BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021120
(317 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488729|ref|XP_002280233.2| PREDICTED: uncharacterized protein LOC100242330 [Vitis vinifera]
gi|296087711|emb|CBI34967.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 180/312 (57%), Positives = 225/312 (72%), Gaps = 29/312 (9%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+EKDAFYVVRKGD+VG+YK+ S+CQ QAGFSV DPS++VYKGY L K+AE +LASHGL
Sbjct: 1 MEEEKDAFYVVRKGDIVGLYKSFSECQAQAGFSVCDPSVSVYKGYCLPKDAEVFLASHGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K++SY ++A+DVK D+FGK+ CP Q+P SS G++S +
Sbjct: 61 KNASYVINAADVKGDIFGKLQACPFQQPGSS-------------------KGTSSQDLPQ 101
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
++ H +++ A G S S N QR H ++C+ Q++ NC+S L+F
Sbjct: 102 KRLH---------EAIESINFGAVGPKSISTNCQRKHSRLENCIEAQAMSSNCHSWLLQF 152
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPGQAGAGAVLRA+DGS V LREGVGIATNNVAEYRALILG+KYAL+KG K I
Sbjct: 153 DGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILGMKYALKKGIKRI 212
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R +GDS+LVCMQ QGLWK NQN+A LC+EAKEL +KF SFQI H+LR NSEADAQAN+
Sbjct: 213 RARGDSQLVCMQFQGLWKTKNQNMADLCEEAKELGKKFLSFQIEHVLREFNSEADAQANL 272
Query: 300 GIYLKDGQVEAE 311
+ L +GQV+ E
Sbjct: 273 AVNLTNGQVQEE 284
>gi|255552696|ref|XP_002517391.1| nuclease, putative [Ricinus communis]
gi|223543402|gb|EEF44933.1| nuclease, putative [Ricinus communis]
Length = 255
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 210/314 (66%), Gaps = 62/314 (19%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+EKD FYVVRKGDVVGIYK+L DCQ Q G SV +PS++V+KGYGL+K+AE+YL SHG+
Sbjct: 1 MEEEKDVFYVVRKGDVVGIYKSLRDCQAQVGSSVCNPSVSVFKGYGLAKDAEDYLVSHGI 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K +++S+ A+DV+ DLFGK+VPCP Q+PA
Sbjct: 61 KDAAFSIHATDVQPDLFGKLVPCPFQQPA------------------------------- 89
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
F+E N S P++ GS S SC LEF
Sbjct: 90 ----FSEGKALNKDSSPKSSRGVLGSMS--------------------------SCILEF 119
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG AGAGAVLRAEDGS V LREG+G ATNNVAEYRA+ILGLK+AL+KG+KHI
Sbjct: 120 DGASKGNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHALRKGFKHI 179
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
RV+GDS LV MQI+GLWKI +QN+A LCKEAKELK KF SFQI H+LR NSEAD QAN+
Sbjct: 180 RVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIEHVLREFNSEADTQANL 239
Query: 300 GIYLKDGQVEAECS 313
+ LKDGQ+E +CS
Sbjct: 240 AVNLKDGQIEEDCS 253
>gi|365222890|gb|AEW69797.1| Hop-interacting protein THI034 [Solanum lycopersicum]
Length = 288
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/318 (54%), Positives = 221/318 (69%), Gaps = 32/318 (10%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M DEKDAFYVVRKGDV+G+YK LSD Q S+ +P+++V+KGY L+KE+EEYLASHGL
Sbjct: 1 MGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEK-VSDEVSLPKMLREVAAAGSTSISIN 119
K++ YS+ SDV+ DLFG ++PCP ++P SS +K V V +M E+ A S S +
Sbjct: 61 KNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVA--SPSFAAA 118
Query: 120 TQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLE 179
Q++ DN ++ A +S+ PY SC LE
Sbjct: 119 GQQKLAKLDN----------FLEAPPISSYP------------------SPYMQCSCILE 150
Query: 180 FDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGAGAVLRA DGS V+RLREGVG+ATNNVAEYR +ILGL+YAL+KG+KH
Sbjct: 151 FDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKH 210
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I+V+GDSKLVCMQ QG+WK NQN+A L K KELK++F SFQINH+ R N+EADAQAN
Sbjct: 211 IKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQAN 270
Query: 299 MGIYLKDGQVEAECSSFT 316
+ +YLK+G+++ EC T
Sbjct: 271 LAVYLKNGEIQVECDMIT 288
>gi|224108115|ref|XP_002314727.1| predicted protein [Populus trichocarpa]
gi|222863767|gb|EEF00898.1| predicted protein [Populus trichocarpa]
Length = 282
Score = 326 bits (836), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 166/312 (53%), Positives = 213/312 (68%), Gaps = 33/312 (10%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M+ E DAF+VVRKGDVVG+YK +DCQ Q G S+ DP ++VYKGY LSK++E YL SHGL
Sbjct: 1 MDHENDAFFVVRKGDVVGVYKNFADCQAQVGSSICDPPVSVYKGYSLSKDSEAYLVSHGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ Y+V A+D+K DLFG ++PCP Q+PASS + ++ +T
Sbjct: 61 QNALYTVRAADLKEDLFGVLMPCPFQQPASSD--------------------AETLKNDT 100
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
+KR + + + AGSTS H N D+ Q+ N SC LEF
Sbjct: 101 KKR--------SREVLGSEITDTAGSTSM----MSKHANLDTQAECQAQNSNSRSCLLEF 148
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPGQAGAGAVLR +DGS + RLREG+GIATNN+AEYRA++LG+KYALQKGY I
Sbjct: 149 DGASKGNPGQAGAGAVLRTDDGSLICRLREGLGIATNNMAEYRAILLGMKYALQKGYTKI 208
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+V+GDSKLVCMQIQG WK + N+ LC EAK+LK F SF I+H+LR NSEADAQAN+
Sbjct: 209 QVKGDSKLVCMQIQGSWKAKHVNITNLCTEAKKLKNSFLSFHISHVLREFNSEADAQANL 268
Query: 300 GIYLKDGQVEAE 311
++L DG+V+ E
Sbjct: 269 AVHLADGEVQEE 280
>gi|224077608|ref|XP_002305325.1| predicted protein [Populus trichocarpa]
gi|222848289|gb|EEE85836.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/314 (54%), Positives = 210/314 (66%), Gaps = 62/314 (19%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQA-GFSVRDPSLTVYKGYGLSKEAEEYLASHG 59
ME+EKDAFYVVRKGD++G+Y SDCQLQA SV +PS++V+KGYGL KEA+EYL+SHG
Sbjct: 1 MEEEKDAFYVVRKGDIIGVYNNFSDCQLQAQSSSVCNPSVSVFKGYGLPKEAKEYLSSHG 60
Query: 60 LKSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISIN 119
L +++YS+ A DV++DLFGK++PCP QEPA
Sbjct: 61 LNNAAYSIQAPDVQNDLFGKLLPCPFQEPA------------------------------ 90
Query: 120 TQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLE 179
+ R DN + + +P+ +S+P SC LE
Sbjct: 91 SSFRAKELDNNFPPKRLPQP--------------------------LESIP----SCILE 120
Query: 180 FDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGAGAVLRAEDGS V RLREG+GIATNNVAEYRA++LGLK+AL+KG+K+
Sbjct: 121 FDGASKGNPGPAGAGAVLRAEDGSMVCRLREGLGIATNNVAEYRAVLLGLKHALKKGFKY 180
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I VQGDS LVCMQIQGLWK+ NQNLA LCKEAKELK+ F SFQI H+ R N EAD QAN
Sbjct: 181 ICVQGDSNLVCMQIQGLWKLKNQNLADLCKEAKELKDMFTSFQIKHVPREFNFEADVQAN 240
Query: 299 MGIYLKDGQVEAEC 312
+ L+DGQ+E +C
Sbjct: 241 LAANLRDGQIEEDC 254
>gi|356565894|ref|XP_003551171.1| PREDICTED: uncharacterized protein LOC100809644 [Glycine max]
Length = 345
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 211/313 (67%), Gaps = 41/313 (13%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M+ EKDAFYVVRKGDVVGIY +L+D Q Q G SV +P ++V+KGY LSK+ EEYL SHGL
Sbjct: 72 MKQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVFKGYSLSKDTEEYLVSHGL 131
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K++ Y++ A+D+K DLFG +VPCPLQEP++ + +VS + S+ +
Sbjct: 132 KNALYTIRATDLKEDLFGMLVPCPLQEPSTKESTSNKDVSKKR-----------SLGVLG 180
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
Q ++ Q V ++ A A T C +EF
Sbjct: 181 QDEKVISEDPLRKQ-VKLDHAAVAEQT----------------------------CFVEF 211
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG+AGAGA+LRA DGS + RLREGVGIATNN AEYRA+ILG+KYAL+KG+ I
Sbjct: 212 DGASKGNPGKAGAGAILRANDGSLICRLREGVGIATNNAAEYRAMILGMKYALKKGFTGI 271
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R+QGDSKLVCMQI G WK+ N+NL+ L AKELK+KF SFQI+H+LRN NS+ADAQAN+
Sbjct: 272 RIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANL 331
Query: 300 GIYLKDGQVEAEC 312
I L DGQV+ EC
Sbjct: 332 AINLADGQVQEEC 344
>gi|296086505|emb|CBI32094.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 166/311 (53%), Positives = 218/311 (70%), Gaps = 31/311 (9%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+EKDAF+VVRKGDVVG+YKT SDCQ Q G S+ DP ++VYKGY L K+ EEYL S GL
Sbjct: 144 MEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGL 203
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASS-GEKVSDEVSLPKMLREVAAAGSTSISIN 119
+++ Y++ A+D+K DLFGK++PC Q+ ASS GE +S + LP RE +
Sbjct: 204 RNALYTIRAADLKEDLFGKLMPCAFQQTASSKGEILSKD--LP---RESS---------- 248
Query: 120 TQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLE 179
+ + V A S + + + H+ D + Q++ +C SC +E
Sbjct: 249 -------------QEVMGLEIVGAVESRPITTDPLKEHIKLDR-VEAQALFSDCRSCVVE 294
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGA AVLR++ G V R+REG+G+ATNNVAEY+A+ILGLKYAL+KGY
Sbjct: 295 FDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTS 354
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
IRVQGDSKLVCMQ+QGLWK N+N++ LCKEAK+LK +F S +INH+LR LNSEADAQAN
Sbjct: 355 IRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQAN 414
Query: 299 MGIYLKDGQVE 309
+ ++L G+V+
Sbjct: 415 LAVHLAVGEVQ 425
>gi|356526860|ref|XP_003532034.1| PREDICTED: uncharacterized protein LOC100779114 [Glycine max]
Length = 356
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 210/313 (67%), Gaps = 35/313 (11%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME EKDAFYVVRKGDVVGIY +L+D Q Q G SV +P ++VYKGY LSK+ EEYL SHGL
Sbjct: 77 MEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGL 136
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K++ Y++ A+D+K DLFG +VPCP QEP++ + +VS + S+ +
Sbjct: 137 KNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVSKQR-----------SLGVLA 185
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
Q ++ + Q V Y A + S + T C +EF
Sbjct: 186 QDEKVISEDPFRKQ-VKLEYAEVAEAPSHATRT----------------------CFVEF 222
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG+AGAGA+LRA DGS + R+REGVGIATNN AEYRA+ILG+KYAL+KG+ I
Sbjct: 223 DGASKGNPGKAGAGAILRANDGSLICRVREGVGIATNNAAEYRAMILGMKYALKKGFTGI 282
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+QGDSKLVCMQI G WK+ N+NL L AKELK+KF SFQI+H+LRN NS+ADAQAN+
Sbjct: 283 CIQGDSKLVCMQIDGSWKVKNENLFTLYNVAKELKDKFSSFQISHVLRNFNSDADAQANL 342
Query: 300 GIYLKDGQVEAEC 312
I L DGQV+ EC
Sbjct: 343 AINLVDGQVQEEC 355
>gi|356550140|ref|XP_003543447.1| PREDICTED: uncharacterized protein LOC100796237 [Glycine max]
Length = 283
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 210/313 (67%), Gaps = 34/313 (10%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M +EKDAFYVVRKGDVVGIYK+ SD Q SV +++YKGY L ++ EEYL SHGL
Sbjct: 1 MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K + YS+SA+DV LFG++V CP Q+P SSG + + S + L+ +I +T
Sbjct: 61 KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQ-------GAIQFDT 113
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
K AGS S+ N+ R+H S Q+ +C SCTL F
Sbjct: 114 GK--------------------LAGSFSYPPNSLRNHTLGGS----QAEWSSCLSCTLHF 149
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG AGAGA+L DGS VYRLREGVGI TNNVAEYR+LILGLK+AL+KGYKHI
Sbjct: 150 DGASKGNPGPAGAGAILH--DGSKVYRLREGVGIQTNNVAEYRSLILGLKHALKKGYKHI 207
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
VQGDS LVC QIQGLWKI NQN+ LC EAKELK+KF SF+I+HI R NSEADAQAN+
Sbjct: 208 IVQGDSLLVCNQIQGLWKIKNQNMGTLCAEAKELKDKFLSFKISHIPREYNSEADAQANL 267
Query: 300 GIYLKDGQVEAEC 312
I L+ +V+ +C
Sbjct: 268 AINLRACEVQEDC 280
>gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]
gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis]
Length = 262
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/313 (51%), Positives = 205/313 (65%), Gaps = 56/313 (17%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME EKDAF+VVRKGDVVG+YK+ +DCQ Q G SV DP ++VYKGY LSK+ EEYL S GL
Sbjct: 1 MEQEKDAFFVVRKGDVVGVYKSFTDCQAQVGSSVCDPPVSVYKGYSLSKDTEEYLVSRGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ Y++ A D+K DLFG +VPCP QE S ++D +
Sbjct: 61 QNALYAIRAQDLKEDLFGTLVPCPFQETDGSASGLTDPL--------------------- 99
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
++H DN T++ Q++ Y+ SC LEF
Sbjct: 100 -RKHAKLDN--QTEA-------------------------------QALYYDDDSCILEF 125
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG AGAGA+LR DG + RLREG+G TNNVAEYRA+ILG+KYAL+KGY I
Sbjct: 126 DGASKGNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKKGYTKI 185
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
RVQGDSKLVC Q+QGLWK+ ++++ L ++AK+LK+KF SFQI+H+LR LNSEADAQAN+
Sbjct: 186 RVQGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQISHVLRALNSEADAQANL 245
Query: 300 GIYLKDGQVEAEC 312
I L DGQV+ EC
Sbjct: 246 AIQLADGQVQEEC 258
>gi|30678332|ref|NP_186790.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|145331720|ref|NP_001078087.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640141|gb|AEE73662.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332640142|gb|AEE73663.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 294
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/310 (51%), Positives = 212/310 (68%), Gaps = 26/310 (8%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
MEDEKDAFY+VRKGD++G+Y++LS+CQ QAG SV P+++VYKGYG K AE+ L+S G+
Sbjct: 5 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K++ +SV+AS VK D FGK++PCP+Q+P+SS + ++ S K L+++ + S S S +
Sbjct: 65 KNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPSP 124
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
++ +N + +P S L T++ SCT+EF
Sbjct: 125 PQKQLKIENDM-LRRIP------------------------SSLLTRTPIRQNDSCTIEF 159
Query: 181 DGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG+AGAGAVLRA D SV + LREGVG ATNNVAEYRAL+LGL+ AL KG+K++
Sbjct: 160 DGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNV 219
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEAD QAN
Sbjct: 220 HVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANS 279
Query: 300 GIYLKDGQVE 309
I+L DGQ +
Sbjct: 280 AIFLADGQTQ 289
>gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H [Arabidopsis thaliana]
Length = 290
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/310 (51%), Positives = 212/310 (68%), Gaps = 26/310 (8%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
MEDEKDAFY+VRKGD++G+Y++LS+CQ QAG SV P+++VYKGYG K AE+ L+S G+
Sbjct: 1 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K++ +SV+AS VK D FGK++PCP+Q+P+SS + ++ S K L+++ + S S S +
Sbjct: 61 KNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPSP 120
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
++ +N + +P S L T++ SCT+EF
Sbjct: 121 PQKQLKIENDM-LRRIP------------------------SSLLTRTPIRQNDSCTIEF 155
Query: 181 DGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG+AGAGAVLRA D SV + LREGVG ATNNVAEYRAL+LGL+ AL KG+K++
Sbjct: 156 DGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNV 215
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEAD QAN
Sbjct: 216 HVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANS 275
Query: 300 GIYLKDGQVE 309
I+L DGQ +
Sbjct: 276 AIFLADGQTQ 285
>gi|34146846|gb|AAQ62431.1| At3g01410 [Arabidopsis thaliana]
gi|51970934|dbj|BAD44159.1| putative RNase H [Arabidopsis thaliana]
Length = 294
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 158/310 (50%), Positives = 212/310 (68%), Gaps = 26/310 (8%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
MEDEKDAFY+VRKGD++G+Y++LS+CQ QAG SV P+++VYKGYG K AE+ L+S G+
Sbjct: 5 MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ +SV+AS VK D FGK++PCP+Q+P+SS + ++ S K L+++ + S S S +
Sbjct: 65 RNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPSP 124
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
++ +N + +P S L T++ SCT+EF
Sbjct: 125 PQKQLKIENDM-LRRIP------------------------SSLLTRTPIRQNDSCTIEF 159
Query: 181 DGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG+AGAGAVLRA D SV + LREGVG ATNNVAEYRAL+LGL+ AL KG+K++
Sbjct: 160 DGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNV 219
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V GDS LVCMQ+QG WK N+ +A LCK+AKEL F++F I HI R NSEAD QAN
Sbjct: 220 HVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANS 279
Query: 300 GIYLKDGQVE 309
I+L DGQ +
Sbjct: 280 AIFLADGQTQ 289
>gi|359473412|ref|XP_002266599.2| PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera]
Length = 453
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/307 (50%), Positives = 198/307 (64%), Gaps = 57/307 (18%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+EKDAF+VVRKGDVVG+YKT SDCQ Q G S+ DP ++VYKGY L K+ EEYL S GL
Sbjct: 1 MEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ Y++ A+D+K DLFGK++PC Q A S I+ +
Sbjct: 61 RNALYTIRAADLKEDLFGKLMPCAFQ----------------------GAVESRPITTDP 98
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
K H D + Q++ +C SC +EF
Sbjct: 99 LKEHIKLDR----------------------------------VEAQALFSDCRSCVVEF 124
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG AGA AVLR++ G V R+REG+G+ATNNVAEY+A+ILGLKYAL+KGY I
Sbjct: 125 DGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSI 184
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
RVQGDSKLVCMQ+QGLWK N+N++ LCKEAK+LK +F S +INH+LR LNSEADAQAN+
Sbjct: 185 RVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQANL 244
Query: 300 GIYLKDG 306
++L G
Sbjct: 245 AVHLAGG 251
>gi|449452100|ref|XP_004143798.1| PREDICTED: uncharacterized protein LOC101210930 [Cucumis sativus]
Length = 373
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 159/312 (50%), Positives = 209/312 (66%), Gaps = 31/312 (9%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
+E E F+VVRKGDVVG+YK+ SDCQ Q G S+ D ++V+KG+ L K+ EEYLAS GL
Sbjct: 86 VESEMGDFFVVRKGDVVGVYKSFSDCQAQIGSSICDLPVSVFKGHSLPKDTEEYLASVGL 145
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQ--EPASSGEKVSDEVSLPKMLREVAAAGSTSISI 118
K++ Y++ A+D++ DLFG + PC + + +GE S + ++ K RE
Sbjct: 146 KNALYTIKAADMRPDLFGSLAPCTFHGGDTSLTGE-TSGQDAIKKRSREAI--------- 195
Query: 119 NTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTL 178
VPEN V + T + R H+ + + + SV N SC L
Sbjct: 196 -----------------VPEN-VGSTVLTPTLKDPTRKHIKLEDSIVSHSVSSNRESCFL 237
Query: 179 EFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYK 237
EFDGASKGNPGQAGAGAVLRA DGSV RLREG+GIATNNVAEYRA++LGLK AL+KG+
Sbjct: 238 EFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKSALKKGFT 297
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
I VQGDSKLVCMQ+QGLWK ++N++ LC E +LK KF SF++NH+LR+LNSEADAQA
Sbjct: 298 RIHVQGDSKLVCMQVQGLWKAKHENMSELCNEVTKLKNKFLSFEVNHVLRHLNSEADAQA 357
Query: 298 NMGIYLKDGQVE 309
N+ + L +G+V+
Sbjct: 358 NLALTLAEGEVQ 369
>gi|242081781|ref|XP_002445659.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
gi|241942009|gb|EES15154.1| hypothetical protein SORBIDRAFT_07g023590 [Sorghum bicolor]
Length = 268
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 160/314 (50%), Positives = 198/314 (63%), Gaps = 59/314 (18%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
+ FYVVRKGDV+GIYKTLS+CQ Q G SVRDPS+TV+KGY L KE EEYLA+ GL+++ Y
Sbjct: 8 EPFYVVRKGDVIGIYKTLSECQAQVGNSVRDPSVTVFKGYSLRKETEEYLAARGLRNALY 67
Query: 66 SVSASDVKSDLFGKIVPCPLQEP---ASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++ A+D + +LF +VPCP Q+P ASS K E I K
Sbjct: 68 AIDAADARDELFDDLVPCPFQQPDGAASSTLKRPHE-----------------IETGPSK 110
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+H D Q +P+ SHL SC LEFDG
Sbjct: 111 KHPKVDE----QELPD-----------------SHL----------------SCILEFDG 133
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG+AGAGA++R DGSV +LREG+GIATNN AEYRALILGL YA +KG+K+IR
Sbjct: 134 ASKGNPGKAGAGAIIRRIDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRA 193
Query: 242 QGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
QGDSKLVC Q+Q LW++ N+N+AGLCK+ K LK F FQI H+LR NS ADAQAN +
Sbjct: 194 QGDSKLVCNQVQDLWRVKNENMAGLCKKVKVLKGTFHLFQIRHVLREYNSAADAQANFAV 253
Query: 302 YLKDGQVEAECSSF 315
L G+V+ E S+F
Sbjct: 254 ELPVGEVQ-EQSNF 266
>gi|194700066|gb|ACF84117.1| unknown [Zea mays]
gi|219887863|gb|ACL54306.1| unknown [Zea mays]
gi|413921720|gb|AFW61652.1| putative rnase H family protein isoform 1 [Zea mays]
gi|413921721|gb|AFW61653.1| putative rnase H family protein isoform 2 [Zea mays]
Length = 269
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 196/314 (62%), Gaps = 58/314 (18%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
+ FYVVRKGDV+GIYKTLS+CQ Q SVRDPS+TV+KGY L K+ EEYLA+ GL+++ Y
Sbjct: 8 EPFYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALY 67
Query: 66 SVSASDVKSDLFGKIVPCPLQEP---ASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++ A+D + +LF +VPCP Q+P ASS K S E I I K
Sbjct: 68 AIDATDARDELFDDLVPCPFQQPDGAASSTLKRSQE-----------------IEIGPSK 110
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+H D + VP +P + SC LEFDG
Sbjct: 111 KHPKVD-----EQVP-------------------------------LPDSHLSCILEFDG 134
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG+AGAGA++R DGSV +LREG+GIATNN AEYRALILGL YA +KG+K+IR
Sbjct: 135 ASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRA 194
Query: 242 QGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
QGDSKLVC Q+Q +W++ N N+A CK+ KELK F FQI H+LR NS ADAQAN +
Sbjct: 195 QGDSKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAV 254
Query: 302 YLKDGQVEAECSSF 315
L G+V+ E S+F
Sbjct: 255 ELPVGEVQ-EQSNF 267
>gi|195627916|gb|ACG35788.1| retrotransposon protein Ty3-gypsy subclass [Zea mays]
gi|238009648|gb|ACR35859.1| unknown [Zea mays]
gi|413921724|gb|AFW61656.1| putative rnase H family protein [Zea mays]
Length = 336
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 156/314 (49%), Positives = 196/314 (62%), Gaps = 58/314 (18%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
+ FYVVRKGDV+GIYKTLS+CQ Q SVRDPS+TV+KGY L K+ EEYLA+ GL+++ Y
Sbjct: 75 EPFYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALY 134
Query: 66 SVSASDVKSDLFGKIVPCPLQEP---ASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++ A+D + +LF +VPCP Q+P ASS K S E I I K
Sbjct: 135 AIDATDARDELFDDLVPCPFQQPDGAASSTLKRSQE-----------------IEIGPSK 177
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+H D + VP +P + SC LEFDG
Sbjct: 178 KHPKVD-----EQVP-------------------------------LPDSHLSCILEFDG 201
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG+AGAGA++R DGSV +LREG+GIATNN AEYRALILGL YA +KG+K+IR
Sbjct: 202 ASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRA 261
Query: 242 QGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
QGDSKLVC Q+Q +W++ N N+A CK+ KELK F FQI H+LR NS ADAQAN +
Sbjct: 262 QGDSKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAV 321
Query: 302 YLKDGQVEAECSSF 315
L G+V+ E S+F
Sbjct: 322 ELPVGEVQ-EQSNF 334
>gi|334182806|ref|NP_173819.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332192355|gb|AEE30476.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 353
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/310 (49%), Positives = 207/310 (66%), Gaps = 36/310 (11%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
++ EKDAF+VVRKGDV+GIYK LSDCQ Q G SV D ++VYKGY L K+ EEYL+S GL
Sbjct: 77 VDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGL 136
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K YS+ ASD+K D+FG + PC QEPA KVS++ + T
Sbjct: 137 KKPLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVSED----------------ETTSET 180
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
+ + +D +P + S S+ + S + + ++ ++ C +EF
Sbjct: 181 KSKDDKKDQ------LP------SASISYDPLEKLSKVEPSAYISDET-------CFIEF 221
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG +GA AVL+ EDGS + R+R+G+GIATNN AEY ALILGLKYA++KGYK+I
Sbjct: 222 DGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNI 281
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+V+GDSKLVCMQI+G WK+N++ LA L KEAK L K SF+I+H+LRNLN++AD QAN+
Sbjct: 282 KVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANL 341
Query: 300 GIYLKDGQVE 309
+ L +G+VE
Sbjct: 342 AVRLPEGEVE 351
>gi|224102015|ref|XP_002312512.1| predicted protein [Populus trichocarpa]
gi|222852332|gb|EEE89879.1| predicted protein [Populus trichocarpa]
Length = 317
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/321 (49%), Positives = 217/321 (67%), Gaps = 16/321 (4%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M+ EKDAF+VVRKG VVG+YK +DC+ Q G S+ DP ++VYK Y LSK++E YL SHGL
Sbjct: 1 MDHEKDAFFVVRKGGVVGVYKNFADCEAQLGTSILDPPVSVYKSYSLSKDSEAYLVSHGL 60
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAA------GST 114
+++ Y++ A+D+K DLFG ++PCP Q+PASS + + K +E+ + GS
Sbjct: 61 QNALYTIRAADLKEDLFGTLIPCPFQQPASSNAETCPNDANKKSSQEILGSEIKGIDGSA 120
Query: 115 SISINTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQS---VPY 171
SI+ ++H D Q+ N V + + +L C++ + Y
Sbjct: 121 SIT----RKHTKLDIQAECQAQSSNSVRGCKTMDDQLVKTSKYLFL--CIHGAKKTLIFY 174
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKY 230
+ SC LEFDGASKGNPGQAGAGAVLR +DGS + RLREG+GIATNN+AEYRA++LG+KY
Sbjct: 175 SQKSCLLEFDGASKGNPGQAGAGAVLRNDDGSLICRLREGLGIATNNMAEYRAILLGMKY 234
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+KGY I V+GDSKLVCMQI+G WK ++N+ L +EAK+LK F SF I+H+ R N
Sbjct: 235 ALEKGYTKIHVKGDSKLVCMQIEGSWKARHENITNLYEEAKKLKNSFLSFHISHVPREYN 294
Query: 291 SEADAQANMGIYLKDGQVEAE 311
SEAD+QAN+ I L DG+V+ E
Sbjct: 295 SEADSQANLAIKLADGEVQEE 315
>gi|413921723|gb|AFW61655.1| putative rnase H family protein [Zea mays]
Length = 262
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 189/311 (60%), Gaps = 59/311 (18%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
+ FYVVRKGDV+GIYKTLS+CQ Q SVRDPS+TV+KGY L K+ EEYLA+ GL+++ Y
Sbjct: 8 EPFYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALY 67
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
++ A+D + +LF +VPCP Q+P + +T KR
Sbjct: 68 AIDATDARDELFDDLVPCPFQQPDGAAS-------------------------STLKR-- 100
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
S I + H D L SC LEFDGASK
Sbjct: 101 --------------------SQEIEIGPSKKHPKVDEQL----------SCILEFDGASK 130
Query: 186 GNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG+AGAGA++R DGSV +LREG+GIATNN AEYRALILGL YA +KG+K+IR QGD
Sbjct: 131 GNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGD 190
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q +W++ N N+A CK+ KELK F FQI H+LR NS ADAQAN + L
Sbjct: 191 SKLVCNQVQDIWRVKNDNMASFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELP 250
Query: 305 DGQVEAECSSF 315
G+V+ E S+F
Sbjct: 251 VGEVQ-EQSNF 260
>gi|357144247|ref|XP_003573224.1| PREDICTED: uncharacterized protein LOC100841248 [Brachypodium
distachyon]
Length = 352
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 194/311 (62%), Gaps = 52/311 (16%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
D FYVVRKGDV+GIYK L+DCQ Q SV DP +TVYKGY L KE EE+LA+ GLK + Y
Sbjct: 91 DPFYVVRKGDVIGIYKNLADCQAQVSNSVCDPPVTVYKGYSLRKETEEHLAARGLKHAMY 150
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
S++++D + +LF +VPCP Q+P + S + P+ + K+H
Sbjct: 151 SINSADARDELFDDLVPCPFQQPDGT---ASSTLKRPQ-----------EMETGPSKKH- 195
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
+ +P+N++ SC LEFDGA K
Sbjct: 196 --PKVAEQEPLPDNHL---------------------------------SCILEFDGACK 220
Query: 186 GNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG++GAG V+R DGSV LREG+GIATNN AEYRAL+LGL+YA +KG+K+IR QGD
Sbjct: 221 GNPGKSGAGVVVRRPDGSVIAHLREGLGIATNNAAEYRALLLGLRYAAKKGFKYIRAQGD 280
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q LW++ N N+A LCK+ KELK +F SFQ+NH+LR N++ADAQAN + L
Sbjct: 281 SKLVCYQVQDLWRVKNDNMADLCKKVKELKGQFLSFQLNHVLREFNADADAQANFAVELP 340
Query: 305 DGQVEAECSSF 315
G+++ E S+F
Sbjct: 341 VGEIQ-EQSNF 350
>gi|357123204|ref|XP_003563302.1| PREDICTED: uncharacterized protein LOC100831320 [Brachypodium
distachyon]
Length = 349
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 192/312 (61%), Gaps = 52/312 (16%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
D FYVVRKGDV+GIYK L+DCQ Q SV DP +TVYKGY L KE EEYLA+ GLK + Y
Sbjct: 88 DPFYVVRKGDVIGIYKNLADCQAQVSNSVCDPPVTVYKGYSLRKETEEYLAARGLKHALY 147
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
S++A+D + +LF +VPCP Q+P G+T+ ++ +
Sbjct: 148 SINAADARDELFDDLVPCPFQQPD----------------------GTTTSTLKRPQEME 185
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
E P+ + A + +P + SC LEFDGA K
Sbjct: 186 TEQ--------PKKHPKGA--------------------EQEPLPNSHLSCILEFDGACK 217
Query: 186 GNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG++GAG V+R DGSV +LREG+GIATNN AEYRAL+LGL+YA KG+K+IR QGD
Sbjct: 218 GNPGKSGAGVVVRRPDGSVIAQLREGLGIATNNAAEYRALLLGLRYAANKGFKYIRAQGD 277
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q +W+ N N+A LCK+ KELK +F FQ+NH+LR N++ADAQAN + L
Sbjct: 278 SKLVCNQVQNVWRARNDNMADLCKKVKELKGRFLVFQVNHVLREFNADADAQANFAVELP 337
Query: 305 DGQVEAECSSFT 316
G+++ E S+F
Sbjct: 338 AGEIQ-EQSNFP 348
>gi|326488477|dbj|BAJ93907.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 148/311 (47%), Positives = 194/311 (62%), Gaps = 54/311 (17%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
D FYVVRKGDV+GIY L+DCQ Q SV DPS+TVYKGY L K+ EEYLA+ GLK++ Y
Sbjct: 7 DPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYLAARGLKNAPY 66
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
S++A+D K +LF + PCP Q+P D S K +E+ ST +H
Sbjct: 67 SINAADAKDELFDDLAPCPFQQP--------DGTSTLKRPQEMETGPST--------KH- 109
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
+ +P+ SHL SC LEFDGA K
Sbjct: 110 --PKVAEQEPLPD-----------------SHL----------------SCILEFDGACK 134
Query: 186 GNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG++GAG V+R DG+ + +LREG+GIATNN AEYRAL+LGL+YA +KG+K++R QGD
Sbjct: 135 GNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGD 194
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+LR N++ADAQAN + L
Sbjct: 195 SKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHVLREFNADADAQANFAVELP 254
Query: 305 DGQVEAECSSF 315
G+++ E S+F
Sbjct: 255 VGEIQ-EQSNF 264
>gi|297845448|ref|XP_002890605.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297336447|gb|EFH66864.1| RNase H domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 536
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 199/306 (65%), Gaps = 39/306 (12%)
Query: 2 EDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLK 61
+ EK AF+VVRKGDV+GIYK LSDCQ Q G SV D ++VYKGY L K+ EEYL++ GLK
Sbjct: 79 DKEKYAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSAVGLK 138
Query: 62 SSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQ 121
YS+ ASD+K D+FG + PC QEPAS KVS+E A S + S + Q
Sbjct: 139 KPLYSLRASDLKDDMFGALTPCLFQEPASCTVKVSEE-----------EATSETKSKDNQ 187
Query: 122 KRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFD 181
K + S S+ + + L QS + +C +EFD
Sbjct: 188 KDQL-----------------PSASMSYDPLEKLAKLE-------QSADTSDETCFIEFD 223
Query: 182 GASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
GASKGNPG +GA AVL+ EDGS + RLR+G+GIATNN AEY ALILGLKYA++KGYK I+
Sbjct: 224 GASKGNPGLSGAAAVLKTEDGSLICRLRQGLGIATNNAAEYHALILGLKYAIEKGYKKIK 283
Query: 241 VQGDSKLVCM---QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
V+GDSKLVCM QI+G WK+N++ LA L KEAK+L K SF+I+H+LRNLN++AD QA
Sbjct: 284 VKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKQLCNKCVSFEISHVLRNLNADADEQA 343
Query: 298 NMGIYL 303
N+ + L
Sbjct: 344 NLAVRL 349
>gi|326505852|dbj|BAJ91165.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/311 (47%), Positives = 194/311 (62%), Gaps = 54/311 (17%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
D FYVVRKGDV+GIY L+DCQ Q SV DPS+TVYKGY L K+ EEYLA+ GLK++ Y
Sbjct: 7 DPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYLAARGLKNALY 66
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
S++A+D K +LF + PCP Q+P D S K +E+ ST +H
Sbjct: 67 SINAADAKDELFDDLAPCPFQQP--------DGTSTLKRPQEMETGPST--------KH- 109
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
+ +P+ SHL SC LEFDGA K
Sbjct: 110 --PKVAEQEPLPD-----------------SHL----------------SCILEFDGACK 134
Query: 186 GNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG++GAG V+R DG+ + +LREG+GIATNN AEYRAL+LGL+YA +KG+K++R QGD
Sbjct: 135 GNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGD 194
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+LR N++ADAQAN + L
Sbjct: 195 SKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHVLREFNADADAQANFAVELP 254
Query: 305 DGQVEAECSSF 315
G+++ E S+F
Sbjct: 255 VGEIQ-EQSNF 264
>gi|326499834|dbj|BAJ90752.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 192/311 (61%), Gaps = 54/311 (17%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
D FYVVRKGDV+GIY L+DCQ Q SV DPS+TVYKGY L K+ EEYLA+ GLK++ Y
Sbjct: 88 DPFYVVRKGDVIGIYNNLADCQAQVSNSVCDPSVTVYKGYSLRKDTEEYLAARGLKNALY 147
Query: 66 SVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHF 125
S++A+D K +LF + PCP Q+P D S K +E+ ST
Sbjct: 148 SINAADAKDELFDDLAPCPFQQP--------DGTSTLKRPQEMETGPST----------- 188
Query: 126 NEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASK 185
+ +P+ SHL SC LEFDGA K
Sbjct: 189 KHPKVAEQEPLPD-----------------SHL----------------SCILEFDGACK 215
Query: 186 GNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGD 244
GNPG++GAG V+R DG+ + +LREG+GIATNN AEYRAL+LGL+YA +KG+K++R QGD
Sbjct: 216 GNPGKSGAGVVVRRSDGAMIAQLREGLGIATNNAAEYRALLLGLRYAAKKGFKYVRAQGD 275
Query: 245 SKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304
SKLVC Q+Q LW++ N N+A LCK+ K+LK F FQINH+LR N++ADAQAN + L
Sbjct: 276 SKLVCNQVQDLWRVRNDNMADLCKKVKDLKGSFLQFQINHVLREFNADADAQANFAVELP 335
Query: 305 DGQVEAECSSF 315
G+++ E S+F
Sbjct: 336 VGEIQ-EQSNF 345
>gi|226532456|ref|NP_001145250.1| uncharacterized protein LOC100278534 [Zea mays]
gi|195653679|gb|ACG46307.1| hypothetical protein [Zea mays]
Length = 276
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/310 (47%), Positives = 190/310 (61%), Gaps = 50/310 (16%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
++ ++ FYV+RKGDV+G+YK LSDCQ QA SV PS+TVYKGY L KE EEYLA+ GL
Sbjct: 12 IDSSREPFYVIRKGDVIGVYKNLSDCQAQASKSVLHPSVTVYKGYSLRKETEEYLAARGL 71
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ YS+ A+D +LFG +VPCP Q+P DE
Sbjct: 72 RNAVYSIGAADASDELFGDLVPCPFQQP--------DE---------------------- 101
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
NTQS+ + T S + + + L + +P + SC LEF
Sbjct: 102 -----------NTQSILKMSQGQEMETRSSEHPKVADL--------EPLPDSELSCILEF 142
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA KGNPG++GAG ++R DGSV LREG+GI TNN AEYRALILGL YA +KG+K+I
Sbjct: 143 DGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 202
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R QGDSKLVC Q+QG W+ + N++ LC AKELKE F +FQINH+LR NS+AD QAN
Sbjct: 203 RCQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQINHVLREFNSDADVQANF 262
Query: 300 GIYLKDGQVE 309
G L +V+
Sbjct: 263 GCQLAVDEVQ 272
>gi|38636806|dbj|BAD03047.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|38636983|dbj|BAD03243.1| putative RNase H domain-containing protein [Oryza sativa Japonica
Group]
gi|125560347|gb|EAZ05795.1| hypothetical protein OsI_28030 [Oryza sativa Indica Group]
gi|125602385|gb|EAZ41710.1| hypothetical protein OsJ_26246 [Oryza sativa Japonica Group]
Length = 351
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/311 (46%), Positives = 189/311 (60%), Gaps = 53/311 (17%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
D + FYVVRKGDV+GIYK+LSDCQ Q SV DPS+TVYKGY L KE EEYLA+ GL++
Sbjct: 83 DGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARGLRN 142
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
YS++A+D + +LF +VPCP Q+P +G +T K
Sbjct: 143 PLYSINAADARDELFDDLVPCPFQQPDGTG-------------------------TSTLK 177
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNAD-SCLNTQSVPYNCYSCTLEFD 181
R P ++ Q N+ SCL LEFD
Sbjct: 178 R-------------PLEMETGPSKKQPKVSEQEPLPNSSLSCL-------------LEFD 211
Query: 182 GASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
GASKGNPG+AGAGAV+R DG+V +LREG+GIATNN AEYRALILGL YA +KG+K+IR
Sbjct: 212 GASKGNPGKAGAGAVIRRLDGTVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIR 271
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
QGDSKLVC Q+ +W+ + +A LCK KE+K +F +FQINH+LR N++ADAQAN+
Sbjct: 272 AQGDSKLVCNQVSDVWRARHDTMADLCKRVKEIKGRFHTFQINHVLREFNTDADAQANLA 331
Query: 301 IYLKDGQVEAE 311
+ L ++ +E
Sbjct: 332 VELPGEKLLSE 342
>gi|223949765|gb|ACN28966.1| unknown [Zea mays]
gi|413942425|gb|AFW75074.1| putative rnase H family protein [Zea mays]
Length = 331
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/310 (46%), Positives = 188/310 (60%), Gaps = 50/310 (16%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
++ ++ FYV+RKGDV+G+YK LSDCQ QA SV PS+TVYKGY L KE EEYLA+ G
Sbjct: 67 IDSSREPFYVIRKGDVIGVYKNLSDCQAQASKSVLHPSVTVYKGYSLRKETEEYLAARGF 126
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ S+ A+D +LFG +VPCP Q+P DE
Sbjct: 127 RNAVCSIGAADASDELFGDLVPCPFQQP--------DE---------------------- 156
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
NTQS+ + T S + + + L + +P + SC LEF
Sbjct: 157 -----------NTQSILKMSQGQEMETRSSEHPKVADL--------EPLPDSELSCILEF 197
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA KGNPG++GAG ++R DGSV LREG+GI TNN AEYRALILGL YA +KG+K+I
Sbjct: 198 DGACKGNPGKSGAGVIIRRLDGSVIAVLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 257
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R QGDSKLVC Q+QG W+ + N++ LC AKELKE F +FQINH+LR NS+AD QAN
Sbjct: 258 RCQGDSKLVCNQVQGAWRARSDNMSILCDIAKELKETFLTFQINHVLREFNSDADVQANF 317
Query: 300 GIYLKDGQVE 309
G L +V+
Sbjct: 318 GCQLAVDEVQ 327
>gi|9369399|gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 154/326 (47%), Positives = 200/326 (61%), Gaps = 67/326 (20%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
++ EKDAF+VVRKGDV+GIYK LSDCQ Q G SV D ++VYKGY L K+ EEYL+S GL
Sbjct: 77 VDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGL 136
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
K YS+ ASD+K D+FG + PC QEPA KVS++ +TS T
Sbjct: 137 KKPLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVSED-------------ETTS---ET 180
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
+ + +D +P S S S + L+ ++C +EF
Sbjct: 181 KSKDDKKDQ------LP--------SASISYDPLE-KLSKETCF-------------IEF 212
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG +GA AVL+ EDGS + R+R+G+GIATNN AEY ALILGLKYA++KGYK+I
Sbjct: 213 DGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKNI 272
Query: 240 RVQGDSKLVCM----------------------QIQGLWKINNQNLAGLCKEAKELKEKF 277
+V+GDSKLVCM QI+G WK+N++ LA L KEAK L K
Sbjct: 273 KVKGDSKLVCMQVSLMNHIRFYLLTFSTLSEKQQIKGQWKVNHEVLAKLHKEAKLLCNKC 332
Query: 278 QSFQINHILRNLNSEADAQANMGIYL 303
SF+I+H+LRNLN++AD QAN+ + L
Sbjct: 333 VSFEISHVLRNLNADADEQANLAVRL 358
>gi|326490670|dbj|BAJ90002.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 202/323 (62%), Gaps = 16/323 (4%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+ D +YVVRKGD+V +Y++L+DCQ Q SV P+ + YKGY SKE EY +SHGL
Sbjct: 1 MEEGSD-YYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAEYFSSHGL 59
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQE--PASSGEKVSDEVSLPKMLR-EVAAAGSTSIS 117
++SY++SA++++ DL G +VPC QE +SS ++ + ++ +R +
Sbjct: 60 SNASYTISAAELREDLLGALVPCTFQEITASSSNQRAPNMSAIGSDIRYQPGIHNDIKYE 119
Query: 118 INTQK--RHFNEDNCWNTQSVPENYVAAAG------STSFSINTQRSHLNADSCLNTQSV 169
TQ H++ Q + A +G S+S+S ++LN + Q V
Sbjct: 120 PGTQPVDLHYSATGSGQAQGYSDQAHAFSGLEAKPRSSSYS---SPNNLNHTGAFDAQPV 176
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGL 228
C + FDGASKGNPG++GAGAVL EDG V RLREG+G+ATNNVAEYR LILGL
Sbjct: 177 SKQYMVCVVHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGL 236
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
KYA++ G+K I+V GDS+LVC Q++G W+ +N+ LCKE ++L+E F SF+++H+ R
Sbjct: 237 KYAIRLGFKRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRRE 296
Query: 289 LNSEADAQANMGIYLKDGQVEAE 311
NSEAD QAN+ I L G V E
Sbjct: 297 WNSEADRQANIAITLASGAVSEE 319
>gi|218184677|gb|EEC67104.1| hypothetical protein OsI_33899 [Oryza sativa Indica Group]
Length = 323
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 193/326 (59%), Gaps = 25/326 (7%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +Y+VRKG++V +YK+L+DCQ Q SV P+ + YKG S+E EEYL+S GL +
Sbjct: 2 EEGSNYYLVRKGEMVAVYKSLTDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++Y ++A++++ DLFG ++PC QE S S L +T Q
Sbjct: 62 ATYVINAAELREDLFGTLIPCTFQEITVSSSNQS-------ALNHTGVLNNTRYQPGAQS 114
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQR----------------SHLNADSCLNT 166
N D + Q+ E+Y + +S+ Q ++L+ ++
Sbjct: 115 VDLNYDAVGSGQASAEHYSQRI-NQGYSVRGQAFNRLESRPSSSSHFSPNNLDQSGTVDA 173
Query: 167 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALI 225
Q + C L FDGASKGNPG+AGAGAVL EDG V RLREG+GI TNNVAEYR LI
Sbjct: 174 QPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLI 233
Query: 226 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
LGL+YA++ G+K I V GDS+LVC Q++G W+ NQN+ LCKE ++LKE F SF+INHI
Sbjct: 234 LGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHI 293
Query: 286 LRNLNSEADAQANMGIYLKDGQVEAE 311
R N+EAD QAN+ I L G V E
Sbjct: 294 RREWNAEADRQANIAITLSSGVVSEE 319
>gi|115482348|ref|NP_001064767.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|78708782|gb|ABB47757.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
gi|113639376|dbj|BAF26681.1| Os10g0458700 [Oryza sativa Japonica Group]
gi|222612954|gb|EEE51086.1| hypothetical protein OsJ_31786 [Oryza sativa Japonica Group]
Length = 323
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 193/326 (59%), Gaps = 25/326 (7%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +Y+VRKG++V +YK+L+DCQ Q SV P+ + YKG S+E EEYL+S GL +
Sbjct: 2 EEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++Y ++A++++ DLFG ++PC QE S S L +T Q
Sbjct: 62 ATYVINAAELREDLFGTLIPCTFQEITVSSSNQS-------ALNHTGVLNNTRYQPGAQS 114
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQR----------------SHLNADSCLNT 166
N D + Q+ E+Y + +S+ Q ++L+ ++
Sbjct: 115 VDLNYDAVGSGQASAEHYSQRI-NQGYSVRGQAFNRLESRPSSSSHFSPNNLDQSGTVDA 173
Query: 167 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALI 225
Q + C L FDGASKGNPG+AGAGAVL EDG V RLREG+GI TNNVAEYR LI
Sbjct: 174 QPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLI 233
Query: 226 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
LGL+YA++ G+K I V GDS+LVC Q++G W+ NQN+ LCKE ++LKE F SF+INHI
Sbjct: 234 LGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHI 293
Query: 286 LRNLNSEADAQANMGIYLKDGQVEAE 311
R N+EAD QAN+ I L G V E
Sbjct: 294 RREWNAEADRQANIAITLSSGVVSEE 319
>gi|212275993|ref|NP_001130760.1| uncharacterized protein LOC100191864 [Zea mays]
gi|194690044|gb|ACF79106.1| unknown [Zea mays]
Length = 292
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 192/314 (61%), Gaps = 29/314 (9%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+ D +YVVRKGDVV +YKTLSDCQ Q SV P+ + YKG+ S+ EEYL+S GL
Sbjct: 1 MEEGND-YYVVRKGDVVAVYKTLSDCQGQICSSVSGPAASAYKGHSWSRGKEEYLSSRGL 59
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQE--PASSGEKVSDEVSLPKMLREVAAAGSTSISI 118
++Y ++A++++ D+ G +VPC Q+ +SS + + + ++ + G+ + +
Sbjct: 60 SDATYVINAAELREDILGPLVPCSFQDILGSSSNQLAPNHIGFHNVI--ASQTGAQYVDL 117
Query: 119 NTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTL 178
N + R +S S + ++ N ++ Q + L
Sbjct: 118 NHEAR-----------------------SSSSRHISPANFNHTGTVDAQPISKQYMVGIL 154
Query: 179 EFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYK 237
FDGASKGNPG+AGAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+K
Sbjct: 155 HFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGFK 214
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
I+V GDS+LVC Q+ G+W+ N+ LC EA++LKE F SF+I H+ R N+EAD QA
Sbjct: 215 RIKVHGDSQLVCNQVNGVWQTKQPNMMELCTEARKLKENFHSFEIIHVRREWNAEADRQA 274
Query: 298 NMGIYLKDGQVEAE 311
N+GI L G V E
Sbjct: 275 NIGITLASGAVFEE 288
>gi|326494200|dbj|BAJ90369.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/312 (44%), Positives = 191/312 (61%), Gaps = 38/312 (12%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+ D +YVVRKGD+V +Y++L+DCQ Q SV P+ + YKGY SKE EY +SHGL
Sbjct: 1 MEEGSD-YYVVRKGDMVAVYRSLNDCQAQICSSVSGPAASAYKGYCWSKEKAEYFSSHGL 59
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
++SY++SA++++ DL G +VPC Q SG+ + +
Sbjct: 60 SNASYTISAAELREDLLGALVPCTFQSATGSGQ---------------------AQGYSD 98
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
Q F+ ++ P S+S+S ++LN + Q V C + F
Sbjct: 99 QAHAFS-----GLEAKPR-------SSSYS---SPNNLNHTGAFDAQPVSKQYMVCVVHF 143
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG++GAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+K I
Sbjct: 144 DGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRLGFKRI 203
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+V GDS+LVC Q++G W+ +N+ LCKE ++L+E F SF+++H+ R NSEAD QAN+
Sbjct: 204 KVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVHHVRREWNSEADRQANI 263
Query: 300 GIYLKDGQVEAE 311
I L G V E
Sbjct: 264 AITLASGAVSEE 275
>gi|194699332|gb|ACF83750.1| unknown [Zea mays]
Length = 292
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 192/314 (61%), Gaps = 29/314 (9%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME+ D ++VVRKGDVV +YKTLSDCQ Q SV P+ + YKG+ S+ EEYL+S GL
Sbjct: 1 MEEGND-YHVVRKGDVVAVYKTLSDCQGQICSSVSGPAASAYKGHSWSRGKEEYLSSRGL 59
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQE--PASSGEKVSDEVSLPKMLREVAAAGSTSISI 118
++Y ++A++++ D+ G +VPC Q+ +SS + + + ++ + G+ + +
Sbjct: 60 SDATYVINAAELREDILGPLVPCSFQDILGSSSNQLAPNHIGFHNVI--ASQTGAQYVDL 117
Query: 119 NTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTL 178
N + R +S S + ++ N ++ Q + L
Sbjct: 118 NHEAR-----------------------SSSSRHISPANFNHTGTVDAQPISKQYMVGIL 154
Query: 179 EFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYK 237
FDGASKGNPG+AGAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+K
Sbjct: 155 HFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGFK 214
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
I+V GDS+LVC Q+ G+W+ N+ LC EA++LKE F SF+I H+ R N+EAD QA
Sbjct: 215 RIKVHGDSQLVCNQVNGVWQTKQPNMMELCTEARKLKENFHSFEIIHVRREWNAEADRQA 274
Query: 298 NMGIYLKDGQVEAE 311
N+GI L G V E
Sbjct: 275 NIGITLASGAVFEE 288
>gi|357146480|ref|XP_003574007.1| PREDICTED: uncharacterized protein LOC100824410 isoform 1
[Brachypodium distachyon]
Length = 319
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 202/315 (64%), Gaps = 8/315 (2%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +YVV+KG+ V +YKTL+DCQ Q SV P+ + YKG+ SKE EYL+S GL +
Sbjct: 2 EEGSNYYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGLIN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQE---PASSGEKVSDEVSL-PKMLREVA-AAGSTSIS 117
+SY++SA++++ DL G +VPC QE P+S+ + +++ P + ++ +G +
Sbjct: 62 ASYAISAAELREDLLGALVPCTFQEITGPSSNLTGICNDIGYQPGIHNDIRYQSGEQLVD 121
Query: 118 INTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCT 177
+N + ++ Q + + A +S ++ ++++ ++ Q V C
Sbjct: 122 LNYNASGSGQSQGYSDQEQAFSRLEARPMSSSHLSP--NNISYSGAVDAQPVSKQYMVCV 179
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGY 236
+ FDGASKGNPG++GAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+
Sbjct: 180 IHFDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGF 239
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K I+V GDS+LVC Q++G W+ +N+ LCKE ++L+E F SF++NH+ R N+EAD Q
Sbjct: 240 KRIKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVNHVRREWNAEADRQ 299
Query: 297 ANMGIYLKDGQVEAE 311
AN+ + L G V E
Sbjct: 300 ANIALTLASGAVSEE 314
>gi|14140290|gb|AAK54296.1|AC034258_14 putative RNase [Oryza sativa Japonica Group]
Length = 289
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 137/310 (44%), Positives = 190/310 (61%), Gaps = 27/310 (8%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +Y+VRKG++V +YK+L+DCQ Q SV P+ + YKG S+E EEYL+S GL +
Sbjct: 2 EEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++Y ++A++++ DLFG ++PC Q+ SG+ ++ S
Sbjct: 62 ATYVINAAELREDLFGTLIPCTFQDAVGSGQASAEHYS---------------------- 99
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+ N+ Q+ + S+ FS N +L+ ++ Q + C L FDG
Sbjct: 100 QRINQGYSVRGQAFNRLESRPSSSSHFSPN----NLDQSGTVDAQPLSKQYMVCLLHFDG 155
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG+AGAGAVL EDG V RLREG+GI TNNVAEYR LILGL+YA++ G+K I V
Sbjct: 156 ASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIRHGFKKIIV 215
Query: 242 QGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
GDS+LVC Q++G W+ NQN+ LCKE ++LKE F SF+INHI R N+EAD QAN+ I
Sbjct: 216 YGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNAEADRQANIAI 275
Query: 302 YLKDGQVEAE 311
L G V E
Sbjct: 276 TLSSGVVSEE 285
>gi|357146482|ref|XP_003574008.1| PREDICTED: uncharacterized protein LOC100824410 isoform 2
[Brachypodium distachyon]
Length = 298
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/313 (43%), Positives = 197/313 (62%), Gaps = 25/313 (7%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +YVV+KG+ V +YKTL+DCQ Q SV P+ + YKG+ SKE EYL+S GL +
Sbjct: 2 EEGSNYYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGLIN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQE---PASSGEKVSDEVSLPKMLREVAAAGSTSISIN 119
+SY++SA++++ DL G +VPC QE P+S+ + +++ I+
Sbjct: 62 ASYAISAAELREDLLGALVPCTFQEITGPSSNLTGICNDIGYQP-------------GIH 108
Query: 120 TQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLE 179
R+ + + Q V NY A S+S + ++++ ++ Q V C +
Sbjct: 109 NDIRYQSGE-----QLVDLNYEARPMSSS---HLSPNNISYSGAVDAQPVSKQYMVCVIH 160
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG++GAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+K
Sbjct: 161 FDGASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKR 220
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I+V GDS+LVC Q++G W+ +N+ LCKE ++L+E F SF++NH+ R N+EAD QAN
Sbjct: 221 IKVYGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVNHVRREWNAEADRQAN 280
Query: 299 MGIYLKDGQVEAE 311
+ + L G V E
Sbjct: 281 IALTLASGAVSEE 293
>gi|357146485|ref|XP_003574009.1| PREDICTED: uncharacterized protein LOC100824410 isoform 3
[Brachypodium distachyon]
Length = 280
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/310 (42%), Positives = 191/310 (61%), Gaps = 37/310 (11%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
+E +YVV+KG+ V +YKTL+DCQ Q SV P+ + YKG+ SKE EYL+S GL +
Sbjct: 2 EEGSNYYVVKKGETVAVYKTLNDCQAQICSSVSGPAASAYKGHCWSKEKAEYLSSRGLIN 61
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
+SY++SA++++ DL G +VPC Q + SG+ S + Q+
Sbjct: 62 ASYAISAAELREDLLGALVPCTFQNASGSGQ---------------------SQGYSDQE 100
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+ F+ ++ P + S+ S N +++ ++ Q V C + FDG
Sbjct: 101 QAFSR-----LEARPMS------SSHLSPN----NISYSGAVDAQPVSKQYMVCVIHFDG 145
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG++GAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+K I+V
Sbjct: 146 ASKGNPGKSGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIKHGFKRIKV 205
Query: 242 QGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
GDS+LVC Q++G W+ +N+ LCKE ++L+E F SF++NH+ R N+EAD QAN+ +
Sbjct: 206 YGDSQLVCYQVKGTWQAKKENMMELCKEVRKLQENFISFEVNHVRREWNAEADRQANIAL 265
Query: 302 YLKDGQVEAE 311
L G V E
Sbjct: 266 TLASGAVSEE 275
>gi|242089145|ref|XP_002440405.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
gi|241945690|gb|EES18835.1| hypothetical protein SORBIDRAFT_09g000480 [Sorghum bicolor]
Length = 341
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/310 (45%), Positives = 180/310 (58%), Gaps = 50/310 (16%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
M ++ FYV+RKGDV+GI KTLSDCQ Q SV DP +TVYKGY L KE EEYLA+ GL
Sbjct: 76 MYSSREPFYVIRKGDVIGICKTLSDCQAQVSNSVCDPPVTVYKGYSLRKETEEYLAARGL 135
Query: 61 KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINT 120
+++ YS+ A+D + E D V P + A + +S
Sbjct: 136 RNAVYSIDAADARD------------------ELFGDLVPCPFQQPDEAKQSTLKMSQGM 177
Query: 121 QKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEF 180
K T S + + + L +++P + SC LEF
Sbjct: 178 LK-----------------------ETRLSEHPKAADL--------ETLPDSELSCILEF 206
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA KGNPG++GAG ++R DGSV L REG+GI TNN AEYRALILGL YA +KG+K+I
Sbjct: 207 DGACKGNPGKSGAGVIIRRLDGSVIALLREGLGIMTNNAAEYRALILGLNYASKKGFKYI 266
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R QGDSKLVC Q++G W+ + N+A LC AKELKE F +FQINH+LR NS+AD QAN
Sbjct: 267 RCQGDSKLVCNQVRGDWRARSDNMAVLCDIAKELKETFLTFQINHVLREFNSDADVQANF 326
Query: 300 GIYLKDGQVE 309
G L +V+
Sbjct: 327 GAQLAVDEVQ 336
>gi|387169560|gb|AFJ66219.1| hypothetical protein 34G24.24 [Capsella rubella]
Length = 448
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 181/303 (59%), Gaps = 30/303 (9%)
Query: 2 EDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLK 61
+ +KDAF+VVRKGD+VGI+K LSDC Q G SV D + VYKGY L K+ EEYL G+K
Sbjct: 173 DKDKDAFFVVRKGDIVGIFKDLSDCHPQVGSSVYDLPVNVYKGYLLPKDTEEYLNIVGMK 232
Query: 62 SSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQ 121
YS ASD+K D+FG + PC EP S KVS E P M
Sbjct: 233 KPLYSFRASDLKEDMFGALTPCLFHEPTSCKVKVSKEEDTPVM----------------- 275
Query: 122 KRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFD 181
+ + S S S++ +T +C +EFD
Sbjct: 276 -------KSLDKTKTKDKKTDQLLSASMSVDPLEKLAKLKPSADTSD-----ETCIVEFD 323
Query: 182 GASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
GASKGNPG +GA AVL+ EDGS + ++R+G+GIATNN AEY LILGLK+A+++GY+ I+
Sbjct: 324 GASKGNPGLSGAAAVLKTEDGSFICKMRQGLGIATNNAAEYHGLILGLKHAIERGYRKIK 383
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V+GDSKLV MQ++G WK+N++ L+ L KEAK+L ++ SF+I+ + RNLNS+AD ANM
Sbjct: 384 VKGDSKLVSMQMKGQWKVNHEVLSKLYKEAKQLSDQCVSFEISQVQRNLNSDADELANMA 443
Query: 301 IYL 303
L
Sbjct: 444 ARL 446
>gi|413921722|gb|AFW61654.1| putative rnase H family protein [Zea mays]
Length = 205
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/251 (49%), Positives = 154/251 (61%), Gaps = 57/251 (22%)
Query: 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSY 65
+ FYVVRKGDV+GIYKTLS+CQ Q SVRDPS+TV+KGY L K+ EEYLA+ GL+++ Y
Sbjct: 8 EPFYVVRKGDVIGIYKTLSECQAQVSNSVRDPSVTVFKGYSLRKDTEEYLAARGLRNALY 67
Query: 66 SVSASDVKSDLFGKIVPCPLQEP---ASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
++ A+D + +LF +VPCP Q+P ASS K S E I I K
Sbjct: 68 AIDATDARDELFDDLVPCPFQQPDGAASSTLKRSQE-----------------IEIGPSK 110
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+H D + VP +P + SC LEFDG
Sbjct: 111 KHPKVD-----EQVP-------------------------------LPDSHLSCILEFDG 134
Query: 183 ASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRV 241
ASKGNPG+AGAGA++R DGSV +LREG+GIATNN AEYRALILGL YA +KG+K+IR
Sbjct: 135 ASKGNPGKAGAGAIIRQVDGSVIAQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRA 194
Query: 242 QGDSKLVCMQI 252
QGDSKLVC Q+
Sbjct: 195 QGDSKLVCNQV 205
>gi|171921105|gb|ACB59203.1| RNase H domain-containing protein [Brassica oleracea]
Length = 492
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 177/320 (55%), Gaps = 70/320 (21%)
Query: 2 EDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKG--YGLSKEAEEYLASHG 59
E EKDAF+VVRKGDV+GIYK L+DCQ Q G SV T++ Y L YL G
Sbjct: 47 EKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVN----TIFSPLQYILC-----YLYRMG 97
Query: 60 L-KSSSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISI 118
+ +Y V + EP SS KVS+E + +M
Sbjct: 98 IINRRNYCVILL--------------ILEPTSSKVKVSEEEDISEM-------------- 129
Query: 119 NTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTL 178
+ + D ++ F + S + +D +C +
Sbjct: 130 --KSKDMKHD--------------MPSASVFDQQLKPSAVTSDE------------TCFI 161
Query: 179 EFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
EFDGASKGNPG +GA AVL+ EDGS + ++R+G+GIATNN AEY LILGLK+A+++GYK
Sbjct: 162 EFDGASKGNPGLSGAAAVLKTEDGSLICKVRQGLGIATNNAAEYHGLILGLKHAIERGYK 221
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
I+V+GDSKL+CMQI+G WK+NN+ L+ L +EAK+L + SF+I+H+LRNLNS AD QA
Sbjct: 222 KIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEAKQLTNECISFEISHVLRNLNSAADEQA 281
Query: 298 NMGIYLKDGQVEAECSSFTK 317
N+ + L G VE TK
Sbjct: 282 NLAVRLP-GNVERISRMLTK 300
>gi|388511545|gb|AFK43834.1| unknown [Lotus japonicus]
Length = 170
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/136 (70%), Positives = 115/136 (84%), Gaps = 1/136 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
SC LEFDGAS+GNPG AGAGAVLRA+DGS VYRLREGVGI TNN AEYR LILGLK+A+Q
Sbjct: 27 SCILEFDGASRGNPGPAGAGAVLRAKDGSKVYRLREGVGIQTNNFAEYRGLILGLKHAIQ 86
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+GY+HI V+GDS LVC Q+QG+W+INNQN+A LC E KEL+ +F SF+I+HI R N EA
Sbjct: 87 EGYEHIDVKGDSMLVCNQVQGVWRINNQNMAYLCNEVKELRNRFLSFKISHIPREYNYEA 146
Query: 294 DAQANMGIYLKDGQVE 309
D +AN+G+ L+ GQVE
Sbjct: 147 DVEANLGVNLRAGQVE 162
>gi|388490516|gb|AFK33324.1| unknown [Lotus japonicus]
Length = 167
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 109/138 (78%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
SCTLEFDG+SKGNPG AGAGAVLRAEDGS LREGVG TNN AEYR LILGLK+A ++
Sbjct: 27 SCTLEFDGSSKGNPGSAGAGAVLRAEDGSKVYLREGVGNQTNNQAEYRGLILGLKHAHEQ 86
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
GY+HI V+GDS+LVC Q++G WK N N+A LC EAKELK KFQSF INH+ R NSEAD
Sbjct: 87 GYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEAD 146
Query: 295 AQANMGIYLKDGQVEAEC 312
QAN+G+ L G VE C
Sbjct: 147 VQANLGVNLPAGHVEEYC 164
>gi|449459420|ref|XP_004147444.1| PREDICTED: uncharacterized protein LOC101219107 [Cucumis sativus]
gi|449517156|ref|XP_004165612.1| PREDICTED: uncharacterized LOC101219107 [Cucumis sativus]
Length = 255
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 114/140 (81%), Gaps = 1/140 (0%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYAL 232
Y+ LEFDGASKGNPG AGAGAVLRA DGS V +L+EGVGIAT NVAEYRA+ILGLK+AL
Sbjct: 113 YTYFLEFDGASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHAL 172
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G KHIRVQGDSKLVCMQ+QGLWK+ N N+A CK AKELK+KF SF+I+H R NS+
Sbjct: 173 KNGIKHIRVQGDSKLVCMQVQGLWKLKNPNMAKFCKVAKELKDKFVSFEISHFPRKQNSD 232
Query: 293 ADAQANMGIYLKDGQVEAEC 312
ADA AN I L+DG V +C
Sbjct: 233 ADALANCAIRLQDGVVVEDC 252
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
ME +KDA+YVV KGDV G Y+T + G DP T+YKGY LSKEAEEYL +HGL
Sbjct: 1 MEGDKDAYYVVHKGDVFGFYRTAKELLTHPGRF--DPDATIYKGYHLSKEAEEYLVAHGL 58
Query: 61 KSSSYSVSASDVKSDLFGKIVPC-PLQEPASSGEKVSDEVS 100
+S++YS+SA++V DLFGKI+PC P ++P+++ K+++E S
Sbjct: 59 QSATYSISAANVTKDLFGKILPCFPYEQPSATRGKMAEEYS 99
>gi|226495263|ref|NP_001141955.1| uncharacterized protein LOC100274104 [Zea mays]
gi|194706572|gb|ACF87370.1| unknown [Zea mays]
gi|413921719|gb|AFW61651.1| putative rnase H family protein [Zea mays]
Length = 192
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/171 (56%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
Query: 146 STSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY 205
S I + H D + +P + SC LEFDGASKGNPG+AGAGA++R DGSV
Sbjct: 24 SQEIEIGPSKKHPKVDEQV---PLPDSHLSCILEFDGASKGNPGKAGAGAIIRQVDGSVI 80
Query: 206 -RLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA 264
+LREG+GIATNN AEYRALILGL YA +KG+K+IR QGDSKLVC Q+Q +W++ N N+A
Sbjct: 81 AQLREGLGIATNNAAEYRALILGLTYAAKKGFKYIRAQGDSKLVCNQVQDIWRVKNDNMA 140
Query: 265 GLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSF 315
CK+ KELK F FQI H+LR NS ADAQAN + L G+V+ E S+F
Sbjct: 141 SFCKKVKELKGTFHLFQIRHVLREYNSAADAQANFAVELPVGEVQ-EQSNF 190
>gi|30695999|ref|NP_199921.2| RNase H domain-containing protein [Arabidopsis thaliana]
gi|79330542|ref|NP_001032053.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|29028872|gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
gi|110743039|dbj|BAE99412.1| hypothetical protein [Arabidopsis thaliana]
gi|222424417|dbj|BAH20164.1| AT5G51080 [Arabidopsis thaliana]
gi|332008647|gb|AED96030.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|332008648|gb|AED96031.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 322
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 113/137 (82%), Gaps = 1/137 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+C +EFDGASKGNPG +GA AVL+ EDGS ++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 185 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 244
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 245 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 304
Query: 294 DAQANMGIYLKDGQVEA 310
D QANM L +G+VE
Sbjct: 305 DEQANMAARLSEGEVEV 321
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSS 63
EKDAF+VVRKGD+VGIYK L DCQ Q G SV DP ++VYKGY L K+ EE L++ GLK
Sbjct: 77 EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136
Query: 64 SYSVSASDVKSDLFGKIVPCPLQE--PASS 91
Y A D+K D+FG + PC Q+ P++S
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQDQLPSAS 166
>gi|79330550|ref|NP_001032054.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|222424272|dbj|BAH20093.1| AT5G51080 [Arabidopsis thaliana]
gi|332008649|gb|AED96032.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 259
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 113/136 (83%), Gaps = 1/136 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+C +EFDGASKGNPG +GA AVL+ EDGS ++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 122 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 181
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 182 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 241
Query: 294 DAQANMGIYLKDGQVE 309
D QANM L +G+VE
Sbjct: 242 DEQANMAARLSEGEVE 257
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSS 63
EKDAF+VVRKGD+VGIYK L DCQ Q G SV DP ++VYKGY L K+ EE L++ GLK
Sbjct: 14 EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 73
Query: 64 SYSVSASDVKSDLFGKIVPCPLQE--PASS 91
Y A D+K D+FG + PC Q+ P++S
Sbjct: 74 LYVFRALDLKEDMFGALTPCLFQDQLPSAS 103
>gi|414871215|tpg|DAA49772.1| TPA: putative rnase H family protein [Zea mays]
Length = 143
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGY 236
L FDGASKGNPG+AGAGAVL EDG V RLREG+G+ATNNVAEYR LILGLKYA++ G+
Sbjct: 5 LHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGVATNNVAEYRGLILGLKYAIRHGF 64
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K I+V GDS+LVC Q+ G+W+ N+ LC EA++LKE F SF+I H+ R N+EAD Q
Sbjct: 65 KRIKVHGDSQLVCNQVNGVWQTKQPNMMELCTEARKLKENFHSFEIIHVRREWNAEADRQ 124
Query: 297 ANMGIYLKDGQVEAE 311
AN+GI L G V E
Sbjct: 125 ANIGITLASGAVFEE 139
>gi|8843844|dbj|BAA97370.1| unnamed protein product [Arabidopsis thaliana]
Length = 316
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 108/130 (83%), Gaps = 1/130 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+C +EFDGASKGNPG +GA AVL+ EDGS ++++R+G+GIATNN AEY LILGLK+A++
Sbjct: 185 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIE 244
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L +K SF+I+H+LR+LNS+A
Sbjct: 245 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDA 304
Query: 294 DAQANMGIYL 303
D QANM L
Sbjct: 305 DEQANMAARL 314
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSS 63
EKDAF+VVRKGD+VGIYK L DCQ Q G SV DP ++VYKGY L K+ EE L++ GLK
Sbjct: 77 EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136
Query: 64 SYSVSASDVKSDLFGKIVPCPLQE--PASS 91
Y A D+K D+FG + PC Q+ P++S
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQDQLPSAS 166
>gi|297795913|ref|XP_002865841.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
gi|297311676|gb|EFH42100.1| hypothetical protein ARALYDRAFT_357356 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 105/127 (82%), Gaps = 1/127 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+C +EFDGASKGNPG +GA AVL+ EDGS + ++R+G+GIATNN AEY LILGLK+A++
Sbjct: 191 TCIIEFDGASKGNPGLSGAAAVLKTEDGSLICKMRQGLGIATNNAAEYHGLILGLKHAIE 250
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
KGY I+V+ DSKLVCMQ++G WK+N++ L+ L KEAK+L ++ SF+I+ +LRNLNS+A
Sbjct: 251 KGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDQCLSFEISQVLRNLNSDA 310
Query: 294 DAQANMG 300
D QANM
Sbjct: 311 DEQANMA 317
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 63/95 (66%), Gaps = 5/95 (5%)
Query: 2 EDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYG---LSKEAEEYLASH 58
+ EKDAF+VVRKGD++GIYK L DCQ Q G SV D ++VYKG G L EEYL+S
Sbjct: 74 DKEKDAFFVVRKGDIIGIYKDLIDCQAQVGSSVYDLPVSVYKGKGYSLLKDTTEEYLSSV 133
Query: 59 GLKSSSYSVSASDVKSDLFGKIVPCPLQE--PASS 91
GLK Y A D+K D+FG + PC Q+ P++S
Sbjct: 134 GLKKPLYVFRAFDLKEDMFGPLTPCIFQDQLPSAS 168
>gi|168049717|ref|XP_001777308.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671284|gb|EDQ57838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGY 236
+E+DGASKGNPG AGAGA++R DGSV+ LREG+G TNNVAEYRA ILGLK AL +G
Sbjct: 87 IEYDGASKGNPGPAGAGALVRGPDGSVFCELREGLGSVTNNVAEYRAFILGLKGALDRGI 146
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+RVQGDSKLVC Q+ G WK+N++ L L KEA+ L F+ + H+ N AD
Sbjct: 147 YRVRVQGDSKLVCQQVLGKWKVNDEGLLPLWKEAQMLMLNFREISVKHV--RFNPSADQL 204
Query: 297 ANMGIYL 303
AN + L
Sbjct: 205 ANEAVSL 211
>gi|399529259|gb|AFP44687.1| hypothetical protein, partial [Eragrostis tef]
Length = 234
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 107/196 (54%), Gaps = 50/196 (25%)
Query: 3 DEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
D + FY+VRKG+V+GIYKTLS+CQ Q SV DPS+TV+KGY L K+ EEYLA+ GL++
Sbjct: 87 DAGEPFYLVRKGNVIGIYKTLSECQAQVSKSVCDPSVTVFKGYSLRKDTEEYLAARGLRN 146
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQK 122
+ YS+ A+D + +LFG +VPCP Q+P D S + R S I K
Sbjct: 147 ALYSIDAADARDELFGDLVPCPFQQP--------DATSSSTLKR------SQEIETGPSK 192
Query: 123 RHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSCTLEFDG 182
+H + +P+ SHL SC LEFDG
Sbjct: 193 KH---PKVAEQEPLPD-----------------SHL----------------SCILEFDG 216
Query: 183 ASKGNPGQAGAGAVLR 198
ASKGNPG+AGAGA++R
Sbjct: 217 ASKGNPGKAGAGAIIR 232
>gi|302817304|ref|XP_002990328.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
gi|302825346|ref|XP_002994296.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300137827|gb|EFJ04640.1| hypothetical protein SELMODRAFT_138460 [Selaginella moellendorffii]
gi|300141890|gb|EFJ08597.1| hypothetical protein SELMODRAFT_131456 [Selaginella moellendorffii]
Length = 131
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
+DGASKGNPG+AGAGA+LR GSV +L G+G ATNNVAEY ALILGL+ AL +
Sbjct: 1 YDGASKGNPGKAGAGALLRNPKGSVIEKLYMGLGTATNNVAEYEALILGLQAALDRNVTS 60
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I+V GDS LVC Q+ G W + ++ L L + + L +F +F I+H+ R +N+EADA AN
Sbjct: 61 IQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALAN 120
Query: 299 MGIYL 303
GI L
Sbjct: 121 KGITL 125
>gi|412993526|emb|CCO14037.1| ribonuclease H [Bathycoccus prasinos]
Length = 383
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 152/320 (47%), Gaps = 54/320 (16%)
Query: 8 FYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSYSV 67
+Y V G G+Y+T +C+ Q FS + +K + +AE ++ ++ +++ S S
Sbjct: 27 YYAVASGRKPGVYETWDECKKQV-FSFPNAQ---HKSFSARADAEAWVKTNVVENPSSSS 82
Query: 68 SASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHFNE 127
A++V+ +P Q+ + + + S+ + L +
Sbjct: 83 IAAEVRP-----TIPTNTQK-RKAHTNSTKQTSITEYLDKNEEEFEDDDD---------- 126
Query: 128 DNCWNTQ--------SVPENYVAAAGSTSFSINTQRSHLNADSCLNTQ-SVPYNCYSCTL 178
W T+ S P A S NT+R LN + N + +VP+ L
Sbjct: 127 --GWTTEYEPMKPLSSPPAKRTTTARGKSNGNNTKRK-LNTSAKANAEENVPF-----VL 178
Query: 179 EFDGASKGNPGQAGAGAVLRAED----------------GSVYR-LREGVGIATNNVAEY 221
EFDGAS+GNPG AGAGA++RA G + + + +G+AT N AEY
Sbjct: 179 EFDGASRGNPGPAGAGALIRAPRIPSDAREEEEEEEERCGEIIKEICTSLGVATVNEAEY 238
Query: 222 RALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ 281
ALI GLK A++ G + IRV+GDS L+ Q++G WK+ L L E E+K+KF+ F
Sbjct: 239 HALITGLKAAIELGIEDIRVRGDSNLIVSQVKGDWKVKEPRLIPLHAECNEMKKKFRRFD 298
Query: 282 INHILRNLNSEADAQANMGI 301
I H+ R N +ADA AN I
Sbjct: 299 IAHVRREFNKDADALANSAI 318
>gi|387169510|gb|AFJ66171.1| hypothetical protein 11M19.15 [Arabidopsis halleri]
Length = 231
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 29/133 (21%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKY 230
+C +C +EFDGASKGNPG +GA AVL+ EDGS V ++R+G+GIATNN AEY LILGLK+
Sbjct: 125 SCETCIIEFDGASKGNPGLSGAAAVLKTEDGSLVCKMRQGLGIATNNAAEYHGLILGLKH 184
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
A++KGY I+V+ DSKLVCMQ++ LC +NLN
Sbjct: 185 AIEKGYTKIKVKTDSKLVCMQVR----------LSLCN------------------KNLN 216
Query: 291 SEADAQANMGIYL 303
S+AD QANM L
Sbjct: 217 SDADEQANMAARL 229
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKE-AEEYLASHGLKS 62
EKDAF+VVRKGD++GIYK L DCQ Q G SV DP ++VYKGY L K+ EEYL+S GLK
Sbjct: 16 EKDAFFVVRKGDIIGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTTEEYLSSVGLKK 75
Query: 63 SSYSVSASDVKSDLFGKIVPCPLQE--PASS 91
Y A D+K D+FG + P Q+ P++S
Sbjct: 76 PLYVFRALDLKEDMFGALTPFLFQDQLPSAS 106
>gi|308807192|ref|XP_003080907.1| putative RNase (ISS) [Ostreococcus tauri]
gi|116059368|emb|CAL55075.1| putative RNase (ISS) [Ostreococcus tauri]
Length = 342
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 84/127 (66%), Gaps = 3/127 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRA--EDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQK 234
LEFDGAS+GNPG+AGAGA+LR +D V L E +G T N AEY AL LGL+ A++
Sbjct: 205 LEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSERTVNEAEYAALCLGLRKAIEL 264
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G I V+GDSKL+ Q+ G +K+ ++NL + EA LK+KF F+I+H+ R N AD
Sbjct: 265 GITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHAD 324
Query: 295 AQANMGI 301
ANM +
Sbjct: 325 HLANMAV 331
>gi|145349572|ref|XP_001419204.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579435|gb|ABO97497.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 126
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 180 FDGASKGNPGQAGAGAVLRA--EDGSVYRLREGVG-IATNNVAEYRALILGLKYALQKGY 236
FDGAS+GNPG+AGAGA+LR +D V L E +G T N AEY AL LGL+ A++ G
Sbjct: 1 FDGASRGNPGEAGAGALLRRKRDDRIVEELLEYLGNERTVNEAEYAALCLGLRKAVELGI 60
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I V+GDSKL+ Q++G +K+ + NL + EA ELKEKF F+I+H+ R N AD
Sbjct: 61 TKIEVRGDSKLIVNQVEGSFKLKSANLKSMHAEACELKEKFTEFKISHVKREFNKHADHL 120
Query: 297 ANMGI 301
ANM +
Sbjct: 121 ANMAV 125
>gi|315426222|dbj|BAJ47865.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|315427897|dbj|BAJ49489.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
gi|343485053|dbj|BAJ50707.1| ribonuclease HI [Candidatus Caldiarchaeum subterraneum]
Length = 134
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 173 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYAL 232
+ + DGAS+GNPG AG G +++ D S ++ RE +G+ATNN AEY ALI L+ AL
Sbjct: 2 SHEAEIYVDGASRGNPGPAGIGYIIKIGDQS-FKHREHIGVATNNQAEYHALIKSLEKAL 60
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
Q G K V DS+L+ Q+ G +KI N L L ++ ++L +F+ F I H+ R N E
Sbjct: 61 QLGVKKAHVYSDSELLVKQVNGAYKIRNNTLTILHQKLQQLITRFEEFHITHVDREKNRE 120
Query: 293 ADAQANMGI 301
AD AN I
Sbjct: 121 ADRLANQAI 129
>gi|410582738|ref|ZP_11319844.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
gi|410505558|gb|EKP95067.1| putative SAM-dependent methyltransferase [Thermaerobacter
subterraneus DSM 13965]
Length = 504
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGY 236
L DGA++GNPG AG G VL DG+V R+ +G ATNNVAEY ALI GL+ AL +G
Sbjct: 366 LHTDGAARGNPGPAGIGVVLIGPDGAVAERIARFIGAATNNVAEYTALITGLQRALDRGA 425
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V DS+L+ Q+ G +++ N+ L L ++A L +F+ + H+ R N EAD
Sbjct: 426 RRLDVYSDSELMVRQLNGQYRVKNEGLKPLFEQAARLAAQFERVRFIHVPRERNREADRL 485
Query: 297 ANMGI 301
AN GI
Sbjct: 486 ANQGI 490
>gi|320354804|ref|YP_004196143.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
gi|320123306|gb|ADW18852.1| ribonuclease H [Desulfobulbus propionicus DSM 2032]
Length = 202
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 86/133 (64%), Gaps = 13/133 (9%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDG-------SVYRLREGVGIATNNVAEYRALILGL 228
C L DGAS+GNPGQAGAGAVL ++G SVY +G+ TNNVAEY+AL++GL
Sbjct: 71 CRLFTDGASRGNPGQAGAGAVL-LDNGNEELAAKSVY-----LGVCTNNVAEYKALLIGL 124
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
AL+ G + V DS+L+ QIQG +K+ N+ L L ++ +E ++F ++ I H+ R+
Sbjct: 125 DEALRHGCTDVAVFLDSELIVRQIQGRYKVKNEALLPLFQQVQERLDRFAAWSITHVPRS 184
Query: 289 LNSEADAQANMGI 301
N+ AD AN GI
Sbjct: 185 QNARADQLANRGI 197
>gi|327399396|ref|YP_004340265.1| ribonuclease H [Hippea maritima DSM 10411]
gi|327182025|gb|AEA34206.1| ribonuclease H [Hippea maritima DSM 10411]
Length = 177
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 74/121 (61%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS NPG+AG G V++ V ++ E +GIATNNVAEY ALI GLK + G K +
Sbjct: 54 DGASSSNPGKAGIGVVIKKNGVVVDKISEFIGIATNNVAEYSALIRGLKRLKELGVKKVN 113
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V DS+LV Q++G++++ ++NL L E L KF+ I HI R+ NS AD A
Sbjct: 114 VFSDSELVVKQLKGIYRVKDKNLKTLYNEVLRLSNKFEYLNIEHIKRDKNSMADTLAKTA 173
Query: 301 I 301
I
Sbjct: 174 I 174
>gi|374309432|ref|YP_005055862.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
gi|358751442|gb|AEU34832.1| ribonuclease H [Granulicella mallensis MP5ACTX8]
Length = 258
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++GNPG +G GA+++ E G V L E +GI TNN AEY L+ L++AL GYK++
Sbjct: 50 DGGARGNPGPSGYGALIQDEAGLVLAELSEFLGIRTNNYAEYSGLLGCLQWALDNGYKNL 109
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
RV DS+L+ QIQG +K+N+ +L L +EA+ + FQI+H LR+ N +AD AN
Sbjct: 110 RVVSDSELMVKQIQGKYKVNSPDLRPLWEEARRRIAQLDGFQISHALRHKNKDADRLAN 168
>gi|218441128|ref|YP_002379457.1| ribonuclease H [Cyanothece sp. PCC 7424]
gi|218173856|gb|ACK72589.1| ribonuclease H [Cyanothece sp. PCC 7424]
Length = 313
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 76/121 (62%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDG S+GNPG+A AV+ +G Y + + + IATNN AEY LI+GLK A + G K
Sbjct: 11 LYFDGGSRGNPGEAAGAAVIVMANGQHYAVSKYLKIATNNEAEYTGLIIGLKQAQELGIK 70
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+GDS+L+ QI G WK+N+ +L EAK+L + F+ +N I RN N AD +
Sbjct: 71 ELIVKGDSQLIINQITGKWKVNSPHLKEFYHEAKQLIKNFEQITLNWIRRNENQLADTEV 130
Query: 298 N 298
N
Sbjct: 131 N 131
>gi|397730525|ref|ZP_10497284.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
gi|396933917|gb|EJJ01068.1| RNase HI {Corynebacterium glutamicum [Rhodococcus sp. JVH1]
Length = 368
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A +G+V R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDAANGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + DG + E
Sbjct: 126 DRLANEAMDGADGDADVE 143
>gi|354614362|ref|ZP_09032231.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
gi|353221277|gb|EHB85646.1| Phosphoglycerate mutase [Saccharomonospora paurometabolica YIM
90007]
Length = 443
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A+ G V R EG+G+ TNNVAEYR L+ GL+ A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRDADTGEVLTERQEGLGVTTNNVAEYRGLVAGLEAAAA 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI N L L AKEL F + + I R N A
Sbjct: 66 VGASTVDVKMDSKLVVEQMCGRWKIKNAMLKPLALRAKELASGFDAVRYEWIPRERNKHA 125
Query: 294 DAQAN 298
D AN
Sbjct: 126 DRLAN 130
>gi|385679035|ref|ZP_10052963.1| fructose-2,6-bisphosphatase [Amycolatopsis sp. ATCC 39116]
Length = 357
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A G+V R EG+G+ATNN AEY LI GL+ A +
Sbjct: 1 MVVEADGGSRGNPGPAGYGAVVRDAATGAVLAERQEGLGVATNNFAEYSGLIAGLRAAAE 60
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI ++ L L ++A+EL F + + I R N+ A
Sbjct: 61 AGATEVDVRMDSKLVVEQMSGRWKIKHEALKPLAEQARELAAGFAAVRYEWIPRAENAHA 120
Query: 294 DAQANMGIYLKDGQ 307
D AN + + G+
Sbjct: 121 DRLANEAMDTQAGK 134
>gi|111018194|ref|YP_701166.1| bifunctional RNase H/acid phosphatase [Rhodococcus jostii RHA1]
gi|110817724|gb|ABG93008.1| probable alpha-ribazole phosphatase [Rhodococcus jostii RHA1]
Length = 368
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A +G+V R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDAANGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + DG + E
Sbjct: 126 DRLANEAMDGADGDADVE 143
>gi|433602799|ref|YP_007035168.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
gi|407880652|emb|CCH28295.1| hypothetical protein BN6_09660 [Saccharothrix espanaensis DSM
44229]
Length = 381
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLK 229
+E DG S+GNPG AG GAV+R A G V R EG+G+ATNNVAEYR LI GL+
Sbjct: 15 RAVKVVVEADGGSRGNPGPAGYGAVVRDAATGEVLVERSEGIGVATNNVAEYRGLIAGLR 74
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
A + G + + DSKLV Q+ G W++ + ++ L +EA+E+ F S I R
Sbjct: 75 AAAELGASAVVARMDSKLVVEQMSGRWQVKHPSMQPLAREAREVASGFASVSYEWIPRER 134
Query: 290 NSEADAQAN 298
N AD AN
Sbjct: 135 NKAADLLAN 143
>gi|256375028|ref|YP_003098688.1| phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
gi|255919331|gb|ACU34842.1| Phosphoglycerate mutase [Actinosynnema mirum DSM 43827]
Length = 391
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDG-SVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ E G +V R E +G+ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVLDEGGDTVLAERFEAIGVATNNVAEYRGLIAGLRAAAELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V+ DSKLV Q+ G W+I + + L EAKEL F+S I R N AD
Sbjct: 65 ATEVDVRMDSKLVVEQMSGRWQIKHPAMKPLAAEAKELAGDFESVTYGWIPRERNKRADK 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|257389105|ref|YP_003178878.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
gi|257171412|gb|ACV49171.1| ribonuclease H [Halomicrobium mukohataei DSM 12286]
Length = 197
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL +DG V E +G ATNN AEYRAL+ L+ A G+ I
Sbjct: 73 FDGASRGNPGPAAVGWVLVTDDGIVADGGERIGTATNNQAEYRALLRVLEVARDHGFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
R++GDS+L+ Q++G W N+ L +A+E F+ + I H+ R +N+ AD AN
Sbjct: 133 RLRGDSELIVKQVRGEWNTNDPELREHRVDAREGLMAFEEWSIEHVPREINARADELAN 191
>gi|354612078|ref|ZP_09030030.1| ribonuclease H [Halobacterium sp. DL1]
gi|353191656|gb|EHB57162.1| ribonuclease H [Halobacterium sp. DL1]
Length = 198
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG + G VL + DG V E +G ATNN AEY AL+ GL+ A Q G+ +
Sbjct: 74 FDGACRGNPGPSAVGWVLVSGDGIVAEDGETIGRATNNQAEYEALLAGLQAADQFGFDEV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ +L +EL E+F + + H+ R +N AD AN
Sbjct: 134 EVRGDSQLIVKQVKGAWDTNDPDLREKRVAVRELLERFDDWSLTHVPREVNDRADELANE 193
Query: 300 GI 301
+
Sbjct: 194 AL 195
>gi|145223479|ref|YP_001134157.1| bifunctional RNase H/acid phosphatase [Mycobacterium gilvum
PYR-GCK]
gi|315443840|ref|YP_004076719.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
gi|145215965|gb|ABP45369.1| Phosphoglycerate mutase [Mycobacterium gilvum PYR-GCK]
gi|315262143|gb|ADT98884.1| fructose-2,6-bisphosphatase [Mycobacterium gilvum Spyr1]
Length = 356
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED--GSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ + D + R +G ATNNVAEYR LI GL+ A Q
Sbjct: 3 VIVECDGGSRGNPGPAGYGAVVWSADRESVLAEARSAIGTATNNVAEYRGLIAGLESAAQ 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKL+ Q+ G W++ + +LA L ++A +L +F+ + I R NS A
Sbjct: 63 TGATEVEVRMDSKLIVEQMAGRWRVKHPDLAALHRQAADLARRFEHITYSWIPREQNSYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|227543054|ref|ZP_03973103.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181276|gb|EEI62248.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 388
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQK 234
T+ DG S+GNPG AG+G+V++ G+ R L VG TNNVAEY+ALI GL+ AL+
Sbjct: 4 VTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G H +V DSKLV Q+ G WKI + ++ K A EL +F+ F I + R N+ AD
Sbjct: 64 GATHCQVFMDSKLVVEQMSGRWKIKHPDMQAKAKIAHELINQFEQFSILWVPRKKNARAD 123
Query: 295 AQANMGI 301
AN+ +
Sbjct: 124 ELANIAM 130
>gi|294460894|gb|ADE76020.1| unknown [Picea sitchensis]
Length = 242
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIA-TNNVAEYRALILGLKYALQ 233
C L FDGA +GNPG AG G +L+ +G V R +G TNNVAEY+ALI GL++AL
Sbjct: 23 CKLYFDGACRGNPGTAGIGFLLKDSNGEVVERFCSLLGYKLTNNVAEYKALIAGLQHALD 82
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G I+ GDS+L+C Q+ G +++ N+ LA +L KF+S ++ H+ R+ N A
Sbjct: 83 HGITSIQAYGDSELICKQVNGQYRVANRRLARYYNTVCQLLGKFESHEVLHVPRDENCAA 142
Query: 294 DAQANMGI 301
D AN GI
Sbjct: 143 DDLANDGI 150
>gi|227488442|ref|ZP_03918758.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091656|gb|EEI26968.1| bifunctional RNase H/acid phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 388
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 1/127 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQK 234
T+ DG S+GNPG AG+G+V++ G+ R L VG TNNVAEY+ALI GL+ AL+
Sbjct: 4 VTVFADGGSRGNPGIAGSGSVVKDSHGNELRALSHFVGKTTNNVAEYQALINGLRAALEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G H +V DSKLV Q+ G WKI + ++ K A EL +F+ F I + R N+ AD
Sbjct: 64 GATHCQVFMDSKLVVEQMSGRWKIKHPDMQAKAKIAHELINQFEQFSILWVPRKKNARAD 123
Query: 295 AQANMGI 301
AN+ +
Sbjct: 124 ELANIAM 130
>gi|375093749|ref|ZP_09740014.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
gi|374654482|gb|EHR49315.1| fructose-2,6-bisphosphatase [Saccharomonospora marina XMU15]
Length = 389
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV++ A G V R EG+G+ATNNVAEYRALI GL+ A +
Sbjct: 5 VIVEADGGSRGNPGPAGYGAVVKDARSGEVLAERQEGLGVATNNVAEYRALIAGLEAAAR 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + L L A++L F I R+ N+ A
Sbjct: 65 TGATAVDVKMDSKLVVEQMSGRWKIKHAALQPLALRARDLAAGFDRVTYEWIPRSRNAHA 124
Query: 294 DAQAN 298
D AN
Sbjct: 125 DRLAN 129
>gi|448498360|ref|ZP_21610793.1| ribonuclease H [Halorubrum coriense DSM 10284]
gi|445698781|gb|ELZ50820.1| ribonuclease H [Halorubrum coriense DSM 10284]
Length = 198
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 71/122 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V EGVG ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGVVAEGGEGVGRATNNQAEYAALIRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L A+EL +F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWDANDPELRERRVRARELLTRFDRWSIAHVPREINERADDLANK 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|225873970|ref|YP_002755429.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
gi|225794363|gb|ACO34453.1| Ribonuclease HI [Acidobacterium capsulatum ATCC 51196]
Length = 221
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 167 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALI 225
S P+ C DG S+GNPG AG G L E G V L E +G+ TNNVAEY L+
Sbjct: 6 HSGPWITAYC----DGGSRGNPGPAGYGVYLEDEQGQKVDELYEFLGVKTNNVAEYSGLL 61
Query: 226 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
L++AL++G+ +RV DS+L+ Q+QG +++N+ +L L EAK + F+I H+
Sbjct: 62 AALEFALEEGHPCLRVVADSELMVKQMQGKYRVNSPDLRPLYDEAKRRVARLDGFRIEHV 121
Query: 286 LRNLNSEADAQANMGI 301
LR N AD AN+ +
Sbjct: 122 LRGKNKHADRLANLAM 137
>gi|449486556|ref|XP_004157331.1| PREDICTED: uncharacterized LOC101210930 [Cucumis sativus]
Length = 235
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 63/83 (75%)
Query: 1 MEDEKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASHGL 60
+E E F+VVRKGDVVG+YK+ SDCQ Q G S+ D ++V+KG+ L K+ EEYLAS GL
Sbjct: 86 VESEMGDFFVVRKGDVVGVYKSFSDCQAQIGSSICDLPVSVFKGHSLPKDTEEYLASVGL 145
Query: 61 KSSSYSVSASDVKSDLFGKIVPC 83
K++ Y++ A+D++ DLFG + PC
Sbjct: 146 KNALYTIKAADMRPDLFGSLAPC 168
>gi|312140237|ref|YP_004007573.1| rnase h domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
gi|311889576|emb|CBH48893.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus equi 103S]
Length = 377
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A+ G V RE +G+ATNNVAEYR LI GL A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAARD 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L + A+EL + F I R NS A
Sbjct: 66 LGAHEVDVRMDSKLVVEQMSGRWKVKHPDMIPLAQRARELADGFARVDFTWIPRAENSHA 125
Query: 294 DAQANMGIYLKDGQVEAECSSF 315
D AN + DG+ +A S F
Sbjct: 126 DRLANEAM---DGE-DAITSGF 143
>gi|325677016|ref|ZP_08156687.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
gi|325552178|gb|EGD21869.1| phosphoglycerate mutase [Rhodococcus equi ATCC 33707]
Length = 377
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A+ G V RE +G+ATNNVAEYR LI GL A
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDADRGRVLAERREFLGVATNNVAEYRGLIAGLAAARD 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L + A+EL + F I R NS A
Sbjct: 66 LGAHEVDVRMDSKLVVEQMSGRWKVKHPDMIPLAQRARELADGFARVDFTWIPRAENSHA 125
Query: 294 DAQANMGIYLKDGQVEAECSSF 315
D AN + DG+ +A S F
Sbjct: 126 DRLANEAM---DGE-DAITSGF 143
>gi|332799079|ref|YP_004460578.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|438002187|ref|YP_007271930.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|332696814|gb|AEE91271.1| ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|432178981|emb|CCP25954.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
Length = 141
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS+GNPG AG G +L ED +V + + E +G TNN+AEY A+I LK AL+ + I
Sbjct: 9 DGASRGNPGNAGIGVLLLDEDHNVIKEISEYIGETTNNIAEYTAMITALKEALEMDFDEI 68
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ QI +++ N+ L L KE +L E+F+S+ + H+ R N AD AN
Sbjct: 69 EVISDSELMVKQINKEYQVKNEGLKPLYKEICKLLEEFKSYTVRHVRRENNKRADELANR 128
Query: 300 GI 301
GI
Sbjct: 129 GI 130
>gi|424858491|ref|ZP_18282523.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
gi|356662178|gb|EHI42477.1| phosphoglycerate mutase [Rhodococcus opacus PD630]
Length = 368
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A GSV R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGSVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGNSDAE 143
>gi|302389500|ref|YP_003825321.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
gi|302200128|gb|ADL07698.1| ribonuclease H [Thermosediminibacter oceani DSM 16646]
Length = 142
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQK 234
T+ DGAS+GNPG AG G V+ E+G+ + + + +G TNN+AEY AL+ LK AL+
Sbjct: 4 LTVYTDGASRGNPGDAGIGIVILDENGNTLKEISDYIGQTTNNIAEYTALVTALKEALEM 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + I + DS+L+ QI G ++I N+ + L +A EL ++F+ F I+HI R N AD
Sbjct: 64 GCEEIGIFSDSELMVKQINGEYQIKNEGIKRLYAQAMELLKEFKRFSISHIRREQNKRAD 123
Query: 295 AQANMGIYL 303
AN GI L
Sbjct: 124 ELANEGIDL 132
>gi|268323231|emb|CBH36819.1| hypothetical protein, containing RNase H domain [uncultured
archaeon]
Length = 213
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGV-GIATNNVAEYRALILGLKYALQKGY 236
++FDGA+ NPG+ G G VL + + ++ + + TNN+AEY AL+ GL AL+ G+
Sbjct: 4 IQFDGAAIPNPGKMGIGVVLIEDKRLIAKISQKLPDKGTNNIAEYTALLTGLTKALELGW 63
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHILRNLNSEADA 295
KHI ++GDSKLV Q++G WKIN +L L + KEL E F S+ +N I RN NS AD
Sbjct: 64 KHIIIEGDSKLVINQVKGAWKINKAHLKRLHARVIKELSE-FDSYALNWIPRNKNSAADE 122
Query: 296 QANMGIYLK-DGQVEAECSS 314
A+ + K DG AE +
Sbjct: 123 LASKALRHKADGYHRAETKT 142
>gi|344210851|ref|YP_004795171.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
gi|343782206|gb|AEM56183.1| ribonuclease H-like protein [Haloarcula hispanica ATCC 33960]
Length = 198
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ +L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPDLRESRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|390956433|ref|YP_006420190.1| ribonuclease HI [Terriglobus roseus DSM 18391]
gi|390411351|gb|AFL86855.1| ribonuclease HI [Terriglobus roseus DSM 18391]
Length = 225
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++GNPG AG GAV+ AEDG+V L E +G TNN AEY L+ L++AL + +
Sbjct: 27 DGGARGNPGPAGYGAVIVAEDGTVLAELSEFLGHKTNNYAEYSGLLGVLQWALDHNHLRV 86
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
R+ DS+L+ QIQG +K+N+ +L L +EAK K + F I+H LR+ N AD AN
Sbjct: 87 RLVSDSELMVKQIQGKYKVNSPDLKPLWEEAKRRIAKLEFFNISHALRHKNKTADRLAN 145
>gi|332705263|ref|ZP_08425344.1| riibonuclease HI [Moorea producens 3L]
gi|332356006|gb|EGJ35465.1| riibonuclease HI [Moorea producens 3L]
Length = 286
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 164 LNTQSVPYNCYSC----TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVA 219
+N QSV T+ FDG S+GNPG AGA A+++ + + ATNN A
Sbjct: 1 MNNQSVNLTAKKTNSKLTILFDGGSRGNPGIAGAAAIIKQPGAQTISVSKFFPHATNNEA 60
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY ILGL+ AL+ G + ++GDS+LV Q++G W++ +L L +AK L +F S
Sbjct: 61 EYNGAILGLEKALEIGAGQVVLKGDSQLVINQLKGTWRVKTPHLRPLWTKAKSLLNQFDS 120
Query: 280 FQINHILRNLNSEADAQANMGIYLKDG 306
++ I R NSEADA AN + + G
Sbjct: 121 VKLEWIPRAQNSEADAAANQAMDQRKG 147
>gi|258450517|gb|ACV72188.1| ribonuclease H [uncultured organism]
Length = 156
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Query: 181 DGASKGNPGQAGAGAVLR-AEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG S+GNPGQ+ +G V++ A+D +++ E VGI TNN AEY+A+ L L+ AL+ G K +
Sbjct: 30 DGGSRGNPGQSASGFVIKDADDRVLFKGGEYVGITTNNQAEYQAVKLALEKALELGAKKV 89
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+++ DS LV Q+ G +KI N++L + K+L +F+SF ++H+ R N EADA N
Sbjct: 90 KLRLDSLLVVNQLNGSYKIRNRDLWSIHMFIKDLIGRFESFSVSHVRREFNKEADAMVNK 149
Query: 300 GIYLKDG 306
+ DG
Sbjct: 150 ILDEHDG 156
>gi|375099146|ref|ZP_09745409.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
gi|374659878|gb|EHR59756.1| fructose-2,6-bisphosphatase [Saccharomonospora cyanea NA-134]
Length = 382
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVYRLRE-GVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R D G V R+ G+G+ TNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQAGLGVTTNNVAEYNGLIAGLEAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + DSKLV Q+ G WKI N L L +EL ++F I R N+ A
Sbjct: 65 LGASTVETRLDSKLVVEQMSGRWKIKNAMLQPLALRVRELAQRFDRVTYTWIPRAKNAHA 124
Query: 294 DAQANMGIYLKDGQVEAECSS 314
D AN + + Q E S
Sbjct: 125 DRLANEAMDAQAAQAEGRSGS 145
>gi|384104743|ref|ZP_10005681.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
gi|383837826|gb|EID77223.1| bifunctional RNase H/acid phosphatase [Rhodococcus imtechensis
RKJ300]
Length = 368
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A G+V R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|432339703|ref|ZP_19589323.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
gi|430775124|gb|ELB90674.1| bifunctional RNase H/acid phosphatase [Rhodococcus wratislaviensis
IFP 2016]
Length = 368
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A G+V R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|419961618|ref|ZP_14477624.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
gi|414573002|gb|EKT83689.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus M213]
Length = 368
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A G+V R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVFDATHGTVLAERKESLGIATNNVAEYRGLIAGLDAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L ++A L +F S I R N+ A
Sbjct: 66 LGASEVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRQASTLARQFDSVTYTWIPRAENAHA 125
Query: 294 DAQANMGIYLKDGQVEAE 311
D AN + G +AE
Sbjct: 126 DRLANEAMDGAAGDSDAE 143
>gi|448668045|ref|ZP_21686288.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
gi|445768703|gb|EMA19782.1| ribonuclease H [Haloarcula amylolytica JCM 13557]
Length = 198
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVDDSGIVAEGGETIGTATNNQAEYKALIRAVEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ +L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPDLRESRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|257054785|ref|YP_003132617.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
gi|256584657|gb|ACU95790.1| fructose-2,6-bisphosphatase [Saccharomonospora viridis DSM 43017]
Length = 383
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAED-GSVYRLR-EGVGIATNNVAEYRALILGLKYAL 232
+ +E DG S+GNPG AG GAV+R D G V R EG+G+ TNNVAEYR LI GL+ A
Sbjct: 4 TVIVEADGGSRGNPGPAGYGAVVRDPDSGDVLAERQEGLGVTTNNVAEYRGLIAGLEAAA 63
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + + DSKLV Q+ G WKI N L L +EL +F + R N+
Sbjct: 64 ELGASAVEARLDSKLVVEQMSGRWKIKNAMLQPLALRVRELASQFDRVTYTWVPRAHNAH 123
Query: 293 ADAQAN 298
AD AN
Sbjct: 124 ADRLAN 129
>gi|320105790|ref|YP_004181380.1| ribonuclease H [Terriglobus saanensis SP1PR4]
gi|319924311|gb|ADV81386.1| ribonuclease H [Terriglobus saanensis SP1PR4]
Length = 214
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++GNPG AG GAV+ EDG+V L E +G TNN AEY L+ L++ L G++ +
Sbjct: 27 DGGARGNPGPAGYGAVVTTEDGTVLAELSEFLGFKTNNFAEYSGLLGVLQWTLANGHRKL 86
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN- 298
++ DS+L+ QIQG +K+N+ +L L EA+ + K + F+I H LR+ N AD AN
Sbjct: 87 KLVSDSELMVKQIQGKYKVNSPDLKPLHAEARAMIGKLEKFEIAHALRHKNKHADRLANE 146
Query: 299 -MGIYLKDGQV 308
M +K G V
Sbjct: 147 AMDRGMKRGPV 157
>gi|383828784|ref|ZP_09983873.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis XJ-54]
gi|383461437|gb|EID53527.1| fructose-2,6-bisphosphatase [Saccharomonospora xinjiangensis XJ-54]
Length = 382
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R D G V R +G+G+ATNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQDGLGVATNNVAEYTGLIAGLEAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + DSKLV Q+ G WKI N L L A+EL +F + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMSGRWKIKNAALQPLALRARELAGRFDRVTYTWVPRAKNAHA 124
Query: 294 DAQANMGIYLKDGQVE 309
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|322436933|ref|YP_004219145.1| ribonuclease H [Granulicella tundricola MP5ACTX9]
gi|321164660|gb|ADW70365.1| ribonuclease H [Granulicella tundricola MP5ACTX9]
Length = 203
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG S+GNPG +G GAV+ G + L E +GI TNN AEY L+ L YA++ +
Sbjct: 17 DGGSRGNPGPSGYGAVITDTGGQKIAELSEFLGIRTNNYAEYSGLLAVLAYAVENKRLSL 76
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN- 298
+V DS+L+ QIQG +K+N+ +L L +EA++ K +SF+I+H LR+ N +ADA AN
Sbjct: 77 KVVSDSELMVKQIQGKYKVNSPDLKPLWQEARDRIAKLKSFEISHALRHKNKDADALANQ 136
Query: 299 -MGIYLKDGQVEAECSS 314
M +K G+ +A ++
Sbjct: 137 AMDRGMKKGEYKATPTA 153
>gi|448531797|ref|ZP_21621085.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
gi|445707002|gb|ELZ58870.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
Length = 198
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY AL+ L+ A + G+ +
Sbjct: 73 FDGASRGNPGPASVGWCLVTSDGVVAEGGERIGRATNNQAEYAALVRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSELIVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|386846497|ref|YP_006264510.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
gi|359834001|gb|AEV82442.1| bifunctional RNase H/acid phosphatase [Actinoplanes sp. SE50/110]
Length = 366
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV++ A G V R +G ATNNVAEY LI GL+ A +
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVKDAATGEVLLERYAALGTATNNVAEYSGLIAGLRAAAE 66
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ ++ DSKLV Q+ G W+I N L L EA +L +FQ+ + I R N EA
Sbjct: 67 LNAARVDIRMDSKLVIEQMSGRWQIKNPGLRPLAAEAAQLVARFQTVSFDWIPRERNREA 126
Query: 294 DAQAN 298
DA AN
Sbjct: 127 DALAN 131
>gi|448589960|ref|ZP_21650019.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
gi|445735075|gb|ELZ86628.1| ribonuclease H [Haloferax elongans ATCC BAA-1513]
Length = 197
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTSDGIVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G WK N+ L +EL ++F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWKTNDPGLREHRVTVRELLDRFDRWSLEHVPREINDHADSLAN 191
>gi|448492137|ref|ZP_21608731.1| ribonuclease H [Halorubrum californiensis DSM 19288]
gi|445691596|gb|ELZ43780.1| ribonuclease H [Halorubrum californiensis DSM 19288]
Length = 198
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L QI+G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLTVKQIRGEWNTNDPELRERRVRARELLERFDRWSIAHVPREINERADDLAN 191
>gi|448434667|ref|ZP_21586441.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
gi|445684663|gb|ELZ37036.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
Length = 198
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 71/122 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPASVGWCLVTSDGVVAEGGERIGRATNNQAEYAALIRALEGADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSELIVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|448689534|ref|ZP_21695118.1| ribonuclease H [Haloarcula japonica DSM 6131]
gi|445777805|gb|EMA28765.1| ribonuclease H [Haloarcula japonica DSM 6131]
Length = 198
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVDDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|448679145|ref|ZP_21689982.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
gi|445771243|gb|EMA22300.1| ribonuclease H [Haloarcula argentinensis DSM 12282]
Length = 198
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG + G VL + G V E +G ATNN AEYRALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPSSVGYVLVDDSGIVTEGGETIGTATNNQAEYRALIRAIEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTGFDDWQIEHVPREINDRADELAN 192
>gi|55379866|ref|YP_137716.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|448641109|ref|ZP_21677896.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
gi|55232591|gb|AAV48010.1| ribonuclease H-like protein [Haloarcula marismortui ATCC 43049]
gi|445761634|gb|EMA12882.1| ribonuclease H [Haloarcula sinaiiensis ATCC 33800]
Length = 198
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|451340121|ref|ZP_21910623.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
gi|449417098|gb|EMD22783.1| Phosphoglycerate mutase family [Amycolatopsis azurea DSM 43854]
Length = 375
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV++ A G V R+ +GIATNNVAEY LI GL A + G
Sbjct: 7 IEADGGSRGNPGPAGYGAVVKDAATGEVLAERKAYIGIATNNVAEYGGLIAGLTAAAELG 66
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V+ DSKLV Q+ G WK+ + ++ L EAKEL +F + I R NS AD
Sbjct: 67 VSTVDVRMDSKLVVEQMSGRWKVKHPSMQPLNAEAKELAARFSRVRYEWIPRAENSHADG 126
Query: 296 QAN 298
AN
Sbjct: 127 LAN 129
>gi|448654581|ref|ZP_21681507.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445766429|gb|EMA17556.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 198
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVNDSGIVTEGGETIGTATNNQAEYKALIRAVEVARDYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIIKQVRGEWDTNDPELREHRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|389846161|ref|YP_006348400.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|448616219|ref|ZP_21664929.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
gi|388243467|gb|AFK18413.1| ribonuclease HI [Haloferax mediterranei ATCC 33500]
gi|445750874|gb|EMA02311.1| ribonuclease H [Haloferax mediterranei ATCC 33500]
Length = 197
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + +G V + +G TNN AEY ALI L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNGIVAEGSKRIGETTNNRAEYEALIEALSVADEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G WK N+ L +A+EL E+F + + H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWKTNDPGLRERRVKARELLERFDRWSLEHVPREINDRADTLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|120404586|ref|YP_954415.1| bifunctional RNase H/acid phosphatase [Mycobacterium vanbaalenii
PYR-1]
gi|119957404|gb|ABM14409.1| Phosphoglycerate mutase [Mycobacterium vanbaalenii PYR-1]
Length = 369
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG GAV+ + D V L E +G ATNNVAEYR LI GL+ A
Sbjct: 3 VVVEADGGSRGNPGPAGYGAVVVSAD-RVSVLAETSSAIGTATNNVAEYRGLIAGLEAAA 61
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V DSKLV Q+ G W++ + +LA L ++A++L+ +FQ + R NS
Sbjct: 62 ELGATEVEVLMDSKLVVEQMSGRWRVRHPSLAPLHQQARDLERRFQRVSYRWVPRAQNSR 121
Query: 293 ADAQAN 298
AD AN
Sbjct: 122 ADRLAN 127
>gi|443672672|ref|ZP_21137754.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
gi|443414838|emb|CCQ16092.1| RNase H domain phosphoglycerate/bisphosphoglycerate mutase
[Rhodococcus sp. AW25M09]
Length = 377
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 179 EFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
E DG S+GNPG AG GAV+ + D S + R +GIATNNVAEY LI L A G
Sbjct: 10 EADGGSRGNPGPAGYGAVVFSADRSEVLAERRAALGIATNNVAEYNGLIAALTAAADVGA 69
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V+ DSKLV Q+ G WK+ + ++ L ++A EL +F S I R NS ADA
Sbjct: 70 REVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRKAAELARRFDSVTYEWIPRAKNSHADAL 129
Query: 297 AN 298
AN
Sbjct: 130 AN 131
>gi|448579976|ref|ZP_21644805.1| ribonuclease H [Haloferax larsenii JCM 13917]
gi|445722649|gb|ELZ74306.1| ribonuclease H [Haloferax larsenii JCM 13917]
Length = 197
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTSDGIVAEGSKRIGKTTNNRAEYEALVEALTAAAEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G WK N+ L +EL ++F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWKTNDPGLREHRVTVRELLDQFDRWSLEHVPREINEHADSLAN 191
>gi|222530387|ref|YP_002574269.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
gi|222457234|gb|ACM61496.1| ribonuclease H [Caldicellulosiruptor bescii DSM 6725]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGAG V+ G+V + +GI TNN AEY ALI L+ AL+ G K
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIKE 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ VQGDS+LV Q+ G W IN +L L ++A EL EKF + I R N AD +N
Sbjct: 66 LEVQGDSQLVINQVFGNWNINMPHLYSLYEQATELLEKFDKVKARWIPREKNQLADLLSN 125
Query: 299 MGI 301
I
Sbjct: 126 KAI 128
>gi|291302271|ref|YP_003513549.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
gi|290571491|gb|ADD44456.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728]
Length = 137
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG GAV+ E G R+G +GIATNNVAEY LI GL A +
Sbjct: 7 VIVEADGGSRGNPGPAGYGAVVLDETGQELMDRQGFLGIATNNVAEYSGLIAGLTAAREL 66
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G ++ V+ DSKLV Q+ G WK+ + L L EA L +F S I R N+ AD
Sbjct: 67 GAANVAVRMDSKLVVEQMNGNWKVRHPGLRPLAAEAAALVRQFDSVTFTWIPRADNTRAD 126
Query: 295 AQAN 298
A AN
Sbjct: 127 ALAN 130
>gi|448482041|ref|ZP_21605255.1| ribonuclease H [Halorubrum arcis JCM 13916]
gi|445821443|gb|EMA71234.1| ribonuclease H [Halorubrum arcis JCM 13916]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|448634470|ref|ZP_21674868.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
gi|445749443|gb|EMA00888.1| ribonuclease H [Haloarcula vallismortis ATCC 29715]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G VL + G V E +G ATNN AEY+ALI ++ A G+ +
Sbjct: 74 FDGASRGNPGPASVGYVLVDDSGIVTEGGETIGTATNNQAEYKALIRAIEVARNYGFDDV 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL F +QI H+ R +N AD AN
Sbjct: 134 HIRGDSELIVKQVRGEWDTNDPELRENRVRVRELLTDFDDWQIEHVPREINDRADELAN 192
>gi|448450735|ref|ZP_21592468.1| ribonuclease H [Halorubrum litoreum JCM 13561]
gi|448510575|ref|ZP_21615952.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|448522304|ref|ZP_21618427.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445695848|gb|ELZ47947.1| ribonuclease H [Halorubrum distributum JCM 9100]
gi|445702248|gb|ELZ54206.1| ribonuclease H [Halorubrum distributum JCM 10118]
gi|445811246|gb|EMA61254.1| ribonuclease H [Halorubrum litoreum JCM 13561]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|134098170|ref|YP_001103831.1| bifunctional ribonuclease H/phosphoglycerate mutase
[Saccharopolyspora erythraea NRRL 2338]
gi|291007551|ref|ZP_06565524.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
gi|133910793|emb|CAM00906.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora erythraea NRRL 2338]
Length = 366
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLRE-GVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A G V R G+G ATNN AEYR LI GL A++
Sbjct: 5 VVIEADGGSRGNPGPAGCGAVVRDATSGEVLAERSVGLGTATNNAAEYRGLIEGLSAAVE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + I V+ DSKLV Q+ G WK+ + NL L ++A+ L F + + R N+ A
Sbjct: 65 LGAEAIEVRMDSKLVIEQMAGRWKVKHANLQPLAEKARALLAGFGEVDLEWVPRARNAHA 124
Query: 294 DAQAN 298
D AN
Sbjct: 125 DRLAN 129
>gi|448425077|ref|ZP_21582706.1| ribonuclease H [Halorubrum terrestre JCM 10247]
gi|445681337|gb|ELZ33771.1| ribonuclease H [Halorubrum terrestre JCM 10247]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGVVAEGGERIGRATNNQAEYAALIRALEAADEYGFDAV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L Q++G W N+ L A+EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLTVKQVRGEWNANDPELRERRVRARELLERFDRWSIAHVPREINERADDLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|453072807|ref|ZP_21975855.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
gi|452757455|gb|EME15860.1| bifunctional RNase H/acid phosphatase [Rhodococcus qingshengii BKS
20-40]
Length = 371
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG GAV+ SV R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDASRSVLAERKESIGIATNNVAEYRGLIAGLTAAGEL 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 295 AQAN 298
AN
Sbjct: 126 RLAN 129
>gi|404421284|ref|ZP_11003005.1| bifunctional RNase H/acid phosphatase [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
gi|403659124|gb|EJZ13786.1| bifunctional RNase H/acid phosphatase [Mycobacterium fortuitum
subsp. fortuitum DSM 46621]
Length = 361
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 178 LEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ AE + R E +G ATNNVAEYR LI GL+ + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVFDAEHAVILAERKEAIGRATNNVAEYRGLIAGLEATAELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L + A EL FQ + I R+ NS AD
Sbjct: 65 ATEVAVSMDSKLVVEQMSGRWKVKHPDLVPLQRRAAELAAGFQRISYSWIPRDRNSHADG 124
Query: 296 QANMGI-----YLKDGQVEAECSSFT 316
AN + + D EAE ++ +
Sbjct: 125 LANEAMDAAAGIVSDRPAEAEKAALS 150
>gi|226186262|dbj|BAH34366.1| ribonuclease H/acid phosphatase [Rhodococcus erythropolis PR4]
Length = 374
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG GAV+ SV R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDSTRSVLAERKESIGIATNNVAEYRGLIAGLAAAGEL 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 295 AQAN 298
AN
Sbjct: 126 RLAN 129
>gi|54023608|ref|YP_117850.1| bifunctional RNase H/acid phosphatase [Nocardia farcinica IFM
10152]
gi|54015116|dbj|BAD56486.1| putative phosphoglycerate mutase [Nocardia farcinica IFM 10152]
Length = 406
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED--GSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D + RE VGIATNNVAEYR LI GL+ A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDADHVAVLAERRESVGIATNNVAEYRGLIAGLEAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+ DSKLV Q+ G WK+ + + L A+ L F + I R N+ A
Sbjct: 66 LGARTVDVRMDSKLVVEQMSGRWKVKHAAMIPLADRARRLVAGFDAVTFTWIPRAQNAHA 125
Query: 294 DAQAN 298
D AN
Sbjct: 126 DRLAN 130
>gi|333990306|ref|YP_004522920.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
gi|333486274|gb|AEF35666.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JDM601]
Length = 369
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG G+V+ + D + + + +G+ATNNVAEYR L+ GL A +
Sbjct: 3 VVVEADGGSRGNPGPAGYGSVVWSADRAEVLAETKGSIGVATNNVAEYRGLVAGLTEAAR 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + +L L A+EL KF + N I R NS A
Sbjct: 63 LGAAEVAVFMDSKLVVEQMAGRWKVKHPDLIPLHTRARELAAKFDHVRYNWIPREKNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|442323255|ref|YP_007363276.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
gi|441490897|gb|AGC47592.1| ribonuclease H [Myxococcus stipitatus DSM 14675]
Length = 208
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAV+ +G V RL +G TNN AEY+ L+LGL++A G + +
Sbjct: 83 DGAARGNPGPAGAGAVVTDAEGQVLARLGRFLGTQTNNTAEYQGLLLGLRHAKSLGAREV 142
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G +++ + L L EA++L F +++HI R N EADA +N
Sbjct: 143 DVYADSELLIRQLGGQYQVKSATLKPLFDEARKLLAAFARVRLHHIPRAKNGEADAMSNR 202
Query: 300 GI 301
I
Sbjct: 203 AI 204
>gi|435854551|ref|YP_007315870.1| ribonuclease HI [Halobacteroides halobius DSM 5150]
gi|433670962|gb|AGB41777.1| ribonuclease HI [Halobacteroides halobius DSM 5150]
Length = 134
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
+ T+ DG S+GNPG AG GAV+ V L E +G ATNNVAEY+A+ILGLK L
Sbjct: 3 NLTMYTDGGSRGNPGPAGVGAVIYNNGQKVEELFEYIGRATNNVAEYKAVILGLKL-LAD 61
Query: 235 GYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
Y I ++ DS+L+ Q+ G +K+ + NL L ++ KEL F + HI R N E
Sbjct: 62 NYSQAKIEIKADSQLLVKQLTGEYKVKSDNLKPLYQQIKELITNFSKVEFTHIPREENKE 121
Query: 293 ADAQANMGI 301
ADA AN +
Sbjct: 122 ADALANQAM 130
>gi|226360320|ref|YP_002778098.1| bifunctional RNase H/acid phosphatase [Rhodococcus opacus B4]
gi|226238805|dbj|BAH49153.1| ribonuclease H/acid phosphatase [Rhodococcus opacus B4]
Length = 368
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG G V+ A DG+V R E +G TNNVAEYR LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGTVVFAAADGAVLAERKESLGTVTNNVAEYRGLIAGLEAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F S I R N+ A
Sbjct: 66 VGASGVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRASELARQFNSVTYTWIPRAENAHA 125
Query: 294 DAQAN 298
D AN
Sbjct: 126 DRLAN 130
>gi|384564675|ref|ZP_10011779.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
gi|384520529|gb|EIE97724.1| fructose-2,6-bisphosphatase [Saccharomonospora glauca K62]
Length = 387
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVYRLRE-GVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R D G V R+ G+G+ TNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPDTGDVLAERQAGLGVTTNNVAEYNGLIAGLEAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + DSKLV Q+ G WKI N L L +EL +F + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMNGRWKIKNAMLQPLALRVRELARRFDRVTYTWVPRERNAHA 124
Query: 294 DAQANMGIYLKDGQVE 309
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|317122878|ref|YP_004102881.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
gi|315592858|gb|ADU52154.1| ribonuclease H [Thermaerobacter marianensis DSM 12885]
Length = 140
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGY 236
L DGA++GNPG AG G VL G V R+ +G ATNNVAEY ALI GL+ AL+ G
Sbjct: 10 LHTDGAARGNPGPAGIGVVLIDPRGQVAERVARFIGTATNNVAEYTALITGLQRALEHGA 69
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V DS+L+ Q+ G +++ N L L ++ +L +F + + H+ R N +AD
Sbjct: 70 RRLEVYSDSELMVRQLNGQYRVKNDGLKPLYRQVLDLVARFDAVRFVHVPRERNKDADRL 129
Query: 297 ANMGI 301
AN GI
Sbjct: 130 ANQGI 134
>gi|168699254|ref|ZP_02731531.1| ribonuclease H [Gemmata obscuriglobus UQM 2246]
Length = 212
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
+ T+ DGAS+GNPG A VL V + +G A+NNVAEY AL+ GL A +
Sbjct: 4 TATMHIDGASRGNPGAAAYAVVLARPGLPVVEEADTIGTASNNVAEYTALVEGLGLAAEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K ++V DS+L+ Q+ G +K+ N++L L +EA L+++F+S I H+ R N AD
Sbjct: 64 GVKQLQVFSDSELMVKQMAGAYKVKNEDLRTLYEEACRLRKQFESVTITHVRREQNKRAD 123
Query: 295 AQANM---GIYLKDGQV 308
A N G K GQV
Sbjct: 124 AIGNEALDGRPRKRGQV 140
>gi|407643380|ref|YP_006807139.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
gi|407306264|gb|AFU00165.1| bifunctional RNase H/acid phosphatase [Nocardia brasiliensis ATCC
700358]
Length = 377
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A D + RE +G+ATNNVAEYR LI GL+ + +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVYAADHVRVLAERREFIGVATNNVAEYRGLIAGLEASAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+ DSKLV Q+ G WK+ + + L A+ L F I RN N+ A
Sbjct: 66 LGAQVVAVRMDSKLVVEQMSGRWKVKHAAMIPLADRARRLVAGFDRVSFTWIPRNENAHA 125
Query: 294 DAQAN 298
D AN
Sbjct: 126 DRLAN 130
>gi|197121176|ref|YP_002133127.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|220915876|ref|YP_002491180.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
gi|196171025|gb|ACG71998.1| ribonuclease H [Anaeromyxobacter sp. K]
gi|219953730|gb|ACL64114.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 253
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 176 CTLEF-DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
CT F DGA++GNPG AGAGAV+ DG V ++ + +G +TNNVAEY LILGLK A
Sbjct: 122 CTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKA 181
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V DS+L+ Q+ G + + +L L EA+ L F Q+ H+ R N+ A
Sbjct: 182 MGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEARALIAGFDRIQVRHVPREENTLA 241
Query: 294 DAQANMGI 301
DA +N I
Sbjct: 242 DAMSNRAI 249
>gi|153003635|ref|YP_001377960.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
gi|152027208|gb|ABS24976.1| ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 254
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAV+ + DG V ++ + +G +TNNVAEY LILGL+ A G K +
Sbjct: 129 DGAARGNPGPAGAGAVIVSPDGHIVAKVGKFLGESTNNVAEYMGLILGLRRAKAMGIKEL 188
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G + + ++L L EA++L + F Q+ HI R N +ADA +N
Sbjct: 189 EVFADSELLVKQLAGDYAVKAEHLRPLHDEAQQLLKGFSWIQVRHIPREENGQADAMSNR 248
Query: 300 GI 301
I
Sbjct: 249 AI 250
>gi|229490280|ref|ZP_04384122.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
gi|229322812|gb|EEN88591.1| phosphoglycerate mutase [Rhodococcus erythropolis SK121]
Length = 376
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG GAV+ SV R E +GIATNNVAEYR LI GL A +
Sbjct: 6 VIVEADGGSRGNPGPAGYGAVVFDASRSVLAERKESIGIATNNVAEYRGLIAGLIAAGEL 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WK+ + ++ L + A EL +F I R NS AD
Sbjct: 66 GASTVDVRMDSKLVVEQMSGRWKVKHPDMIPLQRRAAELATQFSRVTYTWIPRGENSHAD 125
Query: 295 AQAN 298
AN
Sbjct: 126 RLAN 129
>gi|108800308|ref|YP_640505.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MCS]
gi|119869436|ref|YP_939388.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. KMS]
gi|126435931|ref|YP_001071622.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. JLS]
gi|108770727|gb|ABG09449.1| Phosphoglycerate mutase [Mycobacterium sp. MCS]
gi|119695525|gb|ABL92598.1| Phosphoglycerate mutase [Mycobacterium sp. KMS]
gi|126235731|gb|ABN99131.1| Phosphoglycerate mutase [Mycobacterium sp. JLS]
Length = 365
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG G+V+ +ED S + ++ +G ATNNVAEYR LI GL+ A G
Sbjct: 5 VEADGGSRGNPGPAGYGSVVWSEDRSSVLAEAKQSIGRATNNVAEYRGLIAGLEEAANVG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKL+ Q+ G W++ + +L L + A+EL E F + I R N+ AD
Sbjct: 65 ATEVAVSMDSKLIVEQMAGRWRVKHPDLIPLYQRARELAEGFDRVTYSWIPRAANARADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|206891174|ref|YP_002248860.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743112|gb|ACI22169.1| RNase H [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 132
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS+GNPG AG G V+ ++ V + E +G TNNVAEY ALI GL+ AL++ + I
Sbjct: 8 DGASRGNPGDAGIGCVIIFDNKKV-EISEYIGKTTNNVAEYTALIKGLEEALRQKAQEIE 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ DS+L+ QI G++K+ N+NL L ++AK+L F+ +QI HI R N AD A
Sbjct: 67 IFSDSELLVHQINGIYKVRNKNLVPLYEKAKKLLSNFKKYQIFHIYRENNFIADKLA 123
>gi|381164574|ref|ZP_09873804.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
gi|418462853|ref|ZP_13033889.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|359735516|gb|EHK84476.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea SZMC 14600]
gi|379256479|gb|EHY90405.1| fructose-2,6-bisphosphatase [Saccharomonospora azurea NA-128]
Length = 398
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R G V R +G+GIATNNVAEY LI GL+ A +
Sbjct: 5 VVVEADGGSRGNPGPAGYGAVVRDPRTGEVLAERQDGLGIATNNVAEYTGLIAGLEAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + DSKLV Q+ G WKI N L L A+E+ F+ + R N+ A
Sbjct: 65 LGASTVEARLDSKLVVEQMSGRWKIKNAALQPLALRAREVASGFERVTYTWVPRAKNAHA 124
Query: 294 DAQANMGIYLKDGQVE 309
D AN + D Q E
Sbjct: 125 DRLANEAM---DAQAE 137
>gi|405371435|ref|ZP_11027041.1| ribonuclease H [Chondromyces apiculatus DSM 436]
gi|397088908|gb|EJJ19862.1| ribonuclease H [Myxococcus sp. (contaminant ex DSM 436)]
Length = 212
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAVL G+V RL +G TNN AEY L+LGLK+A G + +
Sbjct: 87 DGAARGNPGPAGAGAVLMDPTGNVVARLGRFLGTQTNNSAEYMGLLLGLKHAQSLGAREV 146
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G +++ + L L +EA++L + F +++H+ R N+EAD +N
Sbjct: 147 DVYADSELLIRQLGGRYQVKSATLKPLYEEARKLLKGFTKVKLHHVPRAQNAEADEMSNR 206
Query: 300 GI 301
I
Sbjct: 207 AI 208
>gi|158320317|ref|YP_001512824.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
gi|158140516|gb|ABW18828.1| ribonuclease H [Alkaliphilus oremlandii OhILAs]
Length = 134
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG S+GNPG AG G ++ +DG++ R + + +G TNNVAEY+AL GL+ AL G + I
Sbjct: 11 DGGSRGNPGIAGIGVSIQDKDGNIIREISQYIGEQTNNVAEYKALSRGLEVALDLGIEKI 70
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
DS+LV QI+G +K+ N+ + + L ++F+SF INH+ R LN AD AN
Sbjct: 71 TCYLDSELVVKQIKGEYKVKNERMIPMYNMVMPLVKEFKSFSINHVRRELNKRADQLAN 129
>gi|312126659|ref|YP_003991533.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108]
gi|311776678|gb|ADQ06164.1| ribonuclease H [Caldicellulosiruptor hydrothermalis 108]
Length = 199
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGAG V+ G+V + +GI TNN AEY ALI L+ AL+ G K
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPAGNVILEYSKELGIKTNNEAEYLALIELLQKALELGIKE 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ + GDS+LV Q+ G W IN +L L ++A EL EKF + I R N AD+ +N
Sbjct: 66 LEILGDSQLVINQVFGSWNINMPHLYALYEQATELLEKFDKVKAKWIPREKNQLADSLSN 125
Query: 299 MGI 301
I
Sbjct: 126 KAI 128
>gi|448604363|ref|ZP_21657615.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
gi|445744523|gb|ELZ95999.1| ribonuclease H [Haloferax sulfurifontis ATCC BAA-897]
Length = 197
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDGIVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSTFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|448624091|ref|ZP_21670164.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
gi|445750058|gb|EMA01497.1| ribonuclease H [Haloferax denitrificans ATCC 35960]
Length = 197
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDGIVAEGSQRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|310659055|ref|YP_003936776.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
[[Clostridium] sticklandii]
gi|308825833|emb|CBH21871.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
[[Clostridium] sticklandii]
Length = 428
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 72/121 (59%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG S+GNPG+A G V+ D VY +GIATNN+AEY AL+ G++ ++ G + +
Sbjct: 7 DGGSRGNPGEAAIGFVIYDGDKIVYEKARPIGIATNNIAEYTALLEGVEALIRLGVQDVE 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
DS+LV QI+G +K+ NQ L + K+ F+SF INH+ R N EAD N+
Sbjct: 67 AFLDSELVVKQIKGEYKVKNQELKVIFDRIKDKINNFKSFSINHVKRAYNKEADRILNIA 126
Query: 301 I 301
+
Sbjct: 127 L 127
>gi|258653438|ref|YP_003202594.1| phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
gi|258556663|gb|ACV79605.1| Phosphoglycerate mutase [Nakamurella multipartita DSM 44233]
Length = 370
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Query: 168 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALIL 226
S P ++ DG S+GNPG AG GAV+ + G+V R +G ATNNVAEY LI
Sbjct: 2 SAPQQANHVVVQADGGSRGNPGPAGYGAVVFDDQGAVLAERAASIGRATNNVAEYGGLIA 61
Query: 227 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 286
GL+ AL+ G + VQ DSKLV Q+ G WK+ + ++ L A L +F+ + +
Sbjct: 62 GLEAALELGAVTVAVQMDSKLVVEQMSGRWKVKHPDIKPLASRAAGLVAQFERVTFDWLP 121
Query: 287 RNLNSEADAQAN 298
R N+ AD AN
Sbjct: 122 RARNAHADRLAN 133
>gi|292654895|ref|YP_003534792.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|448292887|ref|ZP_21483208.1| ribonuclease H [Haloferax volcanii DS2]
gi|291370792|gb|ADE03019.1| ribonuclease H-like protein [Haloferax volcanii DS2]
gi|445571862|gb|ELY26405.1| ribonuclease H [Haloferax volcanii DS2]
Length = 197
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +A+EL F+ + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFERWSLEHVPREINDRADSLAN 191
>gi|108756881|ref|YP_633866.1| ribonuclease H [Myxococcus xanthus DK 1622]
gi|108460761|gb|ABF85946.1| ribonuclease H [Myxococcus xanthus DK 1622]
Length = 147
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Query: 161 DSCLNTQSVP-YNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNV 218
D+ +++S P YS DGA++GNPG AGAGAVL G+V RL +G TNN
Sbjct: 6 DAAPDSESHPRLRVYS-----DGAARGNPGPAGAGAVLMDPAGNVVARLGRFLGHQTNNC 60
Query: 219 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 278
AEY L+LGLK+A G + + V DS+L+ Q+ G +++ + L L +EA++L + F
Sbjct: 61 AEYMGLLLGLKHAQSLGAREVEVFADSELLIRQLGGRYQVKSPTLKPLYEEARKLLKGFT 120
Query: 279 SFQINHILRNLNSEADAQANMGI 301
+++H+ R N+EAD +N I
Sbjct: 121 KVKLHHVPRAQNAEADEMSNRAI 143
>gi|312794240|ref|YP_004027163.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181380|gb|ADQ41550.1| ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 199
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGASKGNPG AGAG V+ +G V + +GI TNN AEY ALI L+ AL+ G +
Sbjct: 6 FDGASKGNPGPAGAGIVIVNPEGRVILEYSKELGIRTNNEAEYLALIELLQKALELGIRE 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ + GDS+LV Q+ G W IN +L L +A EL EKF + I R N AD+ +N
Sbjct: 66 LEIMGDSQLVINQVFGNWNINMPHLYTLYNQATELLEKFDKVKARWIPREKNQLADSLSN 125
Query: 299 MGI 301
I
Sbjct: 126 KAI 128
>gi|404446830|ref|ZP_11011927.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
gi|403649864|gb|EJZ05169.1| bifunctional RNase H/acid phosphatase [Mycobacterium vaccae ATCC
25954]
Length = 359
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ + D G+V E +G ATNNVAEYR LI GL A
Sbjct: 3 VIVEADGGSRGNPGPAGFGAVVWSADRGAVLAEAAESIGRATNNVAEYRGLIAGLGAADD 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G W++ + +LA L ++A +L +F+ + I R NS A
Sbjct: 63 LGATEVEVYMDSKLVVEQMSGRWRVKHPDLAPLHQQANDLARRFEHVSYSWIPRAQNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|307150716|ref|YP_003886100.1| ribonuclease H [Cyanothece sp. PCC 7822]
gi|306980944|gb|ADN12825.1| ribonuclease H [Cyanothece sp. PCC 7822]
Length = 320
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDG S+GNPG+A AVL DG Y + E + +ATNN AEY LI+GL+ A + G +
Sbjct: 16 LYFDGGSRGNPGEAAGAAVLVMPDGQKYTVSEYISVATNNEAEYTGLIVGLQKAKELGIE 75
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+GDS+LV Q+ WK+N+ + +E + L + F+ ++ + R+ N ADA
Sbjct: 76 ALTVKGDSQLVINQVNRKWKVNSARMQKFYQEVQGLIKSFEKVTLDWVPRHENHLADAAV 135
Query: 298 NMGI 301
N I
Sbjct: 136 NQCI 139
>gi|379746935|ref|YP_005337756.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|379754209|ref|YP_005342881.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
gi|378799299|gb|AFC43435.1| phosphoglycerate mutase [Mycobacterium intracellulare ATCC 13950]
gi|378804425|gb|AFC48560.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-02]
Length = 379
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL--REGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + + ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLVENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|302342840|ref|YP_003807369.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
gi|301639453|gb|ADK84775.1| ribonuclease H [Desulfarculus baarsii DSM 2075]
Length = 202
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKY 230
++ TL DG ++GNPG AGAGAV+ + G+ + L +G ATNNVAEY+AL++GL+
Sbjct: 67 QAFAATLYADGGARGNPGPAGAGAVIYDQSGAQIAALSRYLGQATNNVAEYQALLMGLEA 126
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+ G I V+ DS+L+ Q+ G +++ +L L ++AK L ++F I H+ R N
Sbjct: 127 ALELGVGQIDVRLDSELLVKQLGGQYQVKAPHLKPLFQKAKALLQQFTGAHIVHVRREQN 186
Query: 291 SEADAQANMGI 301
AD AN +
Sbjct: 187 GVADGLANQAM 197
>gi|392417072|ref|YP_006453677.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
gi|390616848|gb|AFM17998.1| fructose-2,6-bisphosphatase [Mycobacterium chubuense NBB4]
Length = 369
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGFGAVVWSADHRSILAETSSAIGRATNNVAEYRGLIAGLQAASE 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G W++ + +LA L ++A+++ F I R+ NS A
Sbjct: 63 VGATEADVYMDSKLVVEQMAGRWRVKHPDLAPLHQQARDIANTFDRISYTWIPRDKNSHA 122
Query: 294 DAQANMGIYLKDGQV 308
D AN + + G+V
Sbjct: 123 DGLANKAMDVAAGEV 137
>gi|433439806|ref|ZP_20408470.1| ribonuclease H [Haloferax sp. BAB2207]
gi|448572792|ref|ZP_21640553.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|448597014|ref|ZP_21654152.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
gi|432188378|gb|ELK45576.1| ribonuclease H [Haloferax sp. BAB2207]
gi|445719564|gb|ELZ71243.1| ribonuclease H [Haloferax lucentense DSM 14919]
gi|445740895|gb|ELZ92400.1| ribonuclease H [Haloferax alexandrinus JCM 10717]
Length = 197
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|86157150|ref|YP_463935.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773661|gb|ABC80498.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C]
Length = 168
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 176 CTLEF-DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ 233
CT F DGA++GNPG AGAGAV+ DG V ++ + +G +TNNVAEY LILGLK A
Sbjct: 37 CTRLFTDGAARGNPGPAGAGAVIVNADGHIVAKIGKFLGDSTNNVAEYMGLILGLKRAKA 96
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V DS+L+ Q+ G + + +L L EA+ L F Q+ H+ R N+ A
Sbjct: 97 MGIKELEVLSDSELMVKQLAGDYAVKADHLRPLHDEAQALIAGFDRIQVRHVPREENALA 156
Query: 294 DAQANMGI 301
DA +N I
Sbjct: 157 DAMSNRAI 164
>gi|453074656|ref|ZP_21977448.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
gi|452764266|gb|EME22537.1| bifunctional RNase H/acid phosphatase [Rhodococcus triatomae BKS
15-14]
Length = 366
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVL-RAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ A+ G+V R +G+GIATNNVAEY LI GL A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVFDADTGAVLAERCDGLGIATNNVAEYNGLIAGLSAAAELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + + DSKLV Q+ G WK+ + ++ L + A+E+ + F I R N+ AD
Sbjct: 65 AEVVDARMDSKLVVEQMSGRWKVKHPDMIPLARRAREIADGFARVTYTWIPRAENAHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|448543301|ref|ZP_21624870.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|448550187|ref|ZP_21628710.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
gi|448559541|ref|ZP_21633615.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445706845|gb|ELZ58718.1| ribonuclease H [Haloferax sp. ATCC BAA-646]
gi|445710931|gb|ELZ62726.1| ribonuclease H [Haloferax sp. ATCC BAA-644]
gi|445711962|gb|ELZ63748.1| ribonuclease H [Haloferax sp. ATCC BAA-645]
Length = 197
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSDGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLIVKQVRGDWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|333918915|ref|YP_004492496.1| phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
gi|333481136|gb|AEF39696.1| Phosphoglycerate mutase [Amycolicicoccus subflavus DQS3-9A1]
Length = 360
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAV-LRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV L +D +V R + +GIATNNVAEY LI GL+ A +
Sbjct: 1 MIIEADGGSRGNPGPAGYGAVVLDPDDRTVLAERKQAIGIATNNVAEYSGLIAGLEAATE 60
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V+ DSKLV Q+ G WK+ + ++ L + A EL + F + + R N+ A
Sbjct: 61 VGAHEAEVRMDSKLVVEQMSGRWKVKHPDMIPLARRAAELAQAFSHVEYRWVPRADNAHA 120
Query: 294 DAQAN 298
D AN
Sbjct: 121 DRLAN 125
>gi|429731084|ref|ZP_19265725.1| ribonuclease HI [Corynebacterium durum F0235]
gi|429146467|gb|EKX89520.1| ribonuclease HI [Corynebacterium durum F0235]
Length = 371
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGY 236
++ DG S+GNPG AG+G VL G+V + + VG ATNNVAEYRAL+ GL+ A G
Sbjct: 5 IKADGGSRGNPGIAGSGTVLYDASGTVLTSIADYVGTATNNVAEYRALLNGLEAARDLGA 64
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ V DSKLV Q+ G WKI + ++ L +A+ + F I R NSEADA
Sbjct: 65 TEVEVLMDSKLVVEQMSGRWKIKHPDMKELALKAQAIARDFDVISYTWIPRAENSEADAL 124
Query: 297 ANMGI 301
AN +
Sbjct: 125 ANQAM 129
>gi|392375794|ref|YP_003207627.1| RNase H [Candidatus Methylomirabilis oxyfera]
gi|258593487|emb|CBE69826.1| RNase H [Candidatus Methylomirabilis oxyfera]
Length = 160
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 6/143 (4%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYR 222
L+T P + + DGA++GNPG AG G +L AEDG + R + +G ATNNVAEY+
Sbjct: 7 LDTGQAPPGLH-LVIHIDGAARGNPGPAGIGVMLEAEDGLLRRTFYQYIGKATNNVAEYK 65
Query: 223 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS--- 279
AL+L L+ A + ++++ DS+L+ Q+QG +++ + LA L +A L + +
Sbjct: 66 ALLLSLREAEKLQPAVVKIRSDSELLVRQVQGRYRVKSPRLAELYTQALNLMHQLSTASC 125
Query: 280 -FQINHILRNLNSEADAQANMGI 301
+ HI R LN +ADA AN I
Sbjct: 126 RLSVEHIGRELNRQADALANRAI 148
>gi|357019521|ref|ZP_09081774.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
gi|356480694|gb|EHI13809.1| bifunctional RNase H/acid phosphatase [Mycobacterium
thermoresistibile ATCC 19527]
Length = 365
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A+ G V ++ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVYSADSGEVLAETKQSIGRATNNVAEYRGLIAGLEQAAR 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G W++ + +L L ++AK L +F + R NS A
Sbjct: 63 VGATEVEVRMDSKLVVEQMAGRWRVKHPDLQPLSQQAKTLAARFGRVSYRWVPRAENSRA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|448317589|ref|ZP_21507139.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
gi|445602980|gb|ELY56950.1| ribonuclease H [Natronococcus jeotgali DSM 18795]
Length = 197
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ DG V E +G TNN AEY ALI L+ A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDGIVAEGSERIGRTTNNRAEYEALITALEAAAEYGYGEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L A+EL +F + + ++ R +N AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELRERRVAARELLSRFDEWTLEYVPREVNDRADGLAN 191
>gi|406904481|gb|EKD46245.1| ribonuclease HI [uncultured bacterium]
Length = 136
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 171 YNCYSCTLEFDGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLK 229
Y YS DG ++GNPG+A G +++ + G ++YRL + +GIATNN AEY ALI GLK
Sbjct: 2 YQMYS-----DGGARGNPGRAATGIIIKDQTGKTLYRLSKYLGIATNNQAEYAALIQGLK 56
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
+ QKG K + DS+LV Q+ GL++I +Q + ++ L KF+ HI R
Sbjct: 57 FLTQKGIKIVACYLDSELVVRQLNGLYRIKDQKIKEKYQQLSLLISKFKKVTFKHIYREN 116
Query: 290 NSEADAQAN 298
N EAD N
Sbjct: 117 NVEADKLVN 125
>gi|408791409|ref|ZP_11203019.1| ribonuclease HI [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408462819|gb|EKJ86544.1| ribonuclease HI [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 137
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG+S+GNPG A G + DG + L E +G ATNNVAE++AL G++ A+ + + I
Sbjct: 12 DGSSRGNPGPAAIGVSFQNNDGVEFFFLSEKIGNATNNVAEWQALYRGMEEAINQNLQKI 71
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R + DS+LV Q++G +K+ N++L + LK FQ+F+I +I R NS AD AN+
Sbjct: 72 RFRLDSELVVKQMKGEYKVKNKDLLVFKTKCDTLKSSFQNFEIQYIPREQNSRADQLANL 131
Query: 300 GIYLKD 305
KD
Sbjct: 132 AQDKKD 137
>gi|387875463|ref|YP_006305767.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|443305225|ref|ZP_21035013.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
gi|386788921|gb|AFJ35040.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. MOTT36Y]
gi|442766789|gb|ELR84783.1| bifunctional RNase H/acid phosphatase [Mycobacterium sp. H4Y]
Length = 379
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL--REGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|379761544|ref|YP_005347941.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
gi|378809486|gb|AFC53620.1| phosphoglycerate mutase [Mycobacterium intracellulare MOTT-64]
Length = 379
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL--REGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELNAQARALAARFDRISYSWIPRERNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|406030331|ref|YP_006729222.1| bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
gi|405128878|gb|AFS14133.1| Bifunctional RNase H/acid phosphatase [Mycobacterium indicus pranii
MTCC 9506]
Length = 379
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL--REGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|145595869|ref|YP_001160166.1| phosphoglycerate mutase [Salinispora tropica CNB-440]
gi|145305206|gb|ABP55788.1| Phosphoglycerate mutase [Salinispora tropica CNB-440]
Length = 412
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG GAVLR + G+ L E +G ATNNVAEYR LI GL+ A+
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVLR-DPGTGEVLAERSAAIGTATNNVAEYRGLIAGLEAAV 64
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
+ G + + DSKLV Q+ G W+I N L L +A L ++F + + I RN N
Sbjct: 65 ELGAAEVEARLDSKLVVEQMCGRWQIKNPGLRPLAAQAARLVDQFTAVRFTWIPRNRN 122
>gi|383776499|ref|YP_005461065.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
gi|381369731|dbj|BAL86549.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Actinoplanes missouriensis 431]
Length = 369
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV++ A G + R + G+ TNNVAEY LI GL+ A +
Sbjct: 5 VIVEADGGSRGNPGPAGFGAVVKEAATGEILLERYDSAGVTTNNVAEYSGLIAGLRAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ V+ DSKLV Q+ G W+I N L L EA L KF + I R N +A
Sbjct: 65 LNATRVDVRMDSKLVIEQMSGRWQIKNAGLRPLAAEAATLVGKFDEVTFDWIPRERNKDA 124
Query: 294 DAQAN 298
DA AN
Sbjct: 125 DALAN 129
>gi|296166119|ref|ZP_06848564.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898528|gb|EFG78089.1| phosphoglycerate mutase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 364
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ AED S + ++ +G ATNNVAEYR L+ GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWAEDRSTALAETKQAIGHATNNVAEYRGLLAGLDDALR 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A++L +F I R+ NS A
Sbjct: 63 VGATEAAVFLDSKLLVEQMSGRWKVKHPDLVELHGQARKLAARFDRISYTWIPRDRNSYA 122
Query: 294 D 294
D
Sbjct: 123 D 123
>gi|409730081|ref|ZP_11271676.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|448723224|ref|ZP_21705748.1| ribonuclease H [Halococcus hamelinensis 100A6]
gi|445787966|gb|EMA38692.1| ribonuclease H [Halococcus hamelinensis 100A6]
Length = 196
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
+CY FDGAS+GNPG A G V+ G V E +G TNN AEY AL+ L+ A
Sbjct: 70 HCY-----FDGASRGNPGPAAVGWVIVDSSGIVTEGSERIGETTNNRAEYEALLRVLELA 124
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G+ + ++GDS+LV Q++G W N+ L A+EL + F + I H+ R +N
Sbjct: 125 REYGFSTVDIRGDSQLVVEQVRGAWDTNDPGLRERRVRARELLDGFDEWSIEHVPREVNE 184
Query: 292 EADAQAN 298
AD AN
Sbjct: 185 RADRLAN 191
>gi|388494996|gb|AFK35564.1| unknown [Lotus japonicus]
Length = 70
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 49/63 (77%)
Query: 247 LVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDG 306
LVC Q+QGLWKI NQN+A LC EAKELK KF SF+INHI R NSEAD QAN GI + G
Sbjct: 2 LVCNQVQGLWKIENQNIASLCSEAKELKNKFLSFKINHIPREYNSEADVQANFGISFRAG 61
Query: 307 QVE 309
QVE
Sbjct: 62 QVE 64
>gi|338536844|ref|YP_004670178.1| ribonuclease H [Myxococcus fulvus HW-1]
gi|337262940|gb|AEI69100.1| ribonuclease H [Myxococcus fulvus HW-1]
Length = 212
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAVL G+V R+ +G TNN AEY L+LGLK+A G + +
Sbjct: 87 DGAARGNPGPAGAGAVLMDPTGNVVARVGRFLGHQTNNCAEYMGLLLGLKHAQSLGAREV 146
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G +++ + L L +EA++L + F +++H+ R N+EAD +N
Sbjct: 147 DVYADSELLIRQLGGRYQVKSATLKPLYEEARKLLKGFAKVKLHHVPRAQNAEADEMSNR 206
Query: 300 GI 301
I
Sbjct: 207 AI 208
>gi|433648622|ref|YP_007293624.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
gi|433298399|gb|AGB24219.1| fructose-2,6-bisphosphatase [Mycobacterium smegmatis JS623]
Length = 362
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG G V+ D + + ++ +G ATNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGLVVWTADRTAVLAESKQAIGSATNNVAEYRGLIAGLEEAAK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + ++A L ++A L +F+ I R NS A
Sbjct: 63 IGATEVDVSMDSKLVVEQMSGRWKVKHPDIAALHQQATALSARFEHITYTWIPRAKNSHA 122
Query: 294 DAQANMGIYLKDGQVEAECSS 314
D AN + D E E +
Sbjct: 123 DRLANEAM---DAATEIEAPA 140
>gi|448582205|ref|ZP_21645709.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
gi|445731853|gb|ELZ83436.1| ribonuclease H [Haloferax gibbonsii ATCC 33959]
Length = 197
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + +G V + +G TNN AEY AL+ L A + GY I
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+LV Q++G W N+ L +A+EL F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLVVKQVRGEWNTNDPGLKERRVKARELLSAFDRWSLEHVPREINDRADSLAN 191
>gi|421098044|ref|ZP_15558720.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
gi|410798960|gb|EKS01044.1| ribonuclease HI [Leptospira borgpetersenii str. 200901122]
Length = 129
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKDDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 VYMDSELVVRQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|288573975|ref|ZP_06392332.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569716|gb|EFC91273.1| ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 195
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 180 FDGASKGNPGQAGAGAVL-RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDG S+GNPG AGAGA L E+ V+R E +G TNN AEY A IL LK L++G
Sbjct: 7 FDGGSRGNPGIAGAGAALYDDENRLVWRGAEPLGERTNNEAEYMAAILVLKEVLRRGLSE 66
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I + GDSKLV Q+ G WKI L L +E K L K S + + R NSEAD AN
Sbjct: 67 IELCGDSKLVINQLSGAWKIKEPRLGVLAEEFKALA-KGLSVRFRWVPRKDNSEADRMAN 125
Query: 299 MGI 301
+ +
Sbjct: 126 LAM 128
>gi|448411566|ref|ZP_21575967.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445670138|gb|ELZ22742.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 197
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG + G V+ DG V +G ATNN AEY ALI G+ A G I
Sbjct: 73 FDGACRGNPGPSAVGWVIVGGDGIVAEGGHTIGRATNNQAEYEALIEGVSVARDYGLDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ +L +EL F+S+ + H+ R +N AD AN
Sbjct: 133 DVRGDSELIVKQVRGEWDTNDPDLREYRVTVRELLTDFESWSLEHVPREINDRADDLAN 191
>gi|118396396|ref|XP_001030538.1| RNase H family protein [Tetrahymena thermophila]
gi|89284845|gb|EAR82875.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 693
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYALQK 234
+EFDG SKGNPG AG G +++ + + L VG TNN +EY ALI GL +L+
Sbjct: 561 IEFDGCSKGNPGLAGVGFLIKQHENNSQVLESFAVNVGTKTNNQSEYLALIYGLYVSLKI 620
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + +QGDS+L+ Q+ G + +N N+ + K L+ KFQ NH+ R N EAD
Sbjct: 621 GIQKLFIQGDSQLIIYQMTGKYNCSNDNIKKYYELCKMLQSKFQQTSFNHVYREQNKEAD 680
Query: 295 AQANMGI 301
+N+ I
Sbjct: 681 HLSNVAI 687
>gi|324998690|ref|ZP_08119802.1| bifunctional RNase H/acid phosphatase [Pseudonocardia sp. P1]
Length = 392
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ G+ + + +G+G ATNNVAEYR LI GL A +
Sbjct: 12 LVVEADGGSRGNPGPAGYGAVVLDAGGTQVLAEVYDGLGTATNNVAEYRGLIAGLTAARE 71
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + DSKLV Q+ G WKI N L L A++ F + I R N+ A
Sbjct: 72 LGATEVDARLDSKLVVEQMSGRWKIKNTALQELADTARDQAAGFDAVTFTWIPRADNARA 131
Query: 294 DAQAN 298
DA AN
Sbjct: 132 DALAN 136
>gi|448456849|ref|ZP_21595505.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
gi|445811446|gb|EMA61453.1| ribonuclease H [Halorubrum lipolyticum DSM 21995]
Length = 198
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG AG G L DG V E +G ATNN AEY ALI L+ A + G+ I
Sbjct: 73 FDGASRGNPGPAGVGWCLVTSDGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +EL +F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLARFDRWSIGHVPREINERADDLAN 191
>gi|300712184|ref|YP_003737998.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|448295873|ref|ZP_21485936.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|299125867|gb|ADJ16206.1| ribonuclease H [Halalkalicoccus jeotgali B3]
gi|445583302|gb|ELY37634.1| ribonuclease H [Halalkalicoccus jeotgali B3]
Length = 197
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 66/121 (54%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDG S+GNPG A G VL + DG V E +G TNN AEY AL GL+ A + G+
Sbjct: 71 LYFDGGSRGNPGPAAIGWVLVSSDGIVAEGNERIGETTNNRAEYEALARGLEVAREYGFD 130
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+GDS+LV Q++G W N+ + EL F + I H+ R +N AD
Sbjct: 131 AVEVRGDSQLVVKQVRGEWDANDPGMRERRVRVHELLSAFPEWSIAHVPREINERADELV 190
Query: 298 N 298
N
Sbjct: 191 N 191
>gi|300087256|ref|YP_003757778.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526989|gb|ADJ25457.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 133
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS+GNPG A G ++++ G V + + +G TNN AEYRA+I L+ + ++G H+
Sbjct: 9 DGASRGNPGAAALGVIIKSGQGEVVKEISLCLGRLTNNQAEYRAVIAALEESGRQGATHL 68
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
R+ DS+LV Q+ G++++ N LA L KEL+++F+ H+ R N EADA AN
Sbjct: 69 RINADSELVVKQLNGIYRVKNPGLAPLALRVKELEKRFEKVIYCHVPRERNREADALANR 128
Query: 300 GI 301
+
Sbjct: 129 AL 130
>gi|258450521|gb|ACV72190.1| ribonuclease H [uncultured organism]
Length = 161
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQ 233
S L DGAS+ NPG A G VL+ G + E +G TNNVAEYRAL+ GL+ A
Sbjct: 29 SAILWSDGASRNNPGPAAIGVVLKRPTGELLASDAEYIGKTTNNVAEYRALLRGLERARA 88
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
G +++ V+ DS+L+ Q+QG +++ N L L +EAKE F S ++ H+ R LN+E
Sbjct: 89 LGVRNLEVRADSELLIRQLQGQYRVKNAALKPLWEEAKERLSHFASVRLKHVRRELNTE 147
>gi|183983294|ref|YP_001851585.1| bifunctional RNase H/acid phosphatase [Mycobacterium marinum M]
gi|443491565|ref|YP_007369712.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
gi|183176620|gb|ACC41730.1| conserved hypothetical protein [Mycobacterium marinum M]
gi|442584062|gb|AGC63205.1| Histidine phosphatase [Mycobacterium liflandii 128FXT]
Length = 374
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + +L L +A+EL +F+ I R N+ A
Sbjct: 63 LGATEVSVLMDSKLVVEQMCGRWKVKHPDLVELHGQARELAGQFRRISYAWIPRARNAHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|118617021|ref|YP_905353.1| bifunctional RNase H/acid phosphatase [Mycobacterium ulcerans
Agy99]
gi|118569131|gb|ABL03882.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 374
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VIIEADGGSRGNPGPAGYGAVVWTADRSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + +L L +A+EL +F+ I R N+ A
Sbjct: 63 LGATEVSVLMDSKLVVEQMCGRWKVKHPDLVELHGQARELAGQFRRISYAWIPRARNAHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DQLAN 127
>gi|15827864|ref|NP_302127.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae TN]
gi|221230341|ref|YP_002503757.1| bifunctional RNase H/acid phosphatase [Mycobacterium leprae Br4923]
gi|3150239|emb|CAA19219.1| hypothetical protein MLCB1243.38 [Mycobacterium leprae]
gi|13093416|emb|CAC30588.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933448|emb|CAR71732.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length = 371
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYRALI GL A++ G
Sbjct: 5 IEADGGSRGNPGPAGYGAVVWIADRSAVLTETKQAIGRATNNVAEYRALIAGLDDAVKMG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
V DSKLV Q+ G WK+ + +L L A+ L + S I R NS AD
Sbjct: 65 ATEAEVLMDSKLVVEQMSGRWKVKHPDLIELYVHAQTLASRLASVSYTWIPRTRNSRADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|363423455|ref|ZP_09311520.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
gi|359731704|gb|EHK80740.1| bifunctional RNase H/acid phosphatase [Rhodococcus pyridinivorans
AK37]
Length = 385
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLREG-VGIATNNVAEYRALILGLKYAL 232
+ +E DG S+GNPG AG GAV+ A+ +V R+ +G ATNNVAEY+ LI GL A
Sbjct: 3 TVVVEADGGSRGNPGPAGYGAVVFDADHRTVLAERQASIGRATNNVAEYKGLIAGLTAAA 62
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V+ DSKLV Q+ G W++ + ++ L +A+EL +F+S I R N+
Sbjct: 63 ELGADEVHVRMDSKLVVEQMSGRWQVKHADMIPLAAQARELAGRFRSVDFTWIPRAENAH 122
Query: 293 AD 294
AD
Sbjct: 123 AD 124
>gi|435848098|ref|YP_007310348.1| ribonuclease HI [Natronococcus occultus SP4]
gi|433674366|gb|AGB38558.1| ribonuclease HI [Natronococcus occultus SP4]
Length = 197
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ DG V + +G ATNN AEY ALI L+ A + Y +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDGIVAEGNDRIGTATNNQAEYAALITALEAAAEYDYDEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G + NN L A+EL +F + + ++ R +N AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELRERRVTARELLSRFDEWSLEYVPREVNDRADGLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|118380541|ref|XP_001023434.1| RNase H family protein [Tetrahymena thermophila]
gi|89305201|gb|EAS03189.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 288
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 74/126 (58%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDGASK NPG +G G + D +Y+ G TNN AEY AL+ GLK +L G +
Sbjct: 144 LFFDGASKNNPGPSGIGFAIFDNDQKLYQQAIHTGFKTNNQAEYLALLYGLKSSLSLGIE 203
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V GDS+L+ Q+ L+++ ++NL E K+L+ +F+ +I R NS AD+ A
Sbjct: 204 FLNVYGDSQLIINQMNNLYRVKDRNLILYNGECKQLRTQFKHVNFKYIPREQNSLADSLA 263
Query: 298 NMGIYL 303
N G+ L
Sbjct: 264 NKGVTL 269
>gi|448561164|ref|ZP_21634516.1| ribonuclease H [Haloferax prahovense DSM 18310]
gi|445721396|gb|ELZ73064.1| ribonuclease H [Haloferax prahovense DSM 18310]
Length = 197
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + +G V + +G TNN AEY AL+ L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTSNGIVAEGSKRIGETTNNRAEYEALVEALSVAEEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+LV Q++G WK N+ L +A+E F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSQLVVKQVRGEWKTNDPGLRERRVKAREHLSTFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|395225347|ref|ZP_10403873.1| ribonuclease HI [Thiovulum sp. ES]
gi|394446521|gb|EJF07343.1| ribonuclease HI [Thiovulum sp. ES]
Length = 157
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 180 FDGASKGNPGQAGAG-AVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS GNPG+ G G A+L + D +Y+ E +G TNN AEY ALIL L+ AL+ G +
Sbjct: 38 FDGASSGNPGKIGVGFAILNSSDEVIYQRGEVIGTGTNNEAEYFALILLLETALKNGVEK 97
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + GDSKLV Q+ G WK+ +NL + AK+ +K +F I+ I R+ N+ AD+
Sbjct: 98 MEIFGDSKLVVEQVSGRWKVKAENLKPFSEIAKDRFKK-GNFSISWIRRDKNTLADS 153
>gi|254822754|ref|ZP_05227755.1| bifunctional RNase H/acid phosphatase [Mycobacterium intracellulare
ATCC 13950]
Length = 159
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL--REGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRATVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGASEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAQARALAARFDRISYSWIPRERNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|448467480|ref|ZP_21599492.1| ribonuclease H [Halorubrum kocurii JCM 14978]
gi|445812356|gb|EMA62350.1| ribonuclease H [Halorubrum kocurii JCM 14978]
Length = 198
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ I
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +EL ++F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLDRFDRWSIGHVPREINDRADDLAN 191
>gi|448313766|ref|ZP_21503478.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
gi|445597076|gb|ELY51154.1| ribonuclease H [Natronolimnobius innermongolicus JCM 12255]
Length = 197
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY I
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLEAASDYGYDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G + NN L EL +F+ + + ++ R +N AD N
Sbjct: 133 HIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLREFEEWTLEYVPREVNERADGLVN 191
>gi|448330824|ref|ZP_21520100.1| ribonuclease H [Natrinema versiforme JCM 10478]
gi|445610660|gb|ELY64429.1| ribonuclease H [Natrinema versiforme JCM 10478]
Length = 197
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L A E+ + F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELREKRVTAHEILQAFDEWTLEYVPREVNDRADGLVN 191
>gi|417781679|ref|ZP_12429428.1| ribonuclease HI [Leptospira weilii str. 2006001853]
gi|410778410|gb|EKR63039.1| ribonuclease HI [Leptospira weilii str. 2006001853]
Length = 129
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKDDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 VYMDSELVVRQVGGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|289432255|ref|YP_003462128.1| ribonuclease H [Dehalococcoides sp. GT]
gi|288945975|gb|ADC73672.1| ribonuclease H [Dehalococcoides sp. GT]
Length = 134
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAE-DGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS+GNPG A G L+ E + V + + +G ATNN AEY+AL+ GL+ A G K +
Sbjct: 9 DGASRGNPGPASIGVTLKDEKNNPVACISKAIGHATNNQAEYQALLAGLEKAASLGAKEL 68
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
++ DS+L+ QI+G +++ N+ L L +A L +F+ +QI +I R NSEADA AN
Sbjct: 69 EIRSDSELLVKQIKGEYRMKNEGLKPLFSKAVSLLGRFERYQIKYIPRAQNSEADALANK 128
Query: 300 GI 301
+
Sbjct: 129 AL 130
>gi|448661394|ref|ZP_21683631.1| ribonuclease H [Haloarcula californiae ATCC 33799]
gi|445758470|gb|EMA09780.1| ribonuclease H [Haloarcula californiae ATCC 33799]
Length = 173
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ FDG ++ NPG A G + E+ +G ATNN AEYRALI L+ A G+
Sbjct: 41 TIHFDGGARPNPGPAAIGCTVETEE-CYSEYSNTIGEATNNQAEYRALIRALEIAEDAGF 99
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ +GDS+L+ QI G W N+ L L + +EL + F F + H+ R N AD+Q
Sbjct: 100 DSVTAKGDSQLIVNQITGKWDTNDDTLKDLRDDVRELAQIFDRFNVEHVPREENETADSQ 159
Query: 297 A 297
+
Sbjct: 160 S 160
>gi|296270282|ref|YP_003652914.1| phosphoglycerate mutase [Thermobispora bispora DSM 43833]
gi|296093069|gb|ADG89021.1| Phosphoglycerate mutase [Thermobispora bispora DSM 43833]
Length = 440
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DGA++GNPG AG GAV++ +G V E +G+ATNNVAEYR LI GL+ L G
Sbjct: 10 VVEADGAARGNPGPAGYGAVVKDAEGRVLAETAEAIGVATNNVAEYRGLIAGLRALLGLG 69
Query: 236 Y--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + V+ DS+LV Q+ G WK+ ++ L L EA L +F+ + R N A
Sbjct: 70 AEGEPVEVRMDSRLVIEQMSGRWKVKHEGLRPLAAEAAGLARRFR-VTWTWVPREQNGHA 128
Query: 294 DAQANMGI 301
D AN +
Sbjct: 129 DRLANEAV 136
>gi|448400255|ref|ZP_21571322.1| ribonuclease H [Haloterrigena limicola JCM 13563]
gi|445667795|gb|ELZ20435.1| ribonuclease H [Haloterrigena limicola JCM 13563]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEGGETIGTATNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN +L EL F + + ++ R++N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPDLREKRVTVHELLAAFDEWTLEYVPRDVNERADGLVN 191
>gi|322369393|ref|ZP_08043958.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
gi|320551125|gb|EFW92774.1| ribonuclease H [Haladaptatus paucihalophilus DX253]
Length = 197
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDGAS+GNPG A G V+ DG +G ATNN AEY ALI GL+ A G+
Sbjct: 71 LYFDGASRGNPGPAATGWVIVTSDGIAAEGGTRIGRATNNQAEYEALIEGLETARDYGFD 130
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+GDS+L+ Q+ G WK NN L +EL E+F + + H+ R +N AD A
Sbjct: 131 SVDVKGDSQLIVKQVTGAWKTNNPELRERRVRVRELLEEFDKWSLKHVPREVNERADKLA 190
Query: 298 NMGIYLKDG 306
N L DG
Sbjct: 191 NEA--LDDG 197
>gi|379707921|ref|YP_005263126.1| putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
gi|374845420|emb|CCF62486.1| Putative phosphoglycerate mutase [Nocardia cyriacigeorgica GUH-2]
Length = 451
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL----REGVGIATNNVAEYRALILG 227
+ +E DG S+GNPG AG GAV+ D R+ E +G+ATNNVAEYR LI G
Sbjct: 3 SVREVIVEADGGSRGNPGPAGYGAVVF--DAGHSRILAERMEYLGVATNNVAEYRGLIAG 60
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A + G + + V+ DSKLV Q+ G WK+ + + L AK L F I R
Sbjct: 61 LEAAAELGAREVSVRMDSKLVVEQMSGRWKVKHAAMIPLADRAKRLVAGFDRVSFQWIPR 120
Query: 288 NLNSEADAQANMGIYLKDGQVEAECSS 314
N+ AD AN + + DG + E +
Sbjct: 121 AENAHADRLAN--VAMDDGGLVDEVRT 145
>gi|359726860|ref|ZP_09265556.1| ribonuclease HI [Leptospira weilii str. 2006001855]
Length = 178
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V +D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 56 DGASKGNPGPSSIGIVAYKDDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIH 115
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 116 VYMDSELVVRQVGGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 173
>gi|296119751|ref|ZP_06838305.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295966905|gb|EFG80176.1| phosphoglycerate mutase family protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 392
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G V+ A DGS L E V + +TNNVAEY L+ G++ A + G
Sbjct: 11 DGGSRGNPGVAGSGTVIYAADGSTI-LDEIVYVVGKKSTNNVAEYHGLLRGVERAAELGA 69
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DSKLV QI G WKI + ++ L EAK++ KF+SF ++ + R NS AD
Sbjct: 70 TEVEFYMDSKLVVEQINGRWKIKHPDMQRLAVEAKKIINKFESFSLDWVARGKNSVADKL 129
Query: 297 AN 298
+N
Sbjct: 130 SN 131
>gi|310823614|ref|YP_003955972.1| ribonuclease h [Stigmatella aurantiaca DW4/3-1]
gi|309396686|gb|ADO74145.1| Ribonuclease H [Stigmatella aurantiaca DW4/3-1]
Length = 205
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAVL G V R+ + +G TNN AEY L++GLK+A G K I
Sbjct: 80 DGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGLKHARGLGTKEI 139
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+L+ Q+ G +++ + L L +EA +L F ++ H+ R +N+EAD +N
Sbjct: 140 EIFADSELLIRQLGGRYQVKSPTLRPLYEEAVKLLNDFSRVKLVHVPREMNAEADEMSNR 199
Query: 300 GI 301
I
Sbjct: 200 AI 201
>gi|398337107|ref|ZP_10521812.1| ribonuclease HI [Leptospira kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 129
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 70/122 (57%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V D +++ E +G TNNVAE+ AL GL+ +++ +
Sbjct: 3 TIFCDGASKGNPGPSSIGVVAYDGDKEEFKISERIGETTNNVAEWTALKKGLEECIRRNF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DS+LV Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 63 LSVHAHMDSELVVRQVTGRYKVKHPNLLEYKKEVDKLVSSLQSFQITHVPREKNSVADKL 122
Query: 297 AN 298
AN
Sbjct: 123 AN 124
>gi|94967119|ref|YP_589167.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
gi|94549169|gb|ABF39093.1| ribonuclease H [Candidatus Koribacter versatilis Ellin345]
Length = 211
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++GNPG AG G VL E G V L +G TNNVAEY L+ L YA + G+K +
Sbjct: 22 DGGARGNPGPAGFGVVLEDERGQKVDALSGFLGHQTNNVAEYSGLLAALDYAQKHGFKAL 81
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+V DS+L+ QI+G +K+ + NL L A+ + F+I H LR N EADA AN
Sbjct: 82 KVVADSELLVKQIRGEYKVKSPNLLDLYSRARVMIRTLDWFRIEHTLRGGNKEADALAN 140
>gi|383817660|ref|ZP_09972967.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
gi|383340009|gb|EID18330.1| bifunctional RNase H/acid phosphatase [Mycobacterium phlei
RIVM601174]
Length = 358
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG ++GNPG AG GAV+ D + + +E +G TNNVAEYR LI GL+ A +
Sbjct: 3 VIVEADGGARGNPGPAGYGAVVWDADHARVLGERKEAIGHTTNNVAEYRGLIAGLEEAAR 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ N ++A L ++A L +F I R NS A
Sbjct: 63 LGATEVEVLMDSKLVVEQMSGRWKVKNPDIAKLHQQASALVGRFDRVSFTWIPRADNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|425454893|ref|ZP_18834618.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
gi|389804308|emb|CCI16811.1| Ribonuclease H like [Microcystis aeruginosa PCC 9807]
Length = 279
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMEIATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|425443694|ref|ZP_18823765.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
gi|389735879|emb|CCI00690.1| Ribonuclease H like [Microcystis aeruginosa PCC 9443]
Length = 279
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMEIATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|425460773|ref|ZP_18840254.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
gi|389826515|emb|CCI22922.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9808]
Length = 279
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRYMEIATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|284165858|ref|YP_003404137.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
gi|284015513|gb|ADB61464.1| ribonuclease H [Haloterrigena turkmenica DSM 5511]
Length = 197
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 65/119 (54%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GLK A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLKAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G + NN L EL F + + ++ R +N AD N
Sbjct: 133 HIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLGAFDEWTLEYVPREVNERADGLVN 191
>gi|410941364|ref|ZP_11373163.1| ribonuclease HI [Leptospira noguchii str. 2006001870]
gi|410783923|gb|EKR72915.1| ribonuclease HI [Leptospira noguchii str. 2006001870]
Length = 129
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + + +
Sbjct: 3 TIYCDGASKGNPGPSSVGVVAYVHEKEEFRISERIGETTNNVAEWSALKRGIEECISRKF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I DS+LV Q+ G +K+ + NL KE +L QSF+I H+ R NS AD
Sbjct: 63 NSIHAYMDSELVVKQVIGKYKVKHPNLLDYKKEVDKLVSSLQSFEITHVPREKNSVADKL 122
Query: 297 AN 298
AN
Sbjct: 123 AN 124
>gi|383458169|ref|YP_005372158.1| ribonuclease H [Corallococcus coralloides DSM 2259]
gi|380734174|gb|AFE10176.1| ribonuclease H [Corallococcus coralloides DSM 2259]
Length = 216
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVL-RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAVL AE V RL + +G TNN AEY L++GL++A G + +
Sbjct: 91 DGAARGNPGPAGAGAVLMNAEGAVVARLGKFLGHQTNNYAEYMGLLIGLQHAKSLGAREV 150
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G +++ + L L +EA++L F ++ H+ R N+EAD +N
Sbjct: 151 EVFADSELLIRQLGGKYQVKSPTLKPLFQEAQKLLATFGKVKLAHVPRAQNAEADEMSNR 210
Query: 300 GI 301
I
Sbjct: 211 AI 212
>gi|425452493|ref|ZP_18832310.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
gi|389765698|emb|CCI08487.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
7941]
Length = 279
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + IATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRYMEIATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|443659661|ref|ZP_21132410.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
gi|159029413|emb|CAO90789.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332679|gb|ELS47275.1| RNase H family protein [Microcystis aeruginosa DIANCHI905]
Length = 283
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G + IATNN AEY LI+GL+ A +
Sbjct: 15 SAVLYFDGGSRGNPGRAAGAAVIVLAEGKSLTTSRYMEIATNNEAEYTGLIIGLEKAQEL 74
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 75 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVAD 134
Query: 295 AQAN 298
A AN
Sbjct: 135 AAAN 138
>gi|115373690|ref|ZP_01460984.1| RNase H [Stigmatella aurantiaca DW4/3-1]
gi|115369237|gb|EAU68178.1| RNase H [Stigmatella aurantiaca DW4/3-1]
Length = 177
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GNPG AGAGAVL G V R+ + +G TNN AEY L++GLK+A G K I
Sbjct: 52 DGAARGNPGPAGAGAVLIEPGGQVVARIGKFLGQQTNNYAEYMGLLIGLKHARGLGTKEI 111
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+L+ Q+ G +++ + L L +EA +L F ++ H+ R +N+EAD +N
Sbjct: 112 EIFADSELLIRQLGGRYQVKSPTLRPLYEEAVKLLNDFSRVKLVHVPREMNAEADEMSNR 171
Query: 300 GI 301
I
Sbjct: 172 AI 173
>gi|456861162|gb|EMF79867.1| ribonuclease HI [Leptospira weilii serovar Topaz str. LT2116]
Length = 129
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V D +R+ E +G ATNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGIVAYKGDKEEFRISERIGEATNNVAEWASLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 AYMDSELVVRQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|397772844|ref|YP_006540390.1| ribonuclease H [Natrinema sp. J7-2]
gi|448340530|ref|ZP_21529501.1| ribonuclease H [Natrinema gari JCM 14663]
gi|397681937|gb|AFO56314.1| ribonuclease H [Natrinema sp. J7-2]
gi|445629963|gb|ELY83233.1| ribonuclease H [Natrinema gari JCM 14663]
Length = 197
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G +TNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTSTNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L +EL F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNDPDLREKRVTVRELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|238060393|ref|ZP_04605102.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
gi|237882204|gb|EEP71032.1| phosphoglycerate mutase [Micromonospora sp. ATCC 39149]
Length = 410
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAE-DGSVYRLR-EGVGIATNNVAEYRALILGLKYAL 232
+ +E DG S+GNPG AG GAV+R + G V R E +G ATNNVAEYR LI GL+ A
Sbjct: 5 TVVVEADGGSRGNPGPAGYGAVVRDQASGEVLAERSEAIGTATNNVAEYRGLIAGLEAAA 64
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
+ G + + DSKLV Q+ G W+I + L L +A L ++F + + I R N
Sbjct: 65 ELGAVEVDARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAALVDRFAAVRFQWIPRERN 122
>gi|448391653|ref|ZP_21566748.1| ribonuclease H [Haloterrigena salina JCM 13891]
gi|445665065|gb|ELZ17743.1| ribonuclease H [Haloterrigena salina JCM 13891]
Length = 197
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 65/119 (54%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELREKRVTVHELLGAFDEWTLEYVPREVNDRADGLVN 191
>gi|359685859|ref|ZP_09255860.1| ribonuclease HI [Leptospira santarosai str. 2000030832]
gi|410450525|ref|ZP_11304562.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|418744997|ref|ZP_13301339.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|418755779|ref|ZP_13311975.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|421113370|ref|ZP_15573814.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|422004282|ref|ZP_16351503.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|409963984|gb|EKO31884.1| ribonuclease HI [Leptospira santarosai str. MOR084]
gi|410015611|gb|EKO77706.1| ribonuclease HI [Leptospira sp. Fiocruz LV3954]
gi|410794000|gb|EKR91913.1| ribonuclease HI [Leptospira santarosai str. CBC379]
gi|410801144|gb|EKS07318.1| ribonuclease HI [Leptospira santarosai str. JET]
gi|417257082|gb|EKT86489.1| ribonuclease HI [Leptospira santarosai serovar Shermani str. LT
821]
gi|456874098|gb|EMF89423.1| ribonuclease HI [Leptospira santarosai str. ST188]
Length = 129
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ ++ +
Sbjct: 7 DGASKGNPGPSSIGIVAYQGDKEEFRISERIGETTNNVAEWTSLKKGLEECVRRKFESVH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 VYMDSELVVRQVIGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|398339296|ref|ZP_10523999.1| ribonuclease HI [Leptospira kirschneri serovar Bim str. 1051]
gi|418679418|ref|ZP_13240681.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418688388|ref|ZP_13249544.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418739797|ref|ZP_13296178.1| ribonuclease HI [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421088838|ref|ZP_15549657.1| ribonuclease HI [Leptospira kirschneri str. 200802841]
gi|421107412|ref|ZP_15567964.1| ribonuclease HI [Leptospira kirschneri str. H2]
gi|421131695|ref|ZP_15591874.1| ribonuclease HI [Leptospira kirschneri str. 2008720114]
gi|400320309|gb|EJO68180.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410002440|gb|EKO52958.1| ribonuclease HI [Leptospira kirschneri str. 200802841]
gi|410007428|gb|EKO61138.1| ribonuclease HI [Leptospira kirschneri str. H2]
gi|410356860|gb|EKP04156.1| ribonuclease HI [Leptospira kirschneri str. 2008720114]
gi|410737245|gb|EKQ81987.1| ribonuclease HI [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410752919|gb|EKR09891.1| ribonuclease HI [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 129
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V + +++ E +G TNNVAE+ AL G++ + + +
Sbjct: 3 TIFCDGASKGNPGPSSIGVVAYVHEKEEFKISERIGETTNNVAEWSALKRGIEECISRKF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I DS+LV Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 63 DSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLQSFQITHVPREKNSVADKL 122
Query: 297 AN 298
AN
Sbjct: 123 AN 124
>gi|418719322|ref|ZP_13278522.1| ribonuclease HI [Leptospira borgpetersenii str. UI 09149]
gi|410744475|gb|EKQ93216.1| ribonuclease HI [Leptospira borgpetersenii str. UI 09149]
Length = 129
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWTSLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 AYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|448302992|ref|ZP_21492942.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
gi|445593999|gb|ELY48166.1| ribonuclease H [Natronorubrum sulfidifaciens JCM 14089]
Length = 197
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 64/119 (53%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG A G V+ DG V E +G TNN AEY ALI L+ A GY +
Sbjct: 73 FDGACRGNPGPAATGWVIVTGDGIVAEGGERLGTTTNNQAEYAALISALETARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q+ G + NN L L EL F + + H+ R +N AD AN
Sbjct: 133 HIRGDSELIVKQVHGEYDTNNPELRELRVTVHELLTSFDEWTLEHVPREVNGRADRLAN 191
>gi|433590945|ref|YP_007280441.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|448334478|ref|ZP_21523653.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
gi|433305725|gb|AGB31537.1| ribonuclease HI [Natrinema pellirubrum DSM 15624]
gi|445619810|gb|ELY73327.1| ribonuclease H [Natrinema pellirubrum DSM 15624]
Length = 197
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNDPDLRENRVTVHELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|345004168|ref|YP_004807021.1| ribonuclease H [halophilic archaeon DL31]
gi|344319794|gb|AEN04648.1| ribonuclease H [halophilic archaeon DL31]
Length = 197
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ + DG + E +G ATNN AEY ALI L+ A G + +
Sbjct: 73 FDGGSRGNPGPAAVGWVIVSGDGILAEGGETIGRATNNQAEYAALIRVLEAAGDLGIEEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L EA+EL F + I H+ R +N AD A+
Sbjct: 133 DIRGDSQLIVKQVRGEWDTNDPELKQKRVEARELLIGFDRWDIEHVPREINERADELAD 191
>gi|448445089|ref|ZP_21590144.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
gi|445685395|gb|ELZ37749.1| ribonuclease H [Halorubrum saccharovorum DSM 1137]
Length = 198
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G L DG V E +G ATNN AEY ALI L+ A + G+ I
Sbjct: 73 FDGASRGNPGPAAVGWCLVTSDGIVAEGGERIGRATNNQAEYAALIRALEAADEYGFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLERFDRWSIGHVPREINDRADDLAN 191
>gi|422301806|ref|ZP_16389171.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
gi|389789176|emb|CCI14829.1| Ribonuclease H like [Microcystis aeruginosa PCC 9806]
Length = 279
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + IATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMEIATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWCWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|307104154|gb|EFN52409.1| hypothetical protein CHLNCDRAFT_13162, partial [Chlorella
variabilis]
Length = 125
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKGYKH 238
FDGASK NPG AG GAVL E V R+ + +G TNN AEY LI GL+ AL+ G +
Sbjct: 1 FDGASKRNPGPAGWGAVLYDEATGVSRMCQYMGDQHTNNQAEYAGLIAGLQAALELGCRR 60
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I QGD L+ + G W++ N+ L A L +F SFQ + R LN ADA +N
Sbjct: 61 IPGQGDRTLIIPAVLGDWQVKNEGLRPYHAAATALMHRFASFQARQVRRELNQAADALSN 120
Query: 299 MGI 301
I
Sbjct: 121 QAI 123
>gi|448385420|ref|ZP_21563926.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
gi|445656915|gb|ELZ09747.1| ribonuclease H [Haloterrigena thermotolerans DSM 11522]
Length = 197
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A GY +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEDGETIGTATNNQAEYEALIAGLEAARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNDPDLRENRVTVHELLRAFDEWTLEYVPREVNDRADGLVN 191
>gi|118466196|ref|YP_881419.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium 104]
gi|118167483|gb|ABK68380.1| phosphoglycerate mutase [Mycobacterium avium 104]
Length = 383
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D G+V ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARGLAARFDRISYSWIPRERNSHA 122
Query: 294 D 294
D
Sbjct: 123 D 123
>gi|269791797|ref|YP_003316701.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099432|gb|ACZ18419.1| ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 132
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS+GNPG AGAGA+L EDG V + RE +G TNN AEY ALI L+ A +G
Sbjct: 6 FDGASRGNPGPAGAGALLEDEDGRVVWEHREYLGRRTNNEAEYWALIALLEEARSRGIDR 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEADAQA 297
+ GDS+LV Q+ WKIN +L L + EL E SF+ I R N AD +
Sbjct: 66 LIAMGDSQLVVSQVTRKWKINMPHLRELARRVWELSEGMDVSFR--WIPREENRRADRLS 123
Query: 298 NMGI 301
N I
Sbjct: 124 NQAI 127
>gi|421122103|ref|ZP_15582389.1| ribonuclease HI [Leptospira interrogans str. Brem 329]
gi|410344870|gb|EKO96013.1| ribonuclease HI [Leptospira interrogans str. Brem 329]
Length = 146
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+ T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ +
Sbjct: 17 FLITIYCDGASKGNPGPSSIGIVAYIHEKEEFRISERIGETTNNVAEWSALKKGIEECIS 76
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS A
Sbjct: 77 RKFDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSVA 136
Query: 294 DAQAN 298
D AN
Sbjct: 137 DKLAN 141
>gi|448306240|ref|ZP_21496149.1| ribonuclease H [Natronorubrum bangense JCM 10635]
gi|445598654|gb|ELY52709.1| ribonuclease H [Natronorubrum bangense JCM 10635]
Length = 197
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 65/119 (54%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG A G V+ DG V E +G TNN AEY ALI L+ A GY +
Sbjct: 73 FDGACRGNPGPAATGWVIVTGDGIVAEGGERIGTTTNNQAEYAALISALETARDYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +N+ AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELREQRVTVHELLSAFDEWTLEHVPREINARADRLAN 191
>gi|150390743|ref|YP_001320792.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
gi|149950605|gb|ABR49133.1| ribonuclease H [Alkaliphilus metalliredigens QYMF]
Length = 135
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG S+GNPG+AG G ++ ++G+ R + + +G TNNV+EY+AL L+ AL G K +
Sbjct: 11 DGGSRGNPGEAGIGITIQDQEGNEVRAISQYIGDQTNNVSEYKALSRALEIALDMGIKRV 70
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
DS+LV Q++G +K+ N+ + + L +KF+SF I H+ R N AD AN+
Sbjct: 71 TCYLDSELVVKQVKGQYKVKNERMIPMYNMVMPLVKKFESFAIEHVRREQNKRADELANI 130
Query: 300 GI 301
+
Sbjct: 131 AM 132
>gi|383788536|ref|YP_005473105.1| putative ribonuclease [Caldisericum exile AZM16c01]
gi|381364173|dbj|BAL81002.1| putative ribonuclease [Caldisericum exile AZM16c01]
Length = 132
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 70/107 (65%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS+GNPG++ +V + +Y + E +GIATNNVAEY+A++ ++ A ++ +K +
Sbjct: 7 DGASRGNPGESAISSVFVLDAKIIYVMSESIGIATNNVAEYKAILKSMEEARRRNFKSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
DS LV Q+ G++K+ +++L L +E K L+++F+S H+ R
Sbjct: 67 FFSDSLLVVSQLNGIYKVKSKDLFTLYEEVKNLEKEFESVSFVHVAR 113
>gi|183222197|ref|YP_001840193.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189912251|ref|YP_001963806.1| ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776927|gb|ABZ95228.1| Ribonuclease HI [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780619|gb|ABZ98917.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 137
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG+S+GNPG A G + +G + L E +G ATNNVAE+ AL G++ A+++ K I
Sbjct: 12 DGSSRGNPGPAAIGVSFQNNEGMEFHFLSEKIGNATNNVAEWNALSRGMEEAIRQSIKKI 71
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ + DS+LV Q++G +K+ N++L + +LK F+SF I +I R N+ AD AN
Sbjct: 72 KFRLDSELVVKQMKGEYKVKNKDLMVFKTKCDQLKNSFESFDIQYIPREQNARADQLANF 131
Query: 300 G 300
Sbjct: 132 A 132
>gi|433631347|ref|YP_007264975.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|433635296|ref|YP_007268923.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
gi|432162940|emb|CCK60332.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070010]
gi|432166889|emb|CCK64392.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070017]
Length = 364
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R NS A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNSYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|254774920|ref|ZP_05216436.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 383
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D G+V ++ +G ATNNVAEYR LI GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLIAGLDDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F + I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARGLAARFDRISYSWIPRERNSHA 122
Query: 294 D 294
D
Sbjct: 123 D 123
>gi|448346311|ref|ZP_21535197.1| ribonuclease H [Natrinema altunense JCM 12890]
gi|445632900|gb|ELY86106.1| ribonuclease H [Natrinema altunense JCM 12890]
Length = 197
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 67/119 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A Y +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEGGETIGTATNNQAEYEALITGLEAARDYDYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L +EL +F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNDPDLREKRVTVRELLREFDEWTLEYVPREVNDRADGLVN 191
>gi|418696118|ref|ZP_13257127.1| ribonuclease HI [Leptospira kirschneri str. H1]
gi|409955647|gb|EKO14579.1| ribonuclease HI [Leptospira kirschneri str. H1]
Length = 129
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V + +++ E +G TNNVAE+ AL G++ + + +
Sbjct: 3 TIFCDGASKGNPGPSSIGVVAYVHEKEEFKISERIGETTNNVAEWSALKRGIEECISRKF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I DS+L+ Q+ G +K+ + NL KE +L QSFQI H+ R NS AD
Sbjct: 63 DSIHAYMDSELIVKQVNGKYKVKHPNLLEYKKEVDKLISSLQSFQITHVPREKNSVADKL 122
Query: 297 AN 298
AN
Sbjct: 123 AN 124
>gi|116328421|ref|YP_798141.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331150|ref|YP_800868.1| ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116121165|gb|ABJ79208.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116124839|gb|ABJ76110.1| Ribonuclease HI [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 129
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
DS+LV Q+ G +K+ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 AYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVADKLAN 124
>gi|455791964|gb|EMF43749.1| ribonuclease HI [Leptospira interrogans serovar Lora str. TE 1992]
Length = 167
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+ T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ +
Sbjct: 38 FLITIYCDGASKGNPGPSSIGIVAYIHEKEEFRISERIGETTNNVAEWSALKKGIEECIS 97
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS A
Sbjct: 98 RKFDSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSVA 157
Query: 294 DAQAN 298
D AN
Sbjct: 158 DKLAN 162
>gi|429192471|ref|YP_007178149.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|448325883|ref|ZP_21515261.1| ribonuclease H [Natronobacterium gregoryi SP2]
gi|429136689|gb|AFZ73700.1| ribonuclease HI [Natronobacterium gregoryi SP2]
gi|445613975|gb|ELY67660.1| ribonuclease H [Natronobacterium gregoryi SP2]
Length = 196
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 67/121 (55%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L FDG ++GNPG A G V+ DG V E +G ATNN AEY ALI L+ A GY
Sbjct: 71 LYFDGGARGNPGPAAIGWVIVTGDGIVAEGSERIGRATNNQAEYAALIAVLEAARDYGYD 130
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
++++GDS+L+ Q++G + NN L EL F + I H+ R +N AD A
Sbjct: 131 EVQIRGDSELIVKQVRGEYDTNNPELREKRVTVHELLSSFDEWAIEHVPREVNERADELA 190
Query: 298 N 298
N
Sbjct: 191 N 191
>gi|24214672|ref|NP_712153.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
gi|386074057|ref|YP_005988374.1| ribonuclease H I [Leptospira interrogans serovar Lai str. IPAV]
gi|417760932|ref|ZP_12408946.1| ribonuclease HI [Leptospira interrogans str. 2002000624]
gi|417764207|ref|ZP_12412178.1| ribonuclease HI [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417769659|ref|ZP_12417574.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Pomona]
gi|417775522|ref|ZP_12423375.1| ribonuclease HI [Leptospira interrogans str. 2002000621]
gi|417783304|ref|ZP_12431024.1| ribonuclease HI [Leptospira interrogans str. C10069]
gi|418668784|ref|ZP_13230184.1| ribonuclease HI [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418673711|ref|ZP_13235024.1| ribonuclease HI [Leptospira interrogans str. 2002000623]
gi|418682977|ref|ZP_13244190.1| ribonuclease HI [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692605|ref|ZP_13253683.1| ribonuclease HI [Leptospira interrogans str. FPW2026]
gi|418700108|ref|ZP_13261052.1| ribonuclease HI [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704365|ref|ZP_13265243.1| ribonuclease HI [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710916|ref|ZP_13271682.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|418712242|ref|ZP_13272986.1| ribonuclease HI [Leptospira interrogans str. UI 08452]
gi|418726639|ref|ZP_13285250.1| ribonuclease HI [Leptospira interrogans str. UI 12621]
gi|418733546|ref|ZP_13290670.1| ribonuclease HI [Leptospira interrogans str. UI 12758]
gi|421085566|ref|ZP_15546417.1| ribonuclease HI [Leptospira santarosai str. HAI1594]
gi|421102664|ref|ZP_15563268.1| ribonuclease HI [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|421118893|ref|ZP_15579225.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421125374|ref|ZP_15585627.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|421137310|ref|ZP_15597397.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|24195657|gb|AAN49171.1| ribonuclease H I [Leptospira interrogans serovar Lai str. 56601]
gi|353457846|gb|AER02391.1| ribonuclease H I [Leptospira interrogans serovar Lai str. IPAV]
gi|400325536|gb|EJO77812.1| ribonuclease HI [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400353602|gb|EJP05767.1| ribonuclease HI [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400357838|gb|EJP13958.1| ribonuclease HI [Leptospira interrogans str. FPW2026]
gi|409942926|gb|EKN88529.1| ribonuclease HI [Leptospira interrogans str. 2002000624]
gi|409948364|gb|EKN98353.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Pomona]
gi|409953433|gb|EKO07932.1| ribonuclease HI [Leptospira interrogans str. C10069]
gi|409960549|gb|EKO24303.1| ribonuclease HI [Leptospira interrogans str. UI 12621]
gi|410009599|gb|EKO67758.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410018524|gb|EKO85362.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
Andaman]
gi|410367778|gb|EKP23162.1| ribonuclease HI [Leptospira interrogans serovar Icterohaemorrhagiae
str. Verdun LP]
gi|410431131|gb|EKP75491.1| ribonuclease HI [Leptospira santarosai str. HAI1594]
gi|410437281|gb|EKP86384.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410574847|gb|EKQ37876.1| ribonuclease HI [Leptospira interrogans str. 2002000621]
gi|410579372|gb|EKQ47220.1| ribonuclease HI [Leptospira interrogans str. 2002000623]
gi|410755516|gb|EKR17146.1| ribonuclease HI [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410760792|gb|EKR26986.1| ribonuclease HI [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766098|gb|EKR36787.1| ribonuclease HI [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410768516|gb|EKR43763.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
UI 08368]
gi|410773155|gb|EKR53186.1| ribonuclease HI [Leptospira interrogans str. UI 12758]
gi|410791344|gb|EKR85021.1| ribonuclease HI [Leptospira interrogans str. UI 08452]
gi|455666123|gb|EMF31585.1| ribonuclease HI [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|456821826|gb|EMF70332.1| ribonuclease HI [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456983418|gb|EMG19736.1| ribonuclease HI [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 129
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + + +
Sbjct: 3 TIYCDGASKGNPGPSSIGIVAYIHEKEEFRISERIGETTNNVAEWSALKKGIEECISRKF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R NS AD
Sbjct: 63 DSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKNSVADKL 122
Query: 297 AN 298
AN
Sbjct: 123 AN 124
>gi|418738770|ref|ZP_13295163.1| ribonuclease HI [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|421094378|ref|ZP_15555096.1| ribonuclease HI [Leptospira borgpetersenii str. 200801926]
gi|410362800|gb|EKP13835.1| ribonuclease HI [Leptospira borgpetersenii str. 200801926]
gi|410745468|gb|EKQ98378.1| ribonuclease HI [Leptospira borgpetersenii serovar Castellonis str.
200801910]
gi|456887975|gb|EMF98983.1| ribonuclease HI [Leptospira borgpetersenii str. 200701203]
Length = 129
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G V D +R+ E +G TNNVAE+ +L GL+ +++ + I
Sbjct: 7 DGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWTSLKKGLEECIRRKFDTIH 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
DS+LV Q+ G +++ + NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 67 AYMDSELVVKQVSGKYRVKHPNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 124
>gi|383823283|ref|ZP_09978488.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
gi|383339608|gb|EID17943.1| bifunctional RNase H/acid phosphatase [Mycobacterium xenopi
RIVM700367]
Length = 369
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG G V+ D S + ++ +G ATNNVAEYR LI GL A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGTVVWNADHSTVLAESKQAIGRATNNVAEYRGLIAGLDEAAK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G W++ + ++A L K A+ L KF + R NS A
Sbjct: 63 VGATDVTVLMDSKLVVEQMSGRWQVKHPDIAELYKRAQALASKFDRISYAWVPRERNSHA 122
Query: 294 D 294
D
Sbjct: 123 D 123
>gi|41408078|ref|NP_960914.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417746648|ref|ZP_12395141.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440777596|ref|ZP_20956394.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41396433|gb|AAS04297.1| hypothetical protein MAP_1980c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461839|gb|EGO40695.1| fructose-2,6-bisphosphatase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436722174|gb|ELP46181.1| bifunctional RNase H/acid phosphatase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 377
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVY-RLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D G+V ++ +G ATNNVAEYR L+ GL AL+
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTPDRGTVLAENKQAIGRATNNVAEYRGLLAGLGDALK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L +A+ L +F I R NS A
Sbjct: 63 LGATEAEVYLDSKLLVEQMSGRWKVKHPDLIELHAQARSLAARFDRISYTWIPRERNSHA 122
Query: 294 D 294
D
Sbjct: 123 D 123
>gi|374607259|ref|ZP_09680060.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
gi|373555095|gb|EHP81665.1| Phosphoglycerate mutase [Mycobacterium tusciae JS617]
Length = 361
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D + + ++ +G ATNNVAEY LI GL+ A +
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVWTADRNTVLAERKQAIGRATNNVAEYSGLIAGLEEAAK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + ++ L +EA L +F + R N A
Sbjct: 63 LGASEVDVNMDSKLVVEQMSGRWKVKHPDMVPLHQEATALSTRFDHVAYTWVPRAKNGHA 122
Query: 294 DAQANMGIYLKDGQVEAECSSFTK 317
D AN + D E E + K
Sbjct: 123 DRLANEAM---DAAAELETPAEAK 143
>gi|15609365|ref|NP_216744.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|15841722|ref|NP_336759.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CDC1551]
gi|31793409|ref|NP_855902.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis
AF2122/97]
gi|121638111|ref|YP_978335.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662048|ref|YP_001283571.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|148823436|ref|YP_001288190.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
F11]
gi|167969373|ref|ZP_02551650.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
H37Ra]
gi|224990605|ref|YP_002645292.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253798706|ref|YP_003031707.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 1435]
gi|254232381|ref|ZP_04925708.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254365024|ref|ZP_04981070.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551269|ref|ZP_05141716.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289443737|ref|ZP_06433481.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289447858|ref|ZP_06437602.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289570348|ref|ZP_06450575.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574915|ref|ZP_06455142.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289745502|ref|ZP_06504880.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289750825|ref|ZP_06510203.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289754337|ref|ZP_06513715.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|294993616|ref|ZP_06799307.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
210]
gi|297634820|ref|ZP_06952600.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN 4207]
gi|297731811|ref|ZP_06960929.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN R506]
gi|298525721|ref|ZP_07013130.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306776483|ref|ZP_07414820.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|306789374|ref|ZP_07427696.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|306793697|ref|ZP_07431999.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|306798089|ref|ZP_07436391.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|306808541|ref|ZP_07445209.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|306972595|ref|ZP_07485256.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|307084891|ref|ZP_07494004.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|313659145|ref|ZP_07816025.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
KZN V2475]
gi|339632255|ref|YP_004723897.1| hypothetical protein MAF_22400 [Mycobacterium africanum GM041182]
gi|340627233|ref|YP_004745685.1| hypothetical protein MCAN_22511 [Mycobacterium canettii CIPT
140010059]
gi|375295964|ref|YP_005100231.1| hypothetical protein TBSG_01763 [Mycobacterium tuberculosis KZN
4207]
gi|378771961|ref|YP_005171694.1| hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|383308027|ref|YP_005360838.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|385995190|ref|YP_005913488.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|385999004|ref|YP_005917303.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|392386871|ref|YP_005308500.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392432175|ref|YP_006473219.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|397674114|ref|YP_006515649.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|422813262|ref|ZP_16861637.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|424804566|ref|ZP_18229997.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|424947911|ref|ZP_18363607.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|433627347|ref|YP_007260976.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|433642416|ref|YP_007288175.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|449064287|ref|YP_007431370.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
gi|54040461|sp|P64956.1|Y2253_MYCBO RecName: Full=Uncharacterized protein Mb2253c
gi|54042871|sp|P64955.1|Y2228_MYCTU RecName: Full=Uncharacterized protein Rv2228c/MT2287
gi|13881979|gb|AAK46573.1| phosphoglycerate mutase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31619001|emb|CAD97106.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493759|emb|CAL72234.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601440|gb|EAY60450.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150538|gb|EBA42583.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148506200|gb|ABQ74009.1| hypothetical protein MRA_2247 [Mycobacterium tuberculosis H37Ra]
gi|148721963|gb|ABR06588.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773718|dbj|BAH26524.1| hypothetical protein JTY_2240 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253320209|gb|ACT24812.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289416656|gb|EFD13896.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289420816|gb|EFD18017.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CPHL_A]
gi|289539346|gb|EFD43924.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
K85]
gi|289544102|gb|EFD47750.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289686030|gb|EFD53518.1| phosphoglycerate mutase [Mycobacterium tuberculosis 02_1987]
gi|289691412|gb|EFD58841.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289694924|gb|EFD62353.1| phosphoglycerate mutase [Mycobacterium tuberculosis EAS054]
gi|298495515|gb|EFI30809.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308215119|gb|EFO74518.1| hypothetical protein TMAG_00419 [Mycobacterium tuberculosis
SUMu001]
gi|308334063|gb|EFP22914.1| hypothetical protein TMDG_00708 [Mycobacterium tuberculosis
SUMu004]
gi|308337869|gb|EFP26720.1| hypothetical protein TMEG_02598 [Mycobacterium tuberculosis
SUMu005]
gi|308341630|gb|EFP30481.1| hypothetical protein TMFG_01192 [Mycobacterium tuberculosis
SUMu006]
gi|308345037|gb|EFP33888.1| hypothetical protein TMGG_00788 [Mycobacterium tuberculosis
SUMu007]
gi|308357998|gb|EFP46849.1| hypothetical protein TMJG_00492 [Mycobacterium tuberculosis
SUMu010]
gi|308365550|gb|EFP54401.1| hypothetical protein TMLG_02717 [Mycobacterium tuberculosis
SUMu012]
gi|323719131|gb|EGB28276.1| hypothetical protein TMMG_01511 [Mycobacterium tuberculosis
CDC1551A]
gi|326903842|gb|EGE50775.1| hypothetical protein TBPG_01727 [Mycobacterium tuberculosis W-148]
gi|328458469|gb|AEB03892.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295144|gb|AEJ47255.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5079]
gi|339331611|emb|CCC27310.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
gi|340005423|emb|CCC44583.1| conserved hypothetical protein [Mycobacterium canettii CIPT
140010059]
gi|341602149|emb|CCC64823.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau
RDJ]
gi|344220051|gb|AEN00682.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CTRI-2]
gi|356594282|gb|AET19511.1| Hypothetical protein BCGMEX_2234c [Mycobacterium bovis BCG str.
Mexico]
gi|358232426|dbj|GAA45918.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
NCGM2209]
gi|378545422|emb|CCE37699.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379028508|dbj|BAL66241.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
str. Erdman = ATCC 35801]
gi|380721980|gb|AFE17089.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
RGTB327]
gi|392053584|gb|AFM49142.1| hypothetical protein TBXG_001734 [Mycobacterium tuberculosis KZN
605]
gi|395139019|gb|AFN50178.1| hypothetical protein RVBD_2228c [Mycobacterium tuberculosis H37Rv]
gi|432154953|emb|CCK52195.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140060008]
gi|432158964|emb|CCK56266.1| Multifunctional protein with RNase H, alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium canettii
CIPT 140070008]
gi|440581704|emb|CCG12107.1| hypothetical protein MT7199_2259 [Mycobacterium tuberculosis
7199-99]
gi|444895746|emb|CCP45006.1| Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase,
and acid phosphatase activities [Mycobacterium
tuberculosis H37Rv]
gi|449032795|gb|AGE68222.1| bifunctional RNase H/acid phosphatase [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 364
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|392943834|ref|ZP_10309476.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
gi|392287128|gb|EIV93152.1| fructose-2,6-bisphosphatase [Frankia sp. QA3]
Length = 378
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A DG+V R +G ATNNVAEY LI GL+ A +
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVRDAADGTVLAERAASIGHATNNVAEYSGLIAGLRAAAE 66
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ V+ DSKLV Q+ G WKI + + L EA L F + + + R N++
Sbjct: 67 IAPDAEVEVRMDSKLVVEQMSGRWKIKHPAMRPLADEAAGLARGFPAVRYQWVPRARNAD 126
Query: 293 AD 294
AD
Sbjct: 127 AD 128
>gi|289758350|ref|ZP_06517728.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
gi|289713914|gb|EFD77926.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
T85]
Length = 340
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|166368039|ref|YP_001660312.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
gi|166090412|dbj|BAG05120.1| ribonuclease H like [Microcystis aeruginosa NIES-843]
Length = 279
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R+ NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERSKNSLAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|425464734|ref|ZP_18844044.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
gi|389833173|emb|CCI22543.1| Ribonuclease H like [Microcystis aeruginosa PCC 9809]
Length = 279
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R+ NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERSKNSLAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|298711927|emb|CBJ48614.1| ribonuclease H [Ectocarpus siliculosus]
Length = 523
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVL----RAEDGSVYR-LREGVGIATNNVAEYRAL 224
P TL FDG +GNPG +GAGAV+ E S Y+ L EG TNN AEY ++
Sbjct: 40 PAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEG---KTNNEAEYESV 96
Query: 225 ILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQIN 283
ILGLK A + + V+GDS LV Q+ G W+++ L GL ++A E+ ++ Q +
Sbjct: 97 ILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWH 156
Query: 284 HILRNLNSEADAQANMGI 301
H+ R LN AD AN+ +
Sbjct: 157 HVPRKLNVRADLLANIAM 174
>gi|428216220|ref|YP_007089364.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
gi|428004601|gb|AFY85444.1| ribonuclease HI [Oscillatoria acuminata PCC 6304]
Length = 135
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQK 234
T+ DGAS+ NPG AGAGAVL E G++ ++ + +G TNN AEY+A ILGL+ AL+
Sbjct: 3 ITIYSDGASRRNPGPAGAGAVLLDEQGNILNKVCKYLGETTNNQAEYQAAILGLETALKM 62
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF-QINHILRNLNSEA 293
G ++++ DS+L+ Q+ G +++ L L + K L +F+S+ H+ R N+ A
Sbjct: 63 GATRVKLRADSELMVKQLLGQYRVKKPELKPLYDQVKSLFNQFESYAPPEHVRRADNALA 122
Query: 294 DAQANMGI 301
DA+AN I
Sbjct: 123 DAEANRAI 130
>gi|295321673|pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
gi|295321675|pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 141
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 63
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 64 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 123
Query: 294 DAQAN 298
D AN
Sbjct: 124 DRLAN 128
>gi|418050525|ref|ZP_12688611.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
gi|353188149|gb|EHB53670.1| Phosphoglycerate mutase [Mycobacterium rhodesiae JS60]
Length = 357
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG--VGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG G V+ + D G +G+ TNNVAEYR LI GL+ A G
Sbjct: 5 VEADGGSRGNPGPAGYGCVVWSADHQTVLAEHGTAIGVTTNNVAEYRGLIAGLEEARALG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V DSKLV Q+ G WK+ + +A L ++A+ L F S I R NS AD
Sbjct: 65 ANEVAVSMDSKLVVEQMTGRWKVKHPAMAELQQQARALASTFDSVTYEWIPREQNSYAD 123
>gi|365874504|ref|ZP_09414037.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
gi|363984591|gb|EHM10798.1| ribonuclease HI [Thermanaerovibrio velox DSM 12556]
Length = 145
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS+GNPG AGAGA+L + GSV + R +G TNN AEY+ALI L+ ++G +
Sbjct: 6 FDGASRGNPGVAGAGALLVDDGGSVIWEYRGFLGHRTNNEAEYQALIALLEEVRRRGIRS 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEADAQA 297
+ V GDS+LV Q+ G WKIN +L L +EL + SF+ I R N +AD +
Sbjct: 66 VLVMGDSQLVISQVTGKWKINMPHLRALASRVRELCRGLEVSFK--WIPREENRQADRLS 123
Query: 298 NMGIYLKD 305
N I +D
Sbjct: 124 NEAIDRRD 131
>gi|448419737|ref|ZP_21580581.1| ribonuclease H [Halosarcina pallida JCM 14848]
gi|445674651|gb|ELZ27188.1| ribonuclease H [Halosarcina pallida JCM 14848]
Length = 197
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V E +G TNN AEY ALI GL+ A + G++ +
Sbjct: 73 FDGASRGNPGPAAVGWAIVNSDGIVGEGSETIGETTNNRAEYEALIRGLEAAAEFGFEEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L +EL E+F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSELIVKQVRGEYDANNPELRERRVRVRELLERFDRWTLEHVPREINDRADSLAN 191
>gi|19553436|ref|NP_601438.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|62391077|ref|YP_226479.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 13032]
gi|418244137|ref|ZP_12870562.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|19110481|dbj|BAB85788.1| RNase HI [Corynebacterium glutamicum]
gi|21325007|dbj|BAB99629.1| Phosphoglycerate mutase/fructose-2,6-bisphosphatase
[Corynebacterium glutamicum ATCC 13032]
gi|41326416|emb|CAF20578.1| Ribonuclease HI [Corynebacterium glutamicum ATCC 13032]
gi|354511814|gb|EHE84718.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
ATCC 14067]
gi|385144336|emb|CCH25375.1| hypothetical protein WA5_2155 [Corynebacterium glutamicum K051]
Length = 382
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYA 231
+E DG S+GNPG AG+G V+ + D L+E VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYS-DNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAA 61
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 62 RELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLAIEAKEIASEIGSVSYTWIPREKNK 121
Query: 292 EADAQANMGI 301
ADA +N+ +
Sbjct: 122 RADALSNVAM 131
>gi|145296194|ref|YP_001139015.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
R]
gi|140846114|dbj|BAF55113.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 380
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYA 231
+E DG S+GNPG AG+G V+ + D L+E VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYS-DNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAA 61
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 62 RELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLALEAKEIASEIGSVSYTWIPREKNK 121
Query: 292 EADAQANMGI 301
ADA +N+ +
Sbjct: 122 RADALSNVAM 131
>gi|417971389|ref|ZP_12612315.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
gi|344044315|gb|EGV39993.1| bifunctional RNase H/acid phosphatase [Corynebacterium glutamicum
S9114]
Length = 382
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYA 231
+E DG S+GNPG AG+G V+ + D L+E VG ATNNVAEYR L+ GLK A
Sbjct: 3 LVIEADGGSRGNPGVAGSGTVVYS-DNKAEVLKEIAYVVGTKATNNVAEYRGLLEGLKAA 61
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + V DSKLV Q+ G WKI + ++ L EAKE+ + S I R N
Sbjct: 62 RELGATSVDVYMDSKLVVEQMSGRWKIKHPDMKVLAIEAKEIASEIGSVSYTWIPREKNK 121
Query: 292 EADAQANMGI 301
ADA +N+ +
Sbjct: 122 RADALSNVAM 131
>gi|86740144|ref|YP_480544.1| bifunctional RNase H/acid phosphatase [Frankia sp. CcI3]
gi|86567006|gb|ABD10815.1| Phosphoglycerate mutase [Frankia sp. CcI3]
Length = 378
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A G + R + +G ATNNVAEY LI GL+ A +
Sbjct: 7 LVIEADGGSRGNPGPAGYGAVVRDAGSGKLLAERADSIGRATNNVAEYSGLIAGLRAAAE 66
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ V+ DSKLV Q+ G WK+ + + L EA EL +F + + + R N++
Sbjct: 67 IAPDAELEVRMDSKLVVEQMSGRWKVKHPAMRPLVAEATELAARFPAVRFQWVPRARNAD 126
Query: 293 AD 294
AD
Sbjct: 127 AD 128
>gi|425440628|ref|ZP_18820926.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
gi|389718917|emb|CCH97212.1| Ribonuclease H like [Microcystis aeruginosa PCC 9717]
Length = 279
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVARFDRISWRWIERAKNSLAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|425437469|ref|ZP_18817884.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
gi|389677547|emb|CCH93523.1| Genome sequencing data, contig C320 [Microcystis aeruginosa PCC
9432]
Length = 279
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 11 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRYMERATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|440756017|ref|ZP_20935218.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
gi|440173239|gb|ELP52697.1| RNase H family protein [Microcystis aeruginosa TAIHU98]
Length = 283
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 15 SAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTSRYMERATNNEAEYTGLIIGLEKAQEL 74
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS AD
Sbjct: 75 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVTQFDRISWRWIERAKNSVAD 134
Query: 295 AQAN 298
A AN
Sbjct: 135 AAAN 138
>gi|271968069|ref|YP_003342265.1| fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
gi|270511244|gb|ACZ89522.1| Fructose-2 6-bisphosphatase-like protein [Streptosporangium roseum
DSM 43021]
Length = 452
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVY-RLREGVGIATNNVAEYRALILGLK--Y 230
S +E DG S+GNPG AG GAV++ A DG V E +G TNNVAEYR LI GL+
Sbjct: 3 SFVIEADGGSRGNPGPAGYGAVVKDAADGQVLVETAEAIGAQTNNVAEYRGLIAGLQSLL 62
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL + V+ DSKLV Q+ G WKI N+ L L EA L + + I R N
Sbjct: 63 ALAGDGAVVEVRMDSKLVIEQMAGRWKIKNEGLRPLALEAGALARRLR-VTWQWIPREKN 121
Query: 291 SEADAQAN 298
+AD AN
Sbjct: 122 KDADRLAN 129
>gi|376290862|ref|YP_005163109.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
gi|372104258|gb|AEX67855.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae C7 (beta)]
Length = 377
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A++
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAVEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WKI + ++ L E K+L S I R+ NS AD
Sbjct: 64 GATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKLASSIGSVSYEWIPRSENSHAD 123
Query: 295 AQAN 298
A AN
Sbjct: 124 ALAN 127
>gi|336178893|ref|YP_004584268.1| phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
gi|334859873|gb|AEH10347.1| Phosphoglycerate mutase [Frankia symbiont of Datisca glomerata]
Length = 380
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GA++R A+ G+V R G +G ATNNVAEY+ LI GL+ A
Sbjct: 9 LVVEADGGSRGNPGPAGYGALVRDADTGAVLAERAGAIGRATNNVAEYQGLIAGLRAAAD 68
Query: 234 KGYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ V+ DSKLV Q+ G WKI + + L +A ++ +F + I R N+
Sbjct: 69 LAPDADVEVRMDSKLVVEQMSGRWKIKHPAMRPLATQAADVAREFPRVRYTWIPRERNAH 128
Query: 293 ADAQAN 298
AD AN
Sbjct: 129 ADRLAN 134
>gi|365175798|ref|ZP_09363222.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
gi|363612051|gb|EHL63609.1| hypothetical protein HMPREF1006_01167 [Synergistes sp. 3_1_syn1]
Length = 130
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAE-DGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS+GNPG+AGAGA+L E + +++ +G TNN AEY A IL L A ++G K
Sbjct: 5 FDGASRGNPGEAGAGALLLDEGENTIWETARYLGKKTNNEAEYNAAILLLTAAKERGVKE 64
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++V GDSKLV Q+ WKIN +L L K A E+ E + + + R N AD +N
Sbjct: 65 LKVYGDSKLVVCQLSKQWKINLPHLRELAKRAWEISEGM-TVRYEWVPRAKNKRADELSN 123
Query: 299 MGI 301
I
Sbjct: 124 EAI 126
>gi|448337168|ref|ZP_21526250.1| ribonuclease H [Natrinema pallidum DSM 3751]
gi|445626514|gb|ELY79857.1| ribonuclease H [Natrinema pallidum DSM 3751]
Length = 197
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG A G V+ DG V E +G ATNN AEY ALI GL+ A Y +
Sbjct: 73 FDGGSRGNPGPAAIGWVIVTGDGIVAEGGETIGTATNNQAEYEALITGLEAARDYDYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L EL F + + ++ R +N AD N
Sbjct: 133 HVRGDSELIVKQVRGEYDTNDPDLREKRVTVHELLRGFDEWTLEYVPREVNDRADGLVN 191
>gi|29832420|ref|NP_827054.1| bifunctional RNase H/acid phosphatase [Streptomyces avermitilis
MA-4680]
gi|29609539|dbj|BAC73589.1| putative bifunctional protein [Streptomyces avermitilis MA-4680]
Length = 438
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK--YALQ 233
+E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEYR L+ GLK AL
Sbjct: 7 VEADGGSRGNPGPAGYGAVVIDAATGETLAETAEYIGVATNNVAEYRGLLAGLKAARALD 66
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNS 291
+ IRV+ DSKLV Q+ G WKI + ++ L +EA + F Q+ + I R N
Sbjct: 67 PAAR-IRVRMDSKLVVEQMSGRWKIKHPDMKPLAREAAAV---FPPSQVTYEWIPRERNK 122
Query: 292 EADAQAN 298
AD AN
Sbjct: 123 HADRLAN 129
>gi|407277357|ref|ZP_11105827.1| bifunctional RNase H/acid phosphatase [Rhodococcus sp. P14]
Length = 364
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A+ +V R +G ATNNVAEY+ LI GL A +
Sbjct: 4 VVVEADGGSRGNPGPAGYGAVVFDADREAVLAERSASIGRATNNVAEYQGLIAGLTAAAE 63
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + ++ L A+EL F + + R N+ A
Sbjct: 64 LGADEVDVRMDSKLVVEQMSGRWKIKHPDMIPLAARARELAGGFSRVEFTWVPRAENAYA 123
Query: 294 DAQAN 298
D AN
Sbjct: 124 DRLAN 128
>gi|300858913|ref|YP_003783896.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|375289094|ref|YP_005123635.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314669|ref|YP_005375524.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
gi|384505083|ref|YP_005681753.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|384507183|ref|YP_005683852.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|384509271|ref|YP_005685939.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|384511360|ref|YP_005690938.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|387137006|ref|YP_005692986.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686367|gb|ADK29289.1| hypothetical protein cpfrc_01496 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206612|gb|ADL10954.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis C231]
gi|302331163|gb|ADL21357.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1002]
gi|308276856|gb|ADO26755.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis I19]
gi|341825299|gb|AEK92820.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis PAT10]
gi|348607451|gb|AEP70724.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576383|gb|AEX39986.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380870170|gb|AFF22644.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis P54B96]
Length = 385
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G VL + + RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 296 QANMGI 301
AN +
Sbjct: 125 LANKAM 130
>gi|410479732|ref|YP_006767369.1| ribonuclease H [Leptospirillum ferriphilum ML-04]
gi|124515191|gb|EAY56702.1| putative ribonuclease H [Leptospirillum rubarum]
gi|406774984|gb|AFS54409.1| putative ribonuclease H [Leptospirillum ferriphilum ML-04]
Length = 134
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG--VGIATNNVAEYRALILGLKYALQKGYKH 238
DGAS+GNPG + G +L+ EDG V EG + TNN AEY+ALI GL+ A +G ++
Sbjct: 6 DGASRGNPGPSSIGYLLKDEDGRVI-FSEGRILPPGTNNQAEYQALIAGLQAARDRGVRN 64
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ V+ DS+L+ Q+ G +++ N L ++A L F + Q HI R N++AD AN
Sbjct: 65 LLVRADSELMIRQMTGKYRVRNPGLLACYEQATNLSRSFDTIQFEHIPREQNAQADRLAN 124
>gi|397679207|ref|YP_006520742.1| hypothetical protein MYCMA_0987 [Mycobacterium massiliense str. GO
06]
gi|418249476|ref|ZP_12875798.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|420951465|ref|ZP_15414710.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|420955636|ref|ZP_15418875.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|420960762|ref|ZP_15423990.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|420991604|ref|ZP_15454755.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|420997443|ref|ZP_15460582.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|421001877|ref|ZP_15465005.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|353451131|gb|EHB99525.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus
47J26]
gi|392159547|gb|EIU85241.1| ribonuclease HI [Mycobacterium massiliense 2B-0626]
gi|392188268|gb|EIV13906.1| ribonuclease HI [Mycobacterium massiliense 2B-0307]
gi|392188328|gb|EIV13965.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-R]
gi|392198489|gb|EIV24101.1| ribonuclease HI [Mycobacterium massiliense 2B-0912-S]
gi|392253827|gb|EIV79294.1| ribonuclease HI [Mycobacterium massiliense 2B-1231]
gi|392256164|gb|EIV81625.1| ribonuclease HI [Mycobacterium massiliense 2B-0107]
gi|395457472|gb|AFN63135.1| Uncharacterized protein MYCMA_0987 [Mycobacterium massiliense str.
GO 06]
Length = 367
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYRWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|385807968|ref|YP_005844365.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
gi|383805361|gb|AFH52440.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 267]
Length = 386
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G VL + + RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 296 QANMGI 301
AN +
Sbjct: 125 LANKAM 130
>gi|365869848|ref|ZP_09409394.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414582616|ref|ZP_11439756.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|420876923|ref|ZP_15340293.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|420882488|ref|ZP_15345852.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|420888552|ref|ZP_15351905.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|420893582|ref|ZP_15356924.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|420898183|ref|ZP_15361519.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|420904204|ref|ZP_15367524.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|420971250|ref|ZP_15434446.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|421048746|ref|ZP_15511742.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|363998031|gb|EHM19239.1| RNase H/acid phosphatase [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392089544|gb|EIU15361.1| ribonuclease HI [Mycobacterium abscessus 5S-0304]
gi|392091543|gb|EIU17354.1| ribonuclease HI [Mycobacterium abscessus 5S-0421]
gi|392092166|gb|EIU17975.1| ribonuclease HI [Mycobacterium abscessus 5S-0422]
gi|392102172|gb|EIU27959.1| ribonuclease HI [Mycobacterium abscessus 5S-0708]
gi|392107424|gb|EIU33206.1| ribonuclease HI [Mycobacterium abscessus 5S-0817]
gi|392108028|gb|EIU33809.1| ribonuclease HI [Mycobacterium abscessus 5S-1212]
gi|392117768|gb|EIU43536.1| ribonuclease HI [Mycobacterium abscessus 5S-1215]
gi|392171657|gb|EIU97333.1| ribonuclease HI [Mycobacterium abscessus 5S-0921]
gi|392242911|gb|EIV68398.1| ribonuclease HI [Mycobacterium massiliense CCUG 48898]
Length = 367
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYRWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|169628993|ref|YP_001702642.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus ATCC
19977]
gi|419712078|ref|ZP_14239541.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M93]
gi|420909486|ref|ZP_15372799.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|420915872|ref|ZP_15379177.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|420920256|ref|ZP_15383554.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|420926757|ref|ZP_15390042.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|420930953|ref|ZP_15394229.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|420939217|ref|ZP_15402486.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|420941211|ref|ZP_15404471.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|420945750|ref|ZP_15409003.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|420966268|ref|ZP_15429476.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
gi|420977101|ref|ZP_15440283.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|420982482|ref|ZP_15445652.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|421006644|ref|ZP_15469758.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|421012405|ref|ZP_15475495.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|421017273|ref|ZP_15480338.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|421022493|ref|ZP_15485541.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|421028797|ref|ZP_15491832.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|421033596|ref|ZP_15496618.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|169240960|emb|CAM61988.1| Putative phosphoglycerate mutase [Mycobacterium abscessus]
gi|382939400|gb|EIC63729.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M93]
gi|392121860|gb|EIU47625.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-R]
gi|392123556|gb|EIU49318.1| ribonuclease HI [Mycobacterium abscessus 6G-0125-S]
gi|392134261|gb|EIU60003.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-S]
gi|392139165|gb|EIU64898.1| ribonuclease HI [Mycobacterium abscessus 6G-1108]
gi|392139971|gb|EIU65703.1| ribonuclease HI [Mycobacterium massiliense 1S-151-0930]
gi|392144732|gb|EIU70457.1| ribonuclease HI [Mycobacterium massiliense 1S-152-0914]
gi|392151338|gb|EIU77048.1| ribonuclease HI [Mycobacterium massiliense 1S-153-0915]
gi|392158958|gb|EIU84654.1| ribonuclease HI [Mycobacterium massiliense 1S-154-0310]
gi|392171360|gb|EIU97037.1| ribonuclease HI [Mycobacterium abscessus 6G-0212]
gi|392174500|gb|EIV00167.1| ribonuclease HI [Mycobacterium abscessus 6G-0728-R]
gi|392201187|gb|EIV26788.1| ribonuclease HI [Mycobacterium abscessus 3A-0119-R]
gi|392207255|gb|EIV32833.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-R]
gi|392214076|gb|EIV39630.1| ribonuclease HI [Mycobacterium abscessus 3A-0122-S]
gi|392215190|gb|EIV40738.1| ribonuclease HI [Mycobacterium abscessus 3A-0731]
gi|392230137|gb|EIV55647.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-S]
gi|392231362|gb|EIV56871.1| ribonuclease HI [Mycobacterium abscessus 3A-0930-R]
gi|392255269|gb|EIV80731.1| ribonuclease HI [Mycobacterium abscessus 3A-0810-R]
Length = 367
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYTWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|390437718|ref|ZP_10226247.1| Ribonuclease H like [Microcystis sp. T1-4]
gi|389838916|emb|CCI30371.1| Ribonuclease H like [Microcystis sp. T1-4]
Length = 279
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 72/127 (56%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
N S L FDG S+GNPG+A AV+ +G+ + ATNN AEY LI+GL+ A
Sbjct: 8 NDNSAVLYFDGGSRGNPGRAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLEKA 67
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G K + ++GDS+LV Q++G WK+ + +L + A +L +F I R NS
Sbjct: 68 QELGLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRACQLVAQFDRISWRWIERAKNS 127
Query: 292 EADAQAN 298
ADA AN
Sbjct: 128 LADAAAN 134
>gi|348171541|ref|ZP_08878435.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Saccharopolyspora spinosa NRRL 18395]
Length = 399
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLRE-GVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A G V R G+G+ TNNVAEY+ +I GL A +
Sbjct: 5 VVVEADGGSRGNPGPAGCGAVVRDAGSGEVLAERSIGLGVTTNNVAEYQGVIAGLLAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKL+ Q+ G WK+ + NL L EA++L F+ + + R N+ A
Sbjct: 65 LGAAAVEVRMDSKLIIEQLAGRWKVKHANLQPLAAEARQLIAGFEQVSLEWVPRAQNAHA 124
Query: 294 DAQAN 298
D AN
Sbjct: 125 DRLAN 129
>gi|379715775|ref|YP_005304112.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|386740800|ref|YP_006213980.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|387139069|ref|YP_005695048.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387141054|ref|YP_005697032.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850822|ref|YP_006353057.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
gi|349735547|gb|AEQ07025.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392845|gb|AER69510.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377654481|gb|AFB72830.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 316]
gi|384477494|gb|AFH91290.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 31]
gi|388248128|gb|AFK17119.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis 258]
Length = 385
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G VL + + RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTEILRRLAYVVGTATNNVAEYHALLNGLTAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WKI + ++ L + + F S I RN N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKQLALSCQHIASGFASITYTWIPRNQNARADE 124
Query: 296 QANMGI 301
AN +
Sbjct: 125 LANKAM 130
>gi|448613431|ref|ZP_21663311.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
gi|445740328|gb|ELZ91834.1| ribonuclease H [Haloferax mucosum ATCC BAA-1512]
Length = 197
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + +G V + +G TNN AEY ALI L A + GY +
Sbjct: 73 FDGASRGNPGPAAIGWAIVTNNGIVAEGSKRIGETTNNRAEYEALIAALSAAAEYGYDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G WK N+ L +A+EL ++F + + H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWKTNDPGLRERRVKARELLDRFDRWSLEHVPREINDRADTLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|418420044|ref|ZP_12993225.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
gi|363999881|gb|EHM21082.1| RNase H/acid phosphatase [Mycobacterium abscessus subsp. bolletii
BD]
Length = 367
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESIDYKWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|110667198|ref|YP_657009.1| ribonuclease H I [Haloquadratum walsbyi DSM 16790]
gi|109624945|emb|CAJ51357.1| ribonuclease H, type 1 [Haloquadratum walsbyi DSM 16790]
Length = 198
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG A G VL +G + E +G TNN AEY AL ++ A Q G+ I
Sbjct: 74 FDGACRGNPGPAAIGWVLVTNEGIIADGGEEIGKTTNNRAEYAALERAIEMARQYGFTEI 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q+ G + N L +EL + F + I H+ R++NS AD AN
Sbjct: 134 DIRGDSQLIIRQVTGEYDTNEPTLREYRVRVRELLQTFDRWSIEHVPRDVNSHADKLAN 192
>gi|385802604|ref|YP_005839004.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
gi|339728096|emb|CCC39218.1| ribonuclease H, type 1 [Haloquadratum walsbyi C23]
Length = 198
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG A G VL +G + E +G TNN AEY AL ++ A Q G+ I
Sbjct: 74 FDGACRGNPGPAAIGWVLVTNEGIIADGGEEIGKTTNNRAEYAALERAIEMARQYGFTEI 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q+ G + N L +EL + F + I H+ R++NS AD AN
Sbjct: 134 DIRGDSQLIIRQVTGEYDTNEPTLREYRVRVRELLQTFDRWSIEHVPRDVNSHADKLAN 192
>gi|420863765|ref|ZP_15327158.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|420868165|ref|ZP_15331549.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|420872597|ref|ZP_15335977.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|420986789|ref|ZP_15449950.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|421038986|ref|ZP_15501997.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|421042955|ref|ZP_15505958.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
gi|392071858|gb|EIT97700.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RA]
gi|392074285|gb|EIU00124.1| ribonuclease HI [Mycobacterium abscessus 4S-0303]
gi|392076786|gb|EIU02619.1| ribonuclease HI [Mycobacterium abscessus 4S-0726-RB]
gi|392188206|gb|EIV13845.1| ribonuclease HI [Mycobacterium abscessus 4S-0206]
gi|392227200|gb|EIV52714.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-R]
gi|392240886|gb|EIV66377.1| ribonuclease HI [Mycobacterium abscessus 4S-0116-S]
Length = 367
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYRWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|448733009|ref|ZP_21715255.1| ribonuclease H [Halococcus salifodinae DSM 8989]
gi|445803342|gb|EMA53639.1| ribonuclease H [Halococcus salifodinae DSM 8989]
Length = 197
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
+CY FDGAS+GNPG A G V+ +G V E + TNN AEY AL+ L+ A
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVTSEGIVDEGGERIDDTTNNRAEYEALLRVLEVA 124
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ ++ + V+GDS+LV Q++G W N L +EL + F + I H+ R N
Sbjct: 125 REYDFETVDVRGDSQLVVEQVRGAWDTNEPALRERRIRVRELLDGFDEWSIEHVPREAND 184
Query: 292 EADAQAN 298
AD +AN
Sbjct: 185 RADERAN 191
>gi|375141515|ref|YP_005002164.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
gi|359822136|gb|AEV74949.1| fructose-2,6-bisphosphatase [Mycobacterium rhodesiae NBB3]
Length = 362
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D + ++ +G +TNNVAEY LI GL+ A
Sbjct: 3 VIVEADGGSRGNPGPAGYGAVVWTVDRRTVLAERKQAIGHSTNNVAEYSGLIAGLEEAAT 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WK+ + ++ L ++A L +F + R NS A
Sbjct: 63 LGASEVEVNMDSKLVVEQMSGRWKVKHPDMVPLHQQATALSTRFDRVTYTWVPREKNSHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|284991875|ref|YP_003410429.1| phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
gi|284065120|gb|ADB76058.1| Phosphoglycerate mutase [Geodermatophilus obscurus DSM 43160]
Length = 363
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ- 233
+E DG S+GNPG AG GA++R A G V R E VG ATNNVAEY L+ GL+ AL
Sbjct: 5 VVEADGGSRGNPGPAGYGALVRDATTGKVLAERAESVGRATNNVAEYGGLVAGLQAALDL 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ V+ DSKLV Q+ G WK+ + ++ L +A+++ + S + + R N A
Sbjct: 65 DPTADVEVRMDSKLVVEQMSGRWKVKHPDMQKLALQARQIARQLGSVRYTWVPRAQNGAA 124
Query: 294 DAQAN 298
DA AN
Sbjct: 125 DALAN 129
>gi|448322504|ref|ZP_21511974.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
gi|445601262|gb|ELY55251.1| ribonuclease H [Natronococcus amylolyticus DSM 10524]
Length = 197
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ +G V E +G TNN AEY ALI L+ A + GY +
Sbjct: 73 FDGASRGNPGPASIGWVIVTSEGIVAEGGERIGRTTNNQAEYTALITALEAAEEYGYGEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+GDS+L+ Q++G + NN L A EL F + + ++ R +N AD AN
Sbjct: 133 HARGDSELIVKQVRGEYDTNNPELREQRVRALELLSSFDDWTLEYVPREVNDRADGLAN 191
>gi|352681730|ref|YP_004892254.1| ribonuclease HI [Thermoproteus tenax Kra 1]
gi|350274529|emb|CCC81174.1| ribonuclease HI [Thermoproteus tenax Kra 1]
Length = 193
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 10/132 (7%)
Query: 176 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVYRLREGVGIA------TNNVAEYRALILG 227
CT+ FDGA + NPG G G V+ E+G R+ G G+A TNNVAEY AL
Sbjct: 3 CTIYFDGACEPVNPGGLGTYGFVIYGENGK--RVARGYGVACSGSSCTNNVAEYTALREA 60
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
LK AL+ G + V+GDS+LV QI+G W +N+ L L E +EL KF S++I + R
Sbjct: 61 LKRALELGCSQVVVKGDSQLVVKQIRGEWGVNSSRLLALRDEVEELLGKFDSWEIQWVPR 120
Query: 288 NLNSEADAQANM 299
N EAD + +
Sbjct: 121 EENREADGLSQI 132
>gi|419717139|ref|ZP_14244530.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M94]
gi|382938582|gb|EIC62912.1| bifunctional RNase H/acid phosphatase [Mycobacterium abscessus M94]
Length = 367
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR--EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ + D + +G ATNNVAEYR LI GL A + G
Sbjct: 5 VEADGGSRGNPGLAGYGAVVFSPDHQTVLGEACDAIGHATNNVAEYRGLIAGLAEAARLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WK+ + +L L ++A +F+S I R N AD
Sbjct: 65 ATEVSVSMDSKLVVEQMSGRWKVKHPDLITLYQQAVTAAMQFESVDYKWIPRERNKHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|389863557|ref|YP_006365797.1| phosphoglycerate mutase [Modestobacter marinus]
gi|388485760|emb|CCH87308.1| Phosphoglycerate mutase [Modestobacter marinus]
Length = 369
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R AE G + R E VG ATNNVAEY L+ GL+ AL
Sbjct: 12 VEADGGSRGNPGPAGYGALVRDAETGRLLAERAESVGRATNNVAEYGGLVAGLQAALDLD 71
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V+ DSKLV Q+ G W+I + ++ L +A+++ + + + + R N AD
Sbjct: 72 PTASVEVRMDSKLVVEQMSGRWQIKHPDMKKLAVQARDIARQLGAVRYTWVPRAQNGAAD 131
Query: 295 AQAN 298
A AN
Sbjct: 132 ALAN 135
>gi|330469452|ref|YP_004407195.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
gi|328812423|gb|AEB46595.1| phosphoglycerate mutase [Verrucosispora maris AB-18-032]
Length = 403
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYAL 232
+ +E DG ++GNPG AG GAVLR G V R +G ATNNVAEY+ L+ GL A+
Sbjct: 5 TVLVEADGGARGNPGPAGYGAVLRDPATGEVLAERSAAIGTATNNVAEYQGLLAGLTAAV 64
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + V+ DSKLV Q+ G W+I + L L +A +L + + + I R+ N+
Sbjct: 65 ELGATEVEVRMDSKLVVEQMSGRWQIKHPGLRPLAAQAVQLVGRIGTVRFTWIPRDRNT 123
>gi|111221655|ref|YP_712449.1| bifunctional RNase H/acid phosphatase [Frankia alni ACN14a]
gi|111149187|emb|CAJ60870.1| Putative bifunctional protein (Ribonuclease H/phosphoglycerate
mutase) [Frankia alni ACN14a]
Length = 394
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A DG+V R +G ATNNVAEY LI GL+ A +
Sbjct: 23 LVVEADGGSRGNPGPAGYGAVVRDAADGTVLAERAASIGHATNNVAEYSGLIAGLRAAAE 82
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ + DSKLV Q+ G WK+ + + L EA L F + + + R N++
Sbjct: 83 IAPDAEVEARLDSKLVVEQMSGRWKVKHPAMRPLADEAAALARTFPAVRYQWVPRARNAD 142
Query: 293 AD 294
AD
Sbjct: 143 AD 144
>gi|118467729|ref|YP_888582.1| bifunctional RNase H/acid phosphatase [Mycobacterium smegmatis str.
MC2 155]
gi|399988606|ref|YP_006568956.1| bifunctional ribonuclease H/phosphoglycerate mutase [Mycobacterium
smegmatis str. MC2 155]
gi|118169016|gb|ABK69912.1| phosphoglycerate mutase [Mycobacterium smegmatis str. MC2 155]
gi|399233168|gb|AFP40661.1| Putative bifunctional ribonuclease H/phosphoglycerate mutase
[Mycobacterium smegmatis str. MC2 155]
Length = 365
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ D + + +E +G ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVYDADHATVLAERKEAIGRATNNVAEYRGLIAGLEAAAETG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G W++ + +L L + A L F I R NS AD
Sbjct: 65 ATEVAVSMDSKLVIEQMCGRWRVKHPDLIELQRRAAALAAGFDHVDYTWIPRERNSHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|345014665|ref|YP_004817019.1| phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
gi|344041014|gb|AEM86739.1| Phosphoglycerate mutase [Streptomyces violaceusniger Tu 4113]
Length = 391
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDG-SVYRLREGVGIATNNVAEYRALILGLK--YALQ 233
+E DG S+GNPG AG GAV L AE G + + E +G ATNNVAEY+ LI GL+ YAL
Sbjct: 7 VEADGGSRGNPGPAGYGAVVLDAETGEPLAEVAEYIGTATNNVAEYKGLIAGLRAAYALD 66
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+RV+ DSKLV Q+ G WKI + ++ L EAK + Q I R N A
Sbjct: 67 P-EAEVRVRMDSKLVIEQMSGRWKIKHPDMRPLAAEAKAIMPPGQ-LAYEWIPREKNKHA 124
Query: 294 DAQAN 298
D AN
Sbjct: 125 DRLAN 129
>gi|376248942|ref|YP_005140886.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|376251740|ref|YP_005138621.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|376257554|ref|YP_005145445.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
gi|372113244|gb|AEX79303.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC03]
gi|372115510|gb|AEX81568.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC04]
gi|372120071|gb|AEX83805.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae VA01]
Length = 375
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAA 61
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V+ DSKLV Q+ G WKI + ++ L E K+L S I R+ NS
Sbjct: 62 ELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKLASSIGSVSYEWIPRSENSH 121
Query: 293 ADAQAN 298
ADA AN
Sbjct: 122 ADALAN 127
>gi|448737145|ref|ZP_21719197.1| ribonuclease H [Halococcus thailandensis JCM 13552]
gi|445804358|gb|EMA54615.1| ribonuclease H [Halococcus thailandensis JCM 13552]
Length = 196
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
+CY FDGAS+GNPG A G V+ G V E VG TNN AEY AL L+ A
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVDSSGIVAEGGERVGETTNNRAEYDALTRVLERA 124
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G+ + ++GDS+LV Q++G W+ N+ L +EL E+F + I H+ R N
Sbjct: 125 ADYGFDTVELRGDSQLVVEQVRGAWQTNDPELRERRVRVRELLERFDDWSIEHVPREANE 184
Query: 292 EADAQAN 298
ADA+AN
Sbjct: 185 RADARAN 191
>gi|385991572|ref|YP_005909870.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
gi|339298765|gb|AEJ50875.1| bifunctional RNase H/acid phosphatase [Mycobacterium tuberculosis
CCDC5180]
Length = 241
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|312879052|ref|ZP_07738852.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
gi|310782343|gb|EFQ22741.1| ribonuclease H [Aminomonas paucivorans DSM 12260]
Length = 133
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS+GNPG+A AGA L +DG V + + +G+ TNN AEY AL+ L+ A ++G
Sbjct: 6 FDGASRGNPGEACAGAFLEDQDGKVLWECSQYLGVRTNNEAEYEALLRLLEEARRRGVAE 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ V GDS+LV Q+ WKIN +L L A EL E + + + R N+ ADA +N
Sbjct: 66 LEVCGDSRLVVCQVNRQWKINLPHLRELASRAWELMEGMK-VTLRWVPREQNARADALSN 124
Query: 299 MGI 301
+
Sbjct: 125 RAL 127
>gi|399575426|ref|ZP_10769184.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
gi|399239694|gb|EJN60620.1| hypothetical protein HSB1_12230 [Halogranum salarium B-1]
Length = 198
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + DG V E +G TNN AEY AL+ L+ A + G K I
Sbjct: 74 FDGASRGNPGPAAIGWAIVTSDGIVAEGSERIGQTTNNRAEYAALLKALEAASEYGLKEI 133
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+LV Q++G W N+ L EA+EL F + I H+ R +N AD AN
Sbjct: 134 DLRGDSQLVVKQVRGEWNTNDPGLREKRVEARELLTGFDRWSIAHVPREINERADTLAN 192
>gi|311741456|ref|ZP_07715280.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303626|gb|EFQ79705.1| phosphoglycerate mutase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 376
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGI----ATNNVAEYRALILGLKYALQKG 235
DG S+GNPG AG+G V+ DGS R LRE V + +TNNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGTVIY--DGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMG 65
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ DSKLV QI G WKI + ++ L A+E F SF ++ + R N ADA
Sbjct: 66 ATEVEFHMDSKLVVEQINGRWKIKHPDMQKLALRAREYINGFSSFSLDWVPRAKNKVADA 125
Query: 296 QAN 298
+N
Sbjct: 126 LSN 128
>gi|384516107|ref|YP_005711199.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
gi|334697308|gb|AEG82105.1| hypothetical protein CULC809_01573 [Corynebacterium ulcerans 809]
Length = 385
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G VL + RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTTILRRLAYIVGTATNNVAEYHALLNGLTAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WKI + ++ L +++ F S I R N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKELALTCRDIASGFASITYTWIPRKQNARADE 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|300783100|ref|YP_003763391.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
U32]
gi|384146325|ref|YP_005529141.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|399534986|ref|YP_006547648.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|299792614|gb|ADJ42989.1| putative bifunctional RNase H/acid phosphatase [Amycolatopsis
mediterranei U32]
gi|340524479|gb|AEK39684.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
gi|398315756|gb|AFO74703.1| bifunctional RNase H/acid phosphatase [Amycolatopsis mediterranei
S699]
Length = 402
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG GAV++ DG V R E +G+ TNNVAEY LI GL A +
Sbjct: 1 MVVEADGGSRGNPGPAGYGAVVKDSDGQVLAERKESLGVVTNNVAEYNGLIAGLAAAAEL 60
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WKI + + L + AKEL F + I R NS AD
Sbjct: 61 GASTVDVRMDSKLVVEQMSGRWKIKHPGMQPLAERAKELAAGFSRVKYEWIPRAQNSHAD 120
Query: 295 AQAN 298
AN
Sbjct: 121 RLAN 124
>gi|334563303|ref|ZP_08516294.1| bifunctional RNase H/acid phosphatase [Corynebacterium bovis DSM
20582]
Length = 398
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 178 LEFDGASKGNPGQAGAGA-VLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AGAG+ VL A+ +V E + ATNNVAEY L+ L A G
Sbjct: 20 VECDGGSRGNPGTAGAGSLVLTADRRTVLATCHEYIPRATNNVAEYTGLVNALTLARDLG 79
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V DSKLV Q+ G WKI + ++ L K L++ F + + R N+ ADA
Sbjct: 80 ARRVHVHMDSKLVVEQMSGRWKIKHPDMKPLAATVKALEKDFDAVDYTWVPRADNARADA 139
Query: 296 QANMGIYLK 304
AN + K
Sbjct: 140 LANQAMDTK 148
>gi|255324866|ref|ZP_05365975.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
gi|255298043|gb|EET77351.1| phosphoglycerate mutase [Corynebacterium tuberculostearicum SK141]
Length = 376
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGI----ATNNVAEYRALILGLKYALQKG 235
DG S+GNPG AG+G V+ DGS R LRE V + +TNNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGTVIY--DGSGQRILREIVYVVGTKSTNNVAEYNGLLRGLEAATEMG 65
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ DSKLV QI G WKI + ++ L A+E F SF ++ + R N ADA
Sbjct: 66 ATEVEFHMDSKLVVEQINGRWKIKHPDMQKLALRAREYINGFSSFSLDWVPRAKNKVADA 125
Query: 296 QAN 298
+N
Sbjct: 126 LSN 128
>gi|376243258|ref|YP_005134110.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
gi|372106500|gb|AEX72562.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae CDCE 8392]
Length = 377
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A +
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAAEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS AD
Sbjct: 64 GVTEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHAD 123
Query: 295 AQAN 298
A AN
Sbjct: 124 ALAN 127
>gi|448726654|ref|ZP_21709048.1| ribonuclease H [Halococcus morrhuae DSM 1307]
gi|445793984|gb|EMA44548.1| ribonuclease H [Halococcus morrhuae DSM 1307]
Length = 196
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
+CY FDGAS+GNPG A G V+ G V E VG TNN AEY AL L+ A
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVDSSGIVAEGGERVGETTNNRAEYDALTRVLERA 124
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G+ + ++GDS+LV Q++G W+ N+ L +EL E+F + I H+ R N
Sbjct: 125 ADYGFDTVELRGDSQLVVEQVKGAWQTNDPALRERRVRVRELLERFDDWSIEHVPREANE 184
Query: 292 EADAQAN 298
ADA+AN
Sbjct: 185 RADARAN 191
>gi|337291198|ref|YP_004630219.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|397654460|ref|YP_006495143.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
gi|334699504|gb|AEG84300.1| hypothetical protein CULC22_01590 [Corynebacterium ulcerans
BR-AD22]
gi|393403416|dbj|BAM27908.1| hypothetical protein CULC0102_1710 [Corynebacterium ulcerans 0102]
Length = 380
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G VL + RL VG ATNNVAEY AL+ GL A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVLFDATHTTILRRLAYIVGTATNNVAEYHALLNGLTAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G WKI + ++ L +++ F S I R N+ AD
Sbjct: 65 ATEVDVLMDSKLVVEQMSGRWKIKHPDMKELALTCRDIASGFASITYTWIPRKQNARADE 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|282856848|ref|ZP_06266107.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
gi|282585358|gb|EFB90667.1| phosphoglycerate mutase [Pyramidobacter piscolens W5455]
Length = 218
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG+AGAG V+ + +++R +G+ TNN AEY AL L + ++G K+
Sbjct: 6 FDGASRGNPGEAGAGMVIYDGERAIWRRALPLGMKTNNEAEYMALSLLVDELERRGLKNA 65
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI--NHILRNLNSEADAQA 297
++GDSKLV Q+ G WKI L L A + E+ ++ Q + R N+EAD +
Sbjct: 66 EIRGDSKLVISQVTGQWKIKEPRLKAL---ADPIIERIRALQARCRWVPRAQNAEADRLS 122
Query: 298 NMGI 301
N+ +
Sbjct: 123 NVAL 126
>gi|441212168|ref|ZP_20975194.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
gi|440626221|gb|ELQ88059.1| ribonuclease HI [Mycobacterium smegmatis MKD8]
Length = 365
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+ D + + +E +G ATNNVAEYR LI GL+ A + G
Sbjct: 5 VEADGGSRGNPGPAGYGAVVYDADHATVLAERKEAIGRATNNVAEYRGLIAGLEAAAETG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V DSKLV Q+ G W++ + +L L + A L F I R NS AD
Sbjct: 65 AIEVAVSMDSKLVIEQMCGRWRVKHPDLIELQRRAAALAAGFDHVDYTWIPRERNSHADR 124
Query: 296 QAN 298
AN
Sbjct: 125 LAN 127
>gi|452945313|gb|EME50836.1| bifunctional RNase H/acid phosphatase [Amycolatopsis decaplanina
DSM 44594]
Length = 373
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV++ A G V R+ VGIATNNVAEY LI GL A + G
Sbjct: 7 VEADGGSRGNPGPAGYGAVVKDAATGEVLAERKAYVGIATNNVAEYGGLIAGLAAAAELG 66
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V+ DSKLV Q+ G WK+ + ++ L EAKEL +F + I R NS AD
Sbjct: 67 ASTVDVRMDSKLVVEQMSGRWKVKHPSMQPLNAEAKELAARFSRVRYEWIPRAENSHADG 126
Query: 296 QANMGIYL-KDGQVEAECSSFT 316
AN + +DG+ + E T
Sbjct: 127 LANEAMDAGRDGEKQPEAPRKT 148
>gi|451944722|ref|YP_007465358.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904109|gb|AGF72996.1| bifunctional RNase H/acid phosphatase [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 407
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVG-IATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G V+ D +V R + VG ATNNVAEY ++ GL+ A + G
Sbjct: 5 IEADGGSRGNPGVAGSGTVVYDADRNVLREIAYVVGKRATNNVAEYHGMLRGLEAARELG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + DSKLV Q+ G WKI + ++ L EA+++ F S + R N ADA
Sbjct: 65 ASEVEIYLDSKLVVEQMSGRWKIKHPDMQKLAIEARKIMSTFDSVTFTWVPRAKNKAADA 124
Query: 296 QANM 299
+N+
Sbjct: 125 LSNV 128
>gi|358445660|ref|ZP_09156257.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
gi|356608441|emb|CCE54528.1| putative bifunctional RNase H/acid phosphatase [Corynebacterium
casei UCMA 3821]
Length = 391
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G V+ A DG L E V + +TNNVAEY L+ G++ A + G
Sbjct: 8 DGGSRGNPGTAGSGTVIYAADGKTI-LDEIVYVVGKKSTNNVAEYYGLLRGVERAAELGA 66
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DSKLV QI G WKI + ++ L EA++ + F SF ++ + R NS AD
Sbjct: 67 TEVEFFMDSKLVVEQINGRWKIKHPDMQKLAVEARKYIDTFDSFSLSWVARAKNSVADKL 126
Query: 297 AN 298
+N
Sbjct: 127 SN 128
>gi|376285171|ref|YP_005158381.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
gi|371578686|gb|AEX42354.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 31A]
Length = 377
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG+G ++ D S + + VG ATNNVAEY L+ GL+ A +
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 294 DAQAN 298
DA AN
Sbjct: 123 DALAN 127
>gi|375293529|ref|YP_005128068.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
gi|371583200|gb|AEX46866.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae INCA 402]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYALQK 234
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A +
Sbjct: 5 IEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAAEL 63
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS AD
Sbjct: 64 GATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHAD 123
Query: 295 AQAN 298
A AN
Sbjct: 124 ALAN 127
>gi|38234249|ref|NP_940016.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
NCTC 13129]
gi|376293655|ref|YP_005165329.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
gi|38200511|emb|CAE50207.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
gi|372110978|gb|AEX77038.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC02]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAA 61
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 62 ELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSH 121
Query: 293 ADAQAN 298
ADA AN
Sbjct: 122 ADALAN 127
>gi|38346888|emb|CAE03913.2| OSJNBb0015G09.7 [Oryza sativa Japonica Group]
Length = 1991
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1413 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1468
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G KH+ V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1469 RIAISLGIKHLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1528
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1529 NNEAADRLANFG 1540
>gi|376254768|ref|YP_005143227.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
gi|372117852|gb|AEX70322.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae PW8]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAA 61
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 62 ELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSH 121
Query: 293 ADAQAN 298
ADA AN
Sbjct: 122 ADALAN 127
>gi|284045112|ref|YP_003395452.1| ribonuclease H [Conexibacter woesei DSM 14684]
gi|283949333|gb|ADB52077.1| ribonuclease H [Conexibacter woesei DSM 14684]
Length = 133
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQK 234
+ DG ++GNPG A G V+ +G V R E +G ATNNVAEYRAL+LGL+ A
Sbjct: 3 LVVHVDGGARGNPGPAAVGVVVSTPEGEVVERRAETIGEATNNVAEYRALLLGLERARAL 62
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V DS+LV Q+ G +++ + + L A E F+++++ + R N++AD
Sbjct: 63 GATEVEVVNDSELVAKQVGGEYRVKHAAMRPLHAAALEALGGFEAWRVRSVPRAQNADAD 122
Query: 295 AQANMGI 301
A N +
Sbjct: 123 ALVNAAL 129
>gi|118370087|ref|XP_001018246.1| RNase H family protein [Tetrahymena thermophila]
gi|89300013|gb|EAR98001.1| RNase H family protein [Tetrahymena thermophila SB210]
Length = 726
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 172 NCYS-CTLEFDGASKGNPGQAGAGAVLRA--EDGSVYRLREGVGIATNNVAEYRALILGL 228
N YS C LEFDG SKGNPG++GAG +++ + + VG T N +EY ALI G+
Sbjct: 593 NFYSQCQLEFDGTSKGNPGRSGAGFIIKDLYTENKLLEYSVEVGTKTINQSEYLALIYGM 652
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ G K + +QGDS++V + G+++ +Q L AK L E F + +
Sbjct: 653 YTCYKLGIKQLTIQGDSEVVIKHMLGVYQCRSQQLREYYNLAKILDELFHFKDYVQVKKE 712
Query: 289 LNSEADAQANMGI 301
LN+EADA AN+ +
Sbjct: 713 LNTEADALANLAL 725
>gi|256395024|ref|YP_003116588.1| bifunctional RNase H/acid phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361250|gb|ACU74747.1| Phosphoglycerate mutase [Catenulispora acidiphila DSM 44928]
Length = 427
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 178 LEFDGASKGNPGQAGAGA-VLRAEDGSVY-RLREGVGIATNNVAEYRALILGLK--YALQ 233
+E DGAS+GNPG A GA V A G V L EG+G+ TNNVAEYR LI GL+ YAL
Sbjct: 7 VEADGASRGNPGPASYGALVADAATGEVLAELAEGLGVVTNNVAEYRGLIAGLRAAYALD 66
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + V+ DSKL Q+ G+W++ + ++ L +A+ + + + + R N A
Sbjct: 67 P-HAEVEVRMDSKLAVQQMSGVWQVKHPDIKQLAVQARTAFPQAGAVRYTWVPRAENKRA 125
Query: 294 DAQAN 298
DA AN
Sbjct: 126 DALAN 130
>gi|425468993|ref|ZP_18847962.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
gi|389884185|emb|CCI35486.1| Ribonuclease H like [Microcystis aeruginosa PCC 9701]
Length = 279
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S L FDG S+GNPG A AV+ +G+ + ATNN AEY LI+GL+ A +
Sbjct: 11 SAILYFDGGSRGNPGSAAGAAVIVLAEGNSLTTTRYMERATNNEAEYTGLIIGLEKAQEL 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + ++GDS+LV Q++G WK+ + +L + +L +F I R NS AD
Sbjct: 71 GLKSLEIRGDSQLVINQVKGDWKVKSDSLRPFYQRTCQLVAQFDRISWRWIERAKNSVAD 130
Query: 295 AQAN 298
A AN
Sbjct: 131 AAAN 134
>gi|375291330|ref|YP_005125870.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|376246167|ref|YP_005136406.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
gi|376288171|ref|YP_005160737.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|371581001|gb|AEX44668.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae 241]
gi|371585505|gb|AEX49170.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae BH8]
gi|372108797|gb|AEX74858.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Corynebacterium diphtheriae HC01]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGIATNNVAEYRALILGLKYAL 232
+E DG S+GNPG AG+G ++ D S L+E VG ATNNVAEY L+ GL+ A
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQV-LKEYSYVVGKATNNVAEYHGLLNGLRGAA 61
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS
Sbjct: 62 ELGATEVSVRMDSKLVVEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSH 121
Query: 293 ADAQAN 298
ADA AN
Sbjct: 122 ADALAN 127
>gi|419861224|ref|ZP_14383862.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982293|gb|EIK55800.1| bifunctional RNase H/acid phosphatase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 377
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG+G ++ D S + + VG ATNNVAEY L+ GL+ A +
Sbjct: 3 VIIEADGGSRGNPGIAGSGTLIYNADRSQVLKKYSYVVGKATNNVAEYHGLLNGLRGAAE 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + ++ L E K++ S I R+ NS A
Sbjct: 63 LGATEVSVRMDSKLVIEQMSGRWKIKHPDMKELALECKKVASSIGSVSYEWIPRSENSHA 122
Query: 294 DAQAN 298
DA AN
Sbjct: 123 DALAN 127
>gi|383785249|ref|YP_005469819.1| ribonuclease H [Leptospirillum ferrooxidans C2-3]
gi|383084162|dbj|BAM07689.1| putative ribonuclease H [Leptospirillum ferrooxidans C2-3]
Length = 134
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-----LREGVGIATNNVAEYRALILGLKYALQKG 235
DGAS+GNPG + G L E G R L EG TNNVAEY A++ GL A + G
Sbjct: 6 DGASRGNPGPSSYGWTLVDESGKCVREAGKRLPEG----TNNVAEYEAMVAGLTAACELG 61
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V+ DS+LV Q+ G +K+ + L L ++ EL +F H+ R N ADA
Sbjct: 62 IRQVVVRADSELVIRQVTGRYKVKSPGLFPLYQKVMELSGRFDRISFEHVPREQNKRADA 121
Query: 296 QANMGI 301
ANM +
Sbjct: 122 LANMAL 127
>gi|317506107|ref|ZP_07963932.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
gi|316255606|gb|EFV14851.1| phosphoglycerate mutase [Segniliparus rugosus ATCC BAA-974]
Length = 371
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL----REGVGIATNNVAEYRALILGLKYA 231
+E DG S+GNPG A GAV+ +GS R+ E +G ATNNVAEYR L+ GL+ A
Sbjct: 3 VVVEADGGSRGNPGPAAYGAVVLDSEGSGARVLAQRAERIGRATNNVAEYRGLVAGLEAA 62
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + + V+ DSKLV Q+ G WKI ++++ L A L F + R N
Sbjct: 63 KELGARRVAVRMDSKLVVEQMSGRWKIKHEDMRELASRAAALARGFDEVSYTWVPREQNK 122
Query: 292 EADAQANMGIYLKDGQVEAECSSFTK 317
ADA N + K+ +AE + K
Sbjct: 123 RADALLNAALDGKEVAGKAEAAEPPK 148
>gi|448476738|ref|ZP_21603673.1| ribonuclease H [Halorubrum aidingense JCM 13560]
gi|445815189|gb|EMA65121.1| ribonuclease H [Halorubrum aidingense JCM 13560]
Length = 198
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG G L DG V E +G TNN AEY ALI L+ A + G+ I
Sbjct: 73 FDGASRGNPGPGAVGWCLVTADGIVAEGGERIGRVTNNQAEYAALIRALEAADEYGFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +EL E+F + + H+ R +N+ AD AN
Sbjct: 133 DVRGDSELIVKQVRGEWNANDPELRERRVRVRELLERFDRWSLGHVPREINARADDLAN 191
>gi|406885924|gb|EKD33032.1| ribonuclease H [uncultured bacterium]
Length = 139
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++GNPG AG+GAVL ++DG + + + +G TNN AEY A++LGL A++ + +
Sbjct: 10 DGGARGNPGPAGSGAVLYSKDGKEIATVSKYIGNTTNNQAEYTAIVLGLSKAMELEAEEV 69
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L Q+ G +K+ N +A E L+ KF++ + +H+ R NS AD N
Sbjct: 70 DVYLDSELAVKQLNGQYKVKNPEIAKRFLEVHNLRLKFRNVRFSHVRREKNSRADELVNN 129
Query: 300 GI 301
I
Sbjct: 130 AI 131
>gi|429203761|ref|ZP_19195078.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
gi|428660773|gb|EKX60312.1| ribonuclease HI [Streptomyces ipomoeae 91-03]
Length = 618
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 178 LEFDGASKGNPGQAGAGAVLR--AEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG G+V+R A ++ E +G+ATNNVAEYR LI GLK A
Sbjct: 6 VEADGGSRGNPGPAGYGSVVRDAATGETLAEAAEYIGVATNNVAEYRGLIAGLKAARALD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 293
+RV+ DSKLV Q+ G WKI + ++ L EA L +++ I R+ N A
Sbjct: 66 PTATVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARILPPDHVTYE--WIPRDQNKHA 123
Query: 294 DAQAN 298
D AN
Sbjct: 124 DRLAN 128
>gi|227833568|ref|YP_002835275.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|262184559|ref|ZP_06043980.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
gi|227454584|gb|ACP33337.1| Ribonuclease HI [Corynebacterium aurimucosum ATCC 700975]
Length = 389
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G + ED S LRE + +TNNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTAVYNEDRSQL-LREIAYVVGQKSTNNVAEYHGLLRGLEAAVELGA 66
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DSKLV Q+ G WKI + ++ L EA+ L ++ SF + + R NS ADA
Sbjct: 67 DEVEFYMDSKLVVEQMNGRWKIKHPDMQKLAIEARRLLDQIPSFSLEWVPRAKNSVADAL 126
Query: 297 ANMGI 301
+N+ +
Sbjct: 127 SNVAM 131
>gi|386813851|ref|ZP_10101075.1| ribonuclease H [planctomycete KSU-1]
gi|386403348|dbj|GAB63956.1| ribonuclease H [planctomycete KSU-1]
Length = 203
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYAL 232
+ DGAS+GNPG+AG G V+ ++ + + E +G +TNNVAEYR++IL + A+
Sbjct: 71 LIIHTDGASRGNPGKAGIGIVIYDKEHHI--IEEACRYIGKSTNNVAEYRSMILAAQKAI 128
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
K + + DS+L+ Q+ G++++ + ++ L E L K ++I H+ R N
Sbjct: 129 HHNAKRVIFKTDSELLVRQLNGIYRVKSASILPLYNELMALLHKISVWKIQHVRREENIH 188
Query: 293 ADAQANMGI 301
ADA AN GI
Sbjct: 189 ADALANQGI 197
>gi|116317798|emb|CAH65837.1| OSIGBa0124C14.4 [Oryza sativa Indica Group]
Length = 1802
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1229 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1284
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G KH+ V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1285 LGIKHLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1344
Query: 294 DAQANMG 300
D AN G
Sbjct: 1345 DRLANFG 1351
>gi|374854542|dbj|BAL57421.1| ribonuclease H [uncultured candidate division OP1 bacterium]
gi|374856950|dbj|BAL59803.1| ribonuclease H [uncultured candidate division OP1 bacterium]
Length = 180
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKH 238
DGA++GNPG A G V+ G+V + + E +G TNNVAEYRALI +K L K
Sbjct: 8 IDGAAQGNPGDAAIGIVITDAQGNVVKEIAEYIGRTTNNVAEYRALIEAIKAVLPYAPKR 67
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ DS+L+ Q+ GL++I +L L ++ EL E+ S+Q+N++ R+ N +A A
Sbjct: 68 VIFFTDSQLLANQVNGLYRIRRPHLEPLHRQVHELLEQLPSWQVNYVERDANWKAHRLAQ 127
Query: 299 MGIYLKDGQVEAEC 312
+ K + EAE
Sbjct: 128 KALLEKVAK-EAEA 140
>gi|32488767|emb|CAE04320.1| OSJNBb0016D16.11 [Oryza sativa Japonica Group]
Length = 1748
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDG SK PG GAG VL + G +L + A++NVAEY AL+ GL+ A+ G
Sbjct: 1390 TMHFDG-SKRLPG-TGAGVVLISPTGRKIKLCAWIHFSASHNVAEYEALLHGLRIAISLG 1447
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V+GDS+LV Q+ W + N+ +E ++ ++KF +++H+LR+ N AD
Sbjct: 1448 IKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKWEDKFDGLELSHVLRHNNEAADR 1507
Query: 296 QANMG 300
AN G
Sbjct: 1508 LANFG 1512
>gi|440700793|ref|ZP_20883028.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
gi|440276655|gb|ELP64887.1| ribonuclease HI [Streptomyces turgidiscabies Car8]
Length = 386
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-- 233
+E DG S+GNPG AG G+V+ A ++ + E +GIATNNVAEYR LI GL+ A Q
Sbjct: 6 VEADGGSRGNPGPAGYGSVVIDAATGETLVEVAEYIGIATNNVAEYRGLIAGLRAAHQLD 65
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
H+R+ DSKLV Q+ G WKI + ++ L EA ++ I R N
Sbjct: 66 PDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAAKVFSVVGQVTYEWIPRGRNKH 123
Query: 293 ADAQAN 298
AD AN
Sbjct: 124 ADRLAN 129
>gi|72162352|ref|YP_290009.1| bifunctional RNase H/acid phosphatase [Thermobifida fusca YX]
gi|71916084|gb|AAZ55986.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 382
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQK 234
+E DGAS+GNPG AG GA +R D + + +G ATNNVAEYR LI GL+ A
Sbjct: 10 VIEADGASRGNPGPAGYGARVRDADTGELLAEVASPIGEATNNVAEYRGLIAGLEAAAAI 69
Query: 235 GYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ V+ DSKLV Q+ G WKI + L L ++A+++ S + R N++A
Sbjct: 70 DPTAAVEVRMDSKLVVEQMSGRWKIKHPALQPLARQARQVAASLASVTYRWVPREQNAQA 129
Query: 294 DAQANMGIYLKDGQV 308
D AN + DG V
Sbjct: 130 DRLANEAL---DGAV 141
>gi|222478744|ref|YP_002564981.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
gi|222451646|gb|ACM55911.1| ribonuclease H [Halorubrum lacusprofundi ATCC 49239]
Length = 198
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG G L DG V E +G TNN AEY ALI L+ A + + I
Sbjct: 73 FDGASRGNPGPGAVGWCLVTADGIVAEGGERIGRVTNNQAEYAALIRALEAADEYDFDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L +EL E+F + I H+ R +N AD AN
Sbjct: 133 DVRGDSQLIVKQVRGEWNANDPELRERRVRVRELLERFDRWSIGHVPREINERADDLAN 191
>gi|443293202|ref|ZP_21032296.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
gi|385883060|emb|CCH20447.1| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
[Micromonospora lupini str. Lupac 08]
Length = 387
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R +E G V R E +G ATNNVAEY+ LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRDSETGEVLAERSESLGTATNNVAEYQGLIAGLRAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
G + V+ DSKLV Q+ G W+I + L L +A L +F + + I R+ N
Sbjct: 66 VGAAEVDVRMDSKLVVEQMCGRWQIKHPGLRPLAAQAATLVGRFGAVRFTWIPRDQN 122
>gi|15789547|ref|NP_279371.1| hypothetical protein VNG0255C [Halobacterium sp. NRC-1]
gi|169235258|ref|YP_001688458.1| hypothetical protein OE1400F [Halobacterium salinarum R1]
gi|74581594|sp|Q9HSF6.1|RNH_HALSA RecName: Full=Ribonuclease HI; Short=Halo-RNase HI; Short=RNase HI
gi|10579895|gb|AAG18851.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167726324|emb|CAP13105.1| ribonuclease H, type 1 [Halobacterium salinarum R1]
Length = 199
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYALQKGY 236
FDGAS+GNPG A G VL + DG + + EG +G ATNN AEY ALI L+ A G+
Sbjct: 74 FDGASRGNPGPAAVGWVLVSGDGGI--VAEGGDTIGRATNNQAEYDALIAALEAAADFGF 131
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I ++GDS+LV Q+ G W N+ +L A+EL F + I H+ R N ADA
Sbjct: 132 DDIELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADAL 191
Query: 297 AN 298
AN
Sbjct: 192 AN 193
>gi|313127214|ref|YP_004037484.1| ribonuclease hi [Halogeometricum borinquense DSM 11551]
gi|448288314|ref|ZP_21479514.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
gi|312293579|gb|ADQ68039.1| ribonuclease HI [Halogeometricum borinquense DSM 11551]
gi|445569833|gb|ELY24403.1| ribonuclease H [Halogeometricum borinquense DSM 11551]
Length = 197
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G + +G V E +G TNN AEY ALI L+ A + G+ +
Sbjct: 73 FDGASRGNPGPAAIGWAIVNSEGIVGEGSETIGETTNNRAEYEALIRALEAADEYGFDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q+ G + NN L +EL E+F + + H+ R +N AD+ AN
Sbjct: 133 DVRGDSELIVKQVHGEYDTNNPELRERRVRVRELLERFDRWSLEHVPREINDRADSLANE 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|227548845|ref|ZP_03978894.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079066|gb|EEI17029.1| bifunctional RNase H/acid phosphatase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 368
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G+V+ DG+ L E + ++NNVAEY L+ GL+ A + G
Sbjct: 8 DGGSRGNPGVAGSGSVVYGADGTT--LAEVAYVVGQKSSNNVAEYHGLLRGLEAAREAGA 65
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ V DSKLV Q+ G WKI + ++A L ++A+ L F S + R N +AD
Sbjct: 66 TEVEVYMDSKLVVEQMSGRWKIKHPDMADLARQARSLAAGFSSVTYTWVPRAKNKKADEL 125
Query: 297 ANM 299
+N+
Sbjct: 126 SNV 128
>gi|296393054|ref|YP_003657938.1| phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
gi|296180201|gb|ADG97107.1| Phosphoglycerate mutase [Segniliparus rotundus DSM 44985]
Length = 378
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 68/123 (55%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG A GAV+ D + + E +G ATNNVAEYR LI GL+ A + G
Sbjct: 3 VVIEADGGSRGNPGPAAFGAVVLDGDRVLAQRAEQIGHATNNVAEYRGLIAGLEAAKELG 62
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V+ DSKLV Q+ G WK+ ++ + L A L F + + + R N ADA
Sbjct: 63 ASEVLVRMDSKLVVEQMSGRWKVKHEGMRELASRAAALSRAFDAVRYTWVPREQNKRADA 122
Query: 296 QAN 298
N
Sbjct: 123 LLN 125
>gi|306836559|ref|ZP_07469529.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
gi|304567583|gb|EFM43178.1| phosphoglycerate mutase [Corynebacterium accolens ATCC 49726]
Length = 398
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G V+ A DG LRE V + A+NNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGVAGSGTVVYAADGETV-LREIVYVVGKKASNNVAEYHGLLRGLEAAVELGA 66
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DS+LV Q+ G WKI + ++ L +A++L ++ ++ + RN N ADA
Sbjct: 67 DDVDFYMDSRLVVEQMNGRWKIKHPDMKQLGVQAQKLMQQLGRVNLSWVRRNDNKVADAL 126
Query: 297 AN 298
+N
Sbjct: 127 SN 128
>gi|227503210|ref|ZP_03933259.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
gi|227076271|gb|EEI14234.1| bifunctional RNase H/acid phosphatase [Corynebacterium accolens
ATCC 49725]
Length = 398
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G V+ A DG LRE V + A+NNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTVVYAADGETV-LREIVYVVGKKASNNVAEYHGLLRGLEAAVELGA 66
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DS+LV Q+ G WKI + ++ L +A++L ++ ++ + RN N ADA
Sbjct: 67 DDVDFYMDSRLVVEQMNGRWKIKHPDMKQLGVQAQKLMQQLGRVNLSWVRRNDNKVADAL 126
Query: 297 AN 298
+N
Sbjct: 127 SN 128
>gi|38344596|emb|CAE05341.2| OSJNBa0079M09.16 [Oryza sativa Japonica Group]
Length = 1601
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1378 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1433
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 1434 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 1493
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1494 NNEAADRLANFG 1505
>gi|116309081|emb|CAH66189.1| OSIGBa0144J05.1 [Oryza sativa Indica Group]
Length = 1601
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1378 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1433
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 1434 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 1493
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1494 NNEAADRLANFG 1505
>gi|22795275|gb|AAN08247.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1696
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1248 NTEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1303
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 1304 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 1363
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1364 NNEAADRLANFG 1375
>gi|38346855|emb|CAE02225.2| OSJNBb0015C06.3 [Oryza sativa Japonica Group]
Length = 1253
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 899 TMHFDGSKRLS--GTGAGVVLISPTGE--RLNYVLWIHFSASHNMAEYEALLHGLRIAIS 954
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G +H+ V+GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N A
Sbjct: 955 LGIRHLIVRGDSQLVVNQVMKEWSCLDDNMAAYRLEVRKLEDKFDGLELTHVLRHNNEAA 1014
Query: 294 DAQANMG 300
D AN G
Sbjct: 1015 DRLANFG 1021
>gi|91202043|emb|CAJ75103.1| similar to ribonuclease H [Candidatus Kuenenia stuttgartiensis]
Length = 197
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGLK 229
++ + DGAS+GNPG+AGAG + DG+ Y L E +G ATNNVAEY A+IL +
Sbjct: 65 HTLVIHTDGASRGNPGKAGAGIAIF--DGN-YHLVEEIGKFLGEATNNVAEYEAMILAAQ 121
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
A+ + + DS+L+ Q++G++++ N L L K+ L + ++I+H+ R
Sbjct: 122 KAVSYYPGKVVFKTDSELLVRQVKGIYRVKNPTLISLHKKLMTLFKTLPLWEISHVPREE 181
Query: 290 NSEADAQANMGI 301
NS AD AN I
Sbjct: 182 NSLADTIANRAI 193
>gi|302534166|ref|ZP_07286508.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
gi|302443061|gb|EFL14877.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. C]
Length = 180
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV L G R E +G+ATNNVAEY+ LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVLDPATGETLAERAEFIGVATNNVAEYKGLIAGLKAAAELA 65
Query: 236 YKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+RV+ DSKLV Q+ G WKI + ++ L EA ++ + Q I R N AD
Sbjct: 66 PDAVVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAAKILPRGQ-VTYEWIPRERNKHAD 124
Query: 295 AQAN 298
AN
Sbjct: 125 RLAN 128
>gi|386839876|ref|YP_006244934.1| hypothetical protein SHJG_3789 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100177|gb|AEY89061.1| hypothetical protein SHJG_3789 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793170|gb|AGF63219.1| hypothetical protein SHJGH_3554 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 468
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 16/130 (12%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS----VYRLREGVGIATNNVAEYRALILGLK--YA 231
+E DG S+GNPG AG GAV+ DG+ + E +G+ATNNVAEYR L+ GL+ +A
Sbjct: 6 VEADGGSRGNPGPAGYGAVVL--DGATGEALTEAAEYIGVATNNVAEYRGLLAGLRAAHA 63
Query: 232 LQKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 288
L + H+R+ DSKLV Q+ G WKI + ++ L EA+ + + Q+ + I R
Sbjct: 64 LDPSARVHVRM--DSKLVIEQMSGRWKIKHPDMKPLAAEARSV---YPPDQVTYEWIPRE 118
Query: 289 LNSEADAQAN 298
N AD AN
Sbjct: 119 RNKHADRLAN 128
>gi|455652133|gb|EMF30794.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
gancidicus BKS 13-15]
Length = 166
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVLR--AEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-- 233
+E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAEAAEFIGVATNNVAEYRGLLAGLRAARELD 65
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+ H+R+ DSKLV Q+ G WKI + + L EA + F Q+ + I R N
Sbjct: 66 PEARVHVRM--DSKLVVEQMSGRWKIKHPAMKPLAAEAATV---FPPGQVTYEWIPRERN 120
Query: 291 SEADAQAN 298
+ AD AN
Sbjct: 121 THADRLAN 128
>gi|383621855|ref|ZP_09948261.1| ribonuclease H [Halobiforma lacisalsi AJ5]
gi|448702705|ref|ZP_21700138.1| ribonuclease H [Halobiforma lacisalsi AJ5]
gi|445777266|gb|EMA28236.1| ribonuclease H [Halobiforma lacisalsi AJ5]
Length = 196
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ DG V E +G ATNN AEY ALI L+ A Y +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTGDGIVAEGSEEIGRATNNQAEYEALIAALEAARDYSYDDV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
R++GDS+L+ QI+G + NN L EL F + I H+ R +N AD AN
Sbjct: 133 RIRGDSELIVKQIRGEYDTNNPELREKRVTVHELLSAFDEWSIEHVPREVNDRADELAN 191
>gi|57834031|emb|CAI44627.1| B1168G10.11 [Oryza sativa Japonica Group]
Length = 1489
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1135 TMHFDGSKRLS--GTGAGVVLISPTGE--RLNYVLWIHFSASHNMAEYEALLHGLRIAIS 1190
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G +H+ V+GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N A
Sbjct: 1191 LGIRHLIVRGDSQLVVNQVMKEWSCLDDNMAAYRLEVRKLEDKFDGLELTHVLRHNNEAA 1250
Query: 294 DAQANMG 300
D AN G
Sbjct: 1251 DRLANFG 1257
>gi|456390282|gb|EMF55677.1| ribonuclease [Streptomyces bottropensis ATCC 25435]
Length = 476
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG G+V L A G ++ E +G+ATNNVAEYR LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGSVVLDAVTGETLVETAEYIGVATNNVAEYRGLIAGLKAAYELD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+RV+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PEASVRVRMDSKLVVEQLSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQNKH 122
Query: 293 ADAQAN 298
AD AN
Sbjct: 123 ADRLAN 128
>gi|383458171|ref|YP_005372160.1| hypothetical protein COCOR_06207 [Corallococcus coralloides DSM
2259]
gi|380730805|gb|AFE06807.1| hypothetical protein COCOR_06207 [Corallococcus coralloides DSM
2259]
Length = 144
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVL-RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA++GN G AGA AVL AE V RL + +G TNN AEY L++GL++A G + +
Sbjct: 6 DGAARGNRGPAGAEAVLMNAEGAVVARLGKFLGHQTNNYAEYMGLLIGLQHAKSLGAREV 65
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+L+ Q+ G +++ + L L +EA++L F ++ H+ R N+EAD +N
Sbjct: 66 EVFADSELLIRQLGGKYQVKSPTLKPLFQEAQKLLATFGKVKLAHVPRAQNAEADEMSNR 125
Query: 300 GI 301
I
Sbjct: 126 AI 127
>gi|257052283|ref|YP_003130116.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
gi|256691046|gb|ACV11383.1| ribonuclease H [Halorhabdus utahensis DSM 12940]
Length = 198
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG A G V+ DG + + EG +G TNN AEY ALI L+ A G+
Sbjct: 74 DGASRGNPGPAAIGWVILTGDGGI--VTEGGKRIGSTTNNRAEYEALIHALEIAADYGFD 131
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+ DS+L Q++G W N+ +L +EL +F + I H+ R +N ADA A
Sbjct: 132 SVEVRSDSELAVRQVRGEWDTNDPDLRERRVRVRELFREFDDWSIEHVPREINERADALA 191
Query: 298 N 298
N
Sbjct: 192 N 192
>gi|77554831|gb|ABA97627.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2010
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1432 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1487
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 1488 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 1547
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1548 NNEAADRLANFG 1559
>gi|424868008|ref|ZP_18291776.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
gi|206603679|gb|EDZ40159.1| Putative ribonuclease H [Leptospirillum sp. Group II '5-way CG']
gi|387221603|gb|EIJ76144.1| Putative ribonuclease H [Leptospirillum sp. Group II 'C75']
Length = 134
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG--VGIATNNVAEYRALILGLKYALQKGYKH 238
DGAS+GNPG + G +L+ E+G V EG + TNN AEY+ALI GL+ A +G ++
Sbjct: 6 DGASRGNPGPSSIGYLLQDEEGRVI-FSEGRVLPPGTNNQAEYQALIAGLQAARDRGVRN 64
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ V+ DS+L+ Q+ G +++ + L ++A L F + Q HI R N++AD AN
Sbjct: 65 LLVRADSELMIRQMTGKYRVRHPGLLACYEQATNLSRSFDTIQFEHIPREQNAQADRLAN 124
>gi|110288792|gb|ABG65979.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 251 NTEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 306
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 307 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 366
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 367 NNEAADRLANFG 378
>gi|25028689|ref|NP_738743.1| bifunctional RNase H/acid phosphatase [Corynebacterium efficiens
YS-314]
gi|23493975|dbj|BAC18943.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 435
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG+G V+ +E+ LRE VG +TNNVAEYR LI GL+ A +
Sbjct: 49 IEADGGSRGNPGVAGSGTVVYSENRERI-LREIAYVVGTRSTNNVAEYRGLIEGLRVARE 107
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WKI + ++ L EA+ L I R N A
Sbjct: 108 LGATEVEVFMDSKLVVEQMSGRWKIKHPDMKTLAMEARNLAGDIGRVTYTWIPREKNKAA 167
Query: 294 DAQANMGI 301
D +N+ +
Sbjct: 168 DHLSNVAM 175
>gi|259507750|ref|ZP_05750650.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
gi|259164543|gb|EEW49097.1| phosphoglycerate mutase family protein [Corynebacterium efficiens
YS-314]
Length = 391
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG+G V+ +E+ LRE VG +TNNVAEYR LI GL+ A +
Sbjct: 5 IEADGGSRGNPGVAGSGTVVYSENRERI-LREIAYVVGTRSTNNVAEYRGLIEGLRVARE 63
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WKI + ++ L EA+ L I R N A
Sbjct: 64 LGATEVEVFMDSKLVVEQMSGRWKIKHPDMKTLAMEARNLAGDIGRVTYTWIPREKNKAA 123
Query: 294 DAQANMGI 301
D +N+ +
Sbjct: 124 DHLSNVAM 131
>gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa Japonica Group]
Length = 1950
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1372 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1427
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1428 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1487
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1488 NNEAADRLANFG 1499
>gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa Japonica Group]
Length = 2013
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1435 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1490
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1491 RIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1550
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1551 NNEAADRLANFG 1562
>gi|400534113|ref|ZP_10797651.1| bifunctional RNase H/acid phosphatase [Mycobacterium colombiense
CECT 3035]
gi|400332415|gb|EJO89910.1| bifunctional RNase H/acid phosphatase [Mycobacterium colombiense
CECT 3035]
Length = 375
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ED + + ++ +G ATNNVAEYR LI GL AL
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTEDRTTVLAEAKQAIGRATNNVAEYRGLIAGLDDALN 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKL+ Q+ G WK+ + +L L EA++ +F + I R N+ A
Sbjct: 63 LGATEAAVYLDSKLLVEQMSGRWKVKHPDLIELHAEARDRARRFARISYSWIPRARNTHA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>gi|225021833|ref|ZP_03711025.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
gi|224945381|gb|EEG26590.1| hypothetical protein CORMATOL_01864 [Corynebacterium matruchotii
ATCC 33806]
Length = 401
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G V+ DG+ V +L VG ATNNVAEY AL GL A Q G
Sbjct: 5 IEADGGSRGNPGIAGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
I V+ DSKLV Q+ G WKI + ++ L + +++ S + + R
Sbjct: 65 ATDISVRMDSKLVVEQMSGRWKIKHPDMRELALKCQKILRTLHSAEFTWVPR 116
>gi|119716247|ref|YP_923212.1| phosphoglycerate mutase [Nocardioides sp. JS614]
gi|119536908|gb|ABL81525.1| Phosphoglycerate mutase [Nocardioides sp. JS614]
Length = 401
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVY-RLREGVGIATNNVAEYRALILGLKYAL 232
S +E DG S+GNPG A GAVLR AE G+V +GIA+NNVAEY LI GL+ A
Sbjct: 4 SVVVEADGGSRGNPGPAAYGAVLRDAETGAVIAEDATAIGIASNNVAEYSGLIAGLRLAE 63
Query: 233 QKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ I V+ DSKLV Q+ G WKI + ++ L EA L ++ + R N
Sbjct: 64 RFAPDADIEVRMDSKLVVEQMSGRWKIKHPDMRPLATEASRLAPFGTTY--TWVPREQNK 121
Query: 292 EADAQAN 298
AD AN
Sbjct: 122 HADRLAN 128
>gi|290960926|ref|YP_003492108.1| ribonuclease [Streptomyces scabiei 87.22]
gi|260650452|emb|CBG73568.1| putative ribonuclease [Streptomyces scabiei 87.22]
Length = 492
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG G+V L A G ++ E +G+ATNNVAEYR LI GLK A +
Sbjct: 6 VEADGGSRGNPGPAGYGSVVLDAVTGETLVEAAEYIGVATNNVAEYRGLIAGLKAAYELD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+RV+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PEASVRVRMDSKLVVEQLSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQNKH 122
Query: 293 ADAQAN 298
AD AN
Sbjct: 123 ADRLAN 128
>gi|406912524|gb|EKD52119.1| ribonuclease H [uncultured bacterium]
Length = 143
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS+GNPG AG GA L + +G YR + TNN AEY L+L L + I
Sbjct: 14 DGASRGNPGLAGCGAYLCSPEGQEYREFRFLDQVTNNQAEYEGLLLALTKLTELQADCIM 73
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
++ DS+L+ Q++G +++ N N+ L ++A+ L + F S Q H+ R N AD AN
Sbjct: 74 LRADSELMIKQLKGEYRVKNANMVPLFRKAQVLLKNFSSVQFEHVPRAQNKIADGLANQA 133
Query: 301 I 301
I
Sbjct: 134 I 134
>gi|305681140|ref|ZP_07403947.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
gi|305659345|gb|EFM48845.1| ribonuclease HI [Corynebacterium matruchotii ATCC 14266]
Length = 401
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG+G V+ DG+ V +L VG ATNNVAEY AL GL A Q G
Sbjct: 5 IEADGGSRGNPGIAGSGTVIYEADGTTVVRKLAYVVGTATNNVAEYHALYNGLCVAQQLG 64
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
I V+ DSKLV Q+ G WKI + ++ L + +++ S + + R
Sbjct: 65 ATDISVRMDSKLVVEQMSGRWKIKHPDMRELALKCQKILRTLHSAEFTWVPR 116
>gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa Japonica Group]
Length = 2008
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1430 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1485
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1486 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1545
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1546 NNEAADRLANFG 1557
>gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza sativa Japonica Group]
Length = 2010
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1432 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1487
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1488 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1547
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1548 NNEAADRLANFG 1559
>gi|116309829|emb|CAH66866.1| H0307D04.11 [Oryza sativa Indica Group]
Length = 2017
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1439 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFLASHNVAEYEALLHGL 1494
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1495 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1554
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1555 NNEAADRLANFG 1566
>gi|403737779|ref|ZP_10950507.1| putative ribonuclease H/acid phosphatase [Austwickia chelonae NBRC
105200]
gi|403191891|dbj|GAB77277.1| putative ribonuclease H/acid phosphatase [Austwickia chelonae NBRC
105200]
Length = 403
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GA++R AE G V R R E +G A+NNVAEY LI GL+ A +
Sbjct: 2 LVVEADGGSRGNPGVAGYGALVRDAETGRVLRERAEPLGKASNNVAEYSGLIAGLQAAAE 61
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL----KEKFQSFQINHILRN 288
+ V+ DSKLV Q+ G WKI ++++ L EA+ L K I R
Sbjct: 62 VDPAADVDVRMDSKLVVEQMSGRWKIKHEDMRRLADEARLLVAARKTAGGKVTFAWIPRE 121
Query: 289 LNSEADAQANMGI 301
N ADA +N+ +
Sbjct: 122 RNKAADALSNVAM 134
>gi|46391121|gb|AAS90648.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46485807|gb|AAS98432.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2000
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1422 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1477
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1478 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1537
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1538 NNEAADRLANFG 1549
>gi|302551031|ref|ZP_07303373.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302468649|gb|EFL31742.1| bifunctional RNase H/acid phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 559
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQ-- 233
+E DG S+GNPG AG GAV+ A G R + E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLREVAEYIGVATNNVAEYRGLLAGLRAAHELD 65
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ + + R N
Sbjct: 66 PDATVHVRM--DSKLVIEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWMPREQN 120
Query: 291 SEADAQAN 298
AD AN
Sbjct: 121 KHADRLAN 128
>gi|77554274|gb|ABA97070.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1988
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1410 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1465
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1466 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELSHVLRH 1525
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1526 NNEAADRLANFG 1537
>gi|357413710|ref|YP_004925446.1| phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
gi|320011079|gb|ADW05929.1| Phosphoglycerate mutase [Streptomyces flavogriseus ATCC 33331]
Length = 429
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ + ++ E +G+ATNNVAEYR LI GLK A++
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVLDPLDTATLAEAAEYIGVATNNVAEYRGLIAGLK-AVR 65
Query: 234 KGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
+ +RV+ DSKLV Q+ G WKI + ++ L +EA + S I R
Sbjct: 66 DLFPDTPVQVRVRMDSKLVVEQMSGRWKIKHPDMKPLAEEAARILPA-SSVTYEWIPRAE 124
Query: 290 NSEADAQAN 298
N AD AN
Sbjct: 125 NKHADRLAN 133
>gi|77551564|gb|ABA94361.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQK 234
T+ FDG+ + + GAG VL + G Y LR A++NVAEY AL+ GL+ A+
Sbjct: 1147 TMHFDGSKRLS--GTGAGVVLLSPTGERLSYVLRIHFS-ASHNVAEYEALLHGLRIAISL 1203
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V+GDS+LV Q+ W + N+ +E ++L++KF F++ H+LR+ N AD
Sbjct: 1204 GIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGFELTHVLRHNNEAAD 1263
Query: 295 AQANM 299
AN
Sbjct: 1264 RLANF 1268
>gi|294812367|ref|ZP_06771010.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|326440801|ref|ZP_08215535.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|294324966|gb|EFG06609.1| bifunctional RNase H/acid phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 499
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK--Y 230
S +E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEY+ L+ GLK +
Sbjct: 3 SFVVEADGGSRGNPGPAGYGAVVIDAASGETLAETAEYIGVATNNVAEYKGLVAGLKAAH 62
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 288
AL +RV+ DSKLV Q+ G WKI + ++ L EA + F + +++ I R
Sbjct: 63 ALDP-DAMVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAGRV---FPAASVSYEWIPRE 118
Query: 289 LNSEADAQAN 298
N AD AN
Sbjct: 119 RNKHADRLAN 128
>gi|406905527|gb|EKD46967.1| Ribonuclease H [uncultured bacterium]
Length = 141
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 181 DGASKGNPGQAGAGAVLRA------EDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
DG ++GNPG +GAG V+ A E ++ + +G ATNN+AEY A+ILGL AL+
Sbjct: 8 DGGARGNPGPSGAGFVIYALNDQDQEAEKIFADGKYLGDATNNIAEYEAVILGLTKALEL 67
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + DS+L+ Q+ G +K+ N+ LA + L +F+ H+ R N EAD
Sbjct: 68 NASSVDLVMDSELIVKQLNGEYKVKNEGLAQKYLQVHNLLYRFERVTFRHVRREFNKEAD 127
Query: 295 AQANMGI 301
AQ N +
Sbjct: 128 AQVNKAL 134
>gi|38346515|emb|CAE03810.2| OSJNBa0027H09.10 [Oryza sativa Japonica Group]
gi|38567795|emb|CAE76081.1| B1340F09.19 [Oryza sativa Japonica Group]
Length = 1570
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1321 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAVS 1376
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++HILR+ N A
Sbjct: 1377 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHILRHNNEAA 1436
Query: 294 DAQANMG 300
D AN G
Sbjct: 1437 DRLANFG 1443
>gi|108708760|gb|ABF96555.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1659
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + AGAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLT--GAGAGVVLISPTGE--RLSYVLWIHFSASHNMAEYEALLHGLRIAIS 1157
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1158 LGIRRLIVRGDSQLVVNQVMKEWSCQDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1217
Query: 294 DAQANMG 300
D AN G
Sbjct: 1218 DRLANFG 1224
>gi|20451040|gb|AAM22011.1|AC093178_6 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430828|gb|AAP52687.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1933
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|37991853|gb|AAR06299.1| putative gag-pol protein [Oryza sativa Japonica Group]
Length = 1653
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + AGAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLT--GAGAGVVLISPTGE--RLSYVLWIHFSASHNMAEYEALLHGLRIAIS 1157
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1158 LGIRRLIVRGDSQLVVNQVMKEWSCQDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1217
Query: 294 DAQANMG 300
D AN G
Sbjct: 1218 DRLANFG 1224
>gi|13129430|gb|AAK13088.1|AC078839_4 Gag-Pol precursor [Oryza sativa Japonica Group]
Length = 677
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQKG 235
T+ FDG+ + + GAG VL + G + +T +NVAEY AL+ GL+ A+ G
Sbjct: 316 TMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFSTLHNVAEYEALLHGLRIAVSLG 373
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V+GDS+LV Q+ W + N+A +E ++LK+KF ++ H+LR+ N AD
Sbjct: 374 IRRLIVRGDSQLVVNQVMKEWSCLDDNMAAYRQEVRKLKDKFDGLELTHVLRHDNEAADR 433
Query: 296 QANMG 300
AN G
Sbjct: 434 LANFG 438
>gi|77552546|gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2289
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1716 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1771
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1772 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1831
Query: 294 DAQANMG 300
D AN G
Sbjct: 1832 DRLANFG 1838
>gi|222641167|gb|EEE69299.1| hypothetical protein OsJ_28580 [Oryza sativa Japonica Group]
Length = 521
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 36 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFLASHNVAEYEALLHGL 91
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 92 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 151
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 152 NNEAADRLANFG 163
>gi|77555386|gb|ABA98182.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1940
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1367 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1422
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1423 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1482
Query: 294 DAQANMG 300
D AN G
Sbjct: 1483 DRLANFG 1489
>gi|288924295|ref|ZP_06418314.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
gi|288344357|gb|EFC78867.1| Phosphoglycerate mutase [Frankia sp. EUN1f]
Length = 378
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GA++R G V R +G ATNNVAEY L+ GL+ A
Sbjct: 7 LVIEADGGSRGNPGPAGYGALVRDPATGEVLAERAAAIGTATNNVAEYEGLLAGLRAAAD 66
Query: 234 KGYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ V+ DSKLV Q+ G WK+ + ++ L EA L +F S + + R N++
Sbjct: 67 VAPDADLEVRMDSKLVVEQMSGRWKVKHPSMRPLVTEASGLVSRFPSVRFVWVPRARNAD 126
Query: 293 AD 294
AD
Sbjct: 127 AD 128
>gi|38347154|emb|CAE02434.2| OSJNBa0039G19.14 [Oryza sativa Japonica Group]
Length = 640
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G +L + I A++NVAEY AL+ GL+ A+
Sbjct: 186 TMHFDGSKRLS--DTGAGIVLISPTGE--KLSYVLWIHFSASHNVAEYEALLHGLRIAVS 241
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G +H+ V GDS+LV Q+ W + N+A E ++L++KF ++ H+LR+ N A
Sbjct: 242 FGIRHLIVHGDSQLVANQVMKEWSCLDDNMAAYWHEVRKLEDKFDGLELTHVLRHNNDAA 301
Query: 294 DAQANM 299
D AN
Sbjct: 302 DRLANF 307
>gi|374990380|ref|YP_004965875.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
gi|297161032|gb|ADI10744.1| bifunctional RNase H/acid phosphatase [Streptomyces bingchenggensis
BCW-1]
Length = 421
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 10/128 (7%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDG--SVYRLREGVGIATNNVAEYRALILGLKYAL--- 232
+E DG S+GNPG AG GAV+ D ++ E +G ATNNVAEY+ LI GL+ A
Sbjct: 7 VEADGGSRGNPGPAGYGAVVLDPDTGETLAEAAEYIGTATNNVAEYKGLIAGLRAARALD 66
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+ ++V+ DSKLV Q+ G WK+ + + L EA+E+ F Q+++ I R N
Sbjct: 67 PEAGVQVQVRMDSKLVVEQMSGRWKVKHPGMRPLAAEAREI---FPPGQVSYEWIPRERN 123
Query: 291 SEADAQAN 298
AD AN
Sbjct: 124 KHADRLAN 131
>gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1756
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1183 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1238
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1239 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1298
Query: 294 DAQANMG 300
D AN G
Sbjct: 1299 DRLANFG 1305
>gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa Japonica Group]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza sativa Japonica Group]
Length = 1802
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|46485805|gb|AAS98430.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2004
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1431 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1486
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1487 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1546
Query: 294 DAQANMG 300
D AN G
Sbjct: 1547 DRLANFG 1553
>gi|78708485|gb|ABB47460.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 561
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQKG 235
T+ FDG+ + + GAG VL + G + +T +NVAEY AL+ GL+ A+ G
Sbjct: 316 TMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFSTLHNVAEYEALLHGLRIAVSLG 373
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V+GDS+LV Q+ W + N+A +E ++LK+KF ++ H+LR+ N AD
Sbjct: 374 IRRLIVRGDSQLVVNQVMKEWSCLDDNMAAYRQEVRKLKDKFDGLELTHVLRHDNEAADR 433
Query: 296 QANMG 300
AN G
Sbjct: 434 LANFG 438
>gi|21741950|emb|CAD40441.1| OSJNBa0035B13.14 [Oryza sativa Japonica Group]
Length = 1736
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL GL
Sbjct: 1340 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALFHGL 1395
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+
Sbjct: 1396 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRH 1455
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1456 NNEAADRLANFG 1467
>gi|18071370|gb|AAL58229.1|AC084762_3 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2026
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|110289529|gb|AAP54912.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1537
Query: 294 DAQANMG 300
D AN G
Sbjct: 1538 DRLANFG 1544
>gi|77555417|gb|ABA98213.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1446
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1447 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1506
Query: 294 DAQANMG 300
D AN G
Sbjct: 1507 DRLANFG 1513
>gi|40882693|gb|AAR96234.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708469|gb|ABF96264.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2004
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1537
Query: 294 DAQANMG 300
D AN G
Sbjct: 1538 DRLANFG 1544
>gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1991
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1473
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1474 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1533
Query: 294 DAQANMG 300
D AN G
Sbjct: 1534 DRLANFG 1540
>gi|116309752|emb|CAH66795.1| H0215F08.6 [Oryza sativa Indica Group]
Length = 1991
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1473
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1474 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1533
Query: 294 DAQANMG 300
D AN G
Sbjct: 1534 DRLANFG 1540
>gi|77552111|gb|ABA94908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1994
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1421 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1476
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1477 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1536
Query: 294 DAQANMG 300
D AN G
Sbjct: 1537 DRLANFG 1543
>gi|22128685|gb|AAM92798.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1986
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1468
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1469 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1528
Query: 294 DAQANMG 300
D AN G
Sbjct: 1529 DRLANFG 1535
>gi|456969859|gb|EMG10771.1| ribonuclease HI [Leptospira interrogans serovar Grippotyphosa str.
LT2186]
Length = 133
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G V + +R+ E +G TNNVAE+ AL G++ + + +
Sbjct: 3 TIYCDGASKGNPGPSSIGIVAYIHEKEEFRISERIGETTNNVAEWSALKKGIEECISRKF 62
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR-NLNSEADA 295
I DS+LV Q+ G +K+ + NL KE +L SFQI H+ R + S ++
Sbjct: 63 DSIHAYMDSELVVKQVNGKYKVKHPNLLEYKKEVDKLISSLHSFQITHVPREKIQSRINS 122
Query: 296 QA 297
Q
Sbjct: 123 QT 124
>gi|77555933|gb|ABA98729.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1446
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1447 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1506
Query: 294 DAQANMG 300
D AN G
Sbjct: 1507 DRLANFG 1513
>gi|227504616|ref|ZP_03934665.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
gi|227198826|gb|EEI78874.1| bifunctional RNase H/acid phosphatase [Corynebacterium striatum
ATCC 6940]
Length = 391
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLRE---GVGI-ATNNVAEYRALILGLKYALQKGY 236
DG S+GNPG AG+G + + D LRE VG +TNNVAEY L+ GL+ A++ G
Sbjct: 8 DGGSRGNPGIAGSGTAVYSADRKQL-LREIAYVVGTKSTNNVAEYHGLLRGLEAAVEMGA 66
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ DSKLV Q+ G WKI + ++ L EA++L ++ SF + + R N ADA
Sbjct: 67 DDVDFYMDSKLVVEQMNGRWKIKHPDMQALALEARKLIDQIGSFTLTWVPRAKNKAADAL 126
Query: 297 ANM 299
+N+
Sbjct: 127 SNV 129
>gi|38344380|emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa Japonica Group]
gi|116309070|emb|CAH66179.1| OSIGBa0130O15.3 [Oryza sativa Indica Group]
gi|116309097|emb|CAH66204.1| OSIGBa0148D14.10 [Oryza sativa Indica Group]
Length = 1992
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1419 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1474
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1475 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1534
Query: 294 DAQANMG 300
D AN G
Sbjct: 1535 DRLANFG 1541
>gi|222637552|gb|EEE67684.1| hypothetical protein OsJ_25333 [Oryza sativa Japonica Group]
Length = 238
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 41 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 96
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 97 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 156
Query: 294 DAQANMG 300
D AN G
Sbjct: 157 DRLANFG 163
>gi|77552282|gb|ABA95079.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1966
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1393 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1448
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1449 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1508
Query: 294 DAQANMG 300
D AN G
Sbjct: 1509 DRLANFG 1515
>gi|22128689|gb|AAM92802.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|110288734|gb|AAP52501.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1446
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1447 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1506
Query: 294 DAQANMG 300
D AN G
Sbjct: 1507 DRLANFG 1513
>gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa Japonica Group]
Length = 1986
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1468
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1469 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1528
Query: 294 DAQANMG 300
D AN G
Sbjct: 1529 DRLANFG 1535
>gi|54287609|gb|AAV31353.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1799
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1226 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1281
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1282 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1341
Query: 294 DAQANMG 300
D AN G
Sbjct: 1342 DRLANFG 1348
>gi|13876521|gb|AAK43497.1|AC020666_7 gag-pol precursor [Oryza sativa Japonica Group]
Length = 2017
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|108862820|gb|ABA98926.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1991
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1418 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1473
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1474 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1533
Query: 294 DAQANMG 300
D AN G
Sbjct: 1534 DRLANFG 1540
>gi|53982138|gb|AAV25234.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1953
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1413 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1468
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1469 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1528
Query: 294 DAQANMG 300
D AN G
Sbjct: 1529 DRLANFG 1535
>gi|62734763|gb|AAX96872.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549715|gb|ABA92512.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1372 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1427
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1428 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1487
Query: 294 DAQANMG 300
D AN G
Sbjct: 1488 DRLANFG 1494
>gi|52549819|gb|AAU83668.1| conserved hypothetical protein [uncultured archaeon GZfos32E7]
Length = 173
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA +GNPG AG G V+ E G + +E +G ATNN+AEYRALI L+ A +
Sbjct: 23 DGACRGNPGPAGIGIVICNESGKKIKEDKEFIGDATNNIAEYRALIKALELASDFSVTRV 82
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR--NLNSEADAQA 297
DS+L+ Q+ G +++ ++ L L + KE + F+ +H+ R NL AD+ A
Sbjct: 83 ECFSDSELMVRQLNGAYRVKDEKLGELFLQVKEKERLFEEVTYSHVPRKNNLIKRADSLA 142
Query: 298 NMGI 301
N+GI
Sbjct: 143 NLGI 146
>gi|77555338|gb|ABA98134.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1956
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|77552232|gb|ABA95029.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1537
Query: 294 DAQANMG 300
D AN G
Sbjct: 1538 DRLANFG 1544
>gi|110288733|gb|AAP52499.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAA 1537
Query: 294 DAQANMG 300
D AN G
Sbjct: 1538 DRLANFG 1544
>gi|78708235|gb|ABB47210.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNKAA 1537
Query: 294 DAQANMG 300
D AN G
Sbjct: 1538 DRLANFG 1544
>gi|18958679|gb|AAL82662.1|AC092387_10 retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|20270061|gb|AAM18149.1|AC092172_9 Putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31430891|gb|AAP52743.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1964
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1391 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1446
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1447 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1506
Query: 294 DAQANMG 300
D AN G
Sbjct: 1507 DRLANFG 1513
>gi|40538890|gb|AAR87147.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50838974|gb|AAT81735.1| RNase H domain containing protein [Oryza sativa Japonica Group]
gi|108708966|gb|ABF96761.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1227
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GLK A+
Sbjct: 844 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLRGLKIAIS 899
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ E ++L++KF ++ H+LR+ N A
Sbjct: 900 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRHEVRKLEDKFDGLELTHVLRHNNEAA 959
Query: 294 DAQANMG 300
D AN G
Sbjct: 960 DRLANFG 966
>gi|19881590|gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Japonica Group]
Length = 2017
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNKAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|317125175|ref|YP_004099287.1| ribonuclease H [Intrasporangium calvum DSM 43043]
gi|315589263|gb|ADU48560.1| ribonuclease H [Intrasporangium calvum DSM 43043]
Length = 350
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR--AEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GA++R A + L E +G+A+NNVAEY L+ GL+ A +
Sbjct: 13 LVVEADGGSRGNPGVAGYGALVRDGASGAVLIELAEPLGLASNNVAEYSGLLAGLRAAAE 72
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ----SFQINHILRN 288
+ V+ DSKLV Q+ G WK+ ++++ L E +E+ + + S I R
Sbjct: 73 IDSAARVHVRMDSKLVVEQMSGRWKVKHEDMRRLAGEVREVLREIEAAGGSVHFEWIPRE 132
Query: 289 LNSEADAQANMGIYLKDGQ 307
N AD +N + DGQ
Sbjct: 133 RNKAADLLSNEAM---DGQ 148
>gi|336252198|ref|YP_004595305.1| ribonuclease H [Halopiger xanaduensis SH-6]
gi|335336187|gb|AEH35426.1| ribonuclease H [Halopiger xanaduensis SH-6]
Length = 197
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+GNPG AG G V+ DG V E +G ATNN AEY ALI L+ A G+ +
Sbjct: 73 FDGGSRGNPGPAGIGWVIVTGDGIVAEAGERIGRATNNQAEYEALIAALEAARDYGFDEV 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +N AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELRERRVTVHELLGSFDEWTLEHVPREVNDRADGLAN 191
>gi|406956500|gb|EKD84584.1| ribonuclease H [uncultured bacterium]
Length = 135
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG A G + EDG + L E +GIATNNVAEY A++ LKY +K K
Sbjct: 8 DGASRGNPGHASYGFTISNEDGKL--LHESGKYIGIATNNVAEYMAVLEALKYVKEKYSK 65
Query: 238 HIR---VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+R + DSKLV Q+ G +K+ + +L L K L + H+ R N+EAD
Sbjct: 66 DLRSIELFADSKLVAEQLSGRYKVKSAHLKPLIGSIKILVLELGGVLFTHVPRAKNAEAD 125
Query: 295 AQANMGI 301
AN+ +
Sbjct: 126 RLANLAL 132
>gi|38346695|emb|CAE02180.2| OSJNBa0080E14.11 [Oryza sativa Japonica Group]
Length = 2001
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISPAGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|77556422|gb|ABA99218.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 365 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 420
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 421 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 480
Query: 294 DAQANMG 300
D AN G
Sbjct: 481 DRLANFG 487
>gi|77550802|gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1912
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1440 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1495
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ E ++L++KF +++H+LR+ N A
Sbjct: 1496 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRPEVRKLEDKFDGLELSHVLRHNNEAA 1555
Query: 294 DAQANMG 300
D AN G
Sbjct: 1556 DRLANFG 1562
>gi|50300537|gb|AAT73678.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1992
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1419 TMHFDGSKRLS--GTGAGVVLISPAGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1474
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1475 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1534
Query: 294 DAQANMG 300
D AN G
Sbjct: 1535 DRLANFG 1541
>gi|38344628|emb|CAE02527.2| OSJNBb0003A12.14 [Oryza sativa Japonica Group]
Length = 1863
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 1290 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNIAEYEALLHGLRIAIS 1345
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1346 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1405
Query: 294 DAQANMG 300
D AN G
Sbjct: 1406 DRLANFG 1412
>gi|51854356|gb|AAU10736.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353374|gb|AAU43942.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1995
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1429 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1484
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1485 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEIRKLEDKFDGLELSHVLRHNNEAA 1544
Query: 294 DAQANMG 300
D AN G
Sbjct: 1545 DRLANFG 1551
>gi|62701710|gb|AAX92783.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550530|gb|ABA93327.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RLR + I A++NVAEY AL+ GL+ A+
Sbjct: 901 TMHFDGSKRLS--GTGAGVVLISPTGE--RLRYVLCIHFSASHNVAEYEALLHGLRIAIS 956
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 957 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1016
Query: 294 DAQANMG 300
D AN G
Sbjct: 1017 DRLANFG 1023
>gi|301094364|ref|XP_002896288.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109683|gb|EEY67735.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 174
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAE-DGSVYRLREG-VG-IATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG++G GA+L G V VG + TNN AEY L+L L+ A Q
Sbjct: 40 DGASRGNPGRSGCGALLMDPITGRVLATETKYVGDLETNNAAEYHGLMLALQLAQQHQAT 99
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
H+ V DS+L+ Q+ G +++ NL L ++ KEL +H+ R N+EAD A
Sbjct: 100 HVHVHMDSQLIVRQMMGQYRVKAANLRKLHQQCKELSAALPYVTFSHVAREENTEADRLA 159
Query: 298 NMGI 301
N I
Sbjct: 160 NEAI 163
>gi|77554304|gb|ABA97100.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 790
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 217 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 272
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 273 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 332
Query: 294 DAQANMG 300
D AN G
Sbjct: 333 DRLANFG 339
>gi|374307431|ref|YP_005053862.1| ribonuclease H [Filifactor alocis ATCC 35896]
gi|291166555|gb|EFE28601.1| ribonuclease H [Filifactor alocis ATCC 35896]
Length = 230
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAG-AVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG S+GNPG + G +++ G + E +G TNN+AEY AL L+ L K +
Sbjct: 9 DGGSRGNPGPSAIGYKIIQPSTGEFLCIGEEIGETTNNIAEYTALCESLRVCLCNHVKSV 68
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V DS+LV QI G +++ N NL L ++AK + F I+HILR N EAD N+
Sbjct: 69 EVYMDSELVVKQIIGNYRVKNINLKPLYEQAKNYISQLSDFSIHHILRGKNKEADRLVNL 128
Query: 300 GI 301
+
Sbjct: 129 AL 130
>gi|218196063|gb|EEC78490.1| hypothetical protein OsI_18391 [Oryza sativa Indica Group]
Length = 614
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 41 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 96
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 97 LGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 156
Query: 294 DAQANMG 300
D AN G
Sbjct: 157 DRLANFG 163
>gi|448352651|ref|ZP_21541432.1| ribonuclease H [Natrialba hulunbeirensis JCM 10989]
gi|445641930|gb|ELY95001.1| ribonuclease H [Natrialba hulunbeirensis JCM 10989]
Length = 197
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ +G V +G ATNN AEY ALI L+ A GY I
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEGIVAEGSNRIGRATNNQAEYEALIAALEAARDYGYDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADELAN 191
>gi|77553887|gb|ABA96683.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1844
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1444 TMHFDGSKRLS--GTGAGVVLISLTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1500 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1559
Query: 294 DAQANMG 300
D AN G
Sbjct: 1560 DRLANFG 1566
>gi|297194680|ref|ZP_06912078.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152391|gb|EFH31713.1| bifunctional RNase H/acid phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 423
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 177 TLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK--YAL 232
+E DG S+GNPG AG GAV+ ++ E +G+ATNNVAEY+ L+ GLK +AL
Sbjct: 8 VVEADGGSRGNPGPAGYGAVVLDPVSGETLAEAAEYIGVATNNVAEYKGLVAGLKAAHAL 67
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+RV+ DSKLV Q+ G WKI + ++ L EA + F Q+ + I R N
Sbjct: 68 DP-EALVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPAQVTYEWIPRERN 123
Query: 291 SEADAQAN 298
AD AN
Sbjct: 124 KHADRLAN 131
>gi|32480322|emb|CAE02454.1| OSJNBa0042D13.7 [Oryza sativa Japonica Group]
Length = 909
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 336 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 391
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 392 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 451
Query: 294 DAQANMG 300
D AN G
Sbjct: 452 DRLANFG 458
>gi|260655683|ref|ZP_05861156.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
gi|424845430|ref|ZP_18270041.1| ribonuclease HI [Jonquetella anthropi DSM 22815]
gi|260629600|gb|EEX47794.1| Ribonuclease HI [Jonquetella anthropi E3_33 E1]
gi|363986868|gb|EHM13698.1| ribonuclease HI [Jonquetella anthropi DSM 22815]
Length = 196
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG GAGAVL V++ + + TNN AEY AL L L+ Q+G +
Sbjct: 7 FDGASRGNPGTGGAGAVLLCGGRPVWQAALPIELCTNNEAEYTALGLLLREIEQRGLRGA 66
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V GDS+LV Q+ G WKI LA L EL K + R N+ AD +N
Sbjct: 67 SVFGDSQLVIRQVTGAWKIKEPRLAALAAPLIELA-KTLGVSFRWVPREQNALADRLSNR 125
Query: 300 GI 301
I
Sbjct: 126 AI 127
>gi|62733846|gb|AAX95955.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550301|gb|ABA93098.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1731
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-------ATNNVAEYRALILGLK 229
T+ FDG+ + + AGAG VL ++ RE + A++NVAEY AL+ GL+
Sbjct: 1216 TMHFDGSKRLS--GAGAGVVL------IFPTRERLSYVLWIHFSASHNVAEYEALLHGLR 1267
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
A+ G + + V+GDS+LV Q+ W + N+ +E ++LK+KF ++ H+LR+
Sbjct: 1268 IAISLGIQRLIVRGDSQLVVNQVMKEWSCLDDNMTANRQEVRKLKDKFDGLELTHVLRHN 1327
Query: 290 NSEADAQANMG 300
N AD AN G
Sbjct: 1328 NEAADRLANFG 1338
>gi|302391482|ref|YP_003827302.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
gi|302203559|gb|ADL12237.1| ribonuclease H [Acetohalobium arabaticum DSM 5501]
Length = 201
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS---VYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG G G +++ DGS L + +G ATNN AEY+A+I GLK A + +
Sbjct: 8 DGASRGNPGPGGIGVLIK--DGSNNIKEELADYIGEATNNEAEYQAIIAGLKKARELNSE 65
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
I + DS+LV Q+ G +++ ++ L E KEL + HI R N +AD A
Sbjct: 66 SISLFSDSQLVIKQLTGEYRVRSEKLKPYYLEIKELLQDLPDCDFQHIPREENHKADELA 125
Query: 298 NMGI 301
N+GI
Sbjct: 126 NLGI 129
>gi|76803222|ref|YP_331317.1| ribonuclease H I [Natronomonas pharaonis DSM 2160]
gi|76559087|emb|CAI50685.1| ribonuclease H, type 1 [Natronomonas pharaonis DSM 2160]
Length = 195
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ +DG V E +G ATNN AEY ALI L A +
Sbjct: 72 FDGASRGNPGPAAIGWVIVTDDGIVAEGSERIGRATNNQAEYEALIEALAAAADYAFDEA 131
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G W N+ L ++L E+F + ++H+ R +N AD AN
Sbjct: 132 VVKGDSQLIVKQVRGEWDTNDPTLREKRVRVRKLLEEFSEWSLDHVPREINDRADDLAN 190
>gi|4680180|gb|AAD27548.1|AF111709_2 polyprotein [Oryza sativa Indica Group]
Length = 829
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++N+AEY AL+ GL+ A+
Sbjct: 256 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNIAEYEALLHGLRIAIS 311
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 312 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 371
Query: 294 DAQANMG 300
D AN G
Sbjct: 372 DRLANFG 378
>gi|77554600|gb|ABA97396.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2196
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1623 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1678
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1679 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMTYRQEVRKLEDKFDGLELSHVLRHNNEAA 1738
Query: 294 DAQANMG 300
D AN G
Sbjct: 1739 DRLANFG 1745
>gi|298705061|emb|CBJ28520.1| ribonuclease HI [Ectocarpus siliculosus]
Length = 355
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 41/167 (24%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG----------VGIA---TNNVAEYRAL 224
L+FDG S+GNPG +G GAVL YRL E V I TNN AEYR L
Sbjct: 186 LQFDGGSRGNPGPSGCGAVL-------YRLDESGEREEVWSSSVWIGEKRTNNEAEYRGL 238
Query: 225 ILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWK------------------INNQNLAGL 266
I GL A + G K + V+GDSKLV Q+ G +K + + + L
Sbjct: 239 IEGLIAAEKLGIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQPL 298
Query: 267 CKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECS 313
+EA + + F + ++ HI+R N AD AN+ + D + + C+
Sbjct: 299 FREATTISKAFDALELGHIMRAHNERADDLANIAM---DTETSSSCT 342
>gi|398786385|ref|ZP_10549126.1| phosphoglycerate mutase [Streptomyces auratus AGR0001]
gi|396993686|gb|EJJ04747.1| phosphoglycerate mutase [Streptomyces auratus AGR0001]
Length = 393
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 10/132 (7%)
Query: 173 CYSCTLEFDGASKGNPGQAGAGAV-LRAEDG-SVYRLREGVGIATNNVAEYRALILGLK- 229
+ +E DG S+GNPG AG GAV L E G ++ E +G ATNNVAEY+ L+ GL+
Sbjct: 2 ARTLIVEADGGSRGNPGPAGYGAVVLDPETGEALAEAAEFLGTATNNVAEYKGLVAGLRA 61
Query: 230 -YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--IL 286
+AL IRV+ DSKLV Q+ G WKI + ++ L EA+ + F ++++ I
Sbjct: 62 AHALDP-EADIRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEARSV---FPPDRVSYEWIP 117
Query: 287 RNLNSEADAQAN 298
R N AD AN
Sbjct: 118 RAQNKHADRLAN 129
>gi|22830273|gb|AAN08656.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31431603|gb|AAP53354.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 641
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ K P GAG VL + G RLR + I A++NVAEY AL+ G + A+
Sbjct: 216 TMHFDGSKK--PSGTGAGVVLISPTGE--RLRYVLWIHFSASHNVAEYEALLHGQRIAVS 271
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + V DS+LV Q+ W + N+A +E ++L++KF ++ H+LR+ N A
Sbjct: 272 LRIRRLIVHDDSQLVVNQVMKEWSCLDDNMAAYQQEVRKLEDKFDGLELTHVLRHNNEAA 331
Query: 294 DAQANMG 300
D AN G
Sbjct: 332 DRLANFG 338
>gi|294102762|ref|YP_003554620.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617742|gb|ADE57896.1| ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 198
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDGAS+GNPG+AGAGAVL E+G V++ +G TNN AEY L+L L+ +G K
Sbjct: 6 FDGASRGNPGEAGAGAVLYNEEGHMVWQKFAYLGSQTNNEAEYGGLLLLLREIQLRGIKK 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I ++GDS+LV Q++ WK+N+ +L L +EA+ L + Q+ + R NS AD +N
Sbjct: 66 IVIRGDSRLVICQMKKEWKVNSPHLKELWEEAQSLLKGCQA-TFEWVPRKENSNADLLSN 124
Query: 299 MGI 301
I
Sbjct: 125 KAI 127
>gi|386386675|ref|ZP_10071794.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
gi|385665871|gb|EIF89495.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
tsukubaensis NRRL18488]
Length = 167
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYAL 232
S +E DG S+GNPG AG GAV+ ++ E +G+ATNNVAEY+ LI GL+ A
Sbjct: 3 SFVVEADGGSRGNPGPAGYGAVVLDPVTGETLAEAAEYIGVATNNVAEYKGLIAGLRAAR 62
Query: 233 QKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+RV+ DSKLV Q+ G WKI + ++ L EA + + + I R N
Sbjct: 63 DIAPDASVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARIFPR-SAVTYEWIPREQNK 121
Query: 292 EADAQAN 298
AD AN
Sbjct: 122 HADRLAN 128
>gi|268324318|emb|CBH37906.1| ribonuclease H [uncultured archaeon]
Length = 142
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA +GNPG AG G V+ E G + + +E +G ATNN+AEYRALI L+ A +
Sbjct: 10 DGACRGNPGPAGIGIVICNESGEIIKEDKEFIGNATNNIAEYRALIKALELANDFSVTRV 69
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN--LNSEADAQA 297
DS+L+ Q+ G +++ N+ L L + KE + F+ +H+ R L AD A
Sbjct: 70 ECFSDSELMVRQLNGAYRVKNEKLGELFLQVKEKERLFEEVTYSHVPREKGLIKRADKLA 129
Query: 298 NMGI 301
N+GI
Sbjct: 130 NLGI 133
>gi|269125916|ref|YP_003299286.1| phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
gi|268310874|gb|ACY97248.1| Phosphoglycerate mutase [Thermomonospora curvata DSM 43183]
Length = 378
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R A G V + E +G ATNNVAEYR LI GL+ A +
Sbjct: 14 VEADGGSRGNPGPAGYGALVRDALTGEVLAEVAEAIGHATNNVAEYRGLIAGLRAAAEVD 73
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V+ DSKLV Q+ G WKI + +L L +A++ + + R+ N+ AD
Sbjct: 74 PAARVEVRMDSKLVVEQMSGRWKIRHPDLMPLALQARDAAAALGAVSYTWVPRDRNAHAD 133
Query: 295 AQAN 298
AN
Sbjct: 134 RLAN 137
>gi|108705936|gb|ABF93731.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1953
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQKG 235
T+ FDG+ + + GAG VL + G + +T +NVAEY AL+ GL+ A+ G
Sbjct: 1380 TMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFSTSHNVAEYEALLHGLRIAISLG 1437
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N AD
Sbjct: 1438 IKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADR 1497
Query: 296 QANMG 300
AN G
Sbjct: 1498 LANFG 1502
>gi|406920065|gb|EKD58194.1| phosphoglycerate mutase [uncultured bacterium]
Length = 137
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYALQKGYK 237
DG S+GNPG AG G V+R DG V ++EG +GIATNNVAEY A+I L + L+K +
Sbjct: 7 DGGSRGNPGHAGFGYVVR-RDGKV--IKEGYGYIGIATNNVAEYTAVIEALSW-LEKHFP 62
Query: 238 HIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + DSKL Q+ G++K+ + + L + L F HI R LN EAD
Sbjct: 63 KVDLVINLDSKLAVSQLTGIYKVKDSKIRDLVFSIRMLANSFGQIIFRHIPRELNREADK 122
Query: 296 QAN 298
N
Sbjct: 123 LVN 125
>gi|441158769|ref|ZP_20967447.1| bifunctional RNase H/acid phosphatase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440617274|gb|ELQ80382.1| bifunctional RNase H/acid phosphatase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 394
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 10/130 (7%)
Query: 175 SCTLEFDGASKGNPGQAGAGAV-LRAEDG-SVYRLREGVGIATNNVAEYRALILGLK--Y 230
+ +E DG S+GNPG AG GAV + E G + E +G ATNNVAEYR L+ GL+ +
Sbjct: 4 TLIVEADGGSRGNPGPAGYGAVVIDPESGQPLAEAAEYIGTATNNVAEYRGLLAGLRAAH 63
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 288
AL + +RV+ DSKLV Q+ G WKI + ++ L EA+ + F ++ + I R
Sbjct: 64 ALDPDAE-VRVRMDSKLVVEQMSGRWKIKHPDMRPLAAEARTV---FPPDRVTYEWIPRE 119
Query: 289 LNSEADAQAN 298
N AD AN
Sbjct: 120 QNKHADLLAN 129
>gi|398347057|ref|ZP_10531760.1| ribonuclease HI [Leptospira broomii str. 5399]
Length = 134
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G + ++ ++ + E + TNN AE+ AL GL + L+
Sbjct: 5 TIFCDGASKGNPGPSSIGVAIFEDEEEIHSISERIEDGTNNTAEWAALEAGLIWCLENKA 64
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
++ DS+LV Q++G +K+ + +L + L K SF+I H++R N AD
Sbjct: 65 SEVKAFLDSELVVKQVKGEYKVKSPHLIEAKRRVISLSSKLDSFKIAHVMREKNKRADKL 124
Query: 297 ANMGI 301
AN+
Sbjct: 125 ANLAF 129
>gi|31432435|gb|AAP54065.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1995
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1537
Query: 294 DAQANMG 300
D N G
Sbjct: 1538 DRLVNFG 1544
>gi|379735432|ref|YP_005328938.1| hypothetical protein BLASA_1993 [Blastococcus saxobsidens DD2]
gi|378783239|emb|CCG02907.1| conserved protein of unknown function [Blastococcus saxobsidens
DD2]
Length = 364
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ- 233
+E DG S+GNPG AG GA++R A+ G V R VG ATNNVAEY L+ GL+ AL
Sbjct: 6 VVEADGGSRGNPGPAGYGALVRDAQTGRVLAERAASVGRATNNVAEYGGLVAGLQAALDL 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ V+ DSKLV Q+ G WKI + ++ L +A+++ K + + R N A
Sbjct: 66 DPSAQVEVRMDSKLVVEQMSGRWKIKHPDMQQLALQAQQIARKLGGVRYTWVPRAQNGAA 125
Query: 294 DAQAN 298
DA AN
Sbjct: 126 DALAN 130
>gi|448350244|ref|ZP_21539063.1| ribonuclease H [Natrialba taiwanensis DSM 12281]
gi|445637751|gb|ELY90899.1| ribonuclease H [Natrialba taiwanensis DSM 12281]
Length = 197
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 70/122 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ DG V + +G ATNN AEY ALI L+ A GY +
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDGIVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+GDS+L+ Q++G + N+ +L EL +F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNDPDLREKRVTVHELLTEFDEWTLEHVPREVNSRADELANK 192
Query: 300 GI 301
+
Sbjct: 193 AL 194
>gi|68535744|ref|YP_250449.1| bifunctional RNase H/acid phosphatase [Corynebacterium jeikeium
K411]
gi|68263343|emb|CAI36831.1| rnhA [Corynebacterium jeikeium K411]
Length = 431
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ---- 233
+E DG S+GNPG AG G+ + D V E + ATNNVAEY+ LI L+ A++
Sbjct: 5 VECDGGSRGNPGIAGCGSSVLEGDQEVAARWEFIAKATNNVAEYQGLINALELAIEVAKI 64
Query: 234 ----KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
G I+V+ DSKLV Q+ G WKI + ++ L KEL+ + N + R
Sbjct: 65 RGVAAGDLEIQVRMDSKLVVEQMSGRWKIKHPDMKPLAARVKELEATLAAVTYNWVPRAQ 124
Query: 290 NSEADAQANMGI 301
N AD AN +
Sbjct: 125 NKRADELANRAM 136
>gi|448369893|ref|ZP_21556346.1| ribonuclease H [Natrialba aegyptia DSM 13077]
gi|445650333|gb|ELZ03257.1| ribonuclease H [Natrialba aegyptia DSM 13077]
Length = 197
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ DG V + +G ATNN AEY ALI L+ A GY +
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDGIVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ +L EL +F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNDPDLREKRVTVHELLTEFDEWTLEHVPREVNSRADELAN 191
>gi|38344494|emb|CAE05173.2| OSJNBa0013A04.10 [Oryza sativa Japonica Group]
Length = 1230
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + G G VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1077 NMEHWTMHFDGSKRLS--GTGVGVVLISPTGE--RLSYILWIHFSASHNVAEYEALLHGL 1132
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+
Sbjct: 1133 RIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLRH 1192
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1193 NNEAADRLANFG 1204
>gi|260578172|ref|ZP_05846092.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
gi|258603711|gb|EEW16968.1| ribonuclease HI [Corynebacterium jeikeium ATCC 43734]
Length = 437
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ---- 233
+E DG S+GNPG AG G+ + D V E + ATNNVAEY+ LI L+ A++
Sbjct: 5 VECDGGSRGNPGIAGCGSSVLEGDQEVAARWEFIAKATNNVAEYQGLINALELAIEVAKM 64
Query: 234 ----KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
G I+V+ DSKLV Q+ G WKI + ++ L KEL+ + N + R
Sbjct: 65 RGVAAGDLEIQVRMDSKLVVEQMSGRWKIKHPDMKPLAARVKELEATLAAVTYNWVPRAQ 124
Query: 290 NSEADAQANMGI 301
N AD AN +
Sbjct: 125 NKRADELANRAM 136
>gi|377573598|ref|ZP_09802654.1| putative ribonuclease H/acid phosphatase [Mobilicoccus pelagius
NBRC 104925]
gi|377537713|dbj|GAB47819.1| putative ribonuclease H/acid phosphatase [Mobilicoccus pelagius
NBRC 104925]
Length = 461
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGY 236
+E DG S+GNPG AG GA++R E SV R L +G +NNVAEY LI+GL AL+
Sbjct: 9 VEADGGSRGNPGVAGYGALVR-EGRSVLRELAAPLGKESNNVAEYTGLIVGLGAALEIAA 67
Query: 237 KH---IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF----QSFQINHILRNL 289
I V+ DSKLV Q+ G WKI + ++ L +EA+ L S I R
Sbjct: 68 GEPVAIDVRMDSKLVVEQMSGRWKIKHADMQRLAREARALVADVVANGGSVDFTWIPRAE 127
Query: 290 NSEADAQANMGI 301
N ADA +N G+
Sbjct: 128 NKAADALSNEGM 139
>gi|159039131|ref|YP_001538384.1| phosphoglycerate mutase [Salinispora arenicola CNS-205]
gi|157917966|gb|ABV99393.1| Phosphoglycerate mutase [Salinispora arenicola CNS-205]
Length = 402
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED-GSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+RA D G V R +G ATNNVAEYR LI GL+ A +
Sbjct: 6 VVVEADGGSRGNPGPAGYGAVVRAPDTGEVLAERSAAIGTATNNVAEYRGLIAGLEAAAE 65
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
G + + DSKLV Q+ G W+I + L L +A L +F + + I R+ N
Sbjct: 66 LGAAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVGRFTAVRFTWIPRDRN 122
>gi|108711454|gb|ABF99249.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1552
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1007 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1062
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N A
Sbjct: 1063 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAA 1122
Query: 294 DAQANMG 300
D AN G
Sbjct: 1123 DRLANFG 1129
>gi|5902445|dbj|BAA84458.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1032
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQKG 235
T+ FDG+ + + GAG VL + G + +T +NVAEY AL+ GL+ A+ G
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTGERLSYVLWIHFSTSHNVAEYEALLHGLRIAISLG 516
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N AD
Sbjct: 517 IKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADR 576
Query: 296 QANMG 300
AN G
Sbjct: 577 LANFG 581
>gi|71907016|ref|YP_284603.1| ribonuclease H [Dechloromonas aromatica RCB]
gi|71846637|gb|AAZ46133.1| Ribonuclease H [Dechloromonas aromatica RCB]
Length = 216
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 172 NCYSCTLEFDGASK-GNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKY 230
N + FDGA+K NPG G G +L+ G + E +G TNN AEY AL+ L
Sbjct: 2 NATTWHAWFDGATKHTNPGIRGVGGLLKGPAGERIEISEDIGEGTNNEAEYAALMAVLDA 61
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
A+ + + V GDS+LV Q+ G W IN + L +CK + L + + I R N
Sbjct: 62 AVAAKVQDLIVYGDSQLVIKQVNGEWLINAKGLVPMCKTVRRLMAQIPKVSLAWIPREEN 121
Query: 291 SEADA 295
+EADA
Sbjct: 122 TEADA 126
>gi|126178291|ref|YP_001046256.1| ribonuclease H [Methanoculleus marisnigri JR1]
gi|125861085|gb|ABN56274.1| ribonuclease H [Methanoculleus marisnigri JR1]
Length = 142
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+ TL DGAS+GNPG A V+ DGSV R G +G ATNNVAEY A+I GL A +
Sbjct: 6 AVTLYTDGASRGNPGDAAWAYVI-VRDGSVVAGRSGYIGTATNNVAEYHAVINGLDAARE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
+ V+ DS+LV Q+ G ++I ++LAGL +E + F + + R
Sbjct: 65 FTGGRLEVRSDSELVVRQLTGRYRITKEHLAGLAEEVRRRMRHFAEVRFESVPR 118
>gi|54287556|gb|AAV31300.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291739|gb|AAV32108.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1988
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1415 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1470
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E + L++KF +++H+LR+ N A
Sbjct: 1471 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRRLEDKFDGLELSHVLRHNNEAA 1530
Query: 294 DAQANMG 300
D N G
Sbjct: 1531 DRLTNFG 1537
>gi|423350371|ref|ZP_17328024.1| hypothetical protein HMPREF9719_00319 [Turicella otitidis ATCC
51513]
gi|404387629|gb|EJZ82738.1| hypothetical protein HMPREF9719_00319 [Turicella otitidis ATCC
51513]
Length = 420
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 173 CYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI----ATNNVAEYRALILGL 228
+ L+ DG S+GNPG AG+G+V+ AED LRE + TNNVAEY+ L+ GL
Sbjct: 2 ARTVILQADGGSRGNPGIAGSGSVIFAEDHETV-LRELSYVFGEKVTNNVAEYQGLVNGL 60
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
A + G +RV DSKLV Q+ G W+I + ++ L AK+L E+ + R
Sbjct: 61 NAARELGATTVRVFLDSKLVVEQMTGRWRIKHADMKRLATIAKKLGEEIGEVTYKWVPRA 120
Query: 289 LNSEAD 294
N+ AD
Sbjct: 121 KNARAD 126
>gi|50355721|gb|AAT75246.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1512
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 967 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1022
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N A
Sbjct: 1023 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAA 1082
Query: 294 DAQANMG 300
D AN G
Sbjct: 1083 DRLANFG 1089
>gi|408532304|emb|CCK30478.1| hypothetical protein BN159_6099 [Streptomyces davawensis JCM 4913]
Length = 396
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+ A G R E +G+ TNNVAEYR L+ GL+ AL
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAERSEFLGVVTNNVAEYRGLLAGLRAALDLD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+ V+ DSKLV Q+ G WKI + ++ L EA + F ++ + I R N
Sbjct: 66 PTASVHVRMDSKLVVEQMSGRWKIKHPDMKPLAMEASRV---FPPERVTYEWIPREQNKH 122
Query: 293 ADAQAN 298
AD AN
Sbjct: 123 ADRLAN 128
>gi|448823948|ref|YP_007417115.1| ribonuclease HI [Corynebacterium urealyticum DSM 7111]
gi|448277445|gb|AGE36869.1| ribonuclease HI [Corynebacterium urealyticum DSM 7111]
Length = 435
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 177 TLEFDGASKGNPGQAGAGAVLR----AEDGSVYRLREGVGIATNNVAEYRALILGLKYAL 232
++E DG S+GNPG AG G+ ++ AE G V++ + ATNNVAEY+ LI GL A+
Sbjct: 4 SVECDGGSRGNPGPAGTGSSVKDAAGAEVGCVWQF---IKHATNNVAEYQGLINGLNLAV 60
Query: 233 ----QKGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
Q+G K + V+ DSKLV Q+ G WKI + ++ L +E K ++ +
Sbjct: 61 EIAEQQGVKPGSLSVDVRMDSKLVVEQMSGRWKIKHPDMKPLAQEVKRIEGQLAQVSYTW 120
Query: 285 ILRNLNSEADAQANMGIYLKDG 306
+ R N+ AD AN + ++G
Sbjct: 121 VPRAQNARADELANRAMDEREG 142
>gi|172040977|ref|YP_001800691.1| bifunctional RNase H/acid phosphatase [Corynebacterium urealyticum
DSM 7109]
gi|171852281|emb|CAQ05257.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 435
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 177 TLEFDGASKGNPGQAGAGAVLR----AEDGSVYRLREGVGIATNNVAEYRALILGLKYAL 232
++E DG S+GNPG AG G+ ++ AE G V++ + ATNNVAEY+ LI GL A+
Sbjct: 4 SVECDGGSRGNPGPAGTGSSVKDAAGAEVGCVWQF---IKHATNNVAEYQGLINGLNLAV 60
Query: 233 ----QKGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
Q+G K + V+ DSKLV Q+ G WKI + ++ L +E K ++ +
Sbjct: 61 EIAEQQGVKPGSLSVDVRMDSKLVVEQMSGRWKIKHPDMKPLAQEVKRIEGQLAQVSYTW 120
Query: 285 ILRNLNSEADAQANMGIYLKDG 306
+ R N+ AD AN + ++G
Sbjct: 121 VPRAQNARADELANRAMDEREG 142
>gi|448362254|ref|ZP_21550865.1| ribonuclease H [Natrialba asiatica DSM 12278]
gi|445648775|gb|ELZ01723.1| ribonuclease H [Natrialba asiatica DSM 12278]
Length = 197
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ DG V + +G ATNN AEY ALI L+ A GY +
Sbjct: 73 FDGGARGNPGPAGIGWVIVTGDGIVAEGSKRIGRATNNQAEYEALIAALEAARDYGYDEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + N+ L EL +F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNDPTLREKRVTVHELLTEFDEWTLEHVPREVNSRADELAN 191
>gi|51038246|gb|AAT94049.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1844
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ G + A+
Sbjct: 1371 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGPRIAIS 1426
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1427 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1486
Query: 294 DAQANMG 300
D AN G
Sbjct: 1487 DRLANFG 1493
>gi|333978202|ref|YP_004516147.1| ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821683|gb|AEG14346.1| ribonuclease H [Desulfotomaculum kuznetsovii DSM 6115]
Length = 145
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
FDG S+GNPG+A GA L E+G V + E VG+ T+N AEY ALI L+ ++ K
Sbjct: 18 FDGVSRGNPGEAAVGAYLVDENGEVVWEKSERVGVHTSNEAEYLALIALLEEVARRDIKE 77
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
I V GDS+LV Q+ G W IN+ +L L + A L + + ++ + R N AD AN
Sbjct: 78 ITVYGDSQLVINQVNGHWNINHAHLYELYRRADRLM-RGRKVRLVWVPREKNMRADKLAN 136
>gi|315504418|ref|YP_004083305.1| phosphoglycerate mutase [Micromonospora sp. L5]
gi|315411037|gb|ADU09154.1| Phosphoglycerate mutase [Micromonospora sp. L5]
Length = 382
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYAL 232
+ +E DG S+GNPG AG GAV+R E G V R E +G ATNNVAEYR LI GL+ A
Sbjct: 5 AVVIEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAAA 64
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
+ G + + DSKLV Q+ G W+I + L L +A L +F + + + R N
Sbjct: 65 ELGAAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAAVRFTWVPRERN 122
>gi|48475214|gb|AAT44283.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1741
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG L + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1361 TMHFDGSKRLS--GTGAGGFLISPTGE--RLSYVLWIHFFASHNVAEYEALLHGLRIAIS 1416
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G +H+ V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N A
Sbjct: 1417 LGIRHLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLWHNNEAA 1476
Query: 294 DAQANMG 300
D AN G
Sbjct: 1477 DRLANFG 1483
>gi|110289671|gb|ABG66296.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQK 234
T+ FDG+ + GAG VL + G Y L + A++NVAEY AL+ GL+ A+
Sbjct: 1075 TMHFDGSKRLT--GTGAGVVLISPTGERLSYVLWKHFS-ASHNVAEYEALLHGLRIAISL 1131
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1132 GIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAAD 1191
Query: 295 AQANMG 300
AN G
Sbjct: 1192 RLANFG 1197
>gi|31432019|gb|AAP53711.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1725
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1219 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1274
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1275 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNETA 1334
Query: 294 DAQANMG 300
+ AN G
Sbjct: 1335 NRLANFG 1341
>gi|13489188|gb|AAK27822.1|AC022457_25 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1720
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGY 236
FDG+ + GAG VL + G RL + + I A++NVAEY AL+ GL+ A+ G
Sbjct: 1183 FDGSKRLT--GTGAGVVLISPTGE--RLSDVLWIHFSASHNVAEYEALLHGLRIAISLGI 1238
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1239 RRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRL 1298
Query: 297 ANMG 300
AN G
Sbjct: 1299 ANFG 1302
>gi|408677713|ref|YP_006877540.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
gi|328882042|emb|CCA55281.1| Phosphoglycerate mutase family [Streptomyces venezuelae ATCC 10712]
Length = 499
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYA---L 232
+E DG S+GNPG AG GAV+ ++ E +G+ATNNVAEY+ L+ GLK A
Sbjct: 11 VEADGGSRGNPGPAGYGAVVLDPVTGETLAEAAEYIGVATNNVAEYKGLVAGLKAARELF 70
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
H+R+ DSKLV Q+ G WKI + ++ L EA + F + ++ + I R N
Sbjct: 71 PDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAGRV---FPAGRVRYEWIPRERN 125
Query: 291 SEADAQAN 298
AD AN
Sbjct: 126 KHADRLAN 133
>gi|77549440|gb|ABA92237.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1646
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+++ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1354 TMHFDGSNRLS--GTGAGVVLISLTGE--RLCYVLWIHFSASHNVAEYEALLHGLRIAIS 1409
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1410 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDRLELTHVLRHNNEAA 1469
Query: 294 DAQANMG 300
D AN G
Sbjct: 1470 DRLANFG 1476
>gi|332706320|ref|ZP_08426383.1| riibonuclease HI [Moorea producens 3L]
gi|332354869|gb|EGJ34346.1| riibonuclease HI [Moorea producens 3L]
Length = 138
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
+ FDG SK Q+ GA+++ + G VY + + VG T N EY LILGL+ L+ G K
Sbjct: 11 IHFDGVSKRRTNQSACGAIIQYQ-GEVYPVSQYVGFTTQNQTEYMGLILGLQKTLKLGAK 69
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
++ GD +LV Q+ G + + N NL AK L +K +++ I + N EAD A
Sbjct: 70 QAKIYGDCELVINQLHGDYMVKNNNLVSFHTRAKTLLDKLDFYELIWINKTQNLEADQLA 129
Query: 298 N 298
N
Sbjct: 130 N 130
>gi|77552456|gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIANS 514
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 515 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 574
Query: 294 DAQANMG 300
D AN G
Sbjct: 575 DRLANFG 581
>gi|302869110|ref|YP_003837747.1| phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
gi|302571969|gb|ADL48171.1| Phosphoglycerate mutase [Micromonospora aurantiaca ATCC 27029]
Length = 377
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV+R E G V R E +G ATNNVAEYR LI GL+ A + G
Sbjct: 3 IEADGGSRGNPGPAGYGAVVRDPETGEVLAERSESIGTATNNVAEYRGLIAGLEAAAELG 62
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
+ + DSKLV Q+ G W+I + L L +A L +F + + + R N
Sbjct: 63 AAEVEARMDSKLVVEQMCGRWQIKHPGLRPLAAQAAGLVSRFAAVRFTWVPRERN 117
>gi|345852191|ref|ZP_08805141.1| bifunctional RNase H/acid phosphatase [Streptomyces zinciresistens
K42]
gi|345636325|gb|EGX57882.1| bifunctional RNase H/acid phosphatase [Streptomyces zinciresistens
K42]
Length = 395
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-- 233
+E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEYR L+ GL+ A
Sbjct: 6 VEADGGSRGNPGPAGYGAVVVDAATGRTLAEAAEYIGVATNNVAEYRGLLAGLRAARDLD 65
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
H+R+ DSKLV Q+ G WKI + ++ L EA ++ F + ++ + I R N
Sbjct: 66 PAAAVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAFEASKV---FPADRVTYEWIPRERN 120
Query: 291 SEADAQAN 298
AD AN
Sbjct: 121 KHADRLAN 128
>gi|291439957|ref|ZP_06579347.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342852|gb|EFE69808.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 400
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVLR--AEDGSVYRLREGVGIATNNVAEYRALILGLK--YAL- 232
+E DG S+GNPG AG GAV+ A ++ E +G+ATNNVAEYR L+ GL+ +AL
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLAETAEYLGVATNNVAEYRGLLAGLRAAHALD 65
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+ H+R+ DSKLV Q+ G WKI + ++ L +A + F ++ + I R N
Sbjct: 66 PRATVHVRM--DSKLVIEQMTGRWKIKHPDMKPLAAQAARV---FPPERVTYEWIPRERN 120
Query: 291 SEADAQAN 298
AD AN
Sbjct: 121 KHADRLAN 128
>gi|448406248|ref|ZP_21572770.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
gi|445678087|gb|ELZ30582.1| ribonuclease H [Halosimplex carlsbadense 2-9-1]
Length = 134
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 176 CTLEFDGASK-GNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYA 231
+ FDG ++ NPG + G ++ +D + +EG +G +TNN EY ALI GL+ A
Sbjct: 7 AVIHFDGGTRPDNPGPSAIGYIVETDDWT----KEGNDHIGESTNNRTEYHALIRGLEVA 62
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+K + +GDS+++ Q++G + +N L L +EL +F+ F+I HI R N
Sbjct: 63 SEKRCTEVEARGDSEVIVKQVRGEYGVNQPELRPLRDRVQELANEFEQFEIQHIPREENW 122
Query: 292 EAD 294
EAD
Sbjct: 123 EAD 125
>gi|108706113|gb|ABF93908.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 459 TVHFDGSKRLT--GTGAGVVLIFPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 514
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 515 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 574
Query: 294 DAQANMG 300
D AN G
Sbjct: 575 DRLANFG 581
>gi|358456704|ref|ZP_09166926.1| Phosphoglycerate mutase [Frankia sp. CN3]
gi|357080025|gb|EHI89462.1| Phosphoglycerate mutase [Frankia sp. CN3]
Length = 389
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A+ G+V R G +G+ATNNVAEY+ LI GL+ A +
Sbjct: 6 IVVEADGGSRGNPGPAGYGAVVRDADSGAVLAERAGAIGVATNNVAEYQGLIAGLRAAAE 65
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNL 263
+ V+ DSKLV Q+ G WKI + ++
Sbjct: 66 VAPDADVEVRMDSKLVVEQMSGRWKIKHPSM 96
>gi|334337365|ref|YP_004542517.1| phosphoglycerate mutase [Isoptericola variabilis 225]
gi|334107733|gb|AEG44623.1| Phosphoglycerate mutase [Isoptericola variabilis 225]
Length = 392
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R A+ G+V R G +G +TNNVAEY L+ GL+ A +
Sbjct: 9 VEADGGSRGNPGPAGWGALVRDADSGAVLAERAGYLGESTNNVAEYSGLVAGLRAAREVD 68
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
H+ V+ DS+LV Q+ G W+I + L L +EA + Q + R+ N+ AD
Sbjct: 69 PDAHVLVRMDSRLVVEQMTGRWQIKHAALRELAREAASVLPADQ-VAYEWVPRSENAAAD 127
Query: 295 AQAN 298
AN
Sbjct: 128 RLAN 131
>gi|448358871|ref|ZP_21547545.1| ribonuclease H [Natrialba chahannaoensis JCM 10990]
gi|445644551|gb|ELY97564.1| ribonuclease H [Natrialba chahannaoensis JCM 10990]
Length = 197
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ +G V + +G ATNN AEY ALI L+ A Y I
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEGIVAEGSKRIGRATNNQAEYEALIAALEAARDYDYDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADELAN 191
>gi|448728118|ref|ZP_21710450.1| ribonuclease H [Halococcus saccharolyticus DSM 5350]
gi|445797552|gb|EMA48023.1| ribonuclease H [Halococcus saccharolyticus DSM 5350]
Length = 197
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
+CY FDGAS+GNPG A G V+ +G V E + TNN AEY AL+ L A
Sbjct: 70 HCY-----FDGASRGNPGPAAIGWVIVTSEGIVDEGSERIDDTTNNRAEYEALLRVLGVA 124
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ + V+GDS+LV Q++G W N L +EL + F + I H+ R N
Sbjct: 125 REYDFGTADVRGDSQLVVEQVRGAWNTNEPALRERRVRVRELLDGFDDWSIEHVPREAND 184
Query: 292 EADAQAN 298
AD AN
Sbjct: 185 RADGLAN 191
>gi|359689576|ref|ZP_09259577.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418749473|ref|ZP_13305761.1| ribonuclease HI [Leptospira licerasiae str. MMD4847]
gi|418759219|ref|ZP_13315399.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384113710|gb|EID99974.1| ribonuclease HI [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274358|gb|EJZ41676.1| ribonuclease HI [Leptospira licerasiae str. MMD4847]
Length = 131
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG + G + E+ ++ + + TNN+AE+ AL G++Y L +G I
Sbjct: 9 DGASKGNPGPSSIGVAVYEEETEIHSISSRISDGTNNMAEWAALEAGIEYCLSQGAGEIT 68
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
DS+LV Q +G +++ + +L ++ K L K + F I H+ R N AD AN+
Sbjct: 69 AYLDSELVVKQFKGEYRVKSPHLQIAKEKVKALTSKLKLFTIYHVPREKNKRADKLANLA 128
Query: 301 I 301
Sbjct: 129 F 129
>gi|452957940|gb|EME63297.1| bifunctional RNase H/acid phosphatase [Rhodococcus ruber BKS 20-38]
Length = 361
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ A+ +V R +G ATNNVAEY+ LI GL A +
Sbjct: 4 VVVEADGGSRGNPGPAGYGAVVFDADHETVLAERSASIGRATNNVAEYQGLIAGLTAAAE 63
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + ++ L A+EL F + + R N+ A
Sbjct: 64 LGADEVDVRMDSKLVVEQMSGRWKIKHPDMIPLAARARELAAGFSRIEFAWVPRAENAYA 123
Query: 294 DAQAN 298
D AN
Sbjct: 124 DRLAN 128
>gi|22795272|gb|AAN08244.1| GAG-POL precursor [Oryza sativa Japonica Group]
gi|31430777|gb|AAP52643.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1032
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + RL + I A++NVAEY AL+ GL+ A+
Sbjct: 459 TMHFDGSKRLS--GTGAGVVLISPTRE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 514
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 515 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 574
Query: 294 DAQANMG 300
D AN G
Sbjct: 575 DRLANFG 581
>gi|145539484|ref|XP_001455432.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423240|emb|CAK88035.1| unnamed protein product [Paramecium tetraurelia]
Length = 754
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
P N Y TL FDGASK NPG AGAG L + + + + +G TNNVAE+ AL LG++
Sbjct: 617 PDNLY--TLYFDGASKSNPGPAGAGVALFDKMQQIKEITQPLGKQTNNVAEFLALFLGIR 674
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
Y L G ++ GDSKL+ + Q+L + + + F+ + HI RN
Sbjct: 675 YTLNLGINYLECFGDSKLIIDGMNNKINFKQQHLEDIRVAIYDYAQLFKMVRYTHISRNQ 734
Query: 290 NSEADAQA 297
N AD A
Sbjct: 735 NEIADKLA 742
>gi|357398989|ref|YP_004910914.1| hypothetical protein SCAT_1387 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337765398|emb|CCB74107.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 419
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVL-RAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+ AE G ++ E +G ATNNVAEYR LI GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVFDAETGETLVEAAEYLGTATNNVAEYRGLIAGLRAAHELD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+ V+ DSKLV Q+ G WKI + + L EA + F ++ + + R N
Sbjct: 66 PEARVEVRMDSKLVVEQMSGRWKIKHPGMRPLAAEA---RTAFAPERVTYQWVPRARNKH 122
Query: 293 ADAQAN 298
AD AN
Sbjct: 123 ADRLAN 128
>gi|398345071|ref|ZP_10529774.1| ribonuclease HI [Leptospira inadai serovar Lyme str. 10]
Length = 135
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DGASKGNPG + G + + ++ + E + TNN AE+ AL GL + L+
Sbjct: 5 TIFCDGASKGNPGPSSIGVAIFEGEEEIHSISERIKDGTNNTAEWAALEAGLLWCLENKA 64
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
++ DS+LV Q+ G +K+ + +L + L K SF+I H+LR N +AD
Sbjct: 65 SEVKAFLDSELVVKQVTGEYKVKSPHLIEAKRRVLALSSKLASFKIAHVLREKNKKADKL 124
Query: 297 ANMGI 301
AN+
Sbjct: 125 ANLAF 129
>gi|386355036|ref|YP_006053282.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365805544|gb|AEW93760.1| bifunctional RNase H/acid phosphatase [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 420
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVL-RAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+ AE G ++ E +G ATNNVAEYR LI GL+ A +
Sbjct: 7 VEADGGSRGNPGPAGYGAVVFDAETGETLVEAAEYLGTATNNVAEYRGLIAGLRAAHELD 66
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+ V+ DSKLV Q+ G WKI + + L EA + F ++ + + R N
Sbjct: 67 PEARVEVRMDSKLVVEQMSGRWKIKHPGMRPLAAEA---RTAFAPERVTYQWVPRARNKH 123
Query: 293 ADAQAN 298
AD AN
Sbjct: 124 ADRLAN 129
>gi|289579996|ref|YP_003478462.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|448281234|ref|ZP_21472541.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|289529549|gb|ADD03900.1| ribonuclease H [Natrialba magadii ATCC 43099]
gi|445579164|gb|ELY33560.1| ribonuclease H [Natrialba magadii ATCC 43099]
Length = 197
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG ++GNPG AG G V+ +G V + +G ATNN AEY ALI L+ A Y I
Sbjct: 73 FDGGARGNPGPAGIGWVIVTSEGIVAEGSKRIGRATNNQAEYEALIAALEAARDYDYDEI 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +NS AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYNTNNPELRERRVTVHELLRAFDEWTLEHVPREVNSRADELAN 191
>gi|344999384|ref|YP_004802238.1| phosphoglycerate mutase [Streptomyces sp. SirexAA-E]
gi|344315010|gb|AEN09698.1| Phosphoglycerate mutase [Streptomyces sp. SirexAA-E]
Length = 413
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ++ + + E +G+A+NNVAEYR LI GL A++
Sbjct: 7 LVVEADGGSRGNPGPAGYGAVVIDQETAQVLAETAEYIGVASNNVAEYRGLIAGLT-AVR 65
Query: 234 KGYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
+ +RV+ DSKLV Q+ G WKI + ++ L EA + S I R
Sbjct: 66 DLFPDTAVRVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAAGILPA-ASVTYEWIPRAE 124
Query: 290 NSEADAQAN--MGIYLKDGQVEAECSS 314
N AD AN M + GQ E S+
Sbjct: 125 NKHADRLANEAMDAGKRGGQWEPSSST 151
>gi|383651146|ref|ZP_09961552.1| bifunctional RNase H/acid phosphatase [Streptomyces chartreusis
NRRL 12338]
Length = 495
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQ-- 233
+E DG S+GNPG AG GAV+ A G R E +G+ATNNVAEYR L+ GL+ A +
Sbjct: 6 VEADGGSRGNPGPAGYGAVVSDAATGETLREAAEYLGVATNNVAEYRGLVAGLRAAHELD 65
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
H+R+ DSKLV Q+ G W+I + ++ L A + F ++ + I R N
Sbjct: 66 PAATVHVRM--DSKLVIEQMSGRWQIKHPDMKPLAAAAARI---FPPGRVTYEWIPRERN 120
Query: 291 SEADAQAN 298
AD AN
Sbjct: 121 KHADRLAN 128
>gi|77556713|gb|ABA99509.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 2003
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1544 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1599
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + ++GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N A
Sbjct: 1600 LGIHRLIIRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAA 1659
Query: 294 DAQANMG 300
D AN G
Sbjct: 1660 DRLANFG 1666
>gi|289762391|ref|ZP_06521769.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289709897|gb|EFD73913.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
Length = 363
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 182 GASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
GAS NPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++ G
Sbjct: 10 GAS--NPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEA 67
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ AD AN
Sbjct: 68 AVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAN 126
>gi|110289223|gb|AAP54205.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1734
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 191 AGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 247
GAG VL + G RL + + I A++NVAEY AL+ GL+ A+ G + + V+GDS+L
Sbjct: 1202 TGAGVVLISPTGE--RLSDVLWIHFSASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQL 1259
Query: 248 VCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V Q+ W + N+ +E ++L++KF ++ H+LR+ N AD AN G
Sbjct: 1260 VVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRLANFG 1312
>gi|21220768|ref|NP_626547.1| bifunctional RNase H/acid phosphatase [Streptomyces coelicolor
A3(2)]
gi|7619754|emb|CAB88177.1| putative bifunctional protein (ribonuclease H/phosphoglycerate
mutase) [Streptomyces coelicolor A3(2)]
Length = 497
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILG 227
P +E DG S+GNPG AG GAV+ ++ E +G+ TNNVAEYR L+ G
Sbjct: 6 PRPAREFVVEADGGSRGNPGPAGYGAVVLDPVTGEALVEAAEYLGVVTNNVAEYRGLLAG 65
Query: 228 LKYALQ---KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
L+ A + H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ +
Sbjct: 66 LRAAAELDPDATVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTY 120
Query: 285 --ILRNLNSEADAQAN 298
I R N AD AN
Sbjct: 121 EWIPRASNKHADRLAN 136
>gi|254386860|ref|ZP_05002147.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
gi|194345692|gb|EDX26658.1| phosphoglycerate mutase [Streptomyces sp. Mg1]
Length = 246
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG G+V L G R E +G+ATNNVAEY+ LI GLK A +
Sbjct: 52 VEADGGSRGNPGPAGYGSVVLDPATGETLAERAEYIGVATNNVAEYKGLIAGLKAARELA 111
Query: 236 Y-KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEA 293
+ V+ DSKLV Q+ G WKI + ++ L EA + + Q ++Q I R N A
Sbjct: 112 PDAQVLVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAATVLPRSQVTYQW--IPREQNKHA 169
Query: 294 DAQAN 298
D AN
Sbjct: 170 DRLAN 174
>gi|116309689|emb|CAH66737.1| H0404F02.13 [Oryza sativa Indica Group]
Length = 749
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 347 TMHFDGSKRLR--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 402
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 403 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEVA 462
Query: 294 DAQANMG 300
D AN G
Sbjct: 463 DRLANFG 469
>gi|383807457|ref|ZP_09963017.1| ribonuclease H [Candidatus Aquiluna sp. IMCC13023]
gi|383298811|gb|EIC91426.1| ribonuclease H [Candidatus Aquiluna sp. IMCC13023]
Length = 368
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS+GNPG A G + E GS + E +G TNN AEY+ +I L++ ++ +
Sbjct: 7 DGASRGNPGPASYGVHIEDESGSTIADFGEALGNQTNNYAEYQGVIAALRFLTTTDHRLV 66
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
++ DSKLV Q+ G WK+ + + L EA +L F ++ I R+ N+ ADA AN
Sbjct: 67 TIRLDSKLVVEQLSGRWKVKSPEIRELVFEASQLLGAFD-VKLEWIPRDKNTFADANANK 125
Query: 300 GI 301
+
Sbjct: 126 AL 127
>gi|300780762|ref|ZP_07090616.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
gi|300532469|gb|EFK53530.1| ribonuclease HI [Corynebacterium genitalium ATCC 33030]
Length = 383
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL-RAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
TL DG S+GNPG AG+G+VL A ++ + VG ++NNVAEY L+ GL+ A
Sbjct: 3 VTLYTDGGSRGNPGVAGSGSVLYDASGATLAEIAYVVGKKSSNNVAEYCGLLRGLEAARD 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V DSKLV Q+ G WKI + ++ L EA++L F S + R N +A
Sbjct: 63 LGATDVDVFMDSKLVVEQMAGRWKIKHPDMKKLAFEARDLAAGFDSVTYTWVPRAKNKKA 122
Query: 294 DAQANM 299
D +N+
Sbjct: 123 DELSNV 128
>gi|50897347|gb|AAT85798.1| GAG-POL protein, putative [Oryza sativa Japonica Group]
gi|108709085|gb|ABF96880.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 403
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG SK G GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 241 TMHFDG-SKRLTG-TGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIC 296
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E +L+ KF ++ H+LR+ N A
Sbjct: 297 LGIRRLIVRGDSQLVVNQVMKEWSCPDDNMTAYRQEVHKLENKFDGLELTHVLRHNNEAA 356
Query: 294 DAQANMG 300
D AN G
Sbjct: 357 DRLANFG 363
>gi|418474679|ref|ZP_13044154.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
coelicoflavus ZG0656]
gi|371544694|gb|EHN73379.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
coelicoflavus ZG0656]
Length = 174
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 177 TLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ- 233
+E DG S+GNPG AG GAV+ A S+ E +G+ TNNVAEYR L+ GL+ A +
Sbjct: 16 VVEADGGSRGNPGPAGYGAVVLDPATGESLVEAAEYLGVVTNNVAEYRGLLAGLRAAREL 75
Query: 234 --KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNL 289
H+R+ DSKLV Q+ G WKI + ++ L EA + F ++ + I R
Sbjct: 76 DPDAVVHVRM--DSKLVVEQMSGRWKIKHPDMKPLAAEAARV---FPPGRVTYEWIPRAS 130
Query: 290 NSEADAQAN 298
N AD AN
Sbjct: 131 NKHADRLAN 139
>gi|54287555|gb|AAV31299.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54291738|gb|AAV32107.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1857
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GA VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1284 TMHFDGSKRLT--GTGARVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1339
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1340 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1399
Query: 294 DAQANMG 300
D AN G
Sbjct: 1400 DRLANFG 1406
>gi|18266640|gb|AAL67586.1|AC018929_8 putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|31433656|gb|AAP55140.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 526 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 581
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 582 LSIRRLIVRGDSQLVVNQVMQEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 641
Query: 294 DAQANMG 300
D AN G
Sbjct: 642 DRLANFG 648
>gi|55168013|gb|AAV43881.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I ++NVAEY AL+ GL+ A+
Sbjct: 1165 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSVSHNVAEYEALLHGLRIAIS 1220
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G +H+ V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N A
Sbjct: 1221 LGIQHLIVRGDSQLVVNQVMKEWSCLDDNMTTYRQEVCKLEDKFDGLELTHVLRHNNEAA 1280
Query: 294 DAQANMGIY 302
D AN +
Sbjct: 1281 DKLANFAPF 1289
>gi|32488503|emb|CAE03255.1| OSJNBa0011J08.10 [Oryza sativa Japonica Group]
Length = 788
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG +L + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 427 TMHFDGSKRLT--GTGAGVILISPTGE--RLSYVLWIYFSASHNVAEYEALLHGLRIAIS 482
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 483 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEVA 542
Query: 294 DAQANMG 300
D AN G
Sbjct: 543 DRLANFG 549
>gi|62734207|gb|AAX96316.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77548941|gb|ABA91738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1092 TMHFDGSKRLT--GTGAGVVLISPIGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1147
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + + +E ++L++KF ++ H+LR+ N A
Sbjct: 1148 LGIRRLIVRGDSQLVVNQVMKEWSCLDDTMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1207
Query: 294 DAQANMGIYLKDGQVEAECS 313
D AN G + + CS
Sbjct: 1208 DRLANFGSKREAAPSDQMCS 1227
>gi|116308914|emb|CAH66045.1| OSIGBa0107A02.6 [Oryza sativa Indica Group]
Length = 1009
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + G G VL + G RL + I A++NVAEY AL+ GL
Sbjct: 856 NMEHWTMHFDGSKRLS--GTGVGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 911
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+
Sbjct: 912 RIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFDGLELTHVLRH 971
Query: 289 LNSEADAQANMG 300
N A+ AN G
Sbjct: 972 NNEAANRLANFG 983
>gi|448298664|ref|ZP_21488692.1| ribonuclease H [Natronorubrum tibetense GA33]
gi|445591334|gb|ELY45540.1| ribonuclease H [Natronorubrum tibetense GA33]
Length = 197
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGA +GNPG A G V+ + DG V E +G ATNN AEY ALI L+ A G+ +
Sbjct: 73 FDGACRGNPGPAATGWVIVSGDGIVAEGGERIGTATNNQAEYEALIAALEAAKDYGFDEL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
V+GDS+L+ Q++G + NN L EL F + + H+ R +N AD AN
Sbjct: 133 HVRGDSELIVKQVRGEYDTNNPELREKRVTVHELLAAFDEWTLEHVPREVNDRADDLAN 191
>gi|77551287|gb|ABA94084.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1756
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NV EY AL+ GL+ A+
Sbjct: 1232 TMHFDGSKRLT--GTGAGVVLISLTGE--RLSYVLWIHFSASHNVVEYEALLHGLRIAVS 1287
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1288 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLKLTHVLRHNNEAA 1347
Query: 294 DAQANMG 300
D AN G
Sbjct: 1348 DRLANFG 1354
>gi|108710943|gb|ABF98738.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 952
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 444 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWINFSASHNVAEYEALLHGLRIAIS 499
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 500 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAD 559
Query: 294 DAQANMG 300
D AN G
Sbjct: 560 DRLANFG 566
>gi|152967278|ref|YP_001363062.1| phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
gi|151361795|gb|ABS04798.1| Phosphoglycerate mutase [Kineococcus radiotolerans SRS30216]
Length = 366
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG GAV++ A G V + E +G ATNNVAEYR L+ GL+ A
Sbjct: 7 VEADGGSRGNPGPAGYGAVVKDAATGEVLAEVAESIGRATNNVAEYRGLVAGLRAAQAVD 66
Query: 236 YK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNSEA 293
+ + V+ DSKLV Q+ G W++ + ++ L +EA+ L + F I R NS A
Sbjct: 67 PEASVEVRMDSKLVVEQMSGRWQVKHADMRALAQEARSLVRPGLVDF--GWIPRAQNSHA 124
Query: 294 D 294
D
Sbjct: 125 D 125
>gi|116309190|emb|CAH66285.1| OSIGBa0161P06.2 [Oryza sativa Indica Group]
Length = 1987
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1414 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFPASHNVAEYEALLHGLRIAIS 1469
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L++KF +++ +LR+ N A
Sbjct: 1470 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSLVLRHNNEAA 1529
Query: 294 DAQANMG 300
D AN G
Sbjct: 1530 DRLANFG 1536
>gi|397780724|ref|YP_006545197.1| ribonuclease HI [Methanoculleus bourgensis MS2]
gi|396939226|emb|CCJ36481.1| ribonuclease HI [Methanoculleus bourgensis MS2]
Length = 141
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+ TL DGAS+GNPG A V+ ++G++ R G +G ATNNVAEY A+I GL+ A
Sbjct: 6 TVTLYTDGASRGNPGDAAWAYVI-VQEGAIAASRSGYIGKATNNVAEYHAVINGLRAARA 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
+RV+ DS+LV Q+ G ++I ++LA L E ++L F + + R
Sbjct: 65 FTEGRLRVRSDSELVVRQLTGRYRIRKEHLAVLAGEVQQLARNFAEVRFESVPR 118
>gi|348687656|gb|EGZ27470.1| hypothetical protein PHYSODRAFT_453462 [Phytophthora sojae]
Length = 136
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIA----TNNVAEYRALILGLKYALQKG 235
DGAS+GNPG++G GA+L D S R L G TNN AEY L+L L+ A +
Sbjct: 8 DGASRGNPGRSGCGALL--VDPSTGRVLATGAKYVGDRETNNAAEYHGLLLALELAQRHE 65
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
H+ V DS+L+ Q+QG +++ NL L ++ KEL + +H+ R N+ AD
Sbjct: 66 AAHVHVLMDSQLIVRQMQGQYRVKAANLRRLHQQCKELSAELPHVTFSHVPREDNAAADR 125
Query: 296 QANMGI 301
AN I
Sbjct: 126 LANEAI 131
>gi|29788858|gb|AAP03404.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 930
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 422 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWINFSASHNVAEYEALLHGLRIAIS 477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N
Sbjct: 478 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAD 537
Query: 294 DAQANMG 300
D AN G
Sbjct: 538 DRLANFG 544
>gi|332670763|ref|YP_004453771.1| phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
gi|332339801|gb|AEE46384.1| Phosphoglycerate mutase [Cellulomonas fimi ATCC 484]
Length = 404
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+R A G V R + +G+A+NNVAEY L+ GL+ AL
Sbjct: 5 LVVEADGGSRGNPGPAGYGAVVRDAGTGDVLAERADFLGVASNNVAEYSGLVAGLRAALA 64
Query: 234 -KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ V+ DS+LV Q++G WKI + ++ E L + + + R N+
Sbjct: 65 IDPDARLEVRMDSQLVIEQMRGTWKIKHADMRRFADEVHALVDP-TTVTWTWVPRARNAA 123
Query: 293 ADAQANMGI 301
AD AN+ +
Sbjct: 124 ADRLANLAM 132
>gi|403714519|ref|ZP_10940422.1| putative ribonuclease H/acid phosphatase [Kineosphaera limosa NBRC
100340]
gi|403211452|dbj|GAB95105.1| putative ribonuclease H/acid phosphatase [Kineosphaera limosa NBRC
100340]
Length = 440
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 7/131 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLK-YALQK 234
+E DG S+GNPG AG GA++R A +G+V R E +G A+NNVAEY L+ GL+ L
Sbjct: 8 VEADGGSRGNPGVAGFGALVRDAANGAVLAERAEPLGKASNNVAEYTGLVAGLEEVELID 67
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF-QSFQI---NHILRNLN 290
+ V+ DSKLV Q+ G WKI ++++ L +A+ + + QS + I R N
Sbjct: 68 PSAAVEVRMDSKLVVEQMSGRWKIKHEDMKRLAADARAITTRLRQSGGVVVYTWIPRERN 127
Query: 291 SEADAQANMGI 301
ADA +N G+
Sbjct: 128 KAADALSNDGM 138
>gi|108709395|gb|ABF97190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1773
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1267 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1322
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+L Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 1323 LGIRRLIVRGDSQLGVNQVTKEWSCLDVNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1382
Query: 294 DAQANMGIYLK 304
D AN G L+
Sbjct: 1383 DRLANFGSKLE 1393
>gi|408828727|ref|ZP_11213617.1| bifunctional RNase H/acid phosphatase, partial [Streptomyces
somaliensis DSM 40738]
Length = 184
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ ++ E +G+ATNNVAEY+ L+ GL+ A +
Sbjct: 9 LIVEADGGSRGNPGPAGYGAVVLDPVSGEALVETAEYIGVATNNVAEYKGLLAGLRAARE 68
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+RV+ DSKLV Q+ G WKI + ++ L EA + + I R N
Sbjct: 69 LAPDASVRVRMDSKLVVEQMSGRWKIKHPDMKPLAAEAARIHPPGR-VTYEWIPREHNKH 127
Query: 293 ADAQAN 298
AD AN
Sbjct: 128 ADRLAN 133
>gi|77556935|gb|ABA99731.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1752
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A+++VAEY AL+ GL+ A+
Sbjct: 1354 TMHFDGSKRLT--GTGAGVVLISPTGE--RLGYVLWIPFSASHDVAEYEALLHGLRIAIS 1409
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N A
Sbjct: 1410 LGIRRLIVLGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAA 1469
Query: 294 DAQANMG 300
D AN G
Sbjct: 1470 DRLANFG 1476
>gi|357389334|ref|YP_004904173.1| putative ribonuclease H/acid phosphatase [Kitasatospora setae
KM-6054]
gi|311895809|dbj|BAJ28217.1| putative ribonuclease H/acid phosphatase [Kitasatospora setae
KM-6054]
Length = 384
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+R A+ G V E +G ATNNVAEYR LI GL+ A
Sbjct: 8 VEADGGSRGNPGPAGYGAVVRDADTGQVLAEAAEYIGHATNNVAEYRGLIAGLRAARDLD 67
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V+ DSKLV Q+ G W++ + + L EA+ + + + I R N +AD
Sbjct: 68 PDARVAVRMDSKLVVEQMSGRWQVKHPGMRPLAAEARGILPA-GNVTYDWIPRERNKDAD 126
Query: 295 AQAN 298
AN
Sbjct: 127 RLAN 130
>gi|108862665|gb|ABA98419.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1316
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1148 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYAALLHGLRIAIC 1203
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N A
Sbjct: 1204 LGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVCKLEDKFDGLELTHVLRHNNEAA 1263
Query: 294 DAQANMG 300
D AN G
Sbjct: 1264 DRLANFG 1270
>gi|41469126|gb|AAS07077.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708814|gb|ABF96609.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 516
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ L+ A+
Sbjct: 201 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHRLRIAIS 256
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 257 LGIRRLIVRGDSQLVVNQVMKKWSCLDDNMTAYRQEVRKLEDKFDGLELAHVLRHNNEAA 316
Query: 294 DAQANMG 300
D AN G
Sbjct: 317 DRLANFG 323
>gi|77554253|gb|ABA97049.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1399
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FD + + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1218 TMHFDESKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1273
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N A
Sbjct: 1274 LGIRRLTVRGDSQLVVNQVMKEWSCLHDNMTAYRQEVGKLEDKFDGLELTHVLRHNNEAA 1333
Query: 294 DAQANMG 300
D AN G
Sbjct: 1334 DRLANFG 1340
>gi|38347265|emb|CAE05312.2| OSJNBa0056L23.10 [Oryza sativa Japonica Group]
Length = 867
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQKG 235
T+ FDG+ + + +AG + E+ Y L + +T +NVAEY L+ GL+ + G
Sbjct: 316 TMHFDGSKRLSGTRAGVVLISPTEERLSYVL--WIHFSTSHNVAEYEVLLHGLRIVISLG 373
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V+GDS+LV Q+ W + N+ +E ++L++KF +++H+LR+ N AD
Sbjct: 374 IKRLIVRGDSQLVVNQVMKEWSCIDDNMTAYRQEVRKLEDKFDGLELSHVLRHNNEAADR 433
Query: 296 QANMG 300
AN G
Sbjct: 434 LANFG 438
>gi|40538963|gb|AAR87220.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|50582686|gb|AAT78756.1| putative retrotansposon gag protein [Oryza sativa Japonica Group]
gi|108709732|gb|ABF97527.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1389
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1102 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1157
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N A
Sbjct: 1158 LGIWRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNNEAA 1217
Query: 294 DAQANMG 300
D N G
Sbjct: 1218 DRLDNFG 1224
>gi|62732811|gb|AAX94930.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550198|gb|ABA92995.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1765
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQK 234
+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1168 MHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAISL 1223
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+L++ N AD
Sbjct: 1224 GIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLQHNNKAAD 1283
Query: 295 AQANMG 300
AN G
Sbjct: 1284 RLANFG 1289
>gi|77550752|gb|ABA93549.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1000
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG SK G AG VL + G RL + I A++NVAEY AL+ GL A+
Sbjct: 459 TMHFDG-SKRLSGTV-AGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLWIAIS 514
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ W + N+ +E ++L+ KF +++H+LR+ N A
Sbjct: 515 LGIKRLIVRGDSQLVVNQVMKKWSCLDDNMTAYRQEVRKLESKFDGLELSHVLRHNNEAA 574
Query: 294 DAQANMG 300
D AN G
Sbjct: 575 DRLANFG 581
>gi|32490368|emb|CAE05042.1| OSJNBa0049H08.3 [Oryza sativa Japonica Group]
gi|38346750|emb|CAD40760.2| OSJNBa0081G05.13 [Oryza sativa Japonica Group]
Length = 1065
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 177 TLEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYA 231
T+ FDG+ + GN GA VL + G RL + I A++NVAEY L+ GL+ A
Sbjct: 685 TMHFDGSKRLSGN----GARVVLISPTGE--RLSYVLWIRFSASHNVAEYEVLLHGLRIA 738
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N
Sbjct: 739 ISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNNE 798
Query: 292 EADAQANMG 300
AD AN G
Sbjct: 799 VADRLANFG 807
>gi|116309612|emb|CAH66667.1| OSIGBa0110B10.4 [Oryza sativa Indica Group]
Length = 1065
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 177 TLEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYA 231
T+ FDG+ + GN GA VL + G RL + I A++NVAEY L+ GL+ A
Sbjct: 685 TMHFDGSKRLSGN----GARVVLISPTGE--RLSYVLWIRFSASHNVAEYEVLLHGLRIA 738
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ G + + V+GDS+LV Q+ W + N+ +E ++L+++F ++ H+LR+ N
Sbjct: 739 ISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNNE 798
Query: 292 EADAQANMG 300
AD AN G
Sbjct: 799 VADRLANFG 807
>gi|452206209|ref|YP_007486331.1| ribonuclease H, type 1 [Natronomonas moolapensis 8.8.11]
gi|452082309|emb|CCQ35563.1| ribonuclease H, type 1 [Natronomonas moolapensis 8.8.11]
Length = 196
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS+GNPG A G V+ +DG V E +G ATNN AEY AL+ L+ A G++ +
Sbjct: 73 FDGASRGNPGPAAIGWVIVTDDGIVAEGSERIGRATNNQAEYEALLAALEAATDYGFEDL 132
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++GDS+L+ Q++G W N+ L +EL + ++H+ R +N AD AN
Sbjct: 133 VIKGDSQLIVKQVRGEWDANDPTLREKRVRVRELLRGVDEWSLDHVPREINDRADGLAN 191
>gi|453050156|gb|EME97706.1| bifunctional RNase H/acid phosphatase [Streptomyces mobaraensis
NBRC 13819 = DSM 40847]
Length = 408
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 173 CYSCTLEFDGASKGNPGQAGAGAV-LRAEDGSVY-RLREGVGIATNNVAEYRALILGLKY 230
+ +E DG S+GNPG AG GAV L A G V E +G ATNNVAEY+ LI GL+
Sbjct: 2 AHRFVVEADGGSRGNPGPAGYGAVVLDAATGEVLAEAAEYIGTATNNVAEYKGLIAGLEA 61
Query: 231 ALQ-KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILR 287
A I V+ DSKLV Q+ G WKI + ++ L A+ + F + ++ + I R
Sbjct: 62 ARALDPDADITVRMDSKLVVEQMSGRWKIKHPDMRPLAARARLV---FPADRVGYEWIPR 118
Query: 288 NLNSEADAQAN 298
N AD AN
Sbjct: 119 ERNKHADRLAN 129
>gi|89179427|gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
Length = 1189
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 178 LEFDGASKGNPG---QAGAGAVLRAEDGSVYRLREGVGIA---TNNVAEYRALILGLKYA 231
L FDGAS+ NP A G VL + +G V + G + TNNVAEY AL++G++ A
Sbjct: 628 LFFDGASRANPHGAITARVGVVLISPNGHV--IPRGFSLIEPCTNNVAEYNALLMGMQLA 685
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ +H+ GDS+L+ Q+QG +++ +++L + +KF+ F I +I R N+
Sbjct: 686 EELNIQHLEAYGDSQLIVNQVQGEYEVRHEDLIPYYFAVLKQAQKFECFFIEYIPRAQNA 745
Query: 292 EADAQANMGIYL 303
ADA A++ L
Sbjct: 746 YADALASLATSL 757
>gi|187251579|ref|YP_001876061.1| ribonuclease HI [Elusimicrobium minutum Pei191]
gi|186971739|gb|ACC98724.1| Ribonuclease HI [Elusimicrobium minutum Pei191]
Length = 194
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGV--GIATNNVAEYRALILGLKYALQ 233
+ DG S+GNPG + V++ G + +EGV GI TNN AE++AL+ A +
Sbjct: 3 VIINVDGGSRGNPGPGASAYVIKDAKGKII-AQEGVFLGICTNNEAEFKALLFAFGAAAK 61
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
HI++ DS+L+ Q G +KI + NL + +E ++ + F S QI H+ R N EA
Sbjct: 62 LKATHIQIYADSQLLVKQFLGEYKIKSPNLVPIMEEIRKKAKPFSSVQIAHVPREKNKEA 121
Query: 294 DAQANMGI 301
D AN+ +
Sbjct: 122 DKLANIAM 129
>gi|312197342|ref|YP_004017403.1| phosphoglycerate mutase [Frankia sp. EuI1c]
gi|311228678|gb|ADP81533.1| Phosphoglycerate mutase [Frankia sp. EuI1c]
Length = 388
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GA++R A+ G++ R G +G+ATNNVAEY+ LI GL+ A +
Sbjct: 5 VVIEADGGSRGNPGPAGYGALVRDADSGALLAERAGAIGVATNNVAEYQGLIAGLRAAAE 64
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNL 263
+ V+ DSKLV Q+ G WKI + +
Sbjct: 65 VAPDADVEVRMDSKLVVEQMSGRWKIKHPAM 95
>gi|38345918|emb|CAE04522.2| OSJNBb0076A11.6 [Oryza sativa Japonica Group]
Length = 1453
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + A A VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 902 TIHFDGSKRLT--GAEARVVLISPTGE--RLSYVLQIHFSASHNVAEYEALLHGLRIAIS 957
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 958 LGIRQLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAA 1017
Query: 294 DAQANMG 300
D AN G
Sbjct: 1018 DRLANFG 1024
>gi|239917465|ref|YP_002957023.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
gi|239838672|gb|ACS30469.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 322
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R G + R +G A+NNVAEY L+ GL+ A
Sbjct: 1 MEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 60
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 293
+ V DSKLV Q+ G WKI + ++ L EA+ L + S++ I RN N +A
Sbjct: 61 PEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARSVLPPERVSYEW--IPRNRNKDA 118
Query: 294 DAQAN--MGIYLKDGQVEAECS 313
D +N M + GQ +A S
Sbjct: 119 DRLSNEAMDAGARGGQWDAGAS 140
>gi|336325273|ref|YP_004605239.1| ribonuclease HI [Corynebacterium resistens DSM 45100]
gi|336101255|gb|AEI09075.1| ribonuclease HI [Corynebacterium resistens DSM 45100]
Length = 382
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 178 LEFDGASKGNPGQAGAGA-------VLRAEDGSVYRLREGVGIATNNVAEYRALILGLKY 230
LE DG S+GNPG AGAG+ +R E + E + ATNNVAEY L+ GLK
Sbjct: 5 LECDGGSRGNPGVAGAGSSIVDAASAVRGEKRELAAQWEHLDKATNNVAEYHGLVNGLKL 64
Query: 231 ALQKGYKH--------IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
A + K + V DSKL+ Q+ G WKI + ++ L +A+EL F +
Sbjct: 65 AAEVASKQGEKPSDVELDVFMDSKLIVEQMSGRWKIKHPDMKPLAAKAQELGAVFAAVNY 124
Query: 283 NHILRNLNSEADAQANMGIYLKDGQ 307
+ R N AD AN + DG+
Sbjct: 125 TWVPRAQNKRADELANRA--MDDGE 147
>gi|365866951|ref|ZP_09406543.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. W007]
gi|364003576|gb|EHM24724.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. W007]
Length = 446
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK-----Y 230
+E DG S+GNPG AG GAV+ A + E +G+ATNNVAEYR LI GL +
Sbjct: 3 VEADGGSRGNPGPAGYGAVVIDPATGEPLAETAEYIGVATNNVAEYRGLIAGLTAAKALF 62
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
+ V+ DSKLV Q+ G WKI + ++ L A + S I R N
Sbjct: 63 PDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAILPP-SSVTYEWIPRAQN 121
Query: 291 SEADAQANMGIYL-KDG-QVEAECSS 314
AD AN + +DG Q EA S+
Sbjct: 122 KHADRLANEAMDAGRDGRQWEASAST 147
>gi|449482774|ref|XP_004156399.1| PREDICTED: uncharacterized protein LOC101232754 [Cucumis sativus]
Length = 796
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVG-IATNNVAEYRALILGLKYALQKG 235
T+ FDGA + + AGAG VL + + + + + +NNV EY+ALI+ L+ AL+ G
Sbjct: 224 TMYFDGADRRS--GAGAGIVLVSLEKHMLPYSFALSELCSNNVVEYQALIISLQIALEIG 281
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
I V GDSKL+ Q+ + + +++L A++L EKF S + H R N ADA
Sbjct: 282 VSFIEVYGDSKLIINQLSLQYDVKHEDLKPYFAYARQLMEKFDSVMLEHFPRVENKRADA 341
Query: 296 QANMGIYL 303
AN+ L
Sbjct: 342 LANLATAL 349
>gi|62734445|gb|AAX96554.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550443|gb|ABA93240.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1701
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ DG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1177 TMHLDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1232
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+ DS+LV Q+ W + N+ +E ++L+ KF +++H+LR+ N A
Sbjct: 1233 LGIKRLIVRRDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLESKFAGLELSHVLRHNNEAA 1292
Query: 294 DAQANMG 300
D AN G
Sbjct: 1293 DRLANFG 1299
>gi|448377484|ref|ZP_21560180.1| ribonuclease H [Halovivax asiaticus JCM 14624]
gi|445655428|gb|ELZ08273.1| ribonuclease H [Halovivax asiaticus JCM 14624]
Length = 197
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 65/121 (53%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L +DG S+GNPG AG G VL DG V + +G ATNN AEY ALI L+ A + G+
Sbjct: 71 LYWDGGSRGNPGPAGIGWVLVTSDGIVAEGSDTIGEATNNQAEYEALIAALEAAREYGFD 130
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ +GDS+L+ Q+ G + N+ L A E F + I H+ R N AD A
Sbjct: 131 EVHCRGDSELIVKQVTGAYDTNDPVLREKRVTAVEHLSSFDEWTIEHVPREANEHADDLA 190
Query: 298 N 298
N
Sbjct: 191 N 191
>gi|108864374|gb|ABA93602.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1761
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A++NVAEY AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 1224 ASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKL 1283
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
++KF +++H+LR+ N AD AN G
Sbjct: 1284 EDKFDGLELSHVLRHNNEAADRLANFG 1310
>gi|77555134|gb|ABA97930.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 285
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FD SK G A AG VL + G RLR + I A++NV EY AL+ GL A+
Sbjct: 41 TMHFD-RSKRLLGTA-AGVVLISPTGE--RLRYVLWIHFSASHNVVEYEALLHGLWIAIS 96
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N A
Sbjct: 97 LGIRRLIVHGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEDKFNGLELTHVLRHNNEAA 156
Query: 294 DAQANMG 300
D AN G
Sbjct: 157 DRLANFG 163
>gi|406882482|gb|EKD30269.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 135
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++ NPG AG G + E+G + R + +GIATNN AEY+ + G++ ++ G I
Sbjct: 8 DGGARNNPGPAGIGVFITDENGKPLERRHKYLGIATNNQAEYQGALHGIRRGIELGATEI 67
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF-QSFQINHILRNLNSEADAQAN 298
++ DSKLV Q+ G +KI N L + +E ++L E + Q HI R N EAD +N
Sbjct: 68 ELRMDSKLVVEQLSGNFKIKNPELKIIFREIQDLLEAWCGRIQHIHIRREHNGEADRLSN 127
Query: 299 MGI 301
+ +
Sbjct: 128 VAM 130
>gi|19551096|gb|AAL91601.1|AC099400_7 Putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1416
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 201 DGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWK 257
DGS G GI ++NVAEY AL+ GL+ A+ G + + V+GDS+LV Q+ W
Sbjct: 1124 DGSKRLTGTGAGIHFSTSHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWS 1183
Query: 258 INNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ N+ +E ++L++KF ++ H+LR+ N AD AN G
Sbjct: 1184 CLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRLANFG 1226
>gi|182439007|ref|YP_001826726.1| bifunctional RNase H/acid phosphatase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178467523|dbj|BAG22043.1| putative bifunctional ribonuclease H/phosphoglycerate mutase
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 441
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK---- 229
+E DG S+GNPG AG GAV+ A + E +G+ATNNVAEYR LI GL
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 230 -YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ + V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAVLPP-SSVTYEWIPRA 125
Query: 289 LNSEADAQANMGIYL-KDG-QVEAECSS 314
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|411001679|ref|ZP_11378008.1| bifunctional RNase H/acid phosphatase [Streptomyces globisporus
C-1027]
Length = 413
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYA-- 231
+E DG S+GNPG AG GAV+ A + E +G+ATNNVAEYR LI GL A
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 232 -LQKGYKHIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ +R V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGEALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAILPP-SSVTYEWIPRA 125
Query: 289 LNSEADAQANMGIYL-KDG-QVEAECSS 314
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|294629067|ref|ZP_06707627.1| phosphoglycerate mutase [Streptomyces sp. e14]
gi|292832400|gb|EFF90749.1| phosphoglycerate mutase [Streptomyces sp. e14]
Length = 401
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK--YALQ 233
+E DG S+GNPG AG GAV+ A ++ E +G TNNVAEYR L+ GL+ +AL
Sbjct: 41 VEADGGSRGNPGPAGYGAVVLDPATGEALAEAAEYLGTVTNNVAEYRGLLAGLRAAHALD 100
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+ H+R+ DSKLV Q+ G WKI + +L L A + F ++ + I R N
Sbjct: 101 PEARVHVRM--DSKLVVEQMSGRWKIKHPDLKPLATMAARV---FPPDRVTYEWIPRERN 155
Query: 291 SEADAQAN 298
AD AN
Sbjct: 156 KHADRLAN 163
>gi|281414044|ref|ZP_06245786.1| ribonuclease HI [Micrococcus luteus NCTC 2665]
Length = 329
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R G + R +G A+NNVAEY L+ GL+ A
Sbjct: 8 VEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 67
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE-LKEKFQSFQINHILRNLNSEA 293
+ V DSKLV Q+ G WKI + ++ L EA+ L + S++ I RN N +A
Sbjct: 68 PEARVHVLMDSKLVVEQMSGRWKIKHDDMRRLAAEARSVLPPERVSYEW--IPRNRNKDA 125
Query: 294 DAQAN--MGIYLKDGQVEAECS 313
D +N M + GQ +A S
Sbjct: 126 DRLSNEAMDAGARGGQWDAGAS 147
>gi|387929455|ref|ZP_10132132.1| ribonuclease H [Bacillus methanolicus PB1]
gi|387586273|gb|EIJ78597.1| ribonuclease H [Bacillus methanolicus PB1]
Length = 133
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS G PG +GAG ++A G+V R +G TN+ AE+ A I ++ ++KGY+ +
Sbjct: 7 DGASAGTPGPSGAGIFIKAL-GNVERYSIPLGTMTNHEAEFHAFIKAMEICIEKGYRTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV I+ + + N+N A L K+A +L E+F F + I + N AD A M
Sbjct: 66 FRTDSELVNRAIEKEF-VKNKNYAPLLKKALKLSEQFDLFFMKWIPSSENKTADHLARMA 124
Query: 301 I 301
+
Sbjct: 125 V 125
>gi|18568257|gb|AAL75991.1|AF466204_6 putative GAG-POL precursor -orf2 protein [Sorghum bicolor]
Length = 678
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRA 223
LN SV ++ FDG+ N AG V +D Y LR + A+NNVAEY A
Sbjct: 539 LNEPSVSNTPDHWSMFFDGSLNINGAGAGILFVSPNKDKLRYVLR-ILFPASNNVAEYEA 597
Query: 224 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 283
+ G++ A++ G K + V GDS LV Q+ W ++ + CKE ++ K F +
Sbjct: 598 CLHGIRLAVELGVKRLYVHGDSALVINQLNKEWDTTHEKMDLYCKEIRKWKSNFYGIEYI 657
Query: 284 HILRNLNSEADAQANMG 300
H++R+ N ADA + +G
Sbjct: 658 HVVRDKNQAADALSKLG 674
>gi|302524447|ref|ZP_07276789.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
gi|302433342|gb|EFL05158.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. AA4]
Length = 380
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV++ A G V R E +G+ATNNVAEY L+ GL A +
Sbjct: 5 AIVEADGGSRGNPGPAGYGAVVKDASTGEVLAERHEYLGVATNNVAEYSGLVAGLAAAAE 64
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+ DSKLV Q+ G WKI + L L +A+E+ F+ I R NS A
Sbjct: 65 LGVSIVDVRMDSKLVVEQMSGRWKIKHAALQPLAAQAREIAAGFERVSYTWIPRAENSHA 124
Query: 294 DAQANMGI 301
D AN+ +
Sbjct: 125 DRLANVAM 132
>gi|415885233|ref|ZP_11547161.1| ribonuclease H [Bacillus methanolicus MGA3]
gi|387590902|gb|EIJ83221.1| ribonuclease H [Bacillus methanolicus MGA3]
Length = 129
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDGAS G PG +GAG ++ G+V R +G+ TN+ AE+ ALI ++ ++KGY+ +
Sbjct: 6 FDGASAGTPGPSGAGIFIKT-GGNVERYSIPLGLMTNHEAEFHALIKAMEICIEKGYRTV 64
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV I+ + + N+N A L ++ +L ++F F + I + N AD A M
Sbjct: 65 SFRTDSELVNRAIEKEF-VKNKNFAPLLEKILKLSDQFDLFFMKWIPSSENKTADILARM 123
Query: 300 GI 301
+
Sbjct: 124 AV 125
>gi|110288557|gb|ABB46646.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 574
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L A G ++ + ATNN AEY L++GL+ A+
Sbjct: 128 TWTMAFDGAF--NSQGAGAGFILTAPTGDQFKHAIHLDFRATNNTAEYEGLLVGLRAAIA 185
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+ DS+LV Q+ +K +N L E ++L+ KF ++ H+ R + E
Sbjct: 186 LGVKRLIVKRDSELVTNQVHKDYKCSNPKLTKYLAEVRKLERKFDGLEVRHVYRKDSVEP 245
Query: 294 DAQA 297
DA A
Sbjct: 246 DALA 249
>gi|326779661|ref|ZP_08238926.1| Phosphoglycerate mutase [Streptomyces griseus XylebKG-1]
gi|326659994|gb|EGE44840.1| Phosphoglycerate mutase [Streptomyces griseus XylebKG-1]
Length = 451
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLK---- 229
+E DG S+GNPG AG GAV+ A + E +G+ATNNVAEYR LI GL
Sbjct: 7 VVVEADGGSRGNPGPAGYGAVVIDPATGEPLAEAAEYIGVATNNVAEYRGLIAGLTAAKA 66
Query: 230 -YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ + V+ DSKLV Q+ G WKI + ++ L A + S I R
Sbjct: 67 LFPDAGDALRVHVRMDSKLVVEQMSGRWKIKHPDMKPLAARAAAVLPP-SSVTYEWIPRA 125
Query: 289 LNSEADAQANMGIYL-KDG-QVEAECSS 314
N AD AN + +DG Q EA S+
Sbjct: 126 QNKHADRLANEAMDAGRDGRQWEASAST 153
>gi|18997217|gb|AAL83334.1|AC074282_1 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|20042895|gb|AAM08723.1|AC116601_16 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 489
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L A G ++ + ATNN AEY L++GL+ A+
Sbjct: 128 TWTMAFDGAF--NSQGAGAGFILTAPTGDQFKHAIHLDFRATNNTAEYEGLLVGLRAAIA 185
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+ DS+LV Q+ +K +N L E ++L+ KF ++ H+ R + E
Sbjct: 186 LGVKRLIVKRDSELVTNQVHKDYKCSNPKLTKYLAEVRKLERKFDGLEVRHVYRKDSVEP 245
Query: 294 DAQAN 298
DA A
Sbjct: 246 DALAR 250
>gi|145479397|ref|XP_001425721.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392793|emb|CAK58323.1| unnamed protein product [Paramecium tetraurelia]
Length = 321
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 165 NTQSVPYNCYSC-TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRA 223
N + +P S TL FDGASK NPG AGAG L + + + + +G TNNVAE+ A
Sbjct: 176 NLEIIPIQTDSLYTLYFDGASKSNPGPAGAGIALFDKMKLIKEITQPLGKQTNNVAEFLA 235
Query: 224 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 283
L G++Y L G + GDSKLV + Q+L + + + F+ +
Sbjct: 236 LFFGIRYTLNLGINFLECFGDSKLVIDGMNSKINFKQQHLEDIRVAICDYAQLFKKVKYT 295
Query: 284 HILRNLNSEADAQA 297
HI R+ N AD A
Sbjct: 296 HISRDQNQIADKLA 309
>gi|158316831|ref|YP_001509339.1| bifunctional RNase H/acid phosphatase [Frankia sp. EAN1pec]
gi|158112236|gb|ABW14433.1| Phosphoglycerate mutase [Frankia sp. EAN1pec]
Length = 378
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYA-- 231
+E DG S+GNPG AG GA++R A G V R +G ATNNVAEY L+ GL+ A
Sbjct: 7 LVVEADGGSRGNPGPAGYGALVRDAGTGQVLAERAASIGTATNNVAEYEGLLAGLRAAAE 66
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
L G I V+ DSKLV Q+ G WKI + ++ L +A E+ + + R N
Sbjct: 67 LDPG-ADIEVRMDSKLVVEQMSGRWKIKHPSMRPLAAQAAEIAAGLGRVRFVWVPRARNG 125
Query: 292 EAD 294
+AD
Sbjct: 126 DAD 128
>gi|77554434|gb|ABA97230.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1807
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1265 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1320
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ + V+G S+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N A
Sbjct: 1321 LSIRRLIVRGYSQLVVNQVMKEWSCLDDNMTAYRQEVRKLENKFDGLELTHVLRHNNEAA 1380
Query: 294 DAQANMG 300
D AN G
Sbjct: 1381 DRLANFG 1387
>gi|113205385|gb|ABI34372.1| RNase H family protein [Solanum demissum]
Length = 1033
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
L FDGA+ N G GAVL +E G + + + TNN++EY A ILGL+ A G
Sbjct: 404 LFFDGAA--NKKGVGIGAVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMGI 461
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V GDS L+ QIQG W+ + L ++L +F S + HI R N ADA
Sbjct: 462 QELLVLGDSDLLVHQIQGEWETRDPKLIPYQHCLQDLCRRFVSIKFRHISRVHNEIADAL 521
Query: 297 ANMGIYLK 304
A + L+
Sbjct: 522 ATLSSMLQ 529
>gi|373252619|ref|ZP_09540737.1| ribonuclease HI [Nesterenkonia sp. F]
Length = 147
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQ-KG 235
+E DG S+GNPG AG+GA++R G V R +G A+NNVAEY LI GL A +
Sbjct: 3 VEADGGSRGNPGIAGSGALVRDPSGRVLATRATPLGKASNNVAEYTGLIDGLTLAREIDP 62
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSEA 293
+ V+ DSKLV Q+ W+I ++++ L +A + S Q+ + I R N +A
Sbjct: 63 EAEVDVRLDSKLVVEQMSKRWRIKHEDMKRLAAQAAAI---LPSAQVRYTWIPRKENGDA 119
Query: 294 DAQAN 298
DA +N
Sbjct: 120 DALSN 124
>gi|406575349|ref|ZP_11051055.1| phosphoglycerate mutase [Janibacter hoylei PVAS-1]
gi|404555267|gb|EKA60763.1| phosphoglycerate mutase [Janibacter hoylei PVAS-1]
Length = 373
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLR--AEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R A + L +G A+NNVAEYR +I GL A
Sbjct: 6 VEADGGSRGNPGIAGYGALVRDTATGERLVELAAPLGTASNNVAEYRGMIAGLTAARSIA 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ----SFQINHILRNLN 290
I V DSKLV Q+ G W+I + ++ L +A+++ + S + + R N
Sbjct: 66 ADAQIVVAMDSKLVVEQMAGRWRIKHPDMRELALQARDVVAEITAAGGSVEWVWVPRADN 125
Query: 291 SEADAQANMGI 301
+ADA +N G+
Sbjct: 126 DDADALSNRGM 136
>gi|373856555|ref|ZP_09599299.1| ribonuclease H [Bacillus sp. 1NLA3E]
gi|372453534|gb|EHP27001.1| ribonuclease H [Bacillus sp. 1NLA3E]
Length = 128
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +GAG ++ +G + + +GI +N+ AEYRA I GLK ++KGY+ +
Sbjct: 7 DGASAGNPGPSGAGIFIKG-NGVLEKYSIPLGIMSNHEAEYRAFIEGLKICIEKGYQIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N Q+ A L + A EL +F+ F + I N +AD A
Sbjct: 66 FRTDSELVNRSVEKEFAKNKQH-APLLETALELTREFELFFMKWIPSRQNKQADELARAA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|32480044|emb|CAE01788.1| OSJNBa0039K24.7 [Oryza sativa Japonica Group]
Length = 1818
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
++NVAEY AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L+
Sbjct: 1394 SHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLE 1453
Query: 275 EKFQSFQINHILRNLNSEADAQANMG 300
+KF +++H+LR+ N AD AN G
Sbjct: 1454 DKFDGLELSHVLRHNNEAADRLANFG 1479
>gi|145590536|ref|YP_001152538.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
gi|145282304|gb|ABP49886.1| ribonuclease H [Pyrobaculum arsenaticum DSM 13514]
Length = 199
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 176 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALIL 226
C DGA + NPG G G V+ AE +V EG+G+A TNNVAEY+A+I
Sbjct: 9 CVAYVDGACEPVNPGGVGGYGFVIYAEGRAVA---EGLGVACCCTALCTNNVAEYKAVIA 65
Query: 227 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 286
L+ A + G + ++++ DS+LV Q+ G+++++ +LA L +E K +F F +
Sbjct: 66 ALRRAAELGCRSVKIRSDSQLVVYQLTGVYRVHAPHLAELLEEVKRATSQFAEFSAEWVP 125
Query: 287 RNLNSEADAQANMGI--YLKDGQ 307
R N AD + + I +++D +
Sbjct: 126 RERNKRADRLSKLAICRHIRDDE 148
>gi|291287654|ref|YP_003504470.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
gi|290884814|gb|ADD68514.1| ribonuclease H [Denitrovibrio acetiphilus DSM 12809]
Length = 133
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA +GNPG AG G ++ A+ + + +G ATNN+AEY AL++ K + + +
Sbjct: 9 DGACRGNPGPAGCGYIIYADGQEIASGTKFIGTATNNLAEYNALLVAAKDPILNQFDKLN 68
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
DS+LV Q++G +K+ N+ L + + K L K +F NH+ R N EAD ANM
Sbjct: 69 FYLDSELVVKQMKGEYKLKNEGLIPVKLQIDKVLNGKQVTF--NHVPRAQNKEADKLANM 126
Query: 300 GI 301
I
Sbjct: 127 AI 128
>gi|50399972|gb|AAT76360.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 191 AGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 247
GAG VL + + RL + I A++NVAEY AL+ GL+ A+ G + + V+GDS+L
Sbjct: 948 TGAGVVLISP--TRERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQL 1005
Query: 248 VCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V Q+ W + N+ +E ++L+++F ++ H+LR+ N AD AN G
Sbjct: 1006 VVNQVMKEWSCLDDNMTAYRQEVRKLEDRFDGLELTHVLRHNNEAADRLANFG 1058
>gi|355572032|ref|ZP_09043240.1| ribonuclease H [Methanolinea tarda NOBI-1]
gi|354825128|gb|EHF09363.1| ribonuclease H [Methanolinea tarda NOBI-1]
Length = 141
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKY 230
CY+ DGAS+GNPG A AG VL DG V + +G TNN AEY A+I L
Sbjct: 6 TCYT-----DGASRGNPGPAAAGFVLLDSDGRVLEKKAVFLGKKTNNEAEYHAVIKALAA 60
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ 281
A + G +R+ DS+LV Q++G +++N L LC + ++K+ S +
Sbjct: 61 AKKHGAHRVRICSDSQLVIRQLRGEYRVNKPGLRELCARVRLCEQKYSSVE 111
>gi|395769907|ref|ZP_10450422.1| bifunctional RNase H/acid phosphatase [Streptomyces acidiscabies
84-104]
Length = 442
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLK--YA 231
+E DG S+GNPG AG GAV+ A+ G + R G +G+ATNNVAEY L+ G + +A
Sbjct: 23 LVIEADGGSRGNPGPAGYGAVVADADTGELLAERSGFLGVATNNVAEYNGLLAGARAAHA 82
Query: 232 LQKGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRN 288
L H+R+ DSKLV Q+ G W+I + L L EA L ++++ I R
Sbjct: 83 LNPSAAVHVRM--DSKLVVEQMSGRWQIKHPALRPLAIEAARL---LPGDRVSYEWIPRA 137
Query: 289 LNSEADAQAN 298
N AD AN
Sbjct: 138 QNKRADRLAN 147
>gi|78708515|gb|ABB47490.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1783
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1456 TWTMAFDGAL--NSQGAGAGLILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1513
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1514 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 1573
Query: 294 D 294
D
Sbjct: 1574 D 1574
>gi|219116282|ref|XP_002178936.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409703|gb|EEC49634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 376
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 151/332 (45%), Gaps = 53/332 (15%)
Query: 8 FYVVRKGDVVGIYKTLSDCQLQA-GFSVRDPSLTVYKGYGLSKEAEEYLASHGLKSSSYS 66
+Y V G GI + +CQ Q GFS +K + ++AE+YL +HG S+S
Sbjct: 5 YYAVAAGRRTGILDSWVECQAQTNGFSG-----AKFKSFHDKQQAEDYLRAHGQTSAS-P 58
Query: 67 VSASDVKSDLFGKIVPCPLQEPASSGEKVSDEVSLPKMLREVAAAGSTSISINTQKRHFN 126
S +DV+ + P + P +S VS E ++ + AA + + I T F
Sbjct: 59 PSNADVRIITAFRSGP---RSPVASPATVSCEKAIEHIRSAHAARPNPDVRIVTA---FT 112
Query: 127 EDNCWNTQSVPENYVAAA-----GSTSFSINTQRSHL-NADSCLNTQSV-PYNCYSCTLE 179
C + PE +V+AA T +S+ ++ + NA + +S+ P +
Sbjct: 113 SRPC--KRDSPE-FVSAARPRKYAKTGYSVGSELDNSENAKAETRHRSLCPVGSRRLKIH 169
Query: 180 --FDGASKGNPGQAGAGAV-------LRAEDGSVYRL----REGVGI-ATNNVAEYRALI 225
FDG S+GNPG AGAG R DG RL R VG ATNN AEY +
Sbjct: 170 INFDGGSRGNPGVAGAGVAVVLTDLDWRIGDGLCERLNVHLRFFVGTGATNNEAEYSGAL 229
Query: 226 LGLKYALQKGYK---------HIR--VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
L A ++ + H++ VQGDSKL+ Q++G + + L ++A +L
Sbjct: 230 WALTVAREETRRFESFYDCEAHVQLVVQGDSKLIIQQLKGNYTCKSPKLKPYYEKAIQLL 289
Query: 275 EKFQSF-----QINHILRNLNSEADAQANMGI 301
+ FQSF + H+ R N +AD AN +
Sbjct: 290 DDFQSFAQFRLSLEHVYRESNKQADGLANEAM 321
>gi|406881392|gb|EKD29468.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 133
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DG ++ NPG AG G + DG V R + +GIATNN AEY+ + G++ ++ G + I
Sbjct: 8 DGWARNNPGPAGIGVYITDRDGRPVERRHKYLGIATNNQAEYQWALHGIRRGIELGAREI 67
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEA-KELKEKFQSFQINHILRNLNSEADAQAN 298
+ DS+LV Q+ GL+KI N+ LA + E K + + + HI R N EAD +N
Sbjct: 68 DLYMDSQLVINQLAGLFKIKNKELAEIKFEIEKMITAWWGKIEFIHIPREHNKEADRLSN 127
Query: 299 MGI 301
+ +
Sbjct: 128 VAM 130
>gi|403251524|ref|ZP_10917859.1| ribonuclease HI [actinobacterium SCGC AAA027-L06]
gi|402915143|gb|EJX36131.1| ribonuclease HI [actinobacterium SCGC AAA027-L06]
Length = 134
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-KGYKHI 239
DG S+GNPG A G V+ D V + +G A+NNVAEY LI GLK + +
Sbjct: 10 DGGSRGNPGPAAYGTVIFENDKVVKEIGASIGEASNNVAEYSGLIAGLKAVNEIDPAATV 69
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE-KFQSFQINHILRNLNSEADAQAN 298
V+ DSKLV Q+ G WK+ + N+ L K+A + K S+Q I R NS AD+ N
Sbjct: 70 LVKMDSKLVVEQMSGRWKVKHPNMKELAKQAFAAHDPKLVSYQ--WIPREENSHADSILN 127
>gi|294868378|ref|XP_002765508.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239865551|gb|EEQ98225.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 368
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 16/148 (10%)
Query: 167 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDG-------SVYRLREGVGIATNNVA 219
QS P N + L FDG S+G AG+GAVL +DG + + L+ G G TNN A
Sbjct: 210 QSTPSNLPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPG-RTNNEA 268
Query: 220 EYRALILGLKY--ALQKGYKHIRVQGDSKLVCMQI-QGLWKINNQNLAGLCKEAKE---- 272
EY AL +GL L + ++ +QGDSKLV Q+ WK+N + L L + A++
Sbjct: 269 EYEALCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKERAEQAIHG 328
Query: 273 LKEKFQSFQINHILRNLNSEADAQANMG 300
L ++ Q I H LR N AD A G
Sbjct: 329 LMDRMQVTWI-HTLRCNNKRADELATFG 355
>gi|289706127|ref|ZP_06502498.1| ribonuclease HI [Micrococcus luteus SK58]
gi|289557160|gb|EFD50480.1| ribonuclease HI [Micrococcus luteus SK58]
Length = 329
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GA++R G + R +G A+NNVAEY L+ GL+ A
Sbjct: 8 VEADGGSRGNPGVAGYGALVRDPATGEILRTDAAPLGKASNNVAEYSGLVAGLRMARDLD 67
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V DSKLV Q+ G WKI ++++ L EA+ + + I RN N +AD
Sbjct: 68 PEARVHVLMDSKLVVEQMSGRWKIKHEDMRRLAAEARSVLPP-ERVTYEWIPRNRNKDAD 126
Query: 295 AQAN 298
+N
Sbjct: 127 RLSN 130
>gi|14018058|gb|AAK52121.1|AC079936_17 Putative retroelement [Oryza sativa Japonica Group]
Length = 2079
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 175 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYA 231
+ T+ FDGA S+G AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1521 TWTMAFDGALNSQG----AGAGLILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAA 1576
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 1577 AALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNV 1636
Query: 292 EAD 294
E D
Sbjct: 1637 EPD 1639
>gi|269956870|ref|YP_003326659.1| phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
gi|269305551|gb|ACZ31101.1| Phosphoglycerate mutase [Xylanimonas cellulosilytica DSM 15894]
Length = 412
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYAL- 232
+E DG S+GNPG AG GA++R GSV R G +G+ATNNVAEY L+ GL+ A
Sbjct: 9 LVVEADGGSRGNPGPAGYGALVRDVATGSVLAERAGYLGVATNNVAEYTGLLEGLRAAAG 68
Query: 233 --QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 278
H+R+ DS+LV Q+ G W+I + L + +A+ + Q
Sbjct: 69 IDPAARVHVRL--DSRLVVEQMSGRWQIKHDALRAIAAQARAVLPAAQ 114
>gi|108864359|gb|ABA93438.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1129
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY+AL++G++ A
Sbjct: 626 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYQALLVGIRVAAA 683
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 684 LGVRQLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 743
Query: 294 D 294
D
Sbjct: 744 D 744
>gi|297199289|ref|ZP_06916686.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
gi|297147350|gb|EFH28596.1| bifunctional RNase H/acid phosphatase [Streptomyces sviceus ATCC
29083]
Length = 441
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 12/128 (9%)
Query: 178 LEFDGASKGNPGQAGAG-AVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYA--LQ 233
+E DG S+GNPG AG G VL A G ++ E +G+ TNNVAEYR L+ GL+ A L
Sbjct: 53 VEADGGSRGNPGPAGYGCVVLDAATGETLVETYEYLGVVTNNVAEYRGLLAGLRAAHDLD 112
Query: 234 KGYK-HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLN 290
+ H+R+ DSKLV Q+ G WKI + ++ L A + F ++ + I R N
Sbjct: 113 PSARVHVRM--DSKLVVEQMSGRWKIKHPDMKPLALAAGRV---FPPGRVTYEWIPREQN 167
Query: 291 SEADAQAN 298
AD AN
Sbjct: 168 KHADRLAN 175
>gi|50878385|gb|AAT85160.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1316
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FD SK G AG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 890 TMHFD-ESKRLSGTV-AGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 945
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ W + N+ +E +L++KF ++ H+LR+ N A
Sbjct: 946 VGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVCKLEDKFNGLELTHVLRHNNEAA 1005
Query: 294 DAQANMG 300
D AN G
Sbjct: 1006 DRLANFG 1012
>gi|49328062|gb|AAT58762.1| putative polyprotein [Oryza sativa Japonica Group]
gi|49328085|gb|AAT58784.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1178
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1011 TWTMAFDGAL--NSQGAGAGFILMSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1068
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1069 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1128
Query: 294 D 294
D
Sbjct: 1129 D 1129
>gi|77556325|gb|ABA99121.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1681
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1205 TWTMAFDGAL--NSQGAGAGFILTSPFGDQFKHAIHLNFRATNNTAEYEGLLAGIRAATA 1262
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ HI R N E
Sbjct: 1263 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHIYRKDNVEP 1322
Query: 294 D 294
D
Sbjct: 1323 D 1323
>gi|19881765|gb|AAM01166.1|AC113336_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31430472|gb|AAP52381.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 627
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 172 NCYSCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGL 228
N + T+ FDGA S+G AGAG +L + G ++ + ATNN AEY L++G+
Sbjct: 219 NNETWTMAFDGALSSQG----AGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLVGI 274
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R
Sbjct: 275 RAAAALGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDRIEVRHVYRK 334
Query: 289 LNSEADAQA 297
N E D A
Sbjct: 335 DNVEPDDPA 343
>gi|172055036|ref|YP_001806363.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|354555210|ref|ZP_08974512.1| ribonuclease H [Cyanothece sp. ATCC 51472]
gi|171701317|gb|ACB54297.1| hypothetical protein cce_4951 [Cyanothece sp. ATCC 51142]
gi|353552801|gb|EHC22195.1| ribonuclease H [Cyanothece sp. ATCC 51472]
Length = 256
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 178 LEFDGAS-KGNPGQAGAGAVLRAE-DGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
L FDG + NPG G GAV+ E D + G I TNN AEY LILGL+ AL+
Sbjct: 10 LYFDGGTFPLNPGHGGCGAVIIQENDEQSFSKYLGENI-TNNQAEYGGLILGLEKALEMN 68
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ V+GDS+LV Q+ G ++ N L L ++A L ++F+ + I R +N +ADA
Sbjct: 69 ISSLEVKGDSELVICQVIGSYRCRNSGLRPLHRQAISLAKQFEHIHFDWIPREINKKADA 128
Query: 296 QANMGI 301
A I
Sbjct: 129 AATEAI 134
>gi|116309132|emb|CAH66235.1| H0825G02.12 [Oryza sativa Indica Group]
Length = 1245
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 163 CLNTQSVPYNCY-----SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATN 216
CL T S P Y + T+ FDGA N AGAG +L + G ++ + ATN
Sbjct: 651 CLPT-SWPIGPYQGENETWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATN 707
Query: 217 NVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK 276
N AEY L+ G++ A G K + ++GDS+LV Q+ +K +N L+ E ++L+ +
Sbjct: 708 NTAEYEGLLAGIRAAAALGAKRLIIKGDSELVANQVHKDYKCSNPELSKYLSEVRKLERR 767
Query: 277 FQSFQINHILRNLNSEAD 294
F ++ H+ R N E D
Sbjct: 768 FDGIEVRHVYRKDNVEPD 785
>gi|433639224|ref|YP_007284984.1| ribonuclease HI [Halovivax ruber XH-70]
gi|433291028|gb|AGB16851.1| ribonuclease HI [Halovivax ruber XH-70]
Length = 197
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 64/121 (52%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
L +DG S+GNPG AG G VL DG V + +G ATNN AEY ALI L+ A + G+
Sbjct: 71 LYWDGGSRGNPGPAGIGWVLVTGDGIVAEGSDTIGEATNNQAEYEALIAALEAAREYGFD 130
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ +GDS+L+ Q+ G + N+ L E F + I H+ R N AD A
Sbjct: 131 EVHCRGDSELIVKQVTGAYDTNDPVLREKRVTVVEHLSSFDEWTIEHVPREANEHADDLA 190
Query: 298 N 298
N
Sbjct: 191 N 191
>gi|48475198|gb|AAT44267.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1315
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 193 AGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 249
AG VL + G RL + I A++NVAEY AL+ GL+ A+ G + + V GDS+LV
Sbjct: 1183 AGVVLISPTGE--RLSYILWIHFSASHNVAEYEALLHGLRIAISLGIRRLIVCGDSQLVV 1240
Query: 250 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
Q+ W + N+ +E ++L++KF ++ H+LR+ N AD AN G
Sbjct: 1241 NQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRLANFG 1291
>gi|406914218|gb|EKD53436.1| Ribonuclease H [uncultured bacterium]
Length = 143
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 12/140 (8%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGL 228
+P + DG S+GNPGQA G + + V+ L E +G TNNVAEY A++ L
Sbjct: 1 MPKTIDLLEINTDGGSRGNPGQAAIGVIAKEGTHKVFSLSERIGETTNNVAEYTAVLRAL 60
Query: 229 KYALQKGY--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCK----EAKELKE----KFQ 278
+ + + IR DS+L+ QI GL+K+ +L L K + K+L++ K
Sbjct: 61 EKIEEDNVFTEKIRFVLDSELIVKQITGLYKVKQPHLQVLRKKIIDQTKKLRDSGQIKLM 120
Query: 279 SFQINHILRNLNSEADAQAN 298
SF ++LR N EAD N
Sbjct: 121 SFV--NVLREKNKEADKLVN 138
>gi|33113963|gb|AAP94585.1| putative gag-pol precursor [Zea mays]
Length = 1833
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 167 QSVPYNCYSC---TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAE 220
Q VP N + + FDG+ K AGAG + A G L+ + + A+NN AE
Sbjct: 1287 QQVPDNPETTEVWRMYFDGSLKLQ--GAGAGILFTAPGGE--HLKYALQLLFPASNNAAE 1342
Query: 221 YRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF 280
Y ALI GL A+ G K + V GDS +V QI W ++ ++ C ++L++KF+
Sbjct: 1343 YEALIHGLNIAISLGVKRLMVYGDSLVVISQINKEWDCSSDSMGKYCTAVRKLEDKFEGL 1402
Query: 281 QINHILRNLNSEADAQANMG 300
+ +HI R+ N+ AD + +G
Sbjct: 1403 EFHHIERDRNTAADILSKLG 1422
>gi|22857591|gb|AAN09865.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1469
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1213 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAV 1270
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1271 LGAKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 1330
Query: 294 D 294
D
Sbjct: 1331 D 1331
>gi|108862571|gb|ABA97641.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 409
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA N AGAG +L + G ++ + ATNN AEY+ L+ G++ A+ G
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYKGLLAGIRAAVALGV 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K + ++GDS+LV Q+ +K +N L+ E ++L+++F ++ HI R N E D
Sbjct: 59 KRLIIKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHIYRKDNIEPDDL 118
Query: 297 A 297
A
Sbjct: 119 A 119
>gi|110288766|gb|AAP52584.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1486
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1230 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAV 1287
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1288 LGAKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 1347
Query: 294 D 294
D
Sbjct: 1348 D 1348
>gi|108709472|gb|ABF97267.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 663
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A++NVAEY AL+ GL+ A+ G + + V+GDS+LV Q+ W + N+ +E ++L
Sbjct: 191 ASHNVAEYEALLHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKL 250
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+++F ++ H+LR+ N AD AN G
Sbjct: 251 EDRFDGLELTHVLRHNNEAADRLANFG 277
>gi|356551150|ref|XP_003543941.1| PREDICTED: uncharacterized protein LOC100803865 [Glycine max]
Length = 1207
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1067 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSD 1124
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K +RV GDS LV Q++G W+ + L KEL E F +H+ R N ADA
Sbjct: 1125 VKLLRVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPREENQMADA 1184
Query: 296 QANMG 300
A +
Sbjct: 1185 LATLA 1189
>gi|57863855|gb|AAW56896.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1295
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ + FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 873 TWIMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 930
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDSKLV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 931 LGVKRLVVKGDSKLVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 990
Query: 294 D 294
D
Sbjct: 991 D 991
>gi|398332684|ref|ZP_10517389.1| ribonuclease HI [Leptospira alexanderi serovar Manhao 3 str. L 60]
Length = 108
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%)
Query: 201 DGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINN 260
D +R+ E +G TNNVAE+ +L GL+ +++ + I V DS+LV Q+ G +K+ +
Sbjct: 6 DKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHVYMDSELVVRQVSGKYKVKH 65
Query: 261 QNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
NL KE +L Q+FQI H+ R NS AD AN
Sbjct: 66 PNLLEYKKEVDKLVSSLQNFQITHVPREKNSVADKLAN 103
>gi|34015095|gb|AAQ56293.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1311
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A++NVAEY AL+ GL+ A+ G + V+GDS+L+ Q+ W + N+ +E ++L
Sbjct: 774 ASHNVAEYEALLHGLRIAISLGIHRLIVRGDSQLIVNQVMKEWSCLDDNMTAYRQEVRKL 833
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
++KF ++ H+LR+ N AD AN G
Sbjct: 834 EDKFDGLELTHVLRHNNEAADRLANFG 860
>gi|22165089|gb|AAM93706.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432507|gb|AAP54129.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 816
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 175 SCTLEFDGA--SKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYA 231
+ T+ FDGA S+G AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 389 TWTMAFDGALHSQG----AGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAA 444
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 445 AALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNI 504
Query: 292 EADAQA 297
E D A
Sbjct: 505 EPDDLA 510
>gi|108864539|gb|ABA94416.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1714
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L++G++ A
Sbjct: 1294 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLVGIRAAAA 1351
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R + E
Sbjct: 1352 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDSIEP 1411
Query: 294 D 294
D
Sbjct: 1412 D 1412
>gi|38346005|emb|CAE01888.2| OSJNBa0035O13.7 [Oryza sativa Japonica Group]
Length = 1421
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 843 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 900
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + ++GDS+LV Q+ +K +N L+ E ++L+ +F ++ H+ R N E
Sbjct: 901 LGAKRLIIKGDSELVANQVHKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDNVEP 960
Query: 294 D 294
D
Sbjct: 961 D 961
>gi|284030531|ref|YP_003380462.1| phosphoglycerate mutase [Kribbella flavida DSM 17836]
gi|283809824|gb|ADB31663.1| Phosphoglycerate mutase [Kribbella flavida DSM 17836]
Length = 374
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGV--GIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG A GA++R + GV GIATNNVAEY LI GL+ A +
Sbjct: 6 VIVEADGGSRGNPGPAAYGALVRDPQTGEVIAQAGVTIGIATNNVAEYSGLIAGLELAAE 65
Query: 234 KGY-KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
I V+ DSKLV Q+ G WK+ + ++ L +A+ L
Sbjct: 66 YAPDASIEVRMDSKLVVEQMAGRWKVKHPDMKPLAMKAQSL 106
>gi|327310689|ref|YP_004337586.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
gi|326947168|gb|AEA12274.1| ribonuclease H [Thermoproteus uzoniensis 768-20]
Length = 193
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 176 CTLEFDGASKG-NPGQAGA-GAVLRAEDGSVYRLREGVGIA------TNNVAEYRALILG 227
C + FDGA + NPG G G V+ E G RL G G+A TNNVAEY AL
Sbjct: 3 CAVYFDGACEPVNPGGLGTYGYVIYDEGGR--RLDRGYGVACHGDGCTNNVAEYVALREA 60
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A + G + ++GDS+LV QI+G W +N+ L L E + L F + + + R
Sbjct: 61 LRRAKELGCDEVEIRGDSQLVVRQIKGEWAVNSLKLMELKDEVEALLAGFARWSVEWVPR 120
Query: 288 NLNSEADAQANM 299
N EAD + +
Sbjct: 121 EANKEADGLSQI 132
>gi|10281201|gb|AAG15480.1| polyprotein [Oryza sativa Indica Group]
Length = 567
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 454 NIEHWTMHFDGSKRLS--GIGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 509
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 286
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+L
Sbjct: 510 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL 567
>gi|356510495|ref|XP_003523973.1| PREDICTED: uncharacterized protein LOC100812732 [Glycine max]
Length = 1456
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 992 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1049
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL E F +HI R N ADA
Sbjct: 1050 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHIPREENQMADA 1109
Query: 296 QANMG 300
A +
Sbjct: 1110 LATLA 1114
>gi|77549344|gb|ABA92141.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1929
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ DG+ + +AG + + Y L A++NVAEY AL+ GL+ A+ G
Sbjct: 1387 TMHSDGSKRLTGTRAGVVLISPTRERLSYVLWIHFS-ASHNVAEYEALLHGLRIAISLGI 1445
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V+GDS+LV Q+ W + N+ +E ++L+ KF ++ H+LR+ N +D
Sbjct: 1446 RRLIVRGDSQLVVNQVMKEWSCLDDNMTTYRQEVRKLENKFDGLELTHVLRHNNEASDKL 1505
Query: 297 ANMG 300
AN G
Sbjct: 1506 ANFG 1509
>gi|108862465|gb|ABA97388.2| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 567
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 454 NMEHWTMHFDGSKRLS--GIGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 509
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 286
+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+ +++H+L
Sbjct: 510 RIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL 567
>gi|291451062|ref|ZP_06590452.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354011|gb|EFE80913.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 412
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVL-RAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+ A G G +G ATNN AEYR LI GL+ A
Sbjct: 49 VEADGGSRGNPGPAGYGAVVVDAATGETLTETAGFLGTATNNTAEYRGLIAGLRAARDLD 108
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V+ DSKLV Q+ G W+I + L L EA + Q + I R N +AD
Sbjct: 109 PEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAAEAAGILAPDQVTYV-WIPRAENQQAD 167
Query: 295 AQAN 298
AN
Sbjct: 168 RLAN 171
>gi|356565922|ref|XP_003551185.1| PREDICTED: uncharacterized protein LOC100779154 [Glycine max]
Length = 1946
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1373 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSD 1430
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL E F +H+ R+ N ADA
Sbjct: 1431 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPRDENQMADA 1490
Query: 296 QANMG 300
A +
Sbjct: 1491 LATLA 1495
>gi|117928110|ref|YP_872661.1| phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
gi|117648573|gb|ABK52675.1| Phosphoglycerate mutase [Acidothermus cellulolyticus 11B]
Length = 411
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQ-K 234
+E DG ++GNPG AG GAV+R A V R G + IATNNVAEY LI GL+ A +
Sbjct: 11 VEADGGARGNPGPAGYGAVVRDATTREVLAERSGYLRIATNNVAEYHGLIAGLEAAAEID 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH--ILRNLNSE 292
+ V+ DS+LV Q+ G W+I + +L L A +L F S ++ + R N+
Sbjct: 71 PSAFVDVRLDSQLVVKQMTGEWQIKHPHLQPLADRAAQLAAAFGSGRVTFTWVRREANAH 130
Query: 293 ADAQANMGI 301
AD N I
Sbjct: 131 ADRLVNAAI 139
>gi|242037781|ref|XP_002466285.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
gi|241920139|gb|EER93283.1| hypothetical protein SORBIDRAFT_01g005015 [Sorghum bicolor]
Length = 1005
Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAGA L +R + I A+NNVAEY AL+ GLK A++
Sbjct: 448 TMYFDGSLM----KTGAGAGLLFISPLGVHMRYIIRIHFAASNNVAEYEALVNGLKIAIE 503
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ ++ + CKE + L++KF ++ H+ R N A
Sbjct: 504 LGVRRLDVRGDSQLVIDQVMKASSCHDPKMEAYCKEVRRLEDKFHGLELVHVARRYNEAA 563
Query: 294 DAQANMG 300
D A +
Sbjct: 564 DELAKIA 570
>gi|108708807|gb|ABF96602.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1727
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1258 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1315
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N E
Sbjct: 1316 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRKDNVEP 1375
Query: 294 D 294
D
Sbjct: 1376 D 1376
>gi|41469127|gb|AAS07078.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1724
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1255 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1312
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N E
Sbjct: 1313 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRKDNVEP 1372
Query: 294 D 294
D
Sbjct: 1373 D 1373
>gi|294498230|ref|YP_003561930.1| RNase H [Bacillus megaterium QM B1551]
gi|294348167|gb|ADE68496.1| RNase H [Bacillus megaterium QM B1551]
Length = 132
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA+ GNPG +GAG +++ +G +R +GI TN+ AEY AL+ LK L+K Y +
Sbjct: 6 IDGATAGNPGPSGAGILIKG-NGEHHRYAIALGIMTNHEAEYHALLHALKICLEKKYTSV 64
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV + + + N+ A L +EA +L +F+ F I + + N+ AD A
Sbjct: 65 SFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFELFFIKWVPSSQNAGADQLARQ 123
Query: 300 GIYLKD 305
I K+
Sbjct: 124 AINQKE 129
>gi|229149897|ref|ZP_04278125.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
gi|228633578|gb|EEK90179.1| hypothetical protein bcere0011_14550 [Bacillus cereus m1550]
Length = 128
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKAYA-KNTIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|108707203|gb|ABF94998.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 977
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 391 TMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAATLG 448
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V+GDS+LV Q+ +K +N L+ E ++L++KF ++ H R N E D
Sbjct: 449 AKRLIVKGDSELVANQVHKDYKCSNPKLSKYLAEVRKLEKKFDGIEVRHAYRKDNVEPDD 508
Query: 296 QA 297
A
Sbjct: 509 LA 510
>gi|116311078|emb|CAH68008.1| OSIGBa0157K09-H0214G12.19 [Oryza sativa Indica Group]
Length = 1346
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 140 YVAAAG-STSFSINTQRSHLNADSCLNTQSVPYN-------CYSCTLEFDGASKGNPGQA 191
Y+AA S S I +R + AD + ++P N + T+ FDGA N A
Sbjct: 741 YIAATPYSVSTVIVVEREKVLADFVAD-WTMPDNKPDNQGDNETWTMAFDGAL--NSQGA 797
Query: 192 GAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCM 250
GAG +L + G ++ + ATNN AEY L+ G++ A G K + V+G+SKLV
Sbjct: 798 GAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGAKRLIVKGNSKLVAN 857
Query: 251 QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
Q+ +K +N L+ E ++L+ +F ++ H+ R N E D
Sbjct: 858 QVYKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDNVEPD 901
>gi|406907804|gb|EKD48516.1| ribonuclease H [uncultured bacterium]
Length = 157
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
++ T+ DGAS+ NPG++GAG + + +V +GI TNN AEY AL+L L + Q
Sbjct: 6 HTWTVFVDGASRKNPGKSGAGIFIEKDGETVCSEGFYLGIKTNNQAEYLALLLALHFIDQ 65
Query: 234 KGYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ IR+ DS+L+ Q++G+++I N+ L L AK K+ ++ H+LR N
Sbjct: 66 YASQSDIIRIASDSELMVKQLKGIYRIKNEGLQPLYHLAKIYFAKY-PIEVLHVLRENNK 124
Query: 292 EADAQANMGI 301
+ADA AN G+
Sbjct: 125 KADALANKGV 134
>gi|30019744|ref|NP_831375.1| ribonuclease H [Bacillus cereus ATCC 14579]
gi|206970760|ref|ZP_03231712.1| RNase H [Bacillus cereus AH1134]
gi|218233881|ref|YP_002366379.1| ribonuclease H [Bacillus cereus B4264]
gi|228952076|ref|ZP_04114171.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957973|ref|ZP_04119710.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229043450|ref|ZP_04191160.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|229069249|ref|ZP_04202539.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|229078879|ref|ZP_04211431.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|229109152|ref|ZP_04238751.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|229127023|ref|ZP_04256022.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|229144309|ref|ZP_04272715.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|296502279|ref|YP_003663979.1| ribonuclease H [Bacillus thuringiensis BMB171]
gi|365162397|ref|ZP_09358526.1| hypothetical protein HMPREF1014_03989 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423435181|ref|ZP_17412162.1| hypothetical protein IE9_01362 [Bacillus cereus BAG4X12-1]
gi|423504709|ref|ZP_17481300.1| hypothetical protein IG1_02274 [Bacillus cereus HD73]
gi|423587923|ref|ZP_17564010.1| hypothetical protein IIE_03335 [Bacillus cereus VD045]
gi|423629444|ref|ZP_17605192.1| hypothetical protein IK5_02295 [Bacillus cereus VD154]
gi|423643261|ref|ZP_17618879.1| hypothetical protein IK9_03206 [Bacillus cereus VD166]
gi|423647622|ref|ZP_17623192.1| hypothetical protein IKA_01409 [Bacillus cereus VD169]
gi|449088488|ref|YP_007420929.1| ribonuclease H [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|29895289|gb|AAP08576.1| Ribonuclease HI [Bacillus cereus ATCC 14579]
gi|206734396|gb|EDZ51566.1| RNase H [Bacillus cereus AH1134]
gi|218161838|gb|ACK61830.1| ribonuclease H [Bacillus cereus B4264]
gi|228639096|gb|EEK95520.1| hypothetical protein bcere0012_14700 [Bacillus cereus BDRD-ST24]
gi|228656376|gb|EEL12215.1| hypothetical protein bcere0015_14780 [Bacillus cereus BDRD-Cer4]
gi|228674162|gb|EEL29407.1| hypothetical protein bcere0018_14230 [Bacillus cereus Rock1-15]
gi|228704293|gb|EEL56727.1| hypothetical protein bcere0023_15410 [Bacillus cereus Rock4-2]
gi|228713736|gb|EEL65621.1| hypothetical protein bcere0025_14540 [Bacillus cereus F65185]
gi|228725828|gb|EEL77075.1| hypothetical protein bcere0027_14980 [Bacillus cereus AH676]
gi|228801680|gb|EEM48560.1| hypothetical protein bthur0005_14840 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807608|gb|EEM54132.1| hypothetical protein bthur0006_14870 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|296323331|gb|ADH06259.1| ribonuclease H [Bacillus thuringiensis BMB171]
gi|363618282|gb|EHL69632.1| hypothetical protein HMPREF1014_03989 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401125419|gb|EJQ33179.1| hypothetical protein IE9_01362 [Bacillus cereus BAG4X12-1]
gi|401227660|gb|EJR34189.1| hypothetical protein IIE_03335 [Bacillus cereus VD045]
gi|401267311|gb|EJR73371.1| hypothetical protein IK5_02295 [Bacillus cereus VD154]
gi|401275265|gb|EJR81232.1| hypothetical protein IK9_03206 [Bacillus cereus VD166]
gi|401285576|gb|EJR91415.1| hypothetical protein IKA_01409 [Bacillus cereus VD169]
gi|402455231|gb|EJV87014.1| hypothetical protein IG1_02274 [Bacillus cereus HD73]
gi|449022245|gb|AGE77408.1| ribonuclease H [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 128
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|77555122|gb|ABA97918.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 540
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + + RL + I A++NVAEY AL+ GL+ +
Sbjct: 281 TMHFDGSKRLS--GIGAGVVLISP--TRERLSYVLWIHFSASHNVAEYEALLHGLRITIS 336
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V G+S+LV + W + N+ +E ++L++KF ++ H+L++ N A
Sbjct: 337 LGIRRLIVHGNSQLVVNHVMKEWSCLDDNMTAYLQEVRKLEDKFDGLELPHVLQHNNEAA 396
Query: 294 DAQANMG 300
D AN G
Sbjct: 397 DRLANFG 403
>gi|395010737|ref|ZP_10394086.1| ribonuclease HI [Acidovorax sp. CF316]
gi|394311185|gb|EJE48565.1| ribonuclease HI [Acidovorax sp. CF316]
Length = 159
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHI 239
DG++ NPG+ G GAVL A DG+ + L + NN AE RAL++ L AL +G +
Sbjct: 12 DGSAIPNPGRMGLGAVLVAPDGTRHALSQATHATGCNNEAELRALVMALNEALARGASAL 71
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+V DS ++ Q+ + + L L A+ L + F QI I R+ N EADA A
Sbjct: 72 QVYSDSSILVEQLGEVAAPPIERLEPLYAAARALLKSFDQVQIQWIARHRNGEADALARA 131
Query: 300 GI 301
+
Sbjct: 132 AL 133
>gi|32488455|emb|CAE03388.1| OSJNBa0004N05.12 [Oryza sativa Japonica Group]
Length = 1346
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 783 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 840
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+G+SKLV Q+ +K +N L+ E ++L+ +F ++ H+ R N E
Sbjct: 841 LGAKRLIVKGNSKLVANQVYKDYKCSNPELSKYLSEVRKLERRFDGIEVRHVYRKDNVEP 900
Query: 294 D 294
D
Sbjct: 901 D 901
>gi|392400991|ref|YP_006437591.1| bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
gi|390532069|gb|AFM07798.1| Bifunctional RNase H/acid phosphatase [Corynebacterium
pseudotuberculosis Cp162]
Length = 363
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%)
Query: 204 VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNL 263
+ RL VG ATNNVAEY AL+ GL A + G + V DSKLV Q+ G WKI + ++
Sbjct: 11 LRRLAYAVGTATNNVAEYHALLNGLTAARELGATEVDVLMDSKLVVEQMSGRWKIKHPDM 70
Query: 264 AGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGI 301
L + + F S I RN N+ AD AN +
Sbjct: 71 KQLALSCQHIASGFASITYTWIPRNQNARADELANKAM 108
>gi|77554589|gb|ABA97385.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 607
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++N+AEY AL+ L+ A+
Sbjct: 371 TMHFDGSKRLT--GTGAGVVLISPTGE--RLSYVLWIHFSASHNMAEYEALLHRLRIAIS 426
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + ++GDS+LV Q+ W N N+ +E ++L++KF ++ H+L + N A
Sbjct: 427 LGIRRLIIRGDSQLVINQVMKEWSCLNDNMTAYRQEVRKLEDKFDGLELTHVLGHNNEAA 486
Query: 294 DAQANMG 300
+ +N G
Sbjct: 487 NRLSNFG 493
>gi|423423766|ref|ZP_17400797.1| hypothetical protein IE5_01455 [Bacillus cereus BAG3X2-2]
gi|401114594|gb|EJQ22452.1| hypothetical protein IE5_01455 [Bacillus cereus BAG3X2-2]
Length = 128
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFNLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|359145028|ref|ZP_09178858.1| bifunctional RNase H/acid phosphatase [Streptomyces sp. S4]
Length = 369
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ-K 234
+E DG S+GNPG AG GAV+ A ++ +G ATNN AEYR LI GL+ A
Sbjct: 6 VEADGGSRGNPGPAGYGAVVVDAATGETLTETAAFLGTATNNTAEYRGLIAGLRAARDLD 65
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ V+ DSKLV Q+ G W+I + L L EA + Q + I R N AD
Sbjct: 66 PEARVEVRMDSKLVVEQMAGRWRIKHPGLQELAAEAAGILAPDQVTYV-WIPRAENQHAD 124
Query: 295 AQAN 298
AN
Sbjct: 125 RLAN 128
>gi|147845162|emb|CAN81618.1| hypothetical protein VITISV_001999 [Vitis vinifera]
Length = 674
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYAL 232
+ FDGA+ N G G +L + G SV +ATNN+ EY A ILGL+ AL
Sbjct: 97 MYFDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETAL 154
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + + V GDS LV QIQG WK + L + L +F+ + H+ R N
Sbjct: 155 ELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYTHLPRAQNQF 214
Query: 293 ADAQANMG 300
ADA A +
Sbjct: 215 ADALATLA 222
>gi|75759688|ref|ZP_00739771.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896627|ref|YP_002445038.1| ribonuclease H [Bacillus cereus G9842]
gi|228900277|ref|ZP_04064507.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|228938808|ref|ZP_04101408.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228964678|ref|ZP_04125785.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228971689|ref|ZP_04132310.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978298|ref|ZP_04138675.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|384185603|ref|YP_005571499.1| ribonuclease H [Bacillus thuringiensis serovar chinensis CT-43]
gi|402561312|ref|YP_006604036.1| ribonuclease H [Bacillus thuringiensis HD-771]
gi|410673896|ref|YP_006926267.1| 14.7 kDa ribonuclease H-like protein RnhA [Bacillus thuringiensis
Bt407]
gi|423361655|ref|ZP_17339157.1| hypothetical protein IC1_03634 [Bacillus cereus VD022]
gi|423383090|ref|ZP_17360346.1| hypothetical protein ICE_00836 [Bacillus cereus BAG1X1-2]
gi|423530450|ref|ZP_17506895.1| hypothetical protein IGE_04002 [Bacillus cereus HuB1-1]
gi|423564007|ref|ZP_17540283.1| hypothetical protein II5_03411 [Bacillus cereus MSX-A1]
gi|434374635|ref|YP_006609279.1| ribonuclease H [Bacillus thuringiensis HD-789]
gi|452197921|ref|YP_007478002.1| RNase H [Bacillus thuringiensis serovar thuringiensis str. IS5056]
gi|74492835|gb|EAO55968.1| Ribonuclease HI / Cell wall enzyme EBSB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218541202|gb|ACK93596.1| RNase H [Bacillus cereus G9842]
gi|228781315|gb|EEM29516.1| hypothetical protein bthur0002_15020 [Bacillus thuringiensis Bt407]
gi|228787779|gb|EEM35737.1| hypothetical protein bthur0003_14660 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228794928|gb|EEM42427.1| hypothetical protein bthur0004_15220 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228820657|gb|EEM66682.1| hypothetical protein bthur0008_14690 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228859312|gb|EEN03742.1| hypothetical protein bthur0014_14830 [Bacillus thuringiensis IBL
4222]
gi|326939312|gb|AEA15208.1| ribonuclease H [Bacillus thuringiensis serovar chinensis CT-43]
gi|401079466|gb|EJP87764.1| hypothetical protein IC1_03634 [Bacillus cereus VD022]
gi|401197774|gb|EJR04700.1| hypothetical protein II5_03411 [Bacillus cereus MSX-A1]
gi|401643950|gb|EJS61644.1| hypothetical protein ICE_00836 [Bacillus cereus BAG1X1-2]
gi|401789964|gb|AFQ16003.1| ribonuclease H [Bacillus thuringiensis HD-771]
gi|401873192|gb|AFQ25359.1| ribonuclease H [Bacillus thuringiensis HD-789]
gi|402446965|gb|EJV78823.1| hypothetical protein IGE_04002 [Bacillus cereus HuB1-1]
gi|409173025|gb|AFV17330.1| 14.7 kDa ribonuclease H-like protein RnhA [Bacillus thuringiensis
Bt407]
gi|452103314|gb|AGG00254.1| RNase H [Bacillus thuringiensis serovar thuringiensis str. IS5056]
Length = 128
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|356506670|ref|XP_003522099.1| PREDICTED: uncharacterized protein LOC100817680 [Glycine max]
Length = 1197
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1073 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSD 1130
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL E F +H+ R N ADA
Sbjct: 1131 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAETFDEISFHHVPREENQMADA 1190
Query: 296 QANMG 300
A +
Sbjct: 1191 LATLA 1195
>gi|171185221|ref|YP_001794140.1| ribonuclease H [Pyrobaculum neutrophilum V24Sta]
gi|170934433|gb|ACB39694.1| ribonuclease H [Pyrobaculum neutrophilum V24Sta]
Length = 187
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 178 LEFDGASKG-NPGQAGAGAVLRAEDGSVYRLREGVGIA-----TNNVAEYRALILGLKYA 231
L FDGA + NPG G+ ++G GV A TNN AEY LI GL++A
Sbjct: 5 LFFDGACEPVNPGGVGSYGFAAFKNGEEIHGEGGVVCAGERWCTNNYAEYMGLIRGLEWA 64
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
L G + V GDS+LV Q+ G++++ ++L L K A EL ++F F I + R N+
Sbjct: 65 LAAGESCVNVYGDSQLVVRQMLGVYQVKAEHLKPLYKRAVELSQRFAKFSIGWVPRERNA 124
Query: 292 EAD 294
AD
Sbjct: 125 RAD 127
>gi|30089739|gb|AAP20843.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|108708895|gb|ABF96690.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1547
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN+AEY L+ G++ A
Sbjct: 1131 TWTMAFDGAL--NSQGAGAGFILTSPSGEQFKHAIHLNFRATNNIAEYERLLAGIRAAAA 1188
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N +
Sbjct: 1189 LGVKRLVVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIKP 1248
Query: 294 D 294
D
Sbjct: 1249 D 1249
>gi|28927675|gb|AAO62321.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1665
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++
Sbjct: 1132 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRATAT 1189
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L++ F ++ H+ R N E
Sbjct: 1190 LGAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGIEVRHVYRKDNVEP 1249
Query: 294 D 294
D
Sbjct: 1250 D 1250
>gi|348675545|gb|EGZ15363.1| hypothetical protein PHYSODRAFT_505768 [Phytophthora sojae]
Length = 389
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 275 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 316
+ SF ++HI R N+ AD AN + L+ + EC + T
Sbjct: 67 ARVGSFSLHHIDRQANAHADRLANRALDLR--RTMMECGAHT 106
>gi|41469084|gb|AAS07058.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 706
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 237 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 294
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N E
Sbjct: 295 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRFDGIEVRHVYRKDNVEP 354
Query: 294 D 294
D
Sbjct: 355 D 355
>gi|77549295|gb|ABA92092.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1658
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++
Sbjct: 1095 TWTMAFDGAL--NSQGAGAGFILTSPFGDQFKHAIHLNFRATNNTAEYEGLLAGIRATAA 1152
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1153 LGAKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 1212
Query: 294 D 294
D
Sbjct: 1213 D 1213
>gi|108708395|gb|ABF96190.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1602
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++
Sbjct: 1069 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRATAT 1126
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L++ F ++ H+ R N E
Sbjct: 1127 LGAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKNFDGIEVRHVYRKDNVEP 1186
Query: 294 D 294
D
Sbjct: 1187 D 1187
>gi|356565902|ref|XP_003551175.1| PREDICTED: uncharacterized protein LOC100813923 [Glycine max]
Length = 1292
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1043 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1100
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1101 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1160
Query: 296 QANMG-IYLKD 305
A + I+L++
Sbjct: 1161 LATLASIFLEN 1171
>gi|229178104|ref|ZP_04305475.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
gi|229189778|ref|ZP_04316791.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|423414619|ref|ZP_17391739.1| hypothetical protein IE1_03923 [Bacillus cereus BAG3O-2]
gi|423429599|ref|ZP_17406603.1| hypothetical protein IE7_01415 [Bacillus cereus BAG4O-1]
gi|228593692|gb|EEK51498.1| hypothetical protein bcere0002_14540 [Bacillus cereus ATCC 10876]
gi|228605234|gb|EEK62684.1| hypothetical protein bcere0005_14660 [Bacillus cereus 172560W]
gi|401097539|gb|EJQ05561.1| hypothetical protein IE1_03923 [Bacillus cereus BAG3O-2]
gi|401121905|gb|EJQ29694.1| hypothetical protein IE7_01415 [Bacillus cereus BAG4O-1]
Length = 128
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERALEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|62733054|gb|AAX95171.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549581|gb|ABA92378.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 2041
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKY 230
N + T+ FD A N AGAG +L + + + ATNN+AEY L+ G++
Sbjct: 1623 NNETWTMAFDSAL--NSQGAGAGFILTSPSRDQFNHAIHLNFRATNNIAEYEGLLAGIRA 1680
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
A G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R +N
Sbjct: 1681 AAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKVN 1740
Query: 291 SEAD 294
E D
Sbjct: 1741 IEPD 1744
>gi|147766168|emb|CAN61396.1| hypothetical protein VITISV_027489 [Vitis vinifera]
Length = 639
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLK 229
S + FDGA+ N G G +L + G SV ATNN+ EY A ILGL+
Sbjct: 85 SWRMYFDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLE 142
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
AL+ G + + V GDS LV QIQG WK + L + L +F+ + H+ R
Sbjct: 143 TALELGIRQMEVFGDSNLVLRQIQGEWKTRDAKLKPYHAYLELLVARFEDLRYTHLPRAQ 202
Query: 290 NSEADAQANMG 300
N ADA A +
Sbjct: 203 NQFADALATLA 213
>gi|77554808|gb|ABA97604.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 724
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ F+G+ + + +AG VL + G RL + I AT+N+AEY AL+ GL+ +
Sbjct: 249 TMHFNGSKRFSSTRAGV--VLISLTGE--RLSYVLWIRFSATHNMAEYEALLHGLRITIS 304
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L+ KF + H+LR+ + A
Sbjct: 305 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMIAYRQEVRKLEHKFDGIDLTHVLRHNDEAA 364
Query: 294 DAQANMG 300
D AN G
Sbjct: 365 DRLANFG 371
>gi|110294164|gb|ABG66534.1| reverse transcriptase [Phytophthora ramorum]
Length = 704
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY AL+LG++ A G + V+GDS LV Q++G++ + L GL K K
Sbjct: 7 TNNTAEYTALLLGMRAAADHGATRVHVEGDSTLVIQQVRGIFATRSTRLRGLRKSVKAEM 66
Query: 275 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVE 309
+ + ++HI R N AD AN + + ++E
Sbjct: 67 ARMEHVTLHHIDRQANGHADRLANAALDRRKTKLE 101
>gi|154151098|ref|YP_001404716.1| ribonuclease H [Methanoregula boonei 6A8]
gi|153999650|gb|ABS56073.1| ribonuclease H [Methanoregula boonei 6A8]
Length = 154
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
+ T+ DGAS+GNPG A G + + ++ +G ATNN AEY A++ LK A +
Sbjct: 20 TLTVYTDGASRGNPGLAAYGFIFVRNNEIIFEEARTIGTATNNTAEYYAILSALKKATEF 79
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
+ I V DS+LV QI ++I +LA L E L++ F ++ R
Sbjct: 80 ASESILVYSDSELVIKQINNQYRITKPHLAQLRAELALLEKNFTDLHFRNVPR 132
>gi|406965211|gb|EKD90867.1| ribonuclease H [uncultured bacterium]
Length = 134
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQK 234
T+ DGAS+GNPG A G ++ +DG V G +G+ TNNVAEY A++ Y +
Sbjct: 2 ITVFTDGASRGNPGPAAFGYSIK-KDGEVLHEHGGKIGVNTNNVAEYTAVLEAFAYLKKN 60
Query: 235 GYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
YK +I++ DS+L+ Q+ G++KI N L + + K L+ + I R N
Sbjct: 61 VYKGEPLNIQLIADSQLIVRQLAGVYKIKNLRLKEIFNKIKNLEMDLGNITYKSIPREQN 120
Query: 291 SEADAQAN 298
AD+ AN
Sbjct: 121 KRADSLAN 128
>gi|90265212|emb|CAH67728.1| H0613A10.11 [Oryza sativa Indica Group]
gi|90265218|emb|CAH67666.1| H0315F07.4 [Oryza sativa Indica Group]
Length = 1215
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYA 231
+ T+ FDGA N AGAG +L + SV + + + + ATNN AEY L+ G++ A
Sbjct: 869 TWTMAFDGAL--NSQGAGAGFILTSP--SVDQFKHAIHLNFRATNNTAEYEGLLAGIRAA 924
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G K + V+GD +LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 925 AALGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNI 984
Query: 292 EAD 294
E D
Sbjct: 985 EPD 987
>gi|406959498|gb|EKD86826.1| Ribonuclease H [uncultured bacterium]
Length = 146
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY-RLREGVGIATNNVAEYRALILGLKYALQK----- 234
DG S+GNPG A G + E G V + + +GI TNN+AEY A++ L + L++
Sbjct: 12 DGGSRGNPGPAALGVHIENEKGEVLGEIGKILGITTNNIAEYSAIVAALSWVLERINEMP 71
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ-SFQINHILRNLNSEA 293
I DS L Q+ GL+KI N NL L AKE + + + +HI R N +A
Sbjct: 72 TLVRINFFMDSNLAASQLNGLYKIKNANLRTLYFLAKEKEAEIKIPIYYSHIPREENKKA 131
Query: 294 DAQANMGI 301
D NM +
Sbjct: 132 DRLVNMAL 139
>gi|50511398|gb|AAT77321.1| putative polyprotein [Oryza sativa Japonica Group]
gi|54287583|gb|AAV31327.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1677
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 212 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLA----GLC 267
G +VAEY AL+ GLK ++ G +H+ V+GDS+LV Q+ +W + N+ G+C
Sbjct: 1245 GFQALDVAEYEALLHGLKISISLGIRHLIVRGDSQLVVNQVMKVWSCLDDNMTAYRQGVC 1304
Query: 268 KEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
K L++KF ++ H+LR N AD AN G
Sbjct: 1305 K----LEDKFDGLELTHVLRRNNEAADRLANFG 1333
>gi|356506918|ref|XP_003522220.1| PREDICTED: uncharacterized protein LOC100800605 [Glycine max]
Length = 1467
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1025 TVWFDGAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSD 1082
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1083 VKLLKVYGDSALVIHQLRGEWETRDPKLVPYKAYIKELAKTFDEISFHHVPREENQMADA 1142
Query: 296 QANMG 300
A +
Sbjct: 1143 LATLA 1147
>gi|348665813|gb|EGZ05642.1| hypothetical protein PHYSODRAFT_462993 [Phytophthora sojae]
Length = 538
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 275 EKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAECSSFT 316
+ SF ++HI R N+ AD AN + L+ + EC + T
Sbjct: 67 ARVGSFSLHHIDRQANAHADRLANRALDLR--RTMMECGAHT 106
>gi|22094344|gb|AAM91871.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 552
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA GAG L + G ++ + ATNN AEY L+ G+K A G
Sbjct: 362 MAFDGALNSQ----GAGTGLTSPTGDQFKHAIHLNFRATNNTAEYEGLLAGIKAAAALGV 417
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E D
Sbjct: 418 KRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEPD 475
>gi|398806347|ref|ZP_10565255.1| ribonuclease HI [Polaromonas sp. CF318]
gi|398088264|gb|EJL78830.1| ribonuclease HI [Polaromonas sp. CF318]
Length = 144
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGV-GIATNNVAEYRALILGLKYALQKG 235
T+ DG++ NPG+ G GAVL + DG+ Y + G NN AE RAL+ L+ A Q+G
Sbjct: 7 TIHCDGSAVPNPGRMGLGAVLMSPDGTRYPMSAPAEGRGCNNEAELRALMAALQEARQRG 66
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + D+ +V Q+ G LA L EA+ F S ++ I R+ N EADA
Sbjct: 67 AAALLIHCDNSVVVQQLAGTATEPFLRLAPLFDEARAALLSFASARLVWIPRHRNQEADA 126
Query: 296 QANMGIYLK 304
A + L
Sbjct: 127 LARAAVGLP 135
>gi|356566411|ref|XP_003551425.1| PREDICTED: uncharacterized protein LOC100794033 [Glycine max]
Length = 1199
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1074 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1131
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1132 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1191
Query: 296 QANMG 300
A +
Sbjct: 1192 LATLA 1196
>gi|356523394|ref|XP_003530325.1| PREDICTED: uncharacterized protein LOC100777325 [Glycine max]
Length = 1159
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1035 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1092
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1093 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1152
Query: 296 QANMG 300
A +
Sbjct: 1153 LATLA 1157
>gi|356541586|ref|XP_003539255.1| PREDICTED: uncharacterized protein LOC100809507 [Glycine max]
Length = 1322
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1070 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1127
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1128 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1187
Query: 296 QANMG 300
A +
Sbjct: 1188 LATLA 1192
>gi|356502974|ref|XP_003520289.1| PREDICTED: uncharacterized protein LOC100784699 [Glycine max]
Length = 1826
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1253 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1310
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1311 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1370
Query: 296 QANMG 300
A +
Sbjct: 1371 LATLA 1375
>gi|20043049|gb|AAM08857.1|AC113339_3 Putative retroelement [Oryza sativa Japonica Group]
gi|21672047|gb|AAM74409.1|AC120497_9 Putative retroelement [Oryza sativa Japonica Group]
gi|31430964|gb|AAP52809.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 781
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 140 YVAAAGSTSFSINTQRSHLNADSCLNTQSVPYN-------CYSCTLEFDGASKGNPGQAG 192
Y+AA T +S+ T +S + AD N ++P N + + FDGA N G
Sbjct: 258 YIAA---TPYSV-TIKSQVLADFVAN-WTMPENRSDSQIDNETWIMAFDGAL--NSQGVG 310
Query: 193 AGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQ 251
AG +L + G ++ + ATNN AEY L+ G++ A G K + V+GDS+LV Q
Sbjct: 311 AGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAATVLGVKRLIVKGDSELVANQ 370
Query: 252 IQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ +K ++ L+ E ++L+++F ++ H+ RN N E D A
Sbjct: 371 VHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRNDNIEPDDLA 416
>gi|146304992|ref|YP_001192308.1| ribonuclease H [Metallosphaera sedula DSM 5348]
gi|145703242|gb|ABP96384.1| ribonuclease H [Metallosphaera sedula DSM 5348]
Length = 148
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 180 FDGASK-GNPGQAGAGAVLRAEDGSVYRLREGVGIA--------TNNVAEYRALILGLKY 230
FDG + NPG + +G+V EG+G+A TNNVAEY LI LK
Sbjct: 7 FDGLCEPKNPGGIATFGYVIYINGNVI---EGMGLASEPWSVNSTNNVAEYTGLICLLKK 63
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
L G RV+GDS+LV Q++G + + ++ + L ++AKEL KF S +I I R N
Sbjct: 64 MLTLGVTEARVEGDSQLVIRQLKGEYSVKSKRIIPLYEKAKELLAKFSSVEIEWIPREEN 123
Query: 291 SEAD 294
EAD
Sbjct: 124 KEAD 127
>gi|38567751|emb|CAE76039.1| B1292H11.25 [Oryza sativa Japonica Group]
Length = 1610
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN A+Y L++G++ A
Sbjct: 1054 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAKYEGLLVGIRAAAA 1111
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1112 LGVRRQIVKGDSKLVAKQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1171
Query: 294 D 294
D
Sbjct: 1172 D 1172
>gi|15217332|gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1262
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 175 SCTLEFDGASK------GNP-GQAGAGAVLRAEDGSVYR-----LREGVGIATNNVAEYR 222
S L FDGAS+ G P +AGAG V + G V L+E +NN AEY
Sbjct: 735 SWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYE 791
Query: 223 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
ALI GL AL + IRV GDS+L+ QI ++++ Q L A+ L E F ++
Sbjct: 792 ALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEV 851
Query: 283 NHILRNLN 290
H+ R+ N
Sbjct: 852 MHVPRSRN 859
>gi|356573867|ref|XP_003555077.1| PREDICTED: uncharacterized protein LOC100811111 [Glycine max]
Length = 2265
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +GS + TNNVAEY A ILG++ A+
Sbjct: 1693 LIFDGAVNVFGN----GIGAVIITPEGSHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1748
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1749 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1808
Query: 295 AQANM 299
A A +
Sbjct: 1809 ALATL 1813
>gi|119873226|ref|YP_931233.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
gi|119674634|gb|ABL88890.1| ribonuclease H [Pyrobaculum islandicum DSM 4184]
Length = 187
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 178 LEFDGASKG-NPGQAGAGAVLRAEDGSVYRLREGVGIA-----TNNVAEYRALILGLKYA 231
L FDGA + NPG G+ ++G GV A TNN AEY LI GL++A
Sbjct: 5 LFFDGACEPVNPGGVGSYGFAAFKNGEEVYGEGGVVCAGERWCTNNYAEYMGLIKGLEWA 64
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
L G + V GDS+LV Q+ G++++ ++L L K A EL ++F F I + R N+
Sbjct: 65 LAAGESCLNVYGDSQLVVRQMLGVYQVKAEHLKPLYKHAVELSQRFAKFSIGWVPRERNA 124
Query: 292 EAD 294
AD
Sbjct: 125 RAD 127
>gi|319651260|ref|ZP_08005390.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
gi|317397040|gb|EFV77748.1| ribonuclease H [Bacillus sp. 2_A_57_CT2]
Length = 133
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +GAG ++ +G V R +G N+ AEYRA I L+ ++KGYK +
Sbjct: 7 DGASAGNPGPSGAGIFIK-NNGQVERYSIPLGKMENHEAEYRAFIHALEICIEKGYKTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + + N+ A L + A EL +F F + + + N AD A
Sbjct: 66 FRTDSQLVNRAVEKEF-VKNKKFAPLLENALELTRQFDLFFMKWVPSSENKGADELARAA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|295703581|ref|YP_003596656.1| RNase H [Bacillus megaterium DSM 319]
gi|294801240|gb|ADF38306.1| RNase H [Bacillus megaterium DSM 319]
Length = 133
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA+ GNPG +GAG +++ +G +R +G TN+ AEY AL+ LK L+K Y +
Sbjct: 7 IDGATAGNPGPSGAGILIKG-NGEHHRYAIALGTMTNHEAEYHALLHALKICLEKKYTSV 65
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV + + + N+ A L +EA +L +F+ F I I + N+ AD A
Sbjct: 66 SFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFELFFIKWIPSSQNAGADQLARQ 124
Query: 300 GIYLKD 305
I K+
Sbjct: 125 AINQKE 130
>gi|108709306|gb|ABF97101.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 175 SCTLEFDGASK------GNP-GQAGAGAVLRAEDGSVYR-----LREGVGIATNNVAEYR 222
S L FDGAS+ G P +AGAG V + G V L+E +NN AEY
Sbjct: 742 SWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYE 798
Query: 223 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
ALI GL AL + IRV GDS+L+ QI ++++ Q L A+ L E F ++
Sbjct: 799 ALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEV 858
Query: 283 NHILRNLN 290
H+ R+ N
Sbjct: 859 MHVPRSRN 866
>gi|356566034|ref|XP_003551240.1| PREDICTED: uncharacterized protein LOC100800043 [Glycine max]
Length = 1267
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1085 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1142
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1143 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1202
Query: 296 QANMG 300
A +
Sbjct: 1203 LATLA 1207
>gi|288930955|ref|YP_003435015.1| ribonuclease H [Ferroglobus placidus DSM 10642]
gi|288893203|gb|ADC64740.1| ribonuclease H [Ferroglobus placidus DSM 10642]
Length = 210
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 177 TLEFDGAS-KGNPGQ-AGAGAVLRAEDGSVYRLREGVGIA----TNNVAEYRALILGLKY 230
L FDGA NPG A G V+ G + + + GIA TNN+AEY ALI GL+
Sbjct: 4 VLYFDGACLPVNPGGIATYGFVIITPSGEIVKEK---GIAAEKGTNNIAEYTALIRGLEK 60
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+ G + V+GDS+L Q+ G++ + + N+ L + A EL KF+ + + R N
Sbjct: 61 ALELGIDELIVRGDSQLAIYQMNGVYAVKSPNIIPLWQRAMELAGKFRKIRFEWVPREQN 120
Query: 291 SEAD 294
S AD
Sbjct: 121 SAAD 124
>gi|338808403|gb|AEJ07907.1| putative Huck2 pol protein [Zea luxurians]
Length = 619
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR--LREGVGIATNNVAEYRALILG 227
P T+ FDG+ AGAG + + G R LR A+NNVAEY ALI G
Sbjct: 3 PIQPELWTMFFDGSLMKT--GAGAGLLFVSPLGKHLRYVLRLHFP-ASNNVAEYEALING 59
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A++ G + + +GDS+LV Q+ + + C E + L++KF ++NHI R
Sbjct: 60 LRIAIELGVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFYGLELNHIAR 119
Query: 288 NLNSEADAQANMG 300
N AD A +
Sbjct: 120 RYNETADELAKIA 132
>gi|168057029|ref|XP_001780519.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667997|gb|EDQ54613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 417
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LRE--GVGIATNNVAEYRALILGLKYALQ 233
L FDGAS+ G G V++ G V +RE G GI++ +A+Y+AL+ GLK A
Sbjct: 55 VLYFDGASRKPSAHGGLGVVIKNSKGQVVEEVREFLGGGISSG-LAKYKALLAGLKKANS 113
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
KH+ V+G+S+L+ Q+ G W I + +L K+ + ++F S + I ++ N+ A
Sbjct: 114 LQVKHLLVKGNSQLLINQVVGRWTIKDTHLRDHLKKVWAISKEFDSLLMEFISKDQNTHA 173
Query: 294 DAQANMGIYLKDGQVE 309
AN I KD Q++
Sbjct: 174 GRIANEAID-KDLQIQ 188
>gi|50511389|gb|AAT77312.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50511410|gb|AAT77333.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1551
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN EY L+ G++ A
Sbjct: 1008 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTTEYEGLLAGIRAAAA 1065
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDSKL+ Q+ +K +N L+ E ++L+ +F ++ H+ N E
Sbjct: 1066 LGAKRLIVKGDSKLIANQVHKDYKCSNPELSKYLSEVRKLERRFNGIEVRHVYSKDNVEP 1125
Query: 294 D 294
D
Sbjct: 1126 D 1126
>gi|9759309|dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKG 235
T+ DGAS GNPGQA AG V+R E GS + +G+ + +AE + GL A ++G
Sbjct: 517 TMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERG 576
Query: 236 YKHIRVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
++ +R++ DS LV +Q G+ ++ LA L + K +I H+ R N AD
Sbjct: 577 WRRVRLEVDSALVVGFLQSGI--GDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLAD 634
Query: 295 AQANMGIYLKDG 306
AN L G
Sbjct: 635 GLANYAFTLPFG 646
>gi|294873429|ref|XP_002766623.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239867655|gb|EEQ99340.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 369
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 167 QSVPYNCY-SCTLEFDGASKGNPGQAGAGAVLRAEDG-------SVYRLREGVGIATNNV 218
QS P N + L FDG S+G AG+GAVL +DG + + L+ G G TNN
Sbjct: 210 QSTPSNLMPNLMLTFDGGSQGGQSSAGSGAVLYRKDGNGRFDEIAAWSLKLGPG-RTNNE 268
Query: 219 AEYRALILGLKY--ALQKGYKHIRVQGDSKLVCMQI-QGLWKINNQNLAGLCKEAKE--- 272
AEY AL +GL L + ++ +QGDSKLV Q+ WK+N + L L A++
Sbjct: 269 AEYEALCMGLDKINELIEEPANLTIQGDSKLVISQMGPSQWKVNKEELRQLKDRAEQAIH 328
Query: 273 -LKEKFQSFQINHILRNLNSEADAQANMG 300
L ++ Q I H LR N AD A G
Sbjct: 329 GLMDRMQVTWI-HTLRCNNKRADELATFG 356
>gi|407010421|gb|EKE25320.1| ribonuclease H [uncultured bacterium]
Length = 170
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 21/151 (13%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREGVGIATNNVAEYRALILGLKY 230
N + + DG ++GNPG A G +++ D +Y+ E +G +TNN AEY+A+I L Y
Sbjct: 7 NANALNIYCDGGARGNPGPAAIGFLIKDGADRLIYKHSESIGFSTNNTAEYKAVIAALAY 66
Query: 231 A-----LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLC-------KEAKELKEKFQ 278
L I++ DS+LV Q+ G++KI +Q + L +E L +++Q
Sbjct: 67 LKTRKELVSSSTTIQLFLDSRLVVNQLNGVFKIKDQKMKTLVLAVRNSERELGVLLDEYQ 126
Query: 279 SF------QINHIL--RNLNSEADAQANMGI 301
+ +I + L R LN EADA N +
Sbjct: 127 TLFASKAPRIRYTLVPRELNQEADALVNRAL 157
>gi|38344792|emb|CAE02993.2| OSJNBa0043L09.12 [Oryza sativa Japonica Group]
Length = 1120
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYA 231
+ T+ FDGA N AGAG +L + SV + + + + ATNN AEY L+ G + A
Sbjct: 755 TWTMAFDGAL--NSQGAGAGFILTSP--SVDQFKHAIHLNFRATNNTAEYEGLLAGTRAA 810
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
G K + V+GD +LV Q+ +K +N L+ E ++L+++F ++ H+ R N
Sbjct: 811 AALGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNI 870
Query: 292 EAD 294
E D
Sbjct: 871 EPD 873
>gi|222625223|gb|EEE59355.1| hypothetical protein OsJ_11444 [Oryza sativa Japonica Group]
Length = 350
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 175 SCTLEFDGASK------GNP-GQAGAGAVLRAEDGSVYR-----LREGVGIATNNVAEYR 222
S L FDGAS+ G P +AGAG V + G V L+E +NN AEY
Sbjct: 113 SWELCFDGASRTENDRDGTPRKRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYE 169
Query: 223 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
ALI GL AL + IRV GDS+L+ QI ++++ Q L A+ L E F ++
Sbjct: 170 ALIFGLLLALSMEVRSIRVYGDSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEV 229
Query: 283 NHILRNLN 290
H+ R+ N
Sbjct: 230 MHVPRSRN 237
>gi|359483561|ref|XP_003632976.1| PREDICTED: uncharacterized protein LOC100852629 [Vitis vinifera]
Length = 2289
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV +ATNN+ EY A ILGL+ AL+
Sbjct: 1706 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLTFSNQHLATNNIVEYEACILGLETALEL 1763
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1764 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1823
Query: 295 AQANMG 300
A A +
Sbjct: 1824 ALATLA 1829
>gi|18568254|gb|AAL75988.1|AF466204_3 putative GAG-POL precursor -orf2 protein [Sorghum bicolor]
Length = 756
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRA 223
LN VP ++ FDG+ N AG V +D Y LR + A+NNVAEY A
Sbjct: 269 LNEPPVPDVSDHWSMFFDGSLNINGAGAGILFVSPNKDKLRYILRI-LFPASNNVAEYEA 327
Query: 224 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 283
+ G++ A++ G K + V GD LV Q+ W ++ + C E ++ + F +
Sbjct: 328 CLHGIRLAVELGIKRLYVYGDFALVINQLNKEWDATHEKMDLYCNEIRKWETNFYGIEYI 387
Query: 284 HILRNLNSEADAQANMG 300
H++R+ N ADA + +G
Sbjct: 388 HVVRDKNQAADALSKLG 404
>gi|356524006|ref|XP_003530624.1| PREDICTED: uncharacterized protein LOC100785887 [Glycine max]
Length = 2320
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGS----VYRLREGVGIATNNVAEYRALILGLKYA 231
L FDGA GN G GAV+ +G+ RLR TNNVAEY A ILG++ A
Sbjct: 1748 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLRFD---CTNNVAEYEACILGIEKA 1800
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
+ K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N
Sbjct: 1801 IDLKIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQ 1860
Query: 292 EADAQANM 299
ADA A +
Sbjct: 1861 MADALATL 1868
>gi|384047937|ref|YP_005495954.1| RNase H [Bacillus megaterium WSH-002]
gi|345445628|gb|AEN90645.1| RNase H [Bacillus megaterium WSH-002]
Length = 133
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA+ GNPG +GAG +++ +G +R +G TN+ AEY AL+ LK L+K Y +
Sbjct: 7 IDGATAGNPGPSGAGILIKG-NGEHHRYAVALGTMTNHEAEYHALLHALKICLEKKYTSV 65
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV + + + N+ A L +EA +L +F F I I + N+ AD A
Sbjct: 66 SFRTDSQLVDRAMNQEY-VKNKAFAPLLEEALKLSSQFDLFFIKWIPSSQNAGADQLARQ 124
Query: 300 GIYLKD 305
I K+
Sbjct: 125 AINQKE 130
>gi|50511406|gb|AAT77329.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1467
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 11/148 (7%)
Query: 155 RSHLNADSCLNTQSVPYNCY-------SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRL 207
+S + AD C+ ++P N + + FDGA N AGAG +L + G ++
Sbjct: 1143 KSQVLAD-CVANWTMPENRLDSQTDNETWIMAFDGAL--NSQGAGAGFILTSPSGEQFKH 1199
Query: 208 REGVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGL 266
+ ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K ++ L+
Sbjct: 1200 AIHLNFRATNNTAEYEGLLAGIRAATALGVKQLIVKGDSELVANQVHKDYKCSSPELSKY 1259
Query: 267 CKEAKELKEKFQSFQINHILRNLNSEAD 294
E ++L+++F ++ H+ R N E D
Sbjct: 1260 LAEVRKLEKRFDGIEVRHVYRKDNIEPD 1287
>gi|2829861|gb|AAC00569.1| Unknown protein [Arabidopsis thaliana]
Length = 79
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 46/60 (76%)
Query: 251 QIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEA 310
QI+G WK+N++ LA L KEAK L K SF+I+H+LRNLN++AD QAN+ + L +G+VE
Sbjct: 19 QIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQANLAVRLPEGEVEV 78
>gi|224164518|ref|XP_002338691.1| predicted protein [Populus trichocarpa]
gi|222873212|gb|EEF10343.1| predicted protein [Populus trichocarpa]
Length = 361
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGA N GAGAV+ + D Y + + TNN AEY A ILGL+ AL+
Sbjct: 229 TMFFDGAV--NVYGNGAGAVIISPDKKQYPVSVKLHFECTNNTAEYEACILGLEAALELK 286
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + V GDS L+ Q++G W+ + L + L ++F+ + H+ R N ADA
Sbjct: 287 IKKLDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSTLAKEFEEIRFTHLGREGNHFADA 346
Query: 296 QANMG 300
A +
Sbjct: 347 LATLA 351
>gi|46575949|gb|AAT01310.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 908
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 13/132 (9%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 336 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 391
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + LV Q+ W + N+ +E ++L++KF+ +++H+LR+
Sbjct: 392 RIAISLGIKRL------ILVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVLRH 445
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 446 NNEAADRLANFG 457
>gi|228990707|ref|ZP_04150672.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
gi|228996809|ref|ZP_04156443.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|229004485|ref|ZP_04162226.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228756770|gb|EEM06074.1| hypothetical protein bmyco0002_14400 [Bacillus mycoides Rock1-4]
gi|228762870|gb|EEM11783.1| hypothetical protein bmyco0003_13940 [Bacillus mycoides Rock3-17]
gi|228769233|gb|EEM17831.1| hypothetical protein bpmyx0001_14690 [Bacillus pseudomycoides DSM
12442]
Length = 128
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG +GAG ++ V +L +GI +N+ AEY AL++ LKY ++ Y +
Sbjct: 6 IDGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGIMSNHEAEYHALLVALKYCMEHNYSIV 64
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV ++ + N+ A L +EA + F F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKTYAPLLEEALAYIKSFDLFFIKWIPNSQNKVADELARK 123
Query: 300 GI 301
I
Sbjct: 124 AI 125
>gi|423654475|ref|ZP_17629774.1| hypothetical protein IKG_01463 [Bacillus cereus VD200]
gi|401295986|gb|EJS01609.1| hypothetical protein IKG_01463 [Bacillus cereus VD200]
Length = 128
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKG+PG +GAG ++ + +L +G +N+ AEYRAL+L LKY ++ Y +
Sbjct: 7 DGASKGDPGPSGAGVFIKGVQPPI-QLSVPLGTMSNHEAEYRALLLALKYCIEHNYSTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLDEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|359474674|ref|XP_003631510.1| PREDICTED: uncharacterized protein LOC100243172 [Vitis vinifera]
Length = 2076
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV +ATNN+ EY A ILGL+ AL+
Sbjct: 1475 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSNQHLATNNIVEYEACILGLETALEL 1532
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1533 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDMRYTHLPRAQNQFAD 1592
Query: 295 AQANMG 300
A A +
Sbjct: 1593 ALATLA 1598
>gi|348678932|gb|EGZ18749.1| hypothetical protein PHYSODRAFT_502261 [Phytophthora sojae]
Length = 476
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY ALI GL AL G + + V+GDS L+ Q++G + NN L L +A+ L
Sbjct: 78 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQVRGRYACNNARLRQLRNQARRLL 137
Query: 275 EKFQSFQINHILRNLNSEADAQANMGIYLKDG-QVEAECSS 314
+ +++ H+ R N +AD AN + DG + EC++
Sbjct: 138 RRLDYYELVHVDRLENRDADRLANRAL---DGRRTRTECAT 175
>gi|147795549|emb|CAN67747.1| hypothetical protein VITISV_030426 [Vitis vinifera]
Length = 1605
Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV+ A NN+ EY A ILGL+ AL+
Sbjct: 1144 FDGAA--NHSGYGIGVLLISPHGDHIPRSVHLAFSDRHPAMNNIVEYEACILGLETALEL 1201
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + ++V GDS LV QIQG WK + NL + L +F + H+ R N AD
Sbjct: 1202 GIRQMKVFGDSNLVLRQIQGEWKTRDANLRPYHAYLELLVRRFDDLRYTHLPRVQNQFAD 1261
Query: 295 AQANMG 300
A A +
Sbjct: 1262 ALATLA 1267
>gi|18568246|gb|AAL75983.1|AF466203_12 putative gag-pol precursor -orf2 [Zea mays]
Length = 1007
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR--LREGVGIATNNV 218
D+ L+T + + T+ FDG+ AGAG + + G R LR A+NNV
Sbjct: 445 DTQLSTTPIQPELW--TMFFDGSLMKT--GAGAGLLFISPLGKHLRYVLRLHFP-ASNNV 499
Query: 219 AEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQ 278
AEY AL+ GL+ A++ G + + +GDS+LV Q+ + + C E + L++KF
Sbjct: 500 AEYEALVNGLRIAIKLGVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFF 559
Query: 279 SFQINHILRNLNSEADAQANMG 300
++NHI R N AD A +
Sbjct: 560 GLELNHIARRYNETADELAKIA 581
>gi|357471453|ref|XP_003606011.1| NBS-containing resistance-like protein, partial [Medicago
truncatula]
gi|355507066|gb|AES88208.1| NBS-containing resistance-like protein, partial [Medicago
truncatula]
Length = 260
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS----VYRLREGVGIATNNVAEYRALILGLKYALQ 233
L FDGA N G GAV+ G+ RLR TNN+AEY A I+G++ A+
Sbjct: 102 LIFDGAV--NVFGNGIGAVILTPKGTHIPFTARLRFD---CTNNIAEYEACIMGIEEAID 156
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
K+I + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N A
Sbjct: 157 LRIKNIDIYGDSALVINQIKGKWETHHDGLVPYRDYARRLLTFFNKVELHHIPRDENQMA 216
Query: 294 DAQANMGIYLK 304
DA A + +K
Sbjct: 217 DALATLSSMIK 227
>gi|92886093|gb|ABE88103.1| Ribonuclease H [Medicago truncatula]
Length = 445
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
L FDGA N G GAV+ + G + TNN+AEY A I G++ A+
Sbjct: 221 LVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 278
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
KH+ + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N ADA
Sbjct: 279 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 338
Query: 297 ANM 299
A +
Sbjct: 339 ATL 341
>gi|77555311|gb|ABA98107.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 720
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + GAG VL + G RL + I A++NVAEY L+ GL+ A+
Sbjct: 459 TMHFDGSKRLT--GTGAGLVLISSTGE--RLSYVLWIHFSASHNVAEYEVLLHGLRIAVS 514
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+ S+LV ++ W + N+ +E ++L++KF ++ H+L++ N A
Sbjct: 515 LGIRRLIVRRYSQLVVNEVMKEWSCLDDNMTAYQQEVRKLEDKFDGLELTHVLQHNNEAA 574
Query: 294 DAQANMG 300
D AN G
Sbjct: 575 DRLANFG 581
>gi|229084695|ref|ZP_04216962.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
gi|228698651|gb|EEL51369.1| hypothetical protein bcere0022_13290 [Bacillus cereus Rock3-44]
Length = 128
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG +GAG ++ V +L +GI +N+ AEY AL+ LKY + Y +
Sbjct: 6 IDGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGIMSNHEAEYHALLAALKYCTEHNYNTV 64
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV ++ + N+ A L +EA +KF F I I + N AD A
Sbjct: 65 SFRTDSQLVERAVEKEYA-KNKTYAPLLEEALAYIKKFDLFFIKWIPSSQNKVADELARK 123
Query: 300 GI 301
I
Sbjct: 124 AI 125
>gi|15217214|gb|AAK92558.1|AC051624_16 Putative retroelement [Oryza sativa Japonica Group]
Length = 1429
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FD + + + GAG VL + + RL + I A++NV EY AL+ GL+ A+
Sbjct: 1165 TMHFDESKRLS--GTGAGVVLISP--TRERLSYVLWIHFSASHNVVEYEALLHGLRIAIS 1220
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N A
Sbjct: 1221 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLLHNNKAA 1280
Query: 294 DAQANMG 300
D AN G
Sbjct: 1281 DRLANFG 1287
>gi|406948976|gb|EKD79574.1| ribonuclease H, partial [uncultured bacterium]
Length = 122
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
S T DG ++GNPG A +GA E G R +G+ATNN AEY A+I+ L+ A
Sbjct: 3 SVTFFTDGGARGNPGPAASGA-YSPELGEFKRY---LGVATNNQAEYTAIIMALEAAYHY 58
Query: 235 GYKHIRVQG-----DSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
+H ++Q DS+L Q+ ++K+ N L L + L KF+ H+ R
Sbjct: 59 QQQHPQLQEVNMFMDSELAVRQLNRVYKVKNPELQKLFVKVWNLTTKFKKVTFTHVRREQ 118
Query: 290 NSEA 293
N EA
Sbjct: 119 NKEA 122
>gi|78708135|gb|ABB47110.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FD + + + GAG VL + + RL + I A++NV EY AL+ GL+ A+
Sbjct: 1062 TMHFDESKRLS--GTGAGVVLISP--TRERLSYVLWIHFSASHNVVEYEALLHGLRIAIS 1117
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ W + N+ +E ++L++KF ++ H+L + N A
Sbjct: 1118 LGIRRLIVCGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLLHNNKAA 1177
Query: 294 DAQANMG 300
D AN G
Sbjct: 1178 DRLANFG 1184
>gi|77552045|gb|ABA94842.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 731
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 279 TMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALG 336
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ N E D
Sbjct: 337 VKRLIVKGDSELVTNQVHKDYKCSSLELSKYIAEVRKLEKRFDGIEVRHVYHKDNIEPD 395
>gi|13384382|gb|AAK21350.1|AC024594_14 putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ + FDGA GAG L + G ++ + ATNN AEY L+ G+K A
Sbjct: 128 TWIMAFDGALNSQ----GAGTGLTSPTGDQFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 183
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E
Sbjct: 184 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEP 243
Query: 294 D 294
D
Sbjct: 244 D 244
>gi|147863318|emb|CAN78356.1| hypothetical protein VITISV_007317 [Vitis vinifera]
Length = 879
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGL 228
C L FDGA+ N + G G +L + G + + V +A TNN+ EY A I GL
Sbjct: 557 CRLYFDGAA--NQSRFGIGILLISPQGD--HIPKSVRLAFSDHHRLTNNIVEYEACITGL 612
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ L G + + + GDS LV Q QG+W+ ++ L L + F + H+ R
Sbjct: 613 ETTLDLGIRQLEIHGDSNLVIQQTQGIWRTRDEKLKPYHAYLDLLSDGFDVLRYIHLPRA 672
Query: 289 LNSEADAQANMG 300
N ADA A +
Sbjct: 673 ENQFADALATLA 684
>gi|62734328|gb|AAX96437.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550054|gb|ABA92851.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 425
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA N GAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 1 MAFDGAL--NSQGPGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGA 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E D
Sbjct: 59 KRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEPDDL 118
Query: 297 A 297
A
Sbjct: 119 A 119
>gi|77551183|gb|ABA93980.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1567
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGA +L + G ++ + ATNN AEY L+ G++
Sbjct: 1046 TWTMAFDGAL--NSQGAGARFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAVAA 1103
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1104 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1163
Query: 294 D 294
D
Sbjct: 1164 D 1164
>gi|110288962|gb|AAP53313.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 411
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G+K A
Sbjct: 252 TWTMAFDGAL--NNQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 309
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N E
Sbjct: 310 LGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKMFNGIEVRHVYRKGNIEP 369
Query: 294 D 294
D
Sbjct: 370 D 370
>gi|152975120|ref|YP_001374637.1| ribonuclease H [Bacillus cytotoxicus NVH 391-98]
gi|152023872|gb|ABS21642.1| ribonuclease H [Bacillus cytotoxicus NVH 391-98]
Length = 132
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL++ LKY ++ Y +
Sbjct: 6 IDGASKGNPGPSGAGVFIKGIQQPV-QLSIPLGSMSNHEAEYHALLIALKYCIKHNYSIV 64
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+LV I+ + N+ A L +EA +KF+ F I + + N AD A
Sbjct: 65 SFRTDSQLVERAIEKEYA-KNKTYAPLLQEALTYIDKFELFFIKWVPSSQNKVADELARK 123
Query: 300 GI 301
I
Sbjct: 124 AI 125
>gi|9927274|dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica Group]
Length = 2876
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 178 LEFDGASK------GNPGQ-AGAGAVLRAEDGSVYR-----LREGVGIATNNVAEYRALI 225
L FDGAS+ G P + AGAG V + G V L+E +NN AEY ALI
Sbjct: 2284 LYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEE---CSNNEAEYEALI 2340
Query: 226 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
GL AL + +R GDS+L+ QI ++++ L A+ L +KF+ ++ H+
Sbjct: 2341 FGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEVIHV 2400
Query: 286 LRNLN 290
R+ N
Sbjct: 2401 PRSKN 2405
>gi|110289284|gb|ABG66150.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 536
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ + FDGA GAG L + G ++ + ATNN AEY L+ G+K A
Sbjct: 128 TWIMAFDGALNSQ----GAGTGLTSPTGDQFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 183
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N LA E ++L+ KF ++ H+ R N E
Sbjct: 184 LGVKRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKLERKFNDIEVRHVYRKDNVEP 243
Query: 294 DAQA 297
D A
Sbjct: 244 DDLA 247
>gi|356519007|ref|XP_003528166.1| PREDICTED: uncharacterized protein LOC100792217 [Glycine max]
Length = 2265
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1693 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1748
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1749 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1808
Query: 295 AQANM 299
A A +
Sbjct: 1809 ALATL 1813
>gi|397620844|gb|EJK65946.1| hypothetical protein THAOC_13149 [Thalassiosira oceanica]
Length = 305
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 37/170 (21%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAED---GSVYRLREGVG-IATNNVAEYRALILGLKYA 231
T+ FDG S+GNPG +GAGA + D G + +RE G TNN AEY L+ GLK A
Sbjct: 126 ITIFFDGGSRGNPGLSGAGAEVTISDGQGGRRFSIREFCGDKQTNNFAEYTGLVAGLKKA 185
Query: 232 ------LQKGYK-------------HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE 272
L K ++R++GDSKL+ Q G W+ N N+ L ++A
Sbjct: 186 RDIIIGLNKETSVTDASLASRLPIFNLRIRGDSKLIIQQQNGSWQCKNANILPLYRKAAL 245
Query: 273 LKEKFQ------SFQINHILRNLNSEADAQANMGI--------YLKDGQV 308
L + + H+ R N AD AN + + +DG++
Sbjct: 246 LVADLRKLDPRSTVTFEHVYREQNKVADNLANEAMDARRSWTTFTEDGEI 295
>gi|356498995|ref|XP_003518330.1| PREDICTED: uncharacterized protein LOC100818337 [Glycine max]
Length = 2323
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1866
Query: 295 AQANM 299
A A +
Sbjct: 1867 ALATL 1871
>gi|19881548|gb|AAM00949.1|AC021892_13 Putative retroelement [Oryza sativa Japonica Group]
gi|31431082|gb|AAP52913.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1945
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 25/132 (18%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGL 228
N T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL
Sbjct: 1385 NMEHWTMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGL 1440
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A+ G K + V+GDS+LV Q+ ++L++KF+ +++H+LR+
Sbjct: 1441 RIAISLGIKRLIVRGDSQLVVNQV------------------RKLEDKFEGLELSHVLRH 1482
Query: 289 LNSEADAQANMG 300
N AD AN G
Sbjct: 1483 NNEAADRLANFG 1494
>gi|88602713|ref|YP_502891.1| ribonuclease H [Methanospirillum hungatei JF-1]
gi|88188175|gb|ABD41172.1| ribonuclease H [Methanospirillum hungatei JF-1]
Length = 134
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGV---GIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG A ++ E+G+ R+ + V G TNNVAEY A+I L A ++ +
Sbjct: 7 DGASRGNPGPAACSYQIKDENGN--RIADYVCFLGQTTNNVAEYTAIIKALTRAAEETKE 64
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKF 277
I V DS+LV QI G+++IN +L L E L +F
Sbjct: 65 AIHVYSDSQLVIRQITGVYRINKPHLKALYDEVMVLASRF 104
>gi|390562254|ref|ZP_10244488.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173180|emb|CCF83789.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 139
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 178 LEFDGASKGNPGQAGAGAV-LRAEDG--SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
L FDG + GNPG AG G+ LR +G + RL G + TNN AEYR LI GL+ AL
Sbjct: 12 LVFDGGALGNPG-AGYGSFQLRDREGFCEISRLDFGDNV-TNNQAEYRTLIAGLEAALGH 69
Query: 235 ----GYK----HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
G+ +RV+ DS+LV Q+ G WK+ + NL L A+EL +F S I
Sbjct: 70 AGSLGWHPRTLRVRVRTDSQLVVEQVLGRWKVRHPNLQPLSTRARELLARFGSTDI 125
>gi|379318425|pdb|3U3G|D Chain D, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318426|pdb|3U3G|B Chain B, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318427|pdb|3U3G|C Chain C, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|379318428|pdb|3U3G|A Chain A, Structure Of Lc11-Rnase H1 Isolated From Compost By
Metagenomic Approach: Insight Into The Structural Bases
For Unusual Enzymatic Properties Of Sto-Rnase H1
gi|258450519|gb|ACV72189.1| ribonuclease H [uncultured organism]
Length = 140
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQKGYK-- 237
DG ++GNPG AG G V+ E G +++ +G TNNVAEY ALI L+ G K
Sbjct: 9 DGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLV 68
Query: 238 --HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK-EKFQSFQINHILRNLNSEAD 294
+ V+ DS+L+ Q+QG++K+ L + +K E+ + HI R N+ AD
Sbjct: 69 DMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARAD 128
Query: 295 AQANMGI 301
N I
Sbjct: 129 ELVNEAI 135
>gi|356551968|ref|XP_003544344.1| PREDICTED: uncharacterized protein LOC100804218 [Glycine max]
Length = 2290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1718 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1773
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1774 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1833
Query: 295 AQANM 299
A A +
Sbjct: 1834 ALATL 1838
>gi|20279463|gb|AAM18743.1|AC092548_21 putative polyprotein [Oryza sativa Japonica Group]
Length = 356
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G+K A
Sbjct: 197 TWTMAFDGAL--NNQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIKAAAA 254
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N E
Sbjct: 255 LGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKMFNGIEVRHVYRKGNIEP 314
Query: 294 D 294
D
Sbjct: 315 D 315
>gi|448431773|ref|ZP_21585284.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
gi|445687549|gb|ELZ39832.1| ribonuclease H [Halorubrum tebenquichense DSM 14210]
Length = 214
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQK 234
L DG+S+GNPG AGAGAVLRA DG RL VG + NN AEY AL LGL+ AL
Sbjct: 81 VVLYVDGSSRGNPGPAGAGAVLRAADGPTVRLGRPVGARSENNTAEYAALHLGLE-ALAA 139
Query: 235 GYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF---QINHILRNL 289
++ + V+ DS+ V + G + + A ++E+ + + H+ +
Sbjct: 140 RWEPAAVEVRIDSRTVIDDVWG----DAEEFAAAAPYRPGