHHHHHHHHHHHHHHHH---heehhhhhcc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHH
Confidence 445778888888776543 2443321111 233332222 11 12223345667788888888888888899999
Q ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Q 021119 230 GLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKN 272 (317)
Q Consensus 230 ~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~ 272 (317)
.++++++||+++++.+++|.++|++|..+|+...++.++++++
T Consensus 274 li~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~~~ 316 (334)
T PF06027_consen 274 LIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEARRN 316 (334)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccccchh
Confidence 9999999999999999999999999999999855555444433
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.93 E-value=3.2e-23 Score=198.07 Aligned_cols=251 Identities=13% Similarity=0.081 Sum_probs=174.0
Q ss_pred chhhHHH-HHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHH
Q 021119 4 TANLYRM-VLFYLQMPVISFILL------QAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK 76 (317)
Q Consensus 4 ~~~~~~~-~~~~~~~p~~~~~~~------~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~ 76 (317)
+--.||+ ++..+++|+....-. .++|++.++++.+++.+.++.+.++|++|++++.++++.++.|++++++++
T Consensus 44 ~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~ 123 (358)
T PLN00411 44 PFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAI 123 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 3456785 446677777643211 124556778888887777888999999999999999999999999999999
Q ss_pred HH------hcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC--------------C--CCCCCChhhhHHHHHHHHHHHHHH
Q 021119 77 II------MKRRFSIIQWEALALLLIGISVNQLRSLPEG--------------T--SALGLPVATGAYLYTLIFVTVPSL 134 (317)
Q Consensus 77 l~------L~erls~~q~lal~l~~~Gv~iv~~~~~~~~--------------~--~~~~~~~~~~G~~l~l~a~~~sal 134 (317)
++ +|||++++||+|++++++|+.++...+.... . ...+......|.+++++++++||+
T Consensus 124 ~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~ 203 (358)
T PLN00411 124 IFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSV 203 (358)
T ss_pred HHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 99 6999999999999999999998765322100 0 000111124588999999999999
Q ss_pred HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----H
Q 021119 135 ASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----F 209 (317)
Q Consensus 135 ~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~ 209 (317)
+.++.|+..+++ .+....+.+...++.+... ......++.........++... ..+++.++.. ..+| .
T Consensus 204 ~~il~~~~~~~~--~~~~~~t~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t-~lay~lw~~~ 276 (358)
T PLN00411 204 SFILQAHIMSEY--PAAFTVSFLYTVCVSIVTS---MIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT-SVYYVIHSWT 276 (358)
T ss_pred HHHHHHHHHHHc--CcHhHHHHHHHHHHHHHHH---HHHHHHccCCcccceeccchHH-HHHHHHHHHH-HHHHHHHHHH
Confidence 999999988776 2222222222222222211 1122233321111122233332 2355555543 2344 4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 210 FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 210 ~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+++.++...+...++.|+++.++|++++||++++.+++|+++|+.|+++.++
T Consensus 277 v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 277 VRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888999999999999999999999999999999999999876
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.90 E-value=7.4e-22 Score=184.89 Aligned_cols=235 Identities=17% Similarity=0.256 Sum_probs=179.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 108 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~ 108 (317)
+++++++.+++++++++.+.+.+++|+|.++.+++++++|+++++++.+++|||++++||+++++.++|+++....+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 62 IPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC--cccccc
Q 021119 109 GTSALGL-PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP--SSFDIL 185 (317)
Q Consensus 109 ~~~~~~~-~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~--~~~~~~ 185 (317)
....... .....|+.+++++.++.|+.++++||+++++ +.+.+....+..+++.++..+.... +..++ +...+.
T Consensus 142 ~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~~--l~~~~~~~~~~f~ 218 (303)
T PF08449_consen 142 SSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLFL--LPTGEFRSAIRFI 218 (303)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHH--HHhhHhhHHHHHH
Confidence 2111111 1112499999999999999999999999987 4455545455566777765554432 00111 111122
Q ss_pred cccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 186 QGHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 186 ~~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
..++...+ ...+..+++...+.+..+..++.......+++.+++.++|+++||+++++.+++|.++++.|..+|+..
T Consensus 219 ~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 219 SAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 22222111 122344555566677778889999999999999999999999999999999999999999999999985
Q ss_pred CCcC
Q 021119 263 LSKV 266 (317)
Q Consensus 263 ~~~~ 266 (317)
++|+
T Consensus 299 ~~k~ 302 (303)
T PF08449_consen 299 KKKK 302 (303)
T ss_pred hccC
Confidence 4443
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.90 E-value=4.2e-22 Score=186.19 Aligned_cols=223 Identities=11% Similarity=0.130 Sum_probs=162.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
+||+++.+..|++++.++.+.+++++|+++++++++.++.|+++++++++++|||+++++|.+++++++|+.+....+.
T Consensus 62 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~- 140 (302)
T TIGR00817 62 SALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL- 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc-
Confidence 3567778888999999999999999999999999999999999999999999999999999999999999987642111
Q ss_pred CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-c-ccc
Q 021119 108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-F-DIL 185 (317)
Q Consensus 108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~-~-~~~ 185 (317)
+.+..|+++.+++++++|+++++.||..+++ +.+......+....+.++.+|... ..++... . +..
T Consensus 141 --------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~---~~~~~~~~~~~~~ 208 (302)
T TIGR00817 141 --------SFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAF---ITEGPPFLPHGFM 208 (302)
T ss_pred --------cccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHH
Confidence 1234699999999999999999999987732 112222333334455555444322 2333210 0 000
Q ss_pred c---ccch-HHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 021119 186 Q---GHSK-ATMLLICNNAAQG-----ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM 256 (317)
Q Consensus 186 ~---~~~~-~~~~~il~~ai~g-----~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv 256 (317)
. ..+. ..+...+..+++. .......++.++.+.+....+.++++.++|++++||++|..+++|+++++.|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv 288 (302)
T TIGR00817 209 QAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGV 288 (302)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHH
Confidence 0 0111 1121122222211 11223567888888899999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 021119 257 HQFFSPL 263 (317)
Q Consensus 257 ~ly~~~~ 263 (317)
++|++.+
T Consensus 289 ~l~~~~k 295 (302)
T TIGR00817 289 FLYSRVK 295 (302)
T ss_pred HHHHHHh
Confidence 9998743
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.88 E-value=3.2e-20 Score=173.47 Aligned_cols=225 Identities=17% Similarity=0.118 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 30 NNVLLAVPAFLY-AINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 30 ~~~~~~~~all~-~~~n~l~f~al~~-l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
++......+++. ..+..+.|.+++| .|++.+.++.++.|+++++++++++|||++++||++++++++|+.++..++..
T Consensus 57 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~ 136 (299)
T PRK11453 57 PLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN 136 (299)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC
Confidence 333344445543 4566677889988 68999999999999999999999999999999999999999999988754321
Q ss_pred CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCccc-ccc
Q 021119 108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSF-DIL 185 (317)
Q Consensus 108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~-~~~l~~~~~~~g~~~~-~~~ 185 (317)
+.+.+..|+++.+++++++|+++++.||..++. .++...... .+..... .+........+++... ..+
T Consensus 137 ------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (299)
T PRK11453 137 ------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHS--TRPAVMSLV--VWSALIPIIPFFVASLILDGSATMIHSL 206 (299)
T ss_pred ------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccchhHHH--HHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 111234699999999999999999999976543 122111111 1111111 1221112223332110 112
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 186 QGHSKATMLLICNNAAQGILSSFFF-----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 186 ~~~~~~~~~~il~~ai~g~~v~~~~-----k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
..++...|..+++.++.+...++.+ ++.++...+...++.|+++.+++++++||++++.+++|+++|+.|+++-.
T Consensus 207 ~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 207 VTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 3445567778888888887777655 44556667777889999999999999999999999999999999999876
Q ss_pred CCCC
Q 021119 261 SPLS 264 (317)
Q Consensus 261 ~~~~ 264 (317)
.+.+
T Consensus 287 ~~~~ 290 (299)
T PRK11453 287 FGLR 290 (299)
T ss_pred cchh
Confidence 6443
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.88 E-value=2.3e-20 Score=178.21 Aligned_cols=221 Identities=12% Similarity=0.162 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG 109 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~ 109 (317)
+++..+..|+++...+...+.|+++.+++.+++++++.|+++++++++++|||+++++++++++.++|+.+....+.
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~--- 189 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL--- 189 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---
Confidence 55668888999987777788999999999999999999999999999999999999999999999999999864221
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--chhHHHHHHH--HHHHHHHHHHHHHHHHhhcCCccccc-
Q 021119 110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYD--TSIYHQNLFL--YGYGAIFNFLGIVITAMFKGPSSFDI- 184 (317)
Q Consensus 110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~--~~~~~~~~~l--~~~g~i~~~~~l~~~~~~~g~~~~~~- 184 (317)
+.+..|+++++++++++|+++++.||.+++... .+....+.+. ..+|.++.+|... ..|+......
T Consensus 190 ------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~---~~e~~~~~~~~ 260 (350)
T PTZ00343 190 ------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL---FFEGKKWVPVW 260 (350)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHH
Confidence 124579999999999999999999999876411 0111122322 4466666665433 1333210000
Q ss_pred ------ccccch-HHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 021119 185 ------LQGHSK-ATMLLICNNAAQGILS----SFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVF 253 (317)
Q Consensus 185 ------~~~~~~-~~~~~il~~ai~g~~v----~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi 253 (317)
+..+.. ..+..++..++..... .+.+++.++.+.+...++.++++.++|+++|||++|..+++|.++++
T Consensus 261 ~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii 340 (350)
T PTZ00343 261 TNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAI 340 (350)
T ss_pred HHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHH
Confidence 111111 1111222222222221 23567788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 021119 254 ISMHQFFSP 262 (317)
Q Consensus 254 ~gv~ly~~~ 262 (317)
.|+++|+..
T Consensus 341 ~Gv~lYs~~ 349 (350)
T PTZ00343 341 LGALLYSLF 349 (350)
T ss_pred HHHHHHhhc
Confidence 999999873
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.88 E-value=7.1e-20 Score=166.75 Aligned_cols=213 Identities=15% Similarity=0.112 Sum_probs=157.3
Q ss_pred HhhhhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 26 QAARNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 26 ~~~~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+++++++++.+.+.+ ..+++.+.|+|++|+|+++.+++.++.|+++++++++++|||++++||.+++++++|+.++..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 41 PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 455677777777765 5799999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 021119 105 SLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDI 184 (317)
Q Consensus 105 ~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~ 184 (317)
+.. + ....|+.+.++++++++.++++.||..++. +.+....+.+...++.++..+.. ...+...
T Consensus 121 ~~~------~--~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~--- 184 (260)
T TIGR00950 121 GNL------S--INPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQFTGWVLLLGALLLLPFA----WFLGPNP--- 184 (260)
T ss_pred Ccc------c--ccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHHHHHHHHHHHHHHHHHH----HhcCCCC---
Confidence 311 1 134688999999999999999999987654 22222222222334444333222 1222211
Q ss_pred ccccchHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 021119 185 LQGHSKATMLLICNNAAQGIL-----SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISM 256 (317)
Q Consensus 185 ~~~~~~~~~~~il~~ai~g~~-----v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv 256 (317)
..+...|..+++.+..+.. ..+..|+.++.......++.|+++.+++++++||+++..+++|..+++.|+
T Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 185 --QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 1133344334444444333 344567778888888889999999999999999999999999999999886
No 10
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.87 E-value=2e-21 Score=174.04 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 113 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~ 113 (317)
+.+|+..|+.+|.+.++++.+.++...+.. +.+.+.++++....++++++..||.++.....|+..++.++..+...
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~-- 78 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTL-- 78 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccc--
Confidence 568999999999999999999999999999 99999999999999999999999999999999998886554221111
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH
Q 021119 114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM 193 (317)
Q Consensus 114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 193 (317)
.......|..+.+.++.+++++++|.|+..|++ +..++.++.++++++.+.+........ .+.....+++++++...|
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLLWSD-GTLISNFGFFIGYPTAVW 156 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHhhcc-cchhhccCcccCCchHHH
Confidence 111245687888888999999999999987765 567899999999999886554332210 011112345678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 194 LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 194 ~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
..++.+++++.++++++||.|++++.+..+++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 11
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=169.25 Aligned_cols=230 Identities=15% Similarity=0.171 Sum_probs=171.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC-C
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE-G 109 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~-~ 109 (317)
.+.+..|++|+.....++|.|+.+++++.+|+++...++|+++||..+|+++++.+||+++....+|++++...+.-. .
T Consensus 86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~ 165 (372)
T KOG3912|consen 86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT 165 (372)
T ss_pred cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence 445778999999999999999999999999999999999999999999999999999999999999999997764311 1
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhhcCCc----cccc
Q 021119 110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYG-AIFNFLGIVITAMFKGPS----SFDI 184 (317)
Q Consensus 110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g-~i~~~~~l~~~~~~~g~~----~~~~ 184 (317)
++..+......|+++.+.+...-|++.|++||.+|+++-.|..... +-+.|| ++++++.+....+..|.+ ..+.
T Consensus 166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg-~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~ 244 (372)
T KOG3912|consen 166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVG-WEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV 244 (372)
T ss_pred CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhh-hhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence 1112222345799999999999999999999999998444443333 447788 455554444333333311 1222
Q ss_pred ccccch-------HHHHHH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 021119 185 LQGHSK-------ATMLLI------CNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISI 251 (317)
Q Consensus 185 ~~~~~~-------~~~~~i------l~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~l 251 (317)
++.|.- ...+.+ ...|.++..--.+.|+.++.++.+...+++.+.+++++.+++|.+...++.|+++
T Consensus 245 ~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFli 324 (372)
T KOG3912|consen 245 LEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLI 324 (372)
T ss_pred hhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 322210 000011 1112222223346688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 021119 252 VFISMHQFFS 261 (317)
Q Consensus 252 Vi~gv~ly~~ 261 (317)
.+.|+.+||.
T Consensus 325 Li~Gi~lY~~ 334 (372)
T KOG3912|consen 325 LIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.85 E-value=8.9e-19 Score=163.15 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=164.6
Q ss_pred hhHHHH-HHHHHHHHHHHHHHH----hhhhhHHHHHHHHHH-HHHHHHHHHHH-hcCCHHHHHHHhhhHHHHHHHHHHHH
Q 021119 6 NLYRMV-LFYLQMPVISFILLQ----AARNNVLLAVPAFLY-AINNYLKFIMQ-LYFNPATVKMLSNLKVFVIALLLKII 78 (317)
Q Consensus 6 ~~~~~~-~~~~~~p~~~~~~~~----~~~~~~~~~~~all~-~~~n~l~f~al-~~l~~s~~~ll~~~~pi~talls~l~ 78 (317)
..+|+. +..+.+|+..+ .+ .+|+++.....+.+. ..++.+.+++. ++.+++..+++.++.|+++++++++
T Consensus 40 ~~~R~~~a~l~ll~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~- 116 (292)
T PRK11272 40 AGVRFLIAGILLLAFLLL--RGHPLPTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL- 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 457774 33444444322 22 234555566677664 57888899999 9999999999999999999999985
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHH
Q 021119 79 MKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFL 158 (317)
Q Consensus 79 L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l 158 (317)
+|||++++||.|++++++|+.++..++.. +....|+++.+++++++|+++++.||..++ .+......++
T Consensus 117 ~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~ 185 (292)
T PRK11272 117 FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEM 185 (292)
T ss_pred hcccCchhHHHHHHHHHHhHHHHhcCccc--------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHH
Confidence 69999999999999999999888543211 112468899999999999999999996442 2333333333
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHH
Q 021119 159 YGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----FFKYADTILKKYSSTVATIFTGLAS 233 (317)
Q Consensus 159 ~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~~k~~~ai~~~~~~~l~~v~t~l~s 233 (317)
..+.+...+.. ...++. .....+...|..+++.++.++++++ ..|+.++.......++.|+++.+++
T Consensus 186 -~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~ 257 (292)
T PRK11272 186 -LAAGVVLLIAS---LLSGER----LTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLG 257 (292)
T ss_pred -HHHHHHHHHHH---HHcCCc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 23333222211 112111 0111234456666777776655544 3456667777777889999999999
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 234 AALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 234 ~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
++++||++|..+++|+++++.|+++.+.
