Query 021119
Match_columns 317
No_of_seqs 162 out of 1167
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 13:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 39.7 73 0.0053 24.8 9.1 27 228-254 96-122 (222)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 25.1 1.1E+02 0.008 24.5 7.7 61 31-95 2-62 (248)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.0 5.8E+02 0.042 19.8 18.4 16 84-99 20-35 (447)
4 d1lkia_ a.26.1.1 (A:) Leukemia 5.9 97 0.007 22.8 1.3 13 6-18 74-86 (172)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.2 1.7E+02 0.013 19.4 2.3 9 252-260 42-50 (100)
6 d2b9va1 b.18.1.13 (A:435-666) 4.7 1.4E+02 0.01 23.3 1.7 16 301-316 140-155 (232)
7 d2bnma2 b.82.1.10 (A:77-198) H 4.5 2.3E+02 0.017 19.3 2.8 25 286-310 40-64 (122)
8 d1ju3a1 b.18.1.13 (A:352-574) 3.3 1.9E+02 0.014 22.0 1.4 15 302-316 132-146 (223)
9 d1lama2 c.50.1.1 (A:1-159) Leu 3.2 1.3E+02 0.0096 21.7 0.3 18 253-270 124-141 (159)
10 d2i09a1 c.76.1.5 (A:2-107,A:22 3.2 1.4E+02 0.01 21.9 0.4 27 288-314 211-238 (283)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=39.73 E-value=73 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHH
Q 021119 228 FTGLASAALFGHTLTMNFILGISIVFI 254 (317)
Q Consensus 228 ~t~l~s~llfge~lt~~~~lG~~lVi~ 254 (317)
..++.+..++|.+++....+|..+.++
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 345566777899999988888877664
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=25.12 E-value=1.1e+02 Score=24.52 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 021119 31 NVLLAVPAFLYAINNYLKFIMQLYFNPATVKMLSNLKVFVIALLLKIIMKRRFSIIQWEALALLL 95 (317)
Q Consensus 31 ~~~~~~~all~~~~n~l~f~al~~l~~s~~~ll~~~~pi~talls~l~L~erls~~q~lal~l~~ 95 (317)
..|+++.|++.++.-.+....+..-....+. ...+.+++.-+.++.+|.-++||+.=.+++
T Consensus 2 ~lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 2 ALKWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp CCTHHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHH
Confidence 3567777777776666655555544443333 334566677788888888888885443333
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.01 E-value=5.8e+02 Score=19.83 Aligned_cols=16 Identities=13% Similarity=0.542 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHH
Q 021119 84 SIIQWEALALLLIGIS 99 (317)
Q Consensus 84 s~~q~lal~l~~~Gv~ 99 (317)
++++|.-+.+.++|..
T Consensus 20 ~~~~w~i~~~~~~~~~ 35 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYA 35 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4456666666655543
No 4
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.85 E-value=97 Score=22.81 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHH
Q 021119 6 NLYRMVLFYLQMP 18 (317)
Q Consensus 6 ~~~~~~~~~~~~p 18 (317)
.||||+||+---+
T Consensus 74 elYri~ayL~aSl 86 (172)
T d1lkia_ 74 ELYRMVAYLSASL 86 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc
Confidence 5777777665433
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.19 E-value=1.7e+02 Score=19.43 Aligned_cols=9 Identities=0% Similarity=-0.023 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q 021119 252 VFISMHQFF 260 (317)
Q Consensus 252 Vi~gv~ly~ 260 (317)
++.++..|.
T Consensus 42 ~V~~~l~~~ 50 (100)
T d3dtub2 42 FVTLLILYA 50 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 6
>d2b9va1 b.18.1.13 (A:435-666) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}
Probab=4.72 E-value=1.4e+02 Score=23.25 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.5
Q ss_pred cccccccccCCCCCCC
Q 021119 301 DASHRAVNEEKAPLLP 316 (317)
Q Consensus 301 ~~~~~~~~~~~~~~~~ 316 (317)
..+||..|++++|+-|
T Consensus 140 r~s~R~~~~~~~~~~p 155 (232)
T d2b9va1 140 RGRYRKDFAKPEALQP 155 (232)
T ss_dssp EGGGSSCSSSCCCCCT
T ss_pred eeeccccccCccccCC
Confidence 4589999999999876
No 7
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=4.53 E-value=2.3e+02 Score=19.28 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=14.2
Q ss_pred cCCccccccCCCccccccccccccC
Q 021119 286 SKDTSFIGMAAGANEDASHRAVNEE 310 (317)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (317)
..+...+....++.+|..+..+|+.
T Consensus 40 ~~~~~~i~v~~~~~~~~~~~~~H~~ 64 (122)
T d2bnma2 40 SLVPLVVDVLTDNPDDAKFNSGHAG 64 (122)
T ss_dssp TCEEEEEEECCCCGGGCCCCCCCSS
T ss_pred ccEeEEEEEeCCCCCccccCCCccc
Confidence 3344455566666666665555554
No 8
>d1ju3a1 b.18.1.13 (A:352-574) Bacterial cocaine esterase, C-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}
Probab=3.32 E-value=1.9e+02 Score=21.95 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=12.9
Q ss_pred ccccccccCCCCCCC
Q 021119 302 ASHRAVNEEKAPLLP 316 (317)
Q Consensus 302 ~~~~~~~~~~~~~~~ 316 (317)
.+||.+|++++|+-|
T Consensus 132 ~~~r~~~~~~~~~~p 146 (223)
T d1ju3a1 132 MRYRETLVNPTLIEA 146 (223)
T ss_dssp GGGSSCSSSCCCCCT
T ss_pred eccccCcccccccCC
Confidence 479999999999876
No 9
>d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.25 E-value=1.3e+02 Score=21.68 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCCcCCCCC
Q 021119 253 FISMHQFFSPLSKVKDEP 270 (317)
Q Consensus 253 i~gv~ly~~~~~~~~~~~ 270 (317)
..|.|-|..+++++|+++
T Consensus 124 ~L~~Y~F~~yKskkk~~~ 141 (159)
T d1lama2 124 VLGLYEYDDLKQKRKVVV 141 (159)
T ss_dssp HHHHCCCCTTCSSCCCCC
T ss_pred HhCcEeccccccCCCCCC
Confidence 347788887776654443
No 10
>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}
Probab=3.21 E-value=1.4e+02 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.7
Q ss_pred CccccccCCCccccccccccccC-CCCC
Q 021119 288 DTSFIGMAAGANEDASHRAVNEE-KAPL 314 (317)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 314 (317)
++..+++.+.++++..|+..|.. |.|+
T Consensus 211 ~~~~~~t~~~~~~~g~~~~~~~~~rvPl 238 (283)
T d2i09a1 211 DDLLLITADHGNDPTYAGTDHTREYVPL 238 (283)
T ss_dssp TEEEEEECSSBCCTTSSSSSCBCBCEEE
T ss_pred cceeEEEEeccCCCCCCCcCCCCeeEEE
Confidence 34556777777777777666543 5554
Done!