Query 021119
Match_columns 317
No_of_seqs 162 out of 1167
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:01:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 7.9E-07 2.7E-11 69.9 13.5 74 32-105 31-105 (110)
2 2i68_A Protein EMRE; transmemb 98.5 3.7E-07 1.3E-11 74.6 8.0 73 33-105 32-105 (137)
3 2i68_A Protein EMRE; transmemb 98.3 8.2E-07 2.8E-11 72.6 5.4 60 204-263 45-105 (137)
4 3b5d_A Multidrug transporter E 97.8 0.00014 4.9E-09 56.8 10.0 58 205-262 46-104 (110)
5 3b9w_A Ammonium transporter fa 69.0 77 0.0026 29.8 18.1 134 7-144 81-230 (407)
6 3dh4_A Sodium/glucose cotransp 51.3 1.3E+02 0.0045 28.9 11.7 14 133-146 343-356 (530)
7 2xq2_A Sodium/glucose cotransp 39.1 2.8E+02 0.0096 26.9 12.6 13 133-145 372-384 (593)
8 2jln_A MHP1; hydantoin, transp 36.0 25 0.00084 33.9 3.7 14 224-237 370-384 (501)
9 4djk_A Probable glutamate/gamm 24.3 94 0.0032 29.1 5.5 10 301-310 499-508 (511)
10 2l2t_A Receptor tyrosine-prote 16.8 1.1E+02 0.0037 19.3 2.7 11 251-261 25-35 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.63 E-value=7.9e-07 Score=69.92 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 32 VLLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 32 ~~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
++...-.++|.++..+..++++++|.+.+..+ ..+.|+++++++++++||++++.||+|+.+.++|+..+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34444455788999999999999999999888 899999999999999999999999999999999999987643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=3.7e-07 Score=74.65 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCC
Q 021119 33 LLAVPAFLYAINNYLKFIMQLYFNPATVKML-SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 105 (317)
Q Consensus 33 ~~~~~all~~~~n~l~f~al~~l~~s~~~ll-~~~~pi~talls~l~L~erls~~q~lal~l~~~Gv~iv~~~~ 105 (317)
+..+-.+++.++..+.+++++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...+
T Consensus 32 ~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455788999999999999999988888 899999999999999999999999999999999999987643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.27 E-value=8.2e-07 Score=72.55 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCCC
Q 021119 204 ILSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 263 (317)
Q Consensus 204 ~~v~~~~k~~~ai~~~~~-~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~~ 263 (317)
.+..+.+|+.+....... ..+.++++.++|+++|||++|+.+++|+++|+.|+++.+...
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666655544444 688999999999999999999999999999999999887643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.81 E-value=0.00014 Score=56.83 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=47.4
Q ss_pred HHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhcCC
Q 021119 205 LSSFFFKYADTILKKYS-STVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 262 (317)
Q Consensus 205 ~v~~~~k~~~ai~~~~~-~~l~~v~t~l~s~llfge~lt~~~~lG~~lVi~gv~ly~~~ 262 (317)
+....+|+.+....... ..+.++++.+.++++|||++|+.+++|.++|+.|+.+.+..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34556677665554343 67899999999999999999999999999999999988763
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=69.02 E-value=77 Score=29.79 Aligned_cols=134 Identities=11% Similarity=0.025 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHH--------hcCCHHHHHHHhhhHHHHHHHHHHH
Q 021119 7 LYRMVLFYLQMPVISFILLQAARNNVLLAVPAFLYA-INNYLKFIMQ--------LYFNPATVKMLSNLKVFVIALLLKI 77 (317)
Q Consensus 7 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~all~~-~~n~l~f~al--------~~l~~s~~~ll~~~~pi~talls~l 77 (317)
+|.| .|.+..|.++.--+-++-+...+.+.++..+ .+.....+.. -..|-+=..++-. .--+.++...+
T Consensus 81 ~fq~-~Faa~t~~IvsGAvaeR~kf~~~li~~~~~~~vY~~~~~wvw~gG~~~~~G~~DfAGs~vVH~-~gG~~aLa~a~ 158 (407)
T 3b9w_A 81 VIYA-EFAVATGLIAMGAVLGRLRVFQYALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIHA-FGAYFGLGVSI 158 (407)
T ss_dssp HHHH-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTCCCTTCTTTTHH-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhccceeEEEeCCcchhhcceeeccCceEEEe-CchHHHHHHHH
Confidence 3443 6888888888766666655555555554322 2322222222 1222211111111 22355666777
Q ss_pred HhcCCCCH-----HHHHHHHHHHHHHHHhh--cCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021119 78 IMKRRFSI-----IQWEALALLLIGISVNQ--LRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEYALK 144 (317)
Q Consensus 78 ~L~erls~-----~q~lal~l~~~Gv~iv~--~~~~~~~~~~~~~~~~~~G~~l~l~a~~~sal~~V~~ekl~k 144 (317)
+|++|..+ .+--.+.+.++|..+.= ..+...+ ...+ .......+=+.+++..+++.....+++.+
T Consensus 159 ~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G-l~~~-~~~~~a~~NT~lAaaag~l~~~~~~~~~~ 230 (407)
T 3b9w_A 159 ALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA-IVPF-EQMPQTIVNTLLALCGATLATYFLSALFH 230 (407)
T ss_dssp HHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT-TSCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh-hccc-hhhHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 78776422 12334455555554432 1111000 0001 01112333445666666777776666533
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=51.27 E-value=1.3e+02 Score=28.88 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhc
Q 021119 133 SLASVFNEYALKSQ 146 (317)
Q Consensus 133 al~~V~~ekl~k~~ 146 (317)
+.+++..+-++|+.
T Consensus 343 s~st~~~~Diy~~~ 356 (530)
T 3dh4_A 343 STATIFTMDIYKEY 356 (530)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HhHHHHHhHHHHHh
Confidence 45566667666653
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=39.12 E-value=2.8e+02 Score=26.95 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhh
Q 021119 133 SLASVFNEYALKS 145 (317)
Q Consensus 133 al~~V~~ekl~k~ 145 (317)
+.+++..+-++|+
T Consensus 372 a~st~~~~Diy~~ 384 (593)
T 2xq2_A 372 STATIFTMDIYKE 384 (593)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555666655554
No 8
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=36.03 E-value=25 Score=33.91 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=6.9
Q ss_pred HHHHHHHH-HHHHHc
Q 021119 224 VATIFTGL-ASAALF 237 (317)
Q Consensus 224 l~~v~t~l-~s~llf 237 (317)
+.|+.+.+ ..++++
T Consensus 370 l~P~~gI~l~Dy~i~ 384 (501)
T 2jln_A 370 LGPLAGIMISDYFLV 384 (501)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 35555554 445544
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.29 E-value=94 Score=29.11 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=1.2
Q ss_pred cccccccccC
Q 021119 301 DASHRAVNEE 310 (317)
Q Consensus 301 ~~~~~~~~~~ 310 (317)
++.|.++.+|
T Consensus 499 ~~~~~i~~~~ 508 (511)
T 4djk_A 499 RSPHYIVMND 508 (511)
T ss_dssp CCC-------
T ss_pred cCCeeecccc
Confidence 3355555444
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.82 E-value=1.1e+02 Score=19.30 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=5.7
Q ss_pred HHHHHHHHhcC
Q 021119 251 IVFISMHQFFS 261 (317)
Q Consensus 251 lVi~gv~ly~~ 261 (317)
++..++++|-+
T Consensus 25 ii~~~~~~~~R 35 (44)
T 2l2t_A 25 IVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34445556655
Done!