T Consensus 258 ~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 258 TGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.85 E-value=6.8e-19 Score=164.23 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=161.7
Q ss_pred CcchhhHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHhc----CCHHHHHHHhhhHHHHHHHHH
Q 021119 2 PRTANLYRM-VLFYLQMPVISFILLQAARNNVLLAVPAF-LYAINNYLKFIMQLY----FNPATVKMLSNLKVFVIALLL 75 (317)
Q Consensus 2 ~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~al-l~~~~n~l~f~al~~----l~~s~~~ll~~~~pi~talls 75 (317)
|-+...+|+ ++..+..|+..+ .+.+|++++..+.+. .++.++.+.|.++++ .++++.+++.++.|+++++++
T Consensus 32 P~~~~~~R~~~a~l~l~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~ 109 (295)
T PRK11689 32 PVGGAAMIYSVSGLLLLLTVGF--PRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFA 109 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHccc--cccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHH
Confidence 445567787 345555554311 111233344444444 466778888877754 688899999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC-CC-CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 021119 76 KIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG-TS-ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH 153 (317)
Q Consensus 76 ~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~-~~-~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~ 153 (317)
++++|||++++||.+++++++|+.++..++...+ +. ..+......|+++++++++++|+++++.||..++. ++..
T Consensus 110 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~- 186 (295)
T PRK11689 110 VLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGIT- 186 (295)
T ss_pred HHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--Cchh-
Confidence 9999999999999999999999998876532100 00 00111123588999999999999999999976543 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHH
Q 021119 154 QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIF 228 (317)
Q Consensus 154 ~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~ 228 (317)
......+..+ .+. ...++.. ...++...|..+++.++ ....+ +.+|+.++...+...++.|++
T Consensus 187 --~~~~~~~~~l-~~~----~~~~~~~----~~~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~ 254 (295)
T PRK11689 187 --LFFILTALAL-WIK----YFLSPQP----AMVFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVL 254 (295)
T ss_pred --HHHHHHHHHH-HHH----HHHhcCc----cccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHH
Confidence 1111122211 111 1122211 12234444544455443 23333 455677788888889999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 229 TGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 229 t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+.+++++++||+++..+++|+++|+.|+++...
T Consensus 255 a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 255 SAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999876644
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.84 E-value=2.8e-18 Score=160.12 Aligned_cols=205 Identities=15% Similarity=0.181 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 113 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~ 113 (317)
....+++...++.+.|+|++++|+++++++.++.|+++++++++++|||++++||.+++++++|+.++..++ ++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~---~~--- 149 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF---GS--- 149 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence 344456678899999999999999999999999999999999999999999999999999999999886432 11
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH
Q 021119 114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM 193 (317)
Q Consensus 114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 193 (317)
. . .+.+++++++|++.++.||..++. .......+.+...++.+. ... ..+... ......+...+
T Consensus 150 -~--~----~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~~~--~~~~~~~~~~~ 213 (296)
T PRK15430 150 -L--P----IIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIY----LFA--IADSST--SHMGQNPMSLN 213 (296)
T ss_pred -c--c----HHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHH----HHH--HccCCc--ccccCCcHHHH
Confidence 1 1 356778899999999988864322 112222222222222221 110 111110 00111111112
Q ss_pred HHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 194 LLICN----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 194 ~~il~----~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
..++. .++...+....+++.++...+...++.|+++.+++++++||+++..+++|+++|+.|+.+..
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 22222 22333445566788888888999999999999999999999999999999999987755443
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.80 E-value=6.9e-18 Score=156.30 Aligned_cols=213 Identities=12% Similarity=0.111 Sum_probs=141.4
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119 30 NNVLLAV-PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 108 (317)
Q Consensus 30 ~~~~~~~-~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~ 108 (317)
++++..+ .++....++.+.++|+++.|++..+.+.++.|+++++++++++|||++++||+|+.+++.|+.++..++...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~ 140 (281)
T TIGR03340 61 TFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ 140 (281)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3444444 455678999999999999999999999999999999999999999999999999999999999886543210
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcccccccc
Q 021119 109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFN-FLGIVITAMFKGPSSFDILQG 187 (317)
Q Consensus 109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~-~~~l~~~~~~~g~~~~~~~~~ 187 (317)
....|..+.+++++++++++++.|+..++. +......+...++.+.. .+........++.. ..
T Consensus 141 --------~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~- 204 (281)
T TIGR03340 141 --------HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS----MF- 204 (281)
T ss_pred --------cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHHHHHhccc----hh-
Confidence 112366788999999999999888764332 11111111112222221 12111111111110 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Q 021119 188 HSKATMLLICNNAAQGILSSFF-----FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQ 258 (317)
Q Consensus 188 ~~~~~~~~il~~ai~g~~v~~~-----~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~l 258 (317)
.....+..+.+.+......++. +++.++.......++.|+++.++|++++||+++..+++|+++|+.|+++
T Consensus 205 ~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 205 PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 1111222333344333333433 3444444444456679999999999999999999999999999999875
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.79 E-value=1.2e-16 Score=149.01 Aligned_cols=210 Identities=11% Similarity=-0.053 Sum_probs=149.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
+|+++.....++++...+.+.|++++|+|++.+.++.++.|+++++++. ||.++.+ ++.++++|+.++..++..
T Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~--~~~i~~~Gv~li~~~~~~ 141 (293)
T PRK10532 68 KEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFV--WVVLAVLGLWFLLPLGQD 141 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHH--HHHHHHHHHheeeecCCC
Confidence 4566777788888888999999999999999999999999999998873 5555544 566778999877543321
Q ss_pred CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 021119 108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQG 187 (317)
Q Consensus 108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~ 187 (317)
. .+ .+..|.++.+++++++|++.++.||..+++ .+ .....+ .+++.+...+.. ..++.. ..
T Consensus 142 ~----~~--~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~-~~~~~~-~~~~~~~l~~~~----~~~~~~-----~~ 202 (293)
T PRK10532 142 V----SH--VDLTGAALALGAGACWAIYILSGQRAGAEH--GP-ATVAIG-SLIAALIFVPIG----ALQAGE-----AL 202 (293)
T ss_pred c----cc--CChHHHHHHHHHHHHHHHHHHHHHHHhccC--Cc-hHHHHH-HHHHHHHHHHHH----HHccCc-----cc
Confidence 1 11 134699999999999999999999986654 22 222333 233333322221 122110 11
Q ss_pred cchHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 188 HSKATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 188 ~~~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
++...|...++.++.+.+.+ +.+++.++...+...++.|+++.+++++++||++++.+++|+++|+.|+..+...
T Consensus 203 ~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 203 WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 23334434445555555444 4556677888888899999999999999999999999999999999998887653
No 17
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.5e-16 Score=143.12 Aligned_cols=228 Identities=15% Similarity=0.211 Sum_probs=183.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 108 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~ 108 (317)
.++++|...++...+...++|-|++|++-++..+.+++|.+.+++...++.|+|++.++++..++...|+.+....+..+
T Consensus 81 apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 81 APLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred CchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999887765433
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cccccc
Q 021119 109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQ 186 (317)
Q Consensus 109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~--~~~~~~ 186 (317)
+.+..+.+.+.+|+.++...-++.++.+..++++.|+. ..+.+.+.....+++++.+...++ .+|.- ...+..
T Consensus 161 s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li----~qg~~~~av~F~~ 235 (327)
T KOG1581|consen 161 SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI----LQGHLLPAVSFIK 235 (327)
T ss_pred CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh----cCCCCchHHHHHH
Confidence 22333445567899999999999999999999999976 555555555666788888776643 23321 112222
Q ss_pred ccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 187 GHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 187 ~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
.++...+ +.-.+.++++.++.+.+...++++-....+++-+++.++|.++||+++++.+++|..+|+.|+++=..
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 3332222 23345677888888888888888888888899999999999999999999999999999999886554
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.72 E-value=6.7e-15 Score=134.80 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=148.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119 32 VLLAVP-AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK-IIMKRRFSIIQWEALALLLIGISVNQLRSLPEG 109 (317)
Q Consensus 32 ~~~~~~-all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~-l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~ 109 (317)
++..+. +++....+.+.+.++++++++..+++.++.|++++++++ +++|||+++++|.++++.++|+.++..++..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~ 149 (292)
T COG0697 70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence 344444 446779999999999999999999999999999999997 777999999999999999999999987664221
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccc
Q 021119 110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHS 189 (317)
Q Consensus 110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~ 189 (317)
+ + ...|..+.+++++++|++.++.|++. +. .+......+.. .+.. .+......... + ...+
T Consensus 150 ~-----~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~----~~~~~~~~~~~---~--~~~~ 210 (292)
T COG0697 150 I-----L-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQL-LLAL----LLLLLFFLSGF---G--APIL 210 (292)
T ss_pred h-----H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHH-HHHH----HHHHHHHhccc---c--ccCC
Confidence 1 0 34688999999999999999999987 32 22211110111 1111 11111111111 0 1222
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 190 KATMLLICNNAAQGILSS-----FFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 190 ~~~~~~il~~ai~g~~v~-----~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
...|..+.+.++.+..++ +.++..++...+....+.++++.+++++++||.++..+++|.++++.|+.+.+..
T Consensus 211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444443333 3445555556666667899999999999999999999999999999999998774
No 19
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.70 E-value=8.9e-19 Score=156.30 Aligned_cols=226 Identities=13% Similarity=0.118 Sum_probs=160.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119 23 ILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 102 (317)
Q Consensus 23 ~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~ 102 (317)
.++..+.+.+++.+.+++.+..-.+.||+++|++.+.+.++..+.|.+|.+|+|.+|||+.++..-++..+.+.||+++.
T Consensus 89 ~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 89 PVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred eeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 33455555667888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCC-----CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021119 103 LRSLPEGTSA-----LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFK 177 (317)
Q Consensus 103 ~~~~~~~~~~-----~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~ 177 (317)
.|+...++.. .+..-...|....+.++++.|-..+..|++.|+- +.+ +...++...+.+.++++... .
T Consensus 169 RPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~-msvsyf~~i~lV~s~I~~~~---i- 241 (346)
T KOG4510|consen 169 RPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA--HAI-MSVSYFSLITLVVSLIGCAS---I- 241 (346)
T ss_pred cCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc--cEE-EEehHHHHHHHHHHHHHHhh---c-
Confidence 8865322211 1111123566777888888888888899987864 111 11123333444444433221 1
Q ss_pred CCcccccccccchHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Q 021119 178 GPSSFDILQGHSKATMLLICNNA----AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVF 253 (317)
Q Consensus 178 g~~~~~~~~~~~~~~~~~il~~a----i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi 253 (317)
|. ....+.+..|.+.++.+ ++++.+...++...+...+.+.+..++++.++.+++|||.||++.+.|+++|+
T Consensus 242 g~----~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vv 317 (346)
T KOG4510|consen 242 GA----VQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVV 317 (346)
T ss_pred cc----eecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeee
Confidence 11 00112222222222222 34455666666666666788899999999999999999999999999999999
Q ss_pred HHHHHh
Q 021119 254 ISMHQF 259 (317)
Q Consensus 254 ~gv~ly 259 (317)
.+....
T Consensus 318 sS~v~~ 323 (346)
T KOG4510|consen 318 SSTVWV 323 (346)
T ss_pred hhHHHH
Confidence 885543
No 20
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.3e-15 Score=132.35 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=171.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPE 108 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~ 108 (317)
.+.+.|+.-++-|.++....+.|+++.|-++..+-++++|+.++++..++.+++++++++.++++.++||++...+...-
T Consensus 83 t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 83 TPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred CcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 44677999999999999999999999999999999999999999999999999999999999999999999998875321
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccc
Q 021119 109 GTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSF--DILQ 186 (317)
Q Consensus 109 ~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~--~~~~ 186 (317)
++. ..+....|.++.+++-.+.++.+..+|++-+.+...+-. ....+.+++++....+++ +.|+.+. .+.+
T Consensus 163 ~g~--e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~-MM~~~NlwStL~Lg~g~l----fTGElweF~yF~~ 235 (337)
T KOG1580|consen 163 GGA--EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS-MMFYTNLWSTLYLGAGLL----FTGELWEFFYFVQ 235 (337)
T ss_pred CCC--cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh-hHHHHHHHHHHHhhhhhe----ehhhHHHHHHHHH
Confidence 110 001123588999999999999999999986665222221 122334566665444443 4444321 1222
Q ss_pred ccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119 187 GHSKATM---LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263 (317)
Q Consensus 187 ~~~~~~~---~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 263 (317)
.++...| +..+...+|++++.....+.+..+.++.++.+..|+.+.|+++|+++++..+|+|..+|+.+...-....
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 3332222 2224455677777777778888888899999999999999999999999999999999999987654433
Q ss_pred C
Q 021119 264 S 264 (317)
Q Consensus 264 ~ 264 (317)
+
T Consensus 316 K 316 (337)
T KOG1580|consen 316 K 316 (337)
T ss_pred C
Confidence 3
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.62 E-value=1.9e-16 Score=147.79 Aligned_cols=228 Identities=14% Similarity=0.198 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEG 109 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~ 109 (317)
++...+..|+.+++...+.+.++++.|.+.+|+++.+.|+++.++++++.+|++++..+++++....||.+....+.
T Consensus 82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~--- 158 (316)
T KOG1441|consen 82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL--- 158 (316)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---
Confidence 45567888999999999999999999999999999999999999999999999999999999999999988876321
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH--HhhcCCcccc-ccc
Q 021119 110 TSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVIT--AMFKGPSSFD-ILQ 186 (317)
Q Consensus 110 ~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~--~~~~g~~~~~-~~~ 186 (317)
..+..|....+.+.+..++.+++.+++++++ +.+..-. ++.-+-..+++..++.. ...||....+ ...
T Consensus 159 ------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~-~~~~~~~--~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~ 229 (316)
T KOG1441|consen 159 ------SFNLFGFISAMISNLAFALRNILSKKLLTSK-GESLNSM--NLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTA 229 (316)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCch--HHHHHhhhHHHHHHhcchHhhhcccceeeeecc
Confidence 2356799999999999999999999999643 1222222 22223333333332211 1233332100 112
Q ss_pred ccchHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119 187 GHSKATMLLICNN---AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263 (317)
Q Consensus 187 ~~~~~~~~~il~~---ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 263 (317)
.|+...+..++.. -..+.....++.+.++++-.++.....++..+.|+++|++++|+...+|.++.+.|+++|++.+
T Consensus 230 ~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 230 PWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK 309 (316)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 3443333222222 1223445556677788888888888888999999999999999999999999999999999965
Q ss_pred CcCCCC
Q 021119 264 SKVKDE 269 (317)
Q Consensus 264 ~~~~~~ 269 (317)
.++|++
T Consensus 310 ~~~~~~ 315 (316)
T KOG1441|consen 310 LKEKKG 315 (316)
T ss_pred hhhhcc
Confidence 555543
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.60 E-value=6.6e-13 Score=121.16 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 113 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~ 113 (317)
....+++...++.+.++|++++|+++++++.++.|+++++++++++|||++++||++++++++|++++..++ ++
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~---~~--- 146 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK---GS--- 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc---CC---
Confidence 566677888999999999999999999999999999999999999999999999999999999999876432 11
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccch-HH
Q 021119 114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK-AT 192 (317)
Q Consensus 114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~-~~ 192 (317)
. . .+.+++++++|++.++.|+..+++ .. +.. .+.+...+.........+.... ...+. ..
T Consensus 147 -~--~----~~~l~aa~~~a~~~i~~~~~~~~~---~~--~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (256)
T TIGR00688 147 -L--P----WEALVLAFSFTAYGLIRKALKNTD---LA--GFC----LETLSLMPVAIYYLLQTDFATV---QQTNPFPI 207 (256)
T ss_pred -c--h----HHHHHHHHHHHHHHHHHhhcCCCC---cc--hHH----HHHHHHHHHHHHHHHHhccCcc---cccCchhH
Confidence 1 1 346788999999999998864321 11 111 1111122211111111111100 01111 13
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 021119 193 MLLICNNAA----QGILSSFFFKYADTILKKYSSTVATIFTGLASAAL 236 (317)
Q Consensus 193 ~~~il~~ai----~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~ll 236 (317)
|..++..++ +..+....+|+.++...+...++.|+++.++++++
T Consensus 208 ~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 208 WLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333 33344556688888899999999999999998764
No 23
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.7e-15 Score=135.95 Aligned_cols=235 Identities=14% Similarity=0.145 Sum_probs=164.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLY-FNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~-l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
-+.+.|++.-.++++.|...++++++ +|.+...+.++..++.+++++++++|+|++.+|+.++++.++|+++....+..
T Consensus 62 iplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~ 141 (330)
T KOG1583|consen 62 IPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSK 141 (330)
T ss_pred CchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCc
Confidence 34456888888888999999999997 89999999999999999999999999999999999999999999988765432
Q ss_pred CCCC----------CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH---
Q 021119 108 EGTS----------ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITA--- 174 (317)
Q Consensus 108 ~~~~----------~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~--- 174 (317)
+... ......-..|+.+...+.+.+|.-++|+|..+|++..+ |..+. +|.-.+++|+++...
T Consensus 142 d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh--~~Eal---FytH~LsLP~Flf~~~di 216 (330)
T KOG1583|consen 142 DGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH--WKEAL---FYTHFLSLPLFLFMGDDI 216 (330)
T ss_pred chhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHH---HHHHHhccchHHHhcchH
Confidence 2111 01111123588888999999999999999999998333 33333 356777777665321
Q ss_pred ------hhcCCc-ccccccccchHHHHHHHHHHHHH-HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Q 021119 175 ------MFKGPS-SFDILQGHSKATMLLICNNAAQG-ILSSFFFKY---ADTILKKYSSTVATIFTGLASAALFGHTLTM 243 (317)
Q Consensus 175 ------~~~g~~-~~~~~~~~~~~~~~~il~~ai~g-~~v~~~~k~---~~ai~~~~~~~l~~v~t~l~s~llfge~lt~ 243 (317)
.+.+++ ..+.+...-+..|..++.+.+.+ .++..++-. .++.+.....+++..++.++|+..|.+++|+
T Consensus 217 v~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~ 296 (330)
T KOG1583|consen 217 VSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTP 296 (330)
T ss_pred HHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCH
Confidence 111111 00111111233444444443333 233322211 1222333344568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCC
Q 021119 244 NFILGISIVFISMHQFFSPLSKVKD 268 (317)
Q Consensus 244 ~~~lG~~lVi~gv~ly~~~~~~~~~ 268 (317)
+.++|+++|+.|..+|....+++|.
T Consensus 297 ~h~lGa~lVF~Gt~~fa~~~~~~~~ 321 (330)
T KOG1583|consen 297 WHWLGAALVFFGTLLFANVWNHPKA 321 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccc
Confidence 9999999999999999987777773
No 24
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.54 E-value=6.6e-13 Score=123.99 Aligned_cols=229 Identities=16% Similarity=0.220 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 113 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~ 113 (317)
-+..+.+-+++|+....|+.+++.+...++++++=+||..++.++.+||+++.|.+++++.+.|++++...+..+.+...
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 34446677899999999999999999999999999999999999999999999999999999999999877653322111
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH----HHHHHHhhcCCcccccccccc
Q 021119 114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFL----GIVITAMFKGPSSFDILQGHS 189 (317)
Q Consensus 114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~----~l~~~~~~~g~~~~~~~~~~~ 189 (317)
. .....|.++.+++++..|.+.+..||-..++ +...-++ .++++.| +++++ .+++-..+ +.+. +.-++
T Consensus 242 a-~~~llG~llaL~sA~~YavY~vllk~~~~~e-g~rvdi~-lffGfvG-LfnllllwP~l~iL~~~-~~e~---F~lP~ 313 (416)
T KOG2765|consen 242 A-SRPLLGNLLALLSALLYAVYTVLLKRKIGDE-GERVDIQ-LFFGFVG-LFNLLLLWPPLIILDFF-GEER---FELPS 313 (416)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccHH-HHHHHHH-HHHHHHHhHHHHHHHHh-ccCc---ccCCC
Confidence 1 1236799999999999999999988865554 1122222 2334344 23333 22222223 3322 22222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCC
Q 021119 190 KATMLLICNNAAQGILSSFFFKY-----ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLS 264 (317)
Q Consensus 190 ~~~~~~il~~ai~g~~v~~~~k~-----~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~ 264 (317)
......++..++.|.+++=++|. .++.+...+.++++.++.+...++=|.++|+.+++|.+.|+.|-+..|.+.+
T Consensus 314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 22222334444666666644443 2444555556678899999999999999999999999999999999888765
Q ss_pred cCCCCC
Q 021119 265 KVKDEP 270 (317)
Q Consensus 265 ~~~~~~ 270 (317)
-.+++|
T Consensus 394 ~~~~~~ 399 (416)
T KOG2765|consen 394 NSKKDP 399 (416)
T ss_pred cccccc
Confidence 555554
No 25
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.52 E-value=1.3e-15 Score=135.46 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT 110 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~ 110 (317)
|..|.+.|+.+.-.|++...|.||++....+++-+-.++.+.+++|++||.|+.+.|..|++.+..|++++..++.-.++
T Consensus 78 ~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd 157 (336)
T KOG2766|consen 78 WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD 157 (336)
T ss_pred HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc
Confidence 44589999999999999999999999999999999999999999999999999999999999999999988877643333
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccch
Q 021119 111 SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSK 190 (317)
Q Consensus 111 ~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~ 190 (317)
...+. ....|+.+++.++.+.|.+++.+|.+.|+. +......++++||.+++.+-+. ++.... ...+|++
T Consensus 158 ~aggs-np~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i----~~~~~~--~tl~w~~ 227 (336)
T KOG2766|consen 158 RAGGS-NPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFI----FERHHV--STLHWDS 227 (336)
T ss_pred ccCCC-CCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHh----hhccce--eeEeehH
Confidence 22222 234688999999999999999999999975 3344455788899998877532 332210 0113332
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCC
Q 021119 191 ATMLL---ICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVK 267 (317)
Q Consensus 191 ~~~~~---il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~ 267 (317)
..... .+.+-+.-+....++|..++..-+.....+-.++.++ ..||-+.+|..++.+..+..|..+|. -|.|
T Consensus 228 ~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs---~re~ 302 (336)
T KOG2766|consen 228 AIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYS---TREK 302 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEee---cccc
Confidence 21111 1111122223333444444333344444455666665 67899999999999999999999994 3666
Q ss_pred CCCCCcCccccC
Q 021119 268 DEPKNISLESVD 279 (317)
Q Consensus 268 ~~~~~~~~~~~~ 279 (317)
||++...=|.+|
T Consensus 303 ~~~e~r~~~v~~ 314 (336)
T KOG2766|consen 303 DEEELRKGQVVS 314 (336)
T ss_pred CcHhhccCcccc
Confidence 666554444444
No 26
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.40 E-value=1.3e-10 Score=108.29 Aligned_cols=204 Identities=16% Similarity=0.084 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhh-hHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHhhcCCCCCCCCC
Q 021119 38 AFLYAINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQ----WEALALLLIGISVNQLRSLPEGTSA 112 (317)
Q Consensus 38 all~~~~n~l~f~al~~l~~s~~~ll~~-~~pi~talls~l~L~erls~~q----~lal~l~~~Gv~iv~~~~~~~~~~~ 112 (317)
+++....|.+++.+.+++..+.+..+.+ +.+++.++++.+++|||.++++ ++|+++.++|+.++...+..+. ..
T Consensus 66 G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-~~ 144 (290)
T TIGR00776 66 GAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-GI 144 (290)
T ss_pred HHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-cc
Confidence 4457799999999999999999999999 9999999999999999999999 9999999999988865542111 00
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH---HHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccc
Q 021119 113 LGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYH---QNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHS 189 (317)
Q Consensus 113 ~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~---~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~ 189 (317)
.+.+...-|+.+.++++++.+++.+..|+. + + ++... +..-+.+.+++++.+ +... .+ + .+
T Consensus 145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~--~~~~~~~~~~~g~~~~~~~~~~~-------~~~~--~~-~--~~ 208 (290)
T TIGR00776 145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G-V--DGLSVLLPQAIGMVIGGIIFNLG-------HILA--KP-L--KK 208 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHc-C-C--CcceehhHHHHHHHHHHHHHHHH-------Hhcc--cc-h--HH
Confidence 000111359999999999999999999875 2 2 23222 211122223222211 1000 00 0 11
Q ss_pred hHHHHHHHHHHHHHHHHHH-----HHH-HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHHHHh
Q 021119 190 KATMLLICNNAAQGILSSF-----FFK-YADTILKKYSSTVATIFTGLASAALFGHTLTMNFI----LGISIVFISMHQF 259 (317)
Q Consensus 190 ~~~~~~il~~ai~g~~v~~-----~~k-~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~----lG~~lVi~gv~ly 259 (317)
...+..++ .++. ..+++ ..+ +.++......++..++.+++.+++++||..+..++ +|.++++.|+.+-
T Consensus 209 ~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 209 YAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 12222222 2222 22222 223 55566667777889999999999999999999999 9999999998765
Q ss_pred c
Q 021119 260 F 260 (317)
Q Consensus 260 ~ 260 (317)
.
T Consensus 287 ~ 287 (290)
T TIGR00776 287 G 287 (290)
T ss_pred h
Confidence 3
No 27
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.40 E-value=1.6e-10 Score=105.26 Aligned_cols=208 Identities=17% Similarity=0.216 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 021119 32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTS 111 (317)
Q Consensus 32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~ 111 (317)
..+.+-+++-..+-.++-+|..+-..-.+++=...+|++..++.++++|||+++.||+|+.++.+||........
T Consensus 73 ~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g----- 147 (293)
T COG2962 73 LMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG----- 147 (293)
T ss_pred HHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 334555666778888888899999999999999999999999999999999999999999999999988765421
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchH
Q 021119 112 ALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA 191 (317)
Q Consensus 112 ~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~ 191 (317)
+.| +.. +.-++..++++.. ||.+|-..-.+.-.....+. +..+..+. ..+... ++....+..
T Consensus 148 --~lp--wva----l~la~sf~~Ygl~-RK~~~v~a~~g~~lE~l~l~----p~al~yl~---~l~~~~--~~~~~~~~~ 209 (293)
T COG2962 148 --SLP--WVA----LALALSFGLYGLL-RKKLKVDALTGLTLETLLLL----PVALIYLL---FLADSG--QFLQQNANS 209 (293)
T ss_pred --CCc--HHH----HHHHHHHHHHHHH-HHhcCCchHHhHHHHHHHHh----HHHHHHHH---HHhcCc--hhhhcCCch
Confidence 233 222 2234556777775 55556432222222222221 11111111 111111 111211222
Q ss_pred HHHHHHHHHH-HHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 192 TMLLICNNAA-QGILS---SFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 192 ~~~~il~~ai-~g~~v---~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
.+..+...+. .+.-. +..-|+.+=.+-++.+++.|..-.+++++++||+++..+.+..+.+-.|+.+|...
T Consensus 210 ~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 210 LWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2332222222 22111 12224444456678899999999999999999999999999999999999888764
No 28
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.7e-11 Score=110.20 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGT 110 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~ 110 (317)
|+-|.+.|.+-.....+..-++.|++-++-.+.+++|.+.+++-+.++=|+|+....+.+..+..+|+......+...
T Consensus 106 ~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~-- 183 (367)
T KOG1582|consen 106 WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT-- 183 (367)
T ss_pred hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc--
Confidence 556999999999999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--cccccccc
Q 021119 111 SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPS--SFDILQGH 188 (317)
Q Consensus 111 ~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~--~~~~~~~~ 188 (317)
..++ +..|..+.-++-++.|.-+-.+||.+|..+..+.. .-.+-+..|..+.+..+.+ .|+. ...+...+
T Consensus 184 -sPNF--~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~E-mvfySy~iG~vflf~~mvl----Tge~f~a~~fcaeh 255 (367)
T KOG1582|consen 184 -SPNF--NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSE-MVFYSYGIGFVFLFAPMVL----TGELFSAWTFCAEH 255 (367)
T ss_pred -CCCc--ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcce-EEEeeecccHHHHHHHHHh----cccchhhhHHHHhC
Confidence 1233 45687777777777788888899999986433321 1112233344443333322 2221 11122222
Q ss_pred chHHHHHHHHH---HHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 189 SKATMLLICNN---AAQG-ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 189 ~~~~~~~il~~---ai~g-~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
++.+....+.. +..| ..+-..+|..++.+.+..++.+.-++.++|+++|..|+|....-|..+|+.|+++-..
T Consensus 256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY 332 (367)
T ss_pred cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence 33233222222 2222 2233345666777777778888899999999999999999999999999999998555
No 29
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.30 E-value=3.2e-11 Score=110.09 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSAL 113 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~ 113 (317)
.+.-|+..+..-.+.+++++|++.+.|+|.++..++|+.+|+..|-=||.++.=..-+++..+|+.+...++.+
T Consensus 87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq------ 160 (349)
T KOG1443|consen 87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ------ 160 (349)
T ss_pred hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc------
Confidence 34557778899999999999999999999999999999999999988999998888888888999999877642
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---ccccccc
Q 021119 114 GLPVATGAYLYTLIFVTVPSLASVFNEYALKSQY--DTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS---FDILQGH 188 (317)
Q Consensus 114 ~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~--~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~---~~~~~~~ 188 (317)
.+..|..+++.+++++++...+.++++++++ ...+.....++.- .+....++....+||... ...+...
T Consensus 161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p---~M~~~Ll~~~l~fEG~~~~~~s~~f~~~ 234 (349)
T KOG1443|consen 161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQP---WMSIGLLPLSLLFEGLHLITSSSIFRFQ 234 (349)
T ss_pred ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhh---HHHHHHHHHHHHHcccccchhhhHHHhc
Confidence 2456899999999999999999999999762 1111111111110 111111223345777621 1122222
Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 189 SK-ATMLLICNNAAQGILSSFFFKY--------ADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 189 ~~-~~~~~il~~ai~g~~v~~~~k~--------~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
+. ..+-.+...+.+|.. ++.+-. .+.++-+.+.-..-+.+.+++..+.+++++..-++|..+.+.|+..|
T Consensus 235 d~~~~~rv~g~i~l~g~l-aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 235 DTGLILRVIGLISLGGLL-AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred CccHHHHHHHHHHHHHHH-HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 21 122233333444432 222211 23333344444566788899999999999999999999999999999
Q ss_pred cC
Q 021119 260 FS 261 (317)
Q Consensus 260 ~~ 261 (317)
..
T Consensus 314 ~~ 315 (349)
T KOG1443|consen 314 RN 315 (349)
T ss_pred cc
Confidence 43
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.28 E-value=2.6e-09 Score=95.39 Aligned_cols=230 Identities=15% Similarity=0.060 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCH
Q 021119 8 YRMVLFYLQMPVISFILLQAA--RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI 85 (317)
Q Consensus 8 ~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~ 85 (317)
+|...=+.++-.++|+-++++ +|+...+..+..-..-|.++|.+++.+|.+++..+-++.|+..++++ .||..-
T Consensus 46 lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d 121 (292)
T COG5006 46 LRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRD 121 (292)
T ss_pred HHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhh
Confidence 344333333444455555554 45666788888888999999999999999999999999999888654 566666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 021119 86 IQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIF 165 (317)
Q Consensus 86 ~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~ 165 (317)
.-|+++ .+.|+.+..-.+.. ..+.+..|..+.+.+..||+.|-+..+|.-+.+ +..--...-+ ..+.++
T Consensus 122 ~vwvaL--AvlGi~lL~p~~~~------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm-~vAavi 190 (292)
T COG5006 122 FVWVAL--AVLGIWLLLPLGQS------VWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGM-LVAALI 190 (292)
T ss_pred HHHHHH--HHHHHHhheeccCC------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHH-HHHHHH
Confidence 666555 55666555432221 123456799999999999999999999987543 2221111221 123333
Q ss_pred HHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 021119 166 NFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQGILSSF-----FFKYADTILKKYSSTVATIFTGLASAALFGHT 240 (317)
Q Consensus 166 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~g~~v~~-----~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~ 240 (317)
.+|. .....|+ .+. ++.....-+..++.++.+-| .+++...-.-....++.|.++.+.|++++||.
T Consensus 191 v~Pi---g~~~ag~----~l~--~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ 261 (292)
T COG5006 191 VLPI---GAAQAGP----ALF--SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGET 261 (292)
T ss_pred Hhhh---hhhhcch----hhc--ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 2321 1111111 111 22222222333444444444 33445555556666789999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcC
Q 021119 241 LTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 241 lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+|+.+++|+..|+.++.-...
T Consensus 262 ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 262 LTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred CCHHHHHHHHHHHHHHhcccc
Confidence 999999999999998775554
No 31
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.8e-13 Score=120.17 Aligned_cols=228 Identities=10% Similarity=0.127 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 021119 36 VPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGL 115 (317)
Q Consensus 36 ~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~ 115 (317)
..++.+.+.-....+.++|.+.+.|++=+++..+|+.++++.+||+|-+..-..++.+.+.|--+-. ..|+ ...
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv---dqE~---~~~ 180 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV---DQEG---STG 180 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc---cccc---ccC
Confidence 3345554444444558999999999999999999999999999999999887777766666643221 1221 123
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH
Q 021119 116 PVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL 195 (317)
Q Consensus 116 ~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 195 (317)
+.++.|.++++.+.++-|+-++|.||.+..- ++.+|..+++...++.++.+|.+.+..-++ +..++-+.+.++.|.+
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~--~v~~~~~l~a~~Fw~~ 257 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQ--AVVGFPHLPAIKFWIL 257 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHH--HHcCcccchHHHHHHH
Confidence 4567899999999999999999999876654 567888888888888888777665322111 1112223445667877
Q ss_pred HHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 021119 196 ICNNAAQGILSSFFF----KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPK 271 (317)
Q Consensus 196 il~~ai~g~~v~~~~----k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~ 271 (317)
+...+++|..+.++. |-.++++.++..+.+-..-+++++.+.+|..+..-|-|-.+|+.|..+|.+.+++++++++
T Consensus 258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 777888887777654 5567777777777777888888999999999999999999999999999987777666544
Q ss_pred C
Q 021119 272 N 272 (317)
Q Consensus 272 ~ 272 (317)
.
T Consensus 338 ~ 338 (347)
T KOG1442|consen 338 A 338 (347)
T ss_pred c
Confidence 3
No 32
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.1e-10 Score=105.72 Aligned_cols=230 Identities=13% Similarity=0.172 Sum_probs=156.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
++..+++..++++|.+.-.....+++|+|.+.+.+++...|+++++.-.+++|.|.++.-|.++....+|......++..
T Consensus 74 ~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s 153 (314)
T KOG1444|consen 74 LRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS 153 (314)
T ss_pred hHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce
Confidence 35567888899999999888899999999999999999999999999999999999999999999999999888765532
Q ss_pred CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-c-ccccc
Q 021119 108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGP-S-SFDIL 185 (317)
Q Consensus 108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~-~-~~~~~ 185 (317)
.+..|+.+++..++..+...++.||..+..+ .+-+ .+..+--+++++.+.+....-|+ . ...-+
T Consensus 154 ---------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~-l~~~----~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~ 219 (314)
T KOG1444|consen 154 ---------FNLRGYSWALANCLTTAAFVVYVKKSVDSAN-LNKF----GLVFYNNLLSLPPLLILSFITGELDALSLNF 219 (314)
T ss_pred ---------ecchhHHHHHHHHHHHHHHHHHHHHhhcccc-ccce----eEEeehhHHHHHHHHHHHHHhcchHHHHhhc
Confidence 1234899999999999999999999877541 1111 11223333444333322222222 1 00001
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 186 QGHS-KATMLLICNNAAQGILSSFF----FKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 186 ~~~~-~~~~~~il~~ai~g~~v~~~----~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
..+. ...+..+....+.|..+.|. .+..++.+-..........+.+.+.+.+|++.++.-++|..+-+.|-.+|+
T Consensus 220 ~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 220 DNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 1122 23444445455555544443 233344443444433445566677777789999999999999999999998
Q ss_pred CCCCcCCCCCC
Q 021119 261 SPLSKVKDEPK 271 (317)
Q Consensus 261 ~~~~~~~~~~~ 271 (317)
...+++|+.|+
T Consensus 300 ~~~~~~k~~~~ 310 (314)
T KOG1444|consen 300 YATFRKKKQPP 310 (314)
T ss_pred hhhhhhccCCC
Confidence 85555554433
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=4e-09 Score=84.55 Aligned_cols=76 Identities=28% Similarity=0.341 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 021119 30 NNVLLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSL 106 (317)
Q Consensus 30 ~~~~~~~~all~~-~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~ 106 (317)
++.+....+++.. .++.+.++|+++.| +...++.++.|+++++++++++|||+++++|.+++++++|++++..++.
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3445555577664 89999999999999 5888999999999999999999999999999999999999999987664
No 34
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.00 E-value=1.8e-08 Score=84.31 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc----ccc-cc--c
Q 021119 121 AYLYTLIFVTVPSLASVFNEYALKSQ----YDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD----ILQ-GH--S 189 (317)
Q Consensus 121 G~~l~l~a~~~sal~~V~~ekl~k~~----~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~----~~~-~~--~ 189 (317)
|..+++.++++.|+..++.|+.+|+. ...+......+....+.++.++..+ ..|+..... ... .. +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~---~~e~~~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF---LLEGPQLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHHHHhhhhhhcch
Confidence 56788999999999999999999983 2333333333445555555554433 234432110 111 00 2
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 190 KATMLLICNNAAQ----GILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 190 ~~~~~~il~~ai~----g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
...+..++..++. +.....++++.++++..+...++.++..+.|+++|||++|..+++|.++.+.|+++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 2233333333332 34445677899999999999999999999999999999999999999999999999975
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.80 E-value=1.2e-07 Score=82.13 Aligned_cols=212 Identities=12% Similarity=0.076 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh
Q 021119 38 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLPEGTSALGLPV 117 (317)
Q Consensus 38 all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~ 117 (317)
+++.+..|+++..+++.++++.++.+..++-.|+-++++..||.|+...+.++.++...|++++...+... ..
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~-------a~ 132 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH-------AD 132 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-------hh
Confidence 66778999999999999999999999999999999999999999999999999999999999997655311 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHHHH-HHHHHHHhhcCCccccccc--ccchHH
Q 021119 118 ATGAYLYTLIFVTVPSLASVFNEYALKSQY--DTSIYHQNLFLYGYGAIFNF-LGIVITAMFKGPSSFDILQ--GHSKAT 192 (317)
Q Consensus 118 ~~~G~~l~l~a~~~sal~~V~~ekl~k~~~--~~~~~~~~~~l~~~g~i~~~-~~l~~~~~~~g~~~~~~~~--~~~~~~ 192 (317)
.+.|+.+.+.++..+|++.|..|....+.+ +.+..+ ..+.++-.++.. +.+++ .+.|.++.+.+. .|....
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~Fm--S~LGF~NL~~~~~~~lIL--~~T~VE~~qsFA~~PWG~l~ 208 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFM--SCLGFFNLCFISFPALIL--AFTGVEHLQSFAAAPWGCLC 208 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHH--HHHHHHHHHHHhhhHHHH--HHhchHHHHHHhhCCchhhh
Confidence 467999999999999999999888765431 222221 122333333322 22221 233332211111 111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 193 MLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 193 ~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
-.+.++.+ ++..+-+-......+.-+.....++.-.+....++=+-..+..++.|.+++.+|-.+.-.
T Consensus 209 G~A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 209 GAAGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hHHHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 01111111 111111111112223333333344455666676666667888899999999999776655
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.80 E-value=9.4e-08 Score=84.14 Aligned_cols=231 Identities=12% Similarity=0.139 Sum_probs=151.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 021119 28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRSLP 107 (317)
Q Consensus 28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~~~ 107 (317)
.++.+++..++++-..--+-.--+++|++.+.+.+.+++.++.+|..-.+++|.|++.....+-++.++.-.+...++.+
T Consensus 65 ~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 65 LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 35666777788776666566667899999999999999999999999999999999999999998888877766655432
Q ss_pred CCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccccccc
Q 021119 108 EGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVI-TAMFKGPSSFDILQ 186 (317)
Q Consensus 108 ~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~-~~~~~g~~~~~~~~ 186 (317)
... .....--.|++++..-++.++..-...||..|-.+..+. ...+|.=++++|.++. +.++|+.+....-+
T Consensus 145 ~~~--~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~-----dtmfYnNllslPiL~~~s~~~edws~~n~an 217 (309)
T COG5070 145 ASA--FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDF-----DTMFYNNLLSLPILLSFSFLFEDWSPGNLAN 217 (309)
T ss_pred HHH--HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchh-----hHHHHhhhHHHHHHHHHHHHhccCCcchhhc
Confidence 111 000011248888888887777766667766553211111 1123455566665542 33566554433445
Q ss_pred ccchHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 187 GHSKATMLLICNNAAQGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 187 ~~~~~~~~~il~~ai~g~----~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
+.+.....+++..++... +.++..+-.++.+-....++...-..+.|.++|+|+.+...+....+=+.+-.+|...
T Consensus 218 nl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 218 NLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 555444223332322222 2334444445555555566666778899999999999999999998888887777764
Q ss_pred CCc
Q 021119 263 LSK 265 (317)
Q Consensus 263 ~~~ 265 (317)
+++
T Consensus 298 ks~ 300 (309)
T COG5070 298 KSK 300 (309)
T ss_pred HHH
Confidence 343
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.68 E-value=1.4e-07 Score=75.29 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119 29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 102 (317)
Q Consensus 29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~ 102 (317)
+++......+++ ....+.+.++++++++++..+++.++.|+++++++++++|||++++||.|+++.++|+.++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 51 RQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445567777777 47999999999999999999999999999999999999999999999999999999998764
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.63 E-value=4.6e-08 Score=78.91 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
.|.-..+.++...+.-.++|.|++.-+++...-+..++|++++++|+++||||++..+|+|+.+.++|++++..
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 34444555666779999999999999999999999999999999999999999999999999999999987753
No 39
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.59 E-value=6.5e-07 Score=71.70 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 39 FLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 39 ll~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
++|.+...+...+++.+|.+.+..+.++.++++++++++++|||++++||+|+.+.++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56888999999999999999999999999999999999999999999999999999999988753
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.58 E-value=2.2e-06 Score=80.37 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
++.+.+.+.+.|+.+.|++..+=+.....++.++++..+||||+++++|.|+.+.++|.+++...+
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 567888999999999999999999999999999999999999999999999999999998765443
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.52 E-value=2.3e-05 Score=71.91 Aligned_cols=217 Identities=13% Similarity=0.092 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHhhc
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWE----ALALLLIGISVNQL 103 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~l----al~l~~~Gv~iv~~ 103 (317)
+.++.-++-+++..+.+..+|.+++++..|...=++ ..+.+.++++..++++|--+..+++ |+++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 344455566778899999999999999888777666 7888899999999999988887776 88899999998887
Q ss_pred CCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 021119 104 RSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFD 183 (317)
Q Consensus 104 ~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~ 183 (317)
++..+..... .....-|+...+++.+....+.+..+. .+- +.+..-.-. ..|.++....+. ..... .
T Consensus 123 ~~~~~~~~~~-~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~----~~~~~~lPq-aiGm~i~a~i~~---~~~~~---~ 189 (269)
T PF06800_consen 123 QDKKSDKSSS-KSNMKKGILALLISTIGYWIYSVIPKA-FHV----SGWSAFLPQ-AIGMLIGAFIFN---LFSKK---P 189 (269)
T ss_pred cccccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHh-cCC----ChhHhHHHH-HHHHHHHHHHHh---hcccc---c
Confidence 7653321100 111224777888888888787777554 221 222111111 123332221111 11111 1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHHHHHHHHHHH
Q 021119 184 ILQGHSKATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTM----NFILGISIVFISMHQ 258 (317)
Q Consensus 184 ~~~~~~~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~----~~~lG~~lVi~gv~l 258 (317)
.++...+...+.=+.-++++...-.........+.-..+.+.++++++.|+++++|.=+. ..++|.++++.|..+
T Consensus 190 ~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 190 FFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 122222211111111123332221112222222222234468999999999999998664 457899988887543
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.38 E-value=5.3e-06 Score=66.09 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHH-----HHHHHHHHH
Q 021119 131 VPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLI-----CNNAAQGIL 205 (317)
Q Consensus 131 ~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~i-----l~~ai~g~~ 205 (317)
+||.++++.|+..|+. ++.. ...+....+.+ ..+... ..+... ....+...+... +..+++..+
T Consensus 2 ~~a~~~~~~k~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI--SPLS-ITFWRFLIAGI-LLILLL---ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhccC--CHHH-HHHHHHHHHHH-HHHHHH---hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence 5788999999998864 3333 33333334433 222211 111110 112222222222 222334444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 206 SSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 206 v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
..+.+++.+.........+.|+++.++++++++|++++.+++|..+++.|+.+.+
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888889999999999999999999999999999999988653
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.15 E-value=3.8e-05 Score=63.12 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=64.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 021119 34 LAVPAF-LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKI--IMKRRFSIIQWEALALLLIGISVNQLRSL 106 (317)
Q Consensus 34 ~~~~al-l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l--~L~erls~~q~lal~l~~~Gv~iv~~~~~ 106 (317)
+...++ +|.++..+..++++..|++.+.-+.+..+..+++.++. ++||+++.+||+|+++.++|+.++..++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 444555 68899999999999999999999999998888888885 89999999999999999999999976543
No 44
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.14 E-value=0.0002 Score=58.92 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Q 021119 121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 200 (317)
Q Consensus 121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~a 200 (317)
|+++++.+.++.+.+.+..|+=+++..+.+... . . ...+. .. . .+..+.+..+...+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~---~-~-~~~~~----~~----~----------~p~~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW---D-F-IAALL----AF----G----------LALRAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh---H-H-HHHHH----HH----h----------ccHHHHHHHHHHHH
Confidence 678888888888888888888776542211110 0 0 00000 00 0 00001222222222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHHHHhcCCCCc
Q 021119 201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAA--LFGHTLTMNFILGISIVFISMHQFFSPLSK 265 (317)
Q Consensus 201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~l--lfge~lt~~~~lG~~lVi~gv~ly~~~~~~ 265 (317)
+.-.+-.+.+++.+........+...++..+.++. +|||++|+.+++|.++|+.|+++.++..+|
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 22222334445555444444444455566666664 899999999999999999999998774443
No 45
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.12 E-value=2.3e-05 Score=63.45 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHH
Q 021119 122 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAA 201 (317)
Q Consensus 122 ~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai 201 (317)
..+.+++++++++..++.|--+++- +|-. .+.-=.....++..... ...|... .....+...|..+...++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v--dp~~-At~IRtiVi~~~l~~v~----~~~g~~~--~~~~~~~k~~lflilSGl 75 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV--DPDF-ATTIRTIVILIFLLIVL----LVTGNWQ--AGGEIGPKSWLFLILSGL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--CccH-HHHHHHHHHHHHHHHHH----HhcCcee--cccccCcceehhhhHHHH
Confidence 3678999999999999877666643 2221 11111111222211111 1223210 011123344444443433
Q ss_pred HHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 202 QGI----LSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 202 ~g~----~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
.+. +-...+|..++......+..+++++.++|++++||.+|..+++|..+|.+|+.+..
T Consensus 76 a~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 76 AGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 322 22223344444444556678999999999999999999999999999999977643
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.12 E-value=2.2e-05 Score=71.27 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 021119 29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS 99 (317)
Q Consensus 29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~ 99 (317)
+++......+++ ......+.++++++.++++.+++.++.|+++++++++++||+++..||.|+.+.+.|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 189 LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 344445666665 46889999999999999999999999999999999999999999999999999999873
No 47
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.03 E-value=8.1e-05 Score=62.07 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
+......+++....|...|..+++++|.+++++...|.+.+.++++++++|+++..|+.|+++.++|+..-
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 44456667788899999999999999999999999999999999999999999999999999999998753
No 48
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.03 E-value=0.00017 Score=58.39 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
+..+..+.-++|..+..+...+++++|.+.+..+. ....+.+++.+.+++||+++..|++++.+.++|++.+...+
T Consensus 29 ~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 29 GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34455666778999999999999999999888885 79999999999999999999999999999999998886644
No 49
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.01 E-value=8.5e-05 Score=69.25 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=63.2
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 35 AVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 35 ~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
...+++ ..++..++++++++.+++.++++..++|++.+++++++++|+++..|++|..+.++|++......
T Consensus 212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 344554 34788899999999999999999999999999999999999999999999999999998886554
No 50
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.00 E-value=0.00027 Score=65.40 Aligned_cols=129 Identities=9% Similarity=-0.031 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHH--
Q 021119 122 YLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNN-- 199 (317)
Q Consensus 122 ~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~-- 199 (317)
..+.+.+++++|...+..|+..+++ +.. + .+....+.++..+... ..... ..+...+...+..++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~~-~-~~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PDF-L-WWALLAHSVLLTPYGL----WYLAQ--VGWSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hHH-H-HHHHHHHHHHHHHHHH----Hhccc--CCCCCcchhhHHHHHHHHH
Confidence 4677899999999999999877653 221 1 2222223333222211 11100 00111111122222222
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 200 --AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 200 --ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+....+....+++.+........+..|+++.+++++++||+++..+++|.++++.|+.+-..
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 22233344456777777777777889999999999999999999999999999999887654
No 51
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.99 E-value=0.00027 Score=55.72 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHH
Q 021119 13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQW 88 (317)
Q Consensus 13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~ 88 (317)
.++.+=.......|.. ++.++..+..++|.++..+.-.+++++|.+++..+ .....+.+++.+++++||+++..|+
T Consensus 9 lAi~~EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~ 88 (106)
T COG2076 9 LAILLEVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHH
Confidence 3444444444444444 35666777778899999999999999999776555 5889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 021119 89 EALALLLIGISVNQL 103 (317)
Q Consensus 89 lal~l~~~Gv~iv~~ 103 (317)
+++.+.++|++....
T Consensus 89 ~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 89 LGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999988754
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.96 E-value=5.3e-05 Score=70.69 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+......++...+...+.++++++.+++..+++.++.|++.+++++++++|+++..||+|.++.+.|+.+....
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 33344444445578889999999999999999999999999999999999999999999999999999887653
No 53
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.95 E-value=0.00039 Score=55.02 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHH
Q 021119 13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW 88 (317)
Q Consensus 13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~ 88 (317)
.++.+=.......|.. +++++..+.-++|..+..+...+++.+|.+++..+. ....+.+++.+++++||++++.|+
T Consensus 8 ~Ai~~Ev~~t~~Lk~s~gf~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~ 87 (105)
T PRK11431 8 IAGLLEVVWAVGLKYTHGFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARL 87 (105)
T ss_pred HHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444444444444433 334455566778899999999999999998776666 599999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 021119 89 EALALLLIGISVNQL 103 (317)
Q Consensus 89 lal~l~~~Gv~iv~~ 103 (317)
+++.+.++|++.+..
T Consensus 88 ~gi~lIi~GVv~l~l 102 (105)
T PRK11431 88 LSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988754
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.95 E-value=0.00037 Score=55.65 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHH
Q 021119 15 LQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEA 90 (317)
Q Consensus 15 ~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~la 90 (317)
+.+=.......|.. ++.++....-++|.++..+...+++++|.+.+..+ .....+.+++.+++++||+++..|+++
T Consensus 11 ~~~Ev~~~~~lK~s~gf~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~g 90 (110)
T PRK09541 11 ILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIG 90 (110)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 33333433444443 33444455566788999999999999999988888 468999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 021119 91 LALLLIGISVNQLR 104 (317)
Q Consensus 91 l~l~~~Gv~iv~~~ 104 (317)
+.+.++|++.+...
T Consensus 91 i~lIi~GVi~l~l~ 104 (110)
T PRK09541 91 MMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998654
No 55
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.90 E-value=6.9e-05 Score=69.77 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 29 RNNVLLAVPAFL-YAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 29 ~~~~~~~~~all-~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+.+......+++ ..+...+.++++++.++++.+++..++|+++++++++++||+++..||+|.++.+.|+.+....
T Consensus 210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344455555665 4578889999999999999999999999999999999999999999999999999999888653
No 56
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.88 E-value=0.00058 Score=54.39 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 102 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~ 102 (317)
++++....-++|.++..+.-.+++++|.+++..+. ....+.+++.+.+++||++++.|++++.+.+.|++.+.
T Consensus 34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44555566678889999999999999998776665 68899999999999999999999999999999998764
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.86 E-value=0.00018 Score=68.91 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Q 021119 37 PAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQ 102 (317)
Q Consensus 37 ~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~ 102 (317)
-++.|.+.|.+.|++++++++.++++...++|+++.++++++++|+++..|++|.++.+.|+.+..
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999999999999999999999999999998764
No 58
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.73 E-value=0.00018 Score=67.09 Aligned_cols=67 Identities=6% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 38 AFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 38 all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
++...+...+.++++++.|++..+.+....|++..++++++++|+++..|+.|..+.++|+.++..+
T Consensus 220 g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 220 GIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999999999999999999999999999888877654
No 59
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.72 E-value=0.00027 Score=65.99 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 32 VLLAVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 32 ~~~~~~all~-~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
...+..+++- .+...+.+.+++++++++.+.+..+.|++.+++++++++|+++..||+|.++.++|+.+...+.
T Consensus 215 ~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 215 LSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3344445443 4677888899999999999999999999999999999999999999999999999998876543
No 60
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.71 E-value=0.00018 Score=69.15 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 43 INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 43 ~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
+...+.++++++.+++..++...+.|++++++++++|+|+++..|++|.++.+.|+.++..+.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 466778889999999999999999999999999999999999999999999999999987654
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00025 Score=65.93 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
.+.+...+.|.|+.+.|++...-+.+++.++.++++..+||||++..-.+|+++.++|-.++....
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 456888999999999999999999999999999999999999999999999999999987766543
No 62
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.64 E-value=0.00011 Score=68.50 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 40 LYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 40 l~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
++...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|.++.+.|+.+.....
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 455667788899999999999999999999999999999999999999999999999999887543
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.60 E-value=0.00094 Score=54.13 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119 221 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263 (317)
Q Consensus 221 ~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 263 (317)
.+.+..+.+++.|+++|||++|+.+++|..+++.|+..-+...
T Consensus 63 w~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 63 WEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3457888999999999999999999999999999998877644
No 64
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00078 Score=60.82 Aligned_cols=90 Identities=22% Similarity=0.200 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCH
Q 021119 10 MVLFYLQMPVISFILLQAARNNV---LLAVPAFLY-AINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI 85 (317)
Q Consensus 10 ~~~~~~~~p~~~~~~~~~~~~~~---~~~~~all~-~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~ 85 (317)
.++..+++|+....---...++. .-...+++. .+=..+-.++++++|..+|.++.++.|.+-++-.+++|+|++|.
T Consensus 185 ~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~ 264 (292)
T COG5006 185 LVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTL 264 (292)
T ss_pred HHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCH
Confidence 46788899988742222211111 112223443 36677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 021119 86 IQWEALALLLIGIS 99 (317)
Q Consensus 86 ~q~lal~l~~~Gv~ 99 (317)
.||+++...+.+.+
T Consensus 265 ~qwlaI~~ViaAsa 278 (292)
T COG5006 265 IQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887765
No 65
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.53 E-value=0.00076 Score=62.93 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhc
Q 021119 30 NNVLLAVPAFLYAINNYLKFIMQL-YFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQL 103 (317)
Q Consensus 30 ~~~~~~~~all~~~~n~l~f~al~-~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~----lal~l~~~Gv~iv~~ 103 (317)
+.++..+.+++..+.+.+++.+.+ +.+++++.++.+..|+..++++.+++||+.+++|+ +|.++.+.|+.++..
T Consensus 210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 444455577787889999999999 99999999999999999999999999999999999 999999999988753
No 66
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.46 E-value=0.0057 Score=55.59 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-cccccccchH-HHHHHHH
Q 021119 121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSS-FDILQGHSKA-TMLLICN 198 (317)
Q Consensus 121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~-~~~~~~~~~~-~~~~il~ 198 (317)
|..++++++++|+...+..|. ..+ .++.....+=.+++.++..+.+. ....... ....+..+.. .+..+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~~---~~~~~i~~~R~~~a~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LKP---LPATDILGHRMIWSFPFMLLSVT---LFRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hcc---CCHHHHHHHHHHHHHHHHHHHHH---HHcchHHHHHHHhCcccchHHHHHHH
Confidence 678899999999999999887 332 23332222223344333222111 1111000 0001111111 1111111
Q ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 199 ----NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 199 ----~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
.+....+..+..++.+........++.|+++.++++++++|+++..+++|.++.+.|+.+-
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2222333444567777777777788899999999999999999999999999999997654
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.43 E-value=0.0016 Score=50.25 Aligned_cols=82 Identities=13% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHH
Q 021119 13 FYLQMPVISFILLQAA---RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQW 88 (317)
Q Consensus 13 ~~~~~p~~~~~~~~~~---~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~ 88 (317)
..+.+-.......|.. ++..+....-.+|..+..+...+++++|.+.+.-+ .....+.+++.+.+++||+++..||
T Consensus 8 ~a~~~ev~~~~~lK~s~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~ 87 (93)
T PF00893_consen 8 LAILFEVVGTIALKASHGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKW 87 (93)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444444444444433 33444444445788999999999999999888665 5699999999999999999999999
Q ss_pred HHHHHH
Q 021119 89 EALALL 94 (317)
Q Consensus 89 lal~l~ 94 (317)
.++.+.
T Consensus 88 ~gi~lI 93 (93)
T PF00893_consen 88 LGIGLI 93 (93)
T ss_dssp HHHHHH
T ss_pred hheeeC
Confidence 998763
No 68
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.34 E-value=0.002 Score=51.54 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 204 ~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
.+....+|+.+........++.++++.++|+++|||++|+.+++|.++++.|+.+-.
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334555666554444444558999999999999999999999999999999987643
No 69
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.25 E-value=0.0024 Score=58.09 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 29 RNNVLLAVPAFLYA-INNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 29 ~~~~~~~~~all~~-~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+++......+++.. ....+.+++++..+++..+.+..+.|++..++++++++|+++.+|++|.++.+.|+.+...+
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 44556666677666 68999999999999999999999999999999999999999999999999999999988654
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.16 E-value=0.25 Score=47.27 Aligned_cols=116 Identities=10% Similarity=0.000 Sum_probs=78.5
Q ss_pred HHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCC-------CCHHH
Q 021119 21 SFILLQAARN-----NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRR-------FSIIQ 87 (317)
Q Consensus 21 ~~~~~~~~~~-----~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~er-------ls~~q 87 (317)
.+.+..+-++ +..-.+-+++-.+.|..++.+++++-.|...-+. .+..+..+++..++++|= -...-
T Consensus 58 ~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~ 137 (345)
T PRK13499 58 LPDFWAYYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMT 137 (345)
T ss_pred hhhHHHHHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHH
Confidence 3455555542 2233444667789999999999999988776665 788899999998888753 23456
Q ss_pred HHHHHHHHHHHHHhhc----CCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 021119 88 WEALALLLIGISVNQL----RSLPEGTSALGLPVATGAYLYTLIFVTVPSLAS 136 (317)
Q Consensus 88 ~lal~l~~~Gv~iv~~----~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~ 136 (317)
.+|+++.++|+++... ++..+++...+.....-|+...+++.+.+++++
T Consensus 138 ~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 138 LLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 7788888999999987 332111000011112348888888888888888
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.15 E-value=0.0068 Score=48.39 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 221 SSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 221 ~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
.+.+..+.+++.|+++|||++|+.+++|+.+++.|+.+-+..
T Consensus 63 w~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 63 WSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345688889999999999999999999999999999988764
No 72
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.15 E-value=0.02 Score=53.63 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHH-HHHHHHHHHHHHHHHHH
Q 021119 134 LASVFNEYALKSQYDT--SIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATM-LLICNNAAQGILSSFFF 210 (317)
Q Consensus 134 l~~V~~ekl~k~~~~~--~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~il~~ai~g~~v~~~~ 210 (317)
..++++|++.++.... +..+.-.| .++..+++.+... ..+... ....+...+ ...+...+...+....+
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q-~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQ-FAFNALFSFILLS---LFKFPK----SRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHH-HHHHHHHHHHHHH---hccccC----CCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999886333 33333233 2333343333221 111010 011111122 12223333334445567
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 211 KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 211 k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
+|.+--......+.+++.+++.+++++|++.+..++++.+++.+|+.++...
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence 7777667777778899999999999999999999999999999999998874
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.01 E-value=0.0018 Score=51.87 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
+++|.+|=+++......+|+.+...|.|.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.++|+.+.
T Consensus 41 n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 41 NPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 467888999999999999999999999998888 48999999999988888888999999999999998754
No 74
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.84 E-value=0.014 Score=46.42 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 204 ILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 204 ~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
....+..++.++ .......+.|+++.+++.++|+|+++...++|.+++++|+.+-..
T Consensus 50 ~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 50 LLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 334455677764 444666689999999999999999999999999999999887665
No 75
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.83 E-value=0.013 Score=55.11 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHH
Q 021119 119 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICN 198 (317)
Q Consensus 119 ~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~ 198 (317)
..|..+.+.++++.+.+.+++||-.++....+.... . + . .+.+. ++.+|.-++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----~-~-----------------~~~l~--~~~W~~G~~~ 59 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----G-G-----------------RSYLR--RPLWWIGLLL 59 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----h-h-----------------hHHHh--hHHHHHHHHH
Confidence 569999999999999999999987665421111000 0 0 0 00000 1112222222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 199 NAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 199 ~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
.+++.......+.++..........++.+++.+++..+++|+++...++|..+++.|..+...
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 333333333344566666677777789999999999999999999999999999999765443
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.08 Score=41.81 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=44.2
Q ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 205 LSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 205 ~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+.+..+|+.+ .+.-+.-+.+.++.+.+.|+++|||+++...++|..+++.|+..-+.
T Consensus 46 ~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 46 LLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3455556543 22234445678899999999999999999999999999999987765
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.63 E-value=0.15 Score=40.61 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 206 SSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 206 v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
.+..+|+.+ ++.-+..+.+..+.+++.|+++|||++|+.+++|.++++.|+..-+
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 344445432 2222334557778999999999999999999999999999988754
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.49 E-value=0.037 Score=43.75 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 219 KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 219 ~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
+..+.+..+.+++.|+++|||++|+.+++|..+++.|+..-+.
T Consensus 60 AvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 60 AVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3345578889999999999999999999999999999987654
No 79
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.44 E-value=0.018 Score=52.63 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH-HcCCc-----chHHHHHHHHHHHHHHHHhcCCCCcC
Q 021119 201 AQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAA-LFGHT-----LTMNFILGISIVFISMHQFFSPLSKV 266 (317)
Q Consensus 201 i~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~l-lfge~-----lt~~~~lG~~lVi~gv~ly~~~~~~~ 266 (317)
.++.+.-.++|... ++-.....+...+.++..|-+ +||++ -.+.-.+|++++++|..+|..-+++.
T Consensus 67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34444334444322 222233344556666666644 67654 23455899999999988887644444
No 80
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.23 E-value=0.23 Score=47.41 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
.++.+....++|.+-.........+++++.++|++++++..++.+++|.++.++|+.+...
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 4555555667777766667777889999999999999999999999999999999887655
No 81
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.92 E-value=0.068 Score=48.68 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Q 021119 201 AQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEP 270 (317)
Q Consensus 201 i~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~ 270 (317)
+.+......+++.|+.+-.+....++++++++++++++.+++..+|++..+...|+.+........++.+
T Consensus 29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~ 98 (244)
T PF04142_consen 29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNS 98 (244)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccc
Confidence 4455556677889988888888899999999999999999999999999999999998877555554443
No 82
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.81 E-value=0.27 Score=47.07 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHhhcCCcccccccccchHHHHHH-
Q 021119 119 TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGI-VITAMFKGPSSFDILQGHSKATMLLI- 196 (317)
Q Consensus 119 ~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~i- 196 (317)
..|+.+.+++++|++-..+-.|| .|+.+=+.. |. ..++...+... .......+. -.+.++..+...+...
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~-----W~-v~gi~~wl~~~~~~g~~~~~~-f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSWETM-----WS-VGGIFSWLILPWLIAALLLPD-FWAYYSSFSGSTLLPVF 77 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCchhHH-----HH-HHHHHHHHHHHHHHHHHHhhh-HHHHHHhcCHHHHHHHH
Confidence 46899999999999887887777 565421222 32 22322111111 111111111 0122333343333221
Q ss_pred ---HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcc---h----HHHHHHHHHHHHHHHHhcCC
Q 021119 197 ---CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTL---T----MNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 197 ---l~~ai~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~l---t----~~~~lG~~lVi~gv~ly~~~ 262 (317)
+.-+++++.....+|+.. +..-.....++.+++++.+.+++||-. + ...++|.+++++|+.+....
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 122455555555666643 445566677888999999999998643 2 34689999999999887764
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.78 E-value=0.004 Score=58.69 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
..+...++++.+.|...|..+.+++|-++++....|-+++...++++++++++..|..|..+.++|+..-..
T Consensus 236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 345555688999999999999999999999999999999999999999999999999999999999988754
No 84
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.70 E-value=0.015 Score=51.78 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGIS 99 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~ 99 (317)
...+.++.++...+..+.++|.++.+..+...++++++++++.++++++++..||.|+.+.+.|+.
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 444556677888889999999999999999999999999999999999999999999999998864
No 85
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.05 Score=48.91 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
.-++-+...|++.++...+.|....+..|-+-+++..+.-+||.+.|.++++..++.+||+|-++.+.|...=..
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 345668888999999999999999999999999999999999999999999999999999999999988765443
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.99 E-value=1.7 Score=35.91 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHH
Q 021119 123 LYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNAAQ 202 (317)
Q Consensus 123 ~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~ai~ 202 (317)
++.+.+.++.++++.++-++.|+. .+++..+..-...|.+....... ..++. ......+.+++.|. .++.
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~--gs~~~as~i~~~~G~i~~~i~~~---~~~~~-~~~~~~~~p~w~~l----GG~l 73 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKAL--GSPLVASFISFGVGFILLLIILL---ITGRP-SLASLSSVPWWAYL----GGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHH---Hhccc-ccchhccCChHHhc----cHHH
Confidence 556677777888999999987764 34555555545566665444332 22322 11122333443332 2222
Q ss_pred HHH----HHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHHHH
Q 021119 203 GIL----SSFFFKYADTILK-KYSSTVATIFTGLASAA-LF---GHTLTMNFILGISIVFISMHQ 258 (317)
Q Consensus 203 g~~----v~~~~k~~~ai~~-~~~~~l~~v~t~l~s~l-lf---ge~lt~~~~lG~~lVi~gv~l 258 (317)
|.. ..+.......... .....-+.+.+.++..+ +| .+++++..++|.++++.|+++
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 221 2222222222111 11122244555566654 33 468999999999999999864
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.78 E-value=0.16 Score=39.13 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 021119 206 SSFFFKYADTIL-KKYSSTVATIFTGLASAALFGHTLTMNFILGISIV 252 (317)
Q Consensus 206 v~~~~k~~~ai~-~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV 252 (317)
.+..+|+.+-.+ -+..+.+..+.+.+.|+++|||++|..+++|..+|
T Consensus 46 l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 46 LSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344455543222 23345578889999999999999999999999876
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.56 E-value=0.083 Score=42.29 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 207 SFFFKYAD-TILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 207 ~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
.+.+...| +.....+++++-+++.+.++++.+|..+...++|+++|+.|+.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 33444444 445566678899999999999988888999999999999998653
No 89
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.05 E-value=0.085 Score=49.07 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=67.2
Q ss_pred HHHhhhhhHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 24 LLQAARNNVL-LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 24 ~~~~~~~~~~-~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
|..+-+|.++ +++.+.+.+......|+-++..-+-++.++.-+.=+++.++|.+..+++++..||.++.+.+.|+..=
T Consensus 233 F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 233 FIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred HHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 3444444444 78889999999999999999999999999999999999999999999999999999998888887543
No 90
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.00 E-value=0.4 Score=44.43 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+.+..+...|...++--.++-.|-+++|.++..++.+..|...-+++.++.||+++.-|+.+-++.-+|+++...+
T Consensus 209 ~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 209 SLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677788888888999999999999999999999999999999999999999999999999888654
No 91
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=93.54 E-value=0.19 Score=46.34 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 92 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~ 92 (317)
|..++=.+.++++...|.+++++.+..-.++.-.++|+.++..++-+.++|||+=+++++..+.
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 4456678889999999999999999999999999999999999999999999999988875443
No 92
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=92.65 E-value=0.3 Score=38.41 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=62.2
Q ss_pred HHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 021119 21 SFILLQAARN---NVLLAVPAFLYAINNYLKFIMQLYFNPATVK-MLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLI 96 (317)
Q Consensus 21 ~~~~~~~~~~---~~~~~~~all~~~~n~l~f~al~~l~~s~~~-ll~~~~pi~talls~l~L~erls~~q~lal~l~~~ 96 (317)
++.+.|++|+ +|.|.+|=+++-....++|.-+++.|.+.+. +-+++...||+++...+--|...++..++..+.++
T Consensus 39 ~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~ 118 (125)
T KOG4831|consen 39 IMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVF 118 (125)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhh
Confidence 3456677766 4679999999999999999999999987665 44577889999999877555555666777778777
Q ss_pred HHHHh
Q 021119 97 GISVN 101 (317)
Q Consensus 97 Gv~iv 101 (317)
|+.+.
T Consensus 119 Gi~Lc 123 (125)
T KOG4831|consen 119 GIWLC 123 (125)
T ss_pred hhhhe
Confidence 76543
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.33 E-value=12 Score=31.49 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Q 021119 121 AYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLLICNNA 200 (317)
Q Consensus 121 G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~il~~a 200 (317)
..+..+.+.++..+++-.+-++.|.. + ++..-...-+..|++..+...+ ..++........+.+++.|.- ..
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-spl~As~isf~vGt~~L~~l~l---~~~~~~~~a~~~~~pwW~~~G---G~ 77 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYL-G-SPLLASLISFLVGTVLLLILLL---IKQGHPGLAAVASAPWWAWIG---GL 77 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHH---HhcCCCchhhccCCchHHHHc---cc
Confidence 44666777788888999999887654 2 3333333223344443222211 233332111223334444421 11
Q ss_pred HHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHHHHhcC
Q 021119 201 AQGILSSFFF----KYADTILKKYSSTVATIFTGLASAA-LFG---HTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 201 i~g~~v~~~~----k~~~ai~~~~~~~l~~v~t~l~s~l-lfg---e~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
++.+.+.--. |...+.+......-+.+.+.++.-+ +|| .++++..++|.+++++|+++...
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 1222221111 1121222222222344445555544 333 57999999999999999777655
No 94
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.15 Score=47.81 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 190 KATMLLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 190 ~~~~~~il~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
+..|.-++..++|-..-...+-++.+.+.....+++++++.+++..+++|.+++.-.+|..+.+.|.++-.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 34556667777777766556667888888888889999999999999999999999999999999965433
No 95
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=89.17 E-value=3.3 Score=32.62 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhh--hhHHHHHH----HHH-HHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHH
Q 021119 16 QMPVISFILLQAAR--NNVLLAVP----AFL-YAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQ 87 (317)
Q Consensus 16 ~~p~~~~~~~~~~~--~~~~~~~~----all-~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q 87 (317)
.|-+++..=.|.+. +++...+. |+. |+.+--..=+|.+..+++.-.++. ......-++++.+++||++++.+
T Consensus 13 FMTfAWYGHLK~~~~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~ 92 (108)
T PF04342_consen 13 FMTFAWYGHLKFKSSKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY 92 (108)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH
Confidence 45566554444433 33333332 232 455444445566666666666655 34445567799999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021119 88 WEALALLLIGISV 100 (317)
Q Consensus 88 ~lal~l~~~Gv~i 100 (317)
..|-++...++..
T Consensus 93 l~af~~i~~av~f 105 (108)
T PF04342_consen 93 LWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHHhhhe
Confidence 9998888766543
No 96
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=87.83 E-value=0.043 Score=49.64 Aligned_cols=204 Identities=15% Similarity=0.109 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHHhhcCCCCCCCCC
Q 021119 38 AFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIMKRRFSIIQW----EALALLLIGISVNQLRSLPEGTSA 112 (317)
Q Consensus 38 all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L~erls~~q~----lal~l~~~Gv~iv~~~~~~~~~~~ 112 (317)
+++.......+|-+.+++..|.+.=++ .++.+-+.+++.+.++|=-+..|. +|+++.++|+.+-..++..+..
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~-- 143 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE-- 143 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc--
Confidence 556678999999999999888877665 677888899999999998887664 5777888888777665531111
Q ss_pred CCCChh-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchH
Q 021119 113 LGLPVA-TGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLYGYGAIFNFLGIVITAMFKGPSSFDILQGHSKA 191 (317)
Q Consensus 113 ~~~~~~-~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~ 191 (317)
.+.+.+ --|....+.+.+..-.+.|..+...-+. -..+.-|.+-| ++....+- ..+.+ . ..+..
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g-~saiLPqAiGM-----v~~ali~~---~~~~~---~---~~~K~ 208 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDG-LSAILPQAIGM-----VIGALILG---FFKME---K---RFNKY 208 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeeccccccc-hhhhhHHHHHH-----HHHHHHHh---hcccc---c---chHHH
Confidence 011111 1244444445544444444444322111 11122222222 22221111 11111 0 11223
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHHHH
Q 021119 192 TMLLIC---NNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMN----FILGISIVFISMHQ 258 (317)
Q Consensus 192 ~~~~il---~~ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~----~~lG~~lVi~gv~l 258 (317)
+|.-++ .-++++...-+.-+.....+.-..+.+..+++++-|+++++|+=|.. .++|..+++.|..+
T Consensus 209 t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 209 TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 333322 22344432222111111000001123567899999999999987664 47888888887544
No 97
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=87.42 E-value=8.7 Score=36.63 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHH--HHHHHHHHHHHHHHHhhcCCcccccccccchHHHHH
Q 021119 118 ATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSIYHQNLFLY--GYGAIFNFLGIVITAMFKGPSSFDILQGHSKATMLL 195 (317)
Q Consensus 118 ~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~~~~~~~l~--~~g~i~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 195 (317)
...|+++..+++++++...+-.||+ |+-. | ++.|+. +++.++ .|.+. +...-+.-.+.+...+..++..
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----W-Es~Wlv~gi~swli-~P~~~--a~l~ip~~~~i~~~~~~~~l~~ 75 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-KGWS----W-ESYWLVQGIFSWLI-VPWLW--ALLAIPDFFSIYSATPASTLFW 75 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-CCcc----H-HHHHHHHHHHHHHH-HHHHH--HHHhCCcHHHHHHhCChhHHHH
Confidence 3568899999999999888888875 5431 2 333321 222221 12111 1111111112233333222222
Q ss_pred H----HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHHHHhcCC
Q 021119 196 I----CNNAAQGILSSFFFKYAD-TILKKYSSTVATIFTGLASAALFG-------HTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 196 i----l~~ai~g~~v~~~~k~~~-ai~~~~~~~l~~v~t~l~s~llfg-------e~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
. +.-++++..-+..+||.. +.-.+.+.-+..++.+++.-++.| .+-....++|.++.++|+.+..+.
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 1 223567766677778754 444455555566677666555533 223346799999999999887765
No 98
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=85.49 E-value=5.7 Score=32.83 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHH-HHH----HhcCCCCHHHHHHHHHHHHHHHH
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALL-LKI----IMKRRFSIIQWEALALLLIGISV 100 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~tall-s~l----~L~erls~~q~lal~l~~~Gv~i 100 (317)
.||+...+++....-.+..+....+.++...++.-+.-+..+++ -.+ .-|++++++|.+++.+.++|+.+
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45566688888888888888999999988887775555555544 333 46799999999999999999863
No 99
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=84.30 E-value=2.5 Score=40.65 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCc
Q 021119 211 KYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDEPKNI 273 (317)
Q Consensus 211 k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~~ 273 (317)
++.+.....+.++.+-+|+..++.++-+|.+|+..+++..+-+.|+.+.+...+|++++...+
T Consensus 181 a~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~ 243 (416)
T KOG2765|consen 181 AFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS 243 (416)
T ss_pred hhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence 333333344455667789999999999999999999999999999999998777776654443
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=83.57 E-value=0.27 Score=44.59 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 021119 29 RNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALA 92 (317)
Q Consensus 29 ~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~ 92 (317)
|..++-.+|++.....|..++++.+..-.++.--++|+..+...+=..++||||=++++|..+.
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~ 270 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVI 270 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhh
Confidence 5567788999999999999999999999999999999999999999999999999999986553
No 101
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=83.48 E-value=2.3 Score=33.48 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 222 STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 222 ~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
..++..+=+.++++.++|++++.++.|+++++++++..
T Consensus 69 EvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 69 EVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33444444566778899999999999999999998753
No 102
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=81.65 E-value=0.54 Score=43.25 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 021119 28 ARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGI 98 (317)
Q Consensus 28 ~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv 98 (317)
+|||+.+...++..++...+.-.|+|.=-++-.++..++..++..++-.+++|+-.+++.|.|.++.+...
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~ 320 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSST 320 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhH
Confidence 38899999999999999999999999999999999999999999999999999999999997766554433
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=79.94 E-value=5.7 Score=35.78 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=68.8
Q ss_pred HHHHHH--HHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcC
Q 021119 15 LQMPVI--SFILLQAARN-----------NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKR 81 (317)
Q Consensus 15 ~~~p~~--~~~~~~~~~~-----------~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~e 81 (317)
+-.|++ ...+..+|.+ ..++++.+++-..-.++.-|..+-++..+++++.+++-...++-..+++++
T Consensus 195 lslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffda 274 (309)
T COG5070 195 LSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDA 274 (309)
T ss_pred HHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCC
Confidence 345655 4466677622 125677788888888888889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 021119 82 RFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 82 rls~~q~lal~l~~~Gv~iv 101 (317)
..+.....++++++..-++-
T Consensus 275 p~nf~si~sillGflsg~iY 294 (309)
T COG5070 275 PVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 99999999998888554443
No 104
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.97 E-value=11 Score=29.43 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 224 VATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 224 l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
++..+=..+|++.++|++.|.++.|++++.+|++...+
T Consensus 78 ItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 78 ITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 33444456888899999999999999999999886543
No 105
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.61 E-value=32 Score=26.86 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhh-hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 42 AINNYLKFIMQLYFNPATVKMLSN-LKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 42 ~~~n~l~f~al~~l~~s~~~ll~~-~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
.++--..=+|-+-.+++.-..+.- .....-+.||.+.|||.+++.++.|-.+...|+..+
T Consensus 53 ~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 53 LLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 333333334555455544444332 222334568999999999999999998888777655
No 106
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=75.70 E-value=77 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhc
Q 021119 200 AAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 200 ai~g~~v~~~~k~~~ai~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~ 260 (317)
++.+-.......+.|+.+-.+...+.+..+.+++++++++.++..+|...++...|+.+..
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3444444555677888888888889999999999999999999999999999999988776
No 107
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=74.28 E-value=79 Score=31.17 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.2
Q ss_pred cCCCccccccccccccCCCCC
Q 021119 294 MAAGANEDASHRAVNEEKAPL 314 (317)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~ 314 (317)
-+.|+.||++|+--|.|..|.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~ 474 (476)
T PLN00028 454 YASEWTEEEKEKGLHQGSLKF 474 (476)
T ss_pred hhcccchhhhhcccccccccc
Confidence 356899999999989888774
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=71.42 E-value=18 Score=33.81 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcC
Q 021119 223 TVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFS 261 (317)
Q Consensus 223 ~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~ 261 (317)
...++|+.++|..+++.+++..+|+|+..|+.|+...-.
T Consensus 120 GaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 120 GAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred cchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 346789999999999999999999999999999875443
No 109
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=22 Score=33.48 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
..+.+-+++.++-++..++..+..++.++++....+...+.+-..++.+++.++....|+.++++|-++-+..
T Consensus 229 ~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 229 VVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 3456667788899999999999999999999998888888888888888999999999999988887666543
No 110
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.33 E-value=44 Score=28.13 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHh-hhHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhhc
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLS-NLKVFVIALLLKIIM----KRRFSIIQWEALALLLIGISVNQL 103 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~-~~~pi~talls~l~L----~erls~~q~lal~l~~~Gv~iv~~ 103 (317)
.||..+.+++...+-...-.....+-+++...+. ..+.+.-.++=.+=+ ++++++.+++++++.++|+.++..
T Consensus 69 pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 69 PWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred chHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5666677776665555555566666665555554 445444444433333 499999999999999999666643
No 111
>PRK02237 hypothetical protein; Provisional
Probab=61.07 E-value=82 Score=25.00 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHhc-CCHHH-HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 31 NVLLAVPAFLYA-INNYLKFIMQLY-FNPAT-VKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 31 ~~~~~~~all~~-~~n~l~f~al~~-l~~s~-~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
..++.+|+..-. ++-.+. .++- .+.+. +..-...-++...+..+.+-|+|.+++.|++..+.++|+.++...
T Consensus 32 s~~~~~pg~~~L~lfg~ll--Tl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 32 SAWWLLPGALSLALFGWLL--TLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred chhHHHHHHHHHHHHHHHH--hcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 345677766543 222221 1221 22333 334445556666688999999999999999999999999888653
No 112
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=58.86 E-value=52 Score=26.02 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 60 VKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 60 ~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
+..-...-++...+..+.+=|+|.+++.+++..+.++|+.++...
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 444456667777888999999999999999999999999988654
No 113
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=58.84 E-value=4.6 Score=30.28 Aligned_cols=48 Identities=8% Similarity=0.084 Sum_probs=18.3
Q ss_pred HHHhcCCCCcCCCCCCCcCccccCCCCCCCcCCccccccCCCccccc----ccccccc
Q 021119 256 MHQFFSPLSKVKDEPKNISLESVDSPKNKRSKDTSFIGMAAGANEDA----SHRAVNE 309 (317)
Q Consensus 256 v~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 309 (317)
+..|-.+.+.+|+++-+..++-+ ..+.||| -|-++||+||+ -|++||+
T Consensus 24 ~iv~ieYrk~~rqrkId~li~RI-----reraEDS-GnES~Gd~EeeL~~Lv~~~G~~ 75 (81)
T PF00558_consen 24 TIVYIEYRKIKRQRKIDRLIERI-----RERAEDS-GNESDGDEEEELSALVESMGFD 75 (81)
T ss_dssp HHH------------CHHHHHHH-----HCTTTCC-HCTTTTCCHH-CHCCHH-GCCS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-----HcccccC-CCCCCCcHHHHHHHHHHHcCCC
Confidence 34555555555555433333333 2233333 57889999993 4455654
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=58.64 E-value=11 Score=29.81 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 217 LKKYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 217 ~~~~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
...+.++++..|+.+.|..+-.|......++|..+++.|+++.
T Consensus 81 avpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 81 AVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred eeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3355677888999999999877777788899999999998865
No 115
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=58.43 E-value=2.6e+02 Score=29.91 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 57 PATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 57 ~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
.+.+.++..+.|+-+|.++...+.+|.+..-+.+.+-.++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 356677888999999999999888876555577777777777654
No 116
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=58.13 E-value=2e+02 Score=28.54 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021119 72 ALLLKIIMKRRFSIIQWEALALLL--IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ 146 (317)
Q Consensus 72 alls~l~L~erls~~q~lal~l~~--~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~ 146 (317)
-.+.=.+-|.|+.+.|++=+.++. .=+.++..+.+ .+ .+..+.+.++.|-++-+.|...++|+.
T Consensus 312 fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh------i~-----F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 312 FFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH------IG-----FNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh------hc-----hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444557889999986444433 22333433221 11 345677778888899999999999875
No 117
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=56.12 E-value=39 Score=31.91 Aligned_cols=68 Identities=24% Similarity=0.420 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 021119 34 LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVN 101 (317)
Q Consensus 34 ~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv 101 (317)
+..++++-+.--..-|.-+..++.-+.++..-.|-+-|.+++..+++++++..-|+++.+...|+..-
T Consensus 246 i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 246 ISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34444444444555566667789999999999999999999999999999999999999999999887
No 118
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=55.99 E-value=80 Score=30.71 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=50.0
Q ss_pred HHHHHHHHH--HHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH
Q 021119 12 LFYLQMPVI--SFILLQAARNNVL-LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQW 88 (317)
Q Consensus 12 ~~~~~~p~~--~~~~~~~~~~~~~-~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~ 88 (317)
.+.|..|.. +....|.||+-.. ....+.+|.+-.. .++.-.++++..+..+|+++-+..++-||+.|.|.
T Consensus 359 Sla~a~l~~~YL~avl~~~~~g~~f~~~L~~lygvm~g-------lL~~edyALL~Gs~llf~~LaavM~lTRklDwy~~ 431 (443)
T COG4452 359 SLAGALLNGIYLQAVLRGWRNGLLFFLALLLLYGVMFG-------LLNSEDYALLLGSLLLFVALAAVMFLTRKLDWYQV 431 (443)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HhhhhHHHHHHhhHHHHHHHHHHHheeeecchhhc
Confidence 456666655 4566666666544 3333445543222 26788999999999999999999999999999886
No 119
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=55.50 E-value=1.1e+02 Score=31.06 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Q 021119 134 LASVFNEYALKSQYDTSIYHQNLFLYGYGAIF 165 (317)
Q Consensus 134 l~~V~~ekl~k~~~~~~~~~~~~~l~~~g~i~ 165 (317)
.-++|.+|..|+ .-|+...|+ +.|+.+
T Consensus 59 VDs~y~~~~GRR----KSWiiP~Q~-l~g~~m 85 (544)
T PF13000_consen 59 VDSVYSKRIGRR----KSWIIPIQY-LSGILM 85 (544)
T ss_pred hhhhcccccCCc----chhhhHHHH-HHHHHH
Confidence 557888888765 348788884 455543
No 120
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=54.81 E-value=1.3e+02 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHH-HHhcCCC
Q 021119 241 LTMNFILGISIVFISM-HQFFSPL 263 (317)
Q Consensus 241 lt~~~~lG~~lVi~gv-~ly~~~~ 263 (317)
-++..++|.++.+.++ |...+.+
T Consensus 283 ~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred chHHHHHHHHHHHHHHHHhccccc
Confidence 4567799999988875 3333433
No 121
>PHA03049 IMV membrane protein; Provisional
Probab=53.63 E-value=24 Score=25.29 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 021119 244 NFILGISIVFISMHQFF 260 (317)
Q Consensus 244 ~~~lG~~lVi~gv~ly~ 260 (317)
..+++.+++++|..+|-
T Consensus 5 ~~l~iICVaIi~lIvYg 21 (68)
T PHA03049 5 IILVIICVVIIGLIVYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778888888876554
No 122
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=50.59 E-value=1.1e+02 Score=31.03 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCC
Q 021119 246 ILGISIVFISMHQFFSPLSKVKDEP 270 (317)
Q Consensus 246 ~lG~~lVi~gv~ly~~~~~~~~~~~ 270 (317)
.+|.+..+.+++.+.+.-++.|+++
T Consensus 432 ~~~~i~~~~~~~~~~~~~~~~~~~~ 456 (511)
T TIGR00806 432 VLSIICFFGAGLDGLRYCKRGTHQP 456 (511)
T ss_pred HHHHHHHHHHHHHHhhhhcccccCC
Confidence 4454444445555555433334433
No 123
>COG4040 Predicted membrane protein [Function unknown]
Probab=49.08 E-value=54 Score=24.23 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021119 5 ANLYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQL 53 (317)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~all~~~~n~l~f~al~ 53 (317)
+|.+|-..++|.+-|.+..+..-..+.-.=++.|++|+....+.--+..
T Consensus 23 rdra~~lLYLn~~sFgisaliAlyv~t~mG~i~A~~yFi~STi~SNAia 71 (85)
T COG4040 23 RDRAAQLLYLNVVSFGISALIALYVRTDMGLIAALCYFIFSTIESNAIA 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhhhhhhHHH
Confidence 5667767777777777766665555544455666777766555444443
No 124
>PRK02237 hypothetical protein; Provisional
Probab=46.35 E-value=1.4e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=-0.027 Sum_probs=33.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 216 ILKKYSSTV--ATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 216 i~~~~~~~l--~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
.-+.++.+- -++.+.+.++.+-|+.||.+-++|.++.+.|+.+-
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 344555553 34556678888889999999999999999997543
No 125
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=45.14 E-value=90 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=34.9
Q ss_pred hHHHHHHHHHH--HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 021119 214 DTILKKYSSTV--ATIFTGLASAALFGHTLTMNFILGISIVFISMHQF 259 (317)
Q Consensus 214 ~ai~~~~~~~l--~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly 259 (317)
++--+.++.+- -++.+.+.++.+-|++|+.+-++|..+.+.|+.+-
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 44455556553 44567788888889999999999999999997643
No 126
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=44.60 E-value=1.2e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 021119 59 TVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLR 104 (317)
Q Consensus 59 ~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~ 104 (317)
.+..-...-++...+..+..=|.|.+++.|.+-.+.++|+.++...
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3444456667777778888889999999999999999998887654
No 127
>PRK04570 cell division protein ZipA; Provisional
Probab=44.54 E-value=63 Score=29.24 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCcCccccCCCC
Q 021119 249 ISIVFISMHQFFSPLSKVKDEPKNISLESVDSPK 282 (317)
Q Consensus 249 ~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~ 282 (317)
.++.+.+++++. ++|++++--|++..|...
T Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~ 44 (243)
T PRK04570 15 GLLLVAAIFLFG----RPKKSPQGRRVDKEEPQP 44 (243)
T ss_pred HHHHHHHHHHhc----CCCCCcccccccccCCCC
Confidence 344455677774 456666676777776644
No 128
>PRK11715 inner membrane protein; Provisional
Probab=44.28 E-value=3.4e+02 Score=27.04 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=36.6
Q ss_pred hcCCCCHHHHHHHHHHH--HHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021119 79 MKRRFSIIQWEALALLL--IGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQ 146 (317)
Q Consensus 79 L~erls~~q~lal~l~~--~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~ 146 (317)
=|.|+.+.|++=+.++. .=+.++..+.+ .+ .+.++++.++.|.++-+.|...++|+.
T Consensus 325 ~~~~iHpiQYlLVGlAl~lFYLLLLSlSEH------ig-----F~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLFYLLLLSLSEH------IG-----FTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHHHHHhh------hc-----hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35788888885443333 33334433322 11 345677888888899999999998875
No 129
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=43.89 E-value=2.3e+02 Score=26.54 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=45.9
Q ss_pred hcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 53 LYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 53 ~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
+...+.++..+....=.+|.++|++++.+.++....-+.++.+.|+.+...+.
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34567777777888888999999999999999999999999999999888765
No 130
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=42.08 E-value=1.3e+02 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Q 021119 241 LTMNFILGISIVFISMHQFFSPLSKVKDEPKN 272 (317)
Q Consensus 241 lt~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~ 272 (317)
++..|++++.++++|+.++.+.. |.|++|..
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~-~~~~~~~~ 284 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP-KGREAPGA 284 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh-ccCCCccc
Confidence 78899999999999976554322 34444433
No 131
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=41.13 E-value=6.9 Score=31.16 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCCCcCccccCCCC
Q 021119 246 ILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPK 282 (317)
Q Consensus 246 ~lG~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~ 282 (317)
.++.+.++.|..+....+++.++.-+|||.+.+|.+.
T Consensus 28 ~la~i~~~~g~~~~~~~~~~v~~v~eDER~~~I~ekA 64 (111)
T PF09946_consen 28 LLAVIVFLAGILLVYLYRRRVEDVVEDERTERISEKA 64 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 3444444455443333345555556999999997653
No 132
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=38.95 E-value=1.6e+02 Score=24.29 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHH-HHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHHHhcCCCCcCCCC
Q 021119 211 KYADTILKKYSST-VATIFTGLASAALFGHTLT--MNFILGISIVFISMHQFFSPLSKVKDE 269 (317)
Q Consensus 211 k~~~ai~~~~~~~-l~~v~t~l~s~llfge~lt--~~~~lG~~lVi~gv~ly~~~~~~~~~~ 269 (317)
...++.....++. ++-+..++.+..+.++..+ +..++.++++-.|=+.++++..|...+
T Consensus 54 Pr~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 54 PRTGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLRNVLR 115 (136)
T ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4455666666554 3445566777777774443 444555666656767777664444443
No 133
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=37.10 E-value=2.3e+02 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.442 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 021119 227 IFTGLASAALFGHTLTMNFILGISIVFISM 256 (317)
Q Consensus 227 v~t~l~s~llfge~lt~~~~lG~~lVi~gv 256 (317)
++-..+|.+.+++ -....++|..+...|+
T Consensus 72 lfyif~G~l~~~~-~~~~~i~g~~~~~~G~ 100 (136)
T PF08507_consen 72 LFYIFLGTLCLGQ-SILSIIIGLLLFLVGV 100 (136)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 4444555555555 2234466666666664
No 134
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=36.50 E-value=45 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCCCcCccccCCCC
Q 021119 245 FILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPK 282 (317)
Q Consensus 245 ~~lG~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~ 282 (317)
+++|+++++ |+++|+... +=+++...||+..-|.|.
T Consensus 53 FIlG~vl~l-Gilifs~y~-~C~~~~~~~r~n~s~iel 88 (91)
T PHA02680 53 FIVGAVLLL-GLFVFSMYR-KCSGSMPYERLNNTDIEL 88 (91)
T ss_pred HHHHHHHHH-HHHHHHHhc-ccCCCceeecccCCcccc
Confidence 455555554 688777665 555666667776655554
No 135
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=33.12 E-value=47 Score=31.01 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCCC
Q 021119 225 ATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKDE 269 (317)
Q Consensus 225 ~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~~ 269 (317)
+++.++..++++.|..-+..++....++-+|+.+....++++-+.
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 667888999999999999999999999999999998866555443
No 136
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=32.34 E-value=4.4e+02 Score=24.89 Aligned_cols=120 Identities=9% Similarity=0.048 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHH
Q 021119 12 LFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPAT-VKMLSNLKVFVIALLLKIIMKRRFSIIQWEA 90 (317)
Q Consensus 12 ~~~~~~p~~~~~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~-~~ll~~~~pi~talls~l~L~erls~~q~la 90 (317)
|+.+-.-.++|-+.+...+.+++.+|.+.|...-.-.-.|+.+..-+. .. .+. ..+-..|
T Consensus 52 ALf~TAatIIrQli~ty~~~~k~~lP~iGY~~a~~T~i~G~~~~~~~~~~~--------------~fV-----aGhVi~G 112 (347)
T PF10951_consen 52 ALFTTAATIIRQLIHTYNTFAKYLLPIIGYLAAAITIIGGIYIFSSGPNAA--------------YFV-----AGHVIFG 112 (347)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCChh--------------hhc-----cCceeec
Confidence 444444566777777777888999999998877766666666533211 11 111 1122233
Q ss_pred HHHHHHHHHHhhcCCC--------CCCC----CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 021119 91 LALLLIGISVNQLRSL--------PEGT----SALGLPVATGAYLYTLIFVTVPSLASVFNEYALKSQYDTSI 151 (317)
Q Consensus 91 l~l~~~Gv~iv~~~~~--------~~~~----~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k~~~~~~~ 151 (317)
+.+..+=|.-+..++. ..++ +...++ ...|..+..+..+++-.+-++.-.++++..+++-
T Consensus 113 vGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs-~~~~~~Liav~~~~~li~~iw~~~Ll~~~~~~p~ 184 (347)
T PF10951_consen 113 VGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFS-RGQGNILIAVPILCALIGWIWAIVLLSSSDEHPA 184 (347)
T ss_pred hhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444433333332221 1111 111111 2346677777788888888888887765433443
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=31.50 E-value=45 Score=24.05 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 021119 244 NFILGISIVFISMHQFFS 261 (317)
Q Consensus 244 ~~~lG~~lVi~gv~ly~~ 261 (317)
..+++.++++.|..+|.-
T Consensus 5 ~iLi~ICVaii~lIlY~i 22 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888999999776653
No 138
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=12 Score=34.72 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGI 98 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv 98 (317)
|-.+.+-+++.+.-|+..++-++.++|-++.+=...+-..=.+++..+++|.-+...|-+.++.+.|-
T Consensus 255 w~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs 322 (347)
T KOG1442|consen 255 WILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGS 322 (347)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehh
Confidence 33455567777777887777788899999988888899999999999999999888886655544443
No 139
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=30.10 E-value=34 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=17.7
Q ss_pred cCCcchHHHHHHHHHHHH-HHHHhcCCCCcCCCCC
Q 021119 237 FGHTLTMNFILGISIVFI-SMHQFFSPLSKVKDEP 270 (317)
Q Consensus 237 fge~lt~~~~lG~~lVi~-gv~ly~~~~~~~~~~~ 270 (317)
|+.+..+..++.+..+++ +++.+.....|.++++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKMKEDE 41 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 666666666555555443 4554444334555443
No 140
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=29.78 E-value=87 Score=31.49 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=5.6
Q ss_pred HHHHHhcCCCCc
Q 021119 254 ISMHQFFSPLSK 265 (317)
Q Consensus 254 ~gv~ly~~~~~~ 265 (317)
.+..+|...++|
T Consensus 452 ~~~~~y~~~~~~ 463 (507)
T TIGR00910 452 LPFIIYALHDKK 463 (507)
T ss_pred HHHHHHHHhccc
Confidence 454555543333
No 141
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=29.02 E-value=4.3e+02 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021119 119 TGAYLYTLIFVTVPSLASVFNEYALKS 145 (317)
Q Consensus 119 ~~G~~l~l~a~~~sal~~V~~ekl~k~ 145 (317)
..|+....++...+ +...+.|+-.|+
T Consensus 101 ~l~ya~~~la~~~a-~lyL~~~~~lk~ 126 (243)
T TIGR03144 101 ILSYAALLVGSLLS-IAYLLKTRKQNL 126 (243)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhc
Confidence 35666555555444 444555555553
No 142
>COG1971 Predicted membrane protein [Function unknown]
Probab=28.92 E-value=1.2e+02 Score=26.66 Aligned_cols=41 Identities=5% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH-HHHHHHhcC
Q 021119 221 SSTVATIFTGLASAALFGHTLTMNFILGISIV-FISMHQFFS 261 (317)
Q Consensus 221 ~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV-i~gv~ly~~ 261 (317)
.+..+|.+.+..+.++=+..-.+..|+|+.+. +.|.++-..
T Consensus 46 f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 46 FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776665555667776666554 468775443
No 143
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.25 E-value=2.3e+02 Score=24.81 Aligned_cols=6 Identities=17% Similarity=0.650 Sum_probs=2.3
Q ss_pred HHhcCC
Q 021119 77 IIMKRR 82 (317)
Q Consensus 77 l~L~er 82 (317)
.++|+|
T Consensus 195 ~~lkkk 200 (206)
T PF06570_consen 195 FYLKKK 200 (206)
T ss_pred HHHHHH
Confidence 333333
No 144
>PF13795 HupE_UreJ_2: HupE / UreJ protein
Probab=26.48 E-value=3.9e+02 Score=22.48 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHhhhhhHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHH
Q 021119 24 LLQAARNNVL-LAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLK 76 (317)
Q Consensus 24 ~~~~~~~~~~-~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~ 76 (317)
..+++|+..+ ...-.+.+.+.-.+.-.+.-..|+...-.+...+++++|+--.
T Consensus 27 ~~~~~~~ll~~vTaFTlgHSiTL~L~~~~~v~~~~~~VE~lIAlSI~~~A~~nl 80 (151)
T PF13795_consen 27 LFRSWKRLLKLVTAFTLGHSITLALAALGIVSVPSRLVEALIALSIAFVALENL 80 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHh
Confidence 4555554433 2333444555555555566667777777777777777765544
No 145
>PRK11469 hypothetical protein; Provisional
Probab=26.06 E-value=1.3e+02 Score=26.18 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH-HHHHHHhcC
Q 021119 220 YSSTVATIFTGLASAALFGHTLTMNFILGISIV-FISMHQFFS 261 (317)
Q Consensus 220 ~~~~l~~v~t~l~s~llfge~lt~~~~lG~~lV-i~gv~ly~~ 261 (317)
..+...|.+++..|..+-+-...+..++|+.+. +.|.++...
T Consensus 45 ~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e 87 (188)
T PRK11469 45 AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIE 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666665554433334456665544 458776554
No 146
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.93 E-value=5.7e+02 Score=24.15 Aligned_cols=6 Identities=67% Similarity=1.121 Sum_probs=2.7
Q ss_pred HHHcCC
Q 021119 234 AALFGH 239 (317)
Q Consensus 234 ~llfge 239 (317)
..++|+
T Consensus 115 ~~l~g~ 120 (385)
T PF03547_consen 115 QALFGE 120 (385)
T ss_pred HHHhcc
Confidence 334454
No 147
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=25.37 E-value=1.6e+02 Score=30.35 Aligned_cols=37 Identities=8% Similarity=-0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCCCcCccccCCCC
Q 021119 246 ILGISIVFISMHQFFSPLSKVKDEPKNISLESVDSPK 282 (317)
Q Consensus 246 ~lG~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~~~~~ 282 (317)
.++.+++++.-..++....++..++++...|.++++.
T Consensus 533 giAcl~~l~~~~~iq~~l~~~~~i~~~~~~e~~s~s~ 569 (618)
T KOG3762|consen 533 GIACLVTLALFISIQLLLKRRGFIKEQGLLEMESTSA 569 (618)
T ss_pred HHHHHHHHHHHHHhhhhhccccccCccCCcCcccccc
Confidence 4444555555667787778888888888888887774
No 148
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=25.23 E-value=3.9e+02 Score=25.46 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCH
Q 021119 7 LYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYAINNYLKFI-MQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSI 85 (317)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~all~~~~n~l~f~-al~~l~~s~~~ll~~~~pi~talls~l~L~erls~ 85 (317)
+|-+..-+.++|++-+-..+.++........+.....++.-.-+ +.++.|.-.++-=.-..++.=+++.+.+-.++...
T Consensus 121 lf~i~~iYLi~pLi~~~~v~~~~~~i~~~~l~I~~~~~~l~~~~~~~~~~~~~l~~~~~~f~yi~Y~ilG~~l~~~~~~~ 200 (332)
T COG3274 121 LFAILGIYLISPLIQVILVSNRKLLILIYLLLIVFNASTLPFLYGGFSWLPIDLYIYGDTFYYILYYILGRYLGTRQTQG 200 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhcccchhhhcccccCCcchhhhCCchHHHHHHHHHHHHHHHHhcc
Confidence 35556667778888777777766666655555554444433333 33444555444444555666666655553332222
Q ss_pred H--HHHHHHHHHHHHHH
Q 021119 86 I--QWEALALLLIGISV 100 (317)
Q Consensus 86 ~--q~lal~l~~~Gv~i 100 (317)
. .+.+..+..+|+.+
T Consensus 201 ~~~~~~a~~l~~~~~~~ 217 (332)
T COG3274 201 KKISRLALALFVLGVIF 217 (332)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 2 44444444444443
No 149
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=24.08 E-value=47 Score=29.38 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=8.0
Q ss_pred CcCCCCCCCcCcccc
Q 021119 264 SKVKDEPKNISLESV 278 (317)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (317)
+++|.|+++|++|+.
T Consensus 183 ~~~~~~~~~~~~~~~ 197 (201)
T PRK14766 183 IKSKIKTKKEKIENE 197 (201)
T ss_pred cchhhhhhhHHhhcc
Confidence 444555566556554
No 150
>PRK01637 hypothetical protein; Reviewed
Probab=23.47 E-value=2.9e+02 Score=25.42 Aligned_cols=18 Identities=0% Similarity=-0.173 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 021119 243 MNFILGISIVFISMHQFF 260 (317)
Q Consensus 243 ~~~~lG~~lVi~gv~ly~ 260 (317)
|..+.+.++.+++.+.+.
T Consensus 248 Wlyl~~~ilL~Gaelna~ 265 (286)
T PRK01637 248 WVYLSWCIVLLGAEITAT 265 (286)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554433
No 151
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.32 E-value=1.2e+02 Score=30.03 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHHHhcCCCCcCCCCCCCcCcccc
Q 021119 219 KYSSTVATIFTGLASAALFGHTLT-MNFILGISIVFISMHQFFSPLSKVKDEPKNISLESV 278 (317)
Q Consensus 219 ~~~~~l~~v~t~l~s~llfge~lt-~~~~lG~~lVi~gv~ly~~~~~~~~~~~~~~~~~~~ 278 (317)
++...+.++++.+ +++.++...- ...+-|++.+++|++++.. -||+||++.+--+
T Consensus 163 NiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~----~rd~Pqs~GLP~i 218 (448)
T COG2271 163 NIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFL----LRDRPQSEGLPPI 218 (448)
T ss_pred hcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHH----hCCCccccCCCCH
Confidence 3333444444433 5555543322 2345677777788888855 5666666555444
No 152
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.03 E-value=1.4e+02 Score=17.65 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHhc
Q 021119 240 TLTMNFILGISIVFISMHQFF 260 (317)
Q Consensus 240 ~lt~~~~lG~~lVi~gv~ly~ 260 (317)
.-++..++|++++..+.+++.
T Consensus 9 ~~~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 9 GNSLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred ccHHHHHHHHHHHHHHHHHhe
Confidence 345566777755555555543
No 153
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=22.83 E-value=8.7e+02 Score=25.23 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 021119 18 PVISFILLQAARNNVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLLIG 97 (317)
Q Consensus 18 p~~~~~~~~~~~~~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~~G 97 (317)
.+.+....|..+..+.-.+-|++|..............+.+..-... .-|++. +....+.++| +++.|..+.+++..
T Consensus 38 ~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgni~e~lA~~-llPlvl-l~~~~~~~~~-~~r~~~~lAl~~al 114 (616)
T PF10131_consen 38 GLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGNIPETLAFA-LLPLVL-LFLYRFIKKR-KYRYWILLALSMAL 114 (616)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcchHHHHHHHH-HHHHHH-HHHHHHHhcC-CchhHHHHHHHHHH
Confidence 35566677776664445555778887777777666666655554433 233332 2223333322 33445555444444
Q ss_pred H
Q 021119 98 I 98 (317)
Q Consensus 98 v 98 (317)
+
T Consensus 115 l 115 (616)
T PF10131_consen 115 L 115 (616)
T ss_pred H
Confidence 3
No 154
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=22.56 E-value=2.7e+02 Score=19.14 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021119 87 QWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144 (317)
Q Consensus 87 q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k 144 (317)
..+|.++.++|+++...|+. |....+++-.+.|......++.++
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp--------------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP--------------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC--------------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46788888999998877652 334444444445555556666554
No 155
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=21.92 E-value=4.1e+02 Score=21.05 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 021119 86 IQWEALALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFN 139 (317)
Q Consensus 86 ~q~lal~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ 139 (317)
.|++++++.++|..++.......+...........|....++ .++..+.++..
T Consensus 41 lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l-~~~Q~~~G~~~ 93 (137)
T PF03188_consen 41 LQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVL-ALLQPLLGFFR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHH-HHHHHHHHHHH
Confidence 377888888888777654332211111222234567554433 33444444443
No 156
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.79 E-value=1.4e+02 Score=24.32 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHh
Q 021119 245 FILGISIVFISMHQF 259 (317)
Q Consensus 245 ~~lG~~lVi~gv~ly 259 (317)
...|..-++.+..--
T Consensus 96 ~~~G~~~i~l~~~~~ 110 (136)
T PF08507_consen 96 FLVGVIYIILGFFCP 110 (136)
T ss_pred HHHHHHHHHHHHHcC
Confidence 456666666665543
No 157
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=20.31 E-value=1.1e+02 Score=27.32 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 021119 225 ATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPLSKVKD 268 (317)
Q Consensus 225 ~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~~~~~~ 268 (317)
...|..++++..+|+.+....++...+.+.|+.+..+.-+.-+|
T Consensus 89 NaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 89 NAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred hHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 44577788999999999999999999999998776654333333
Done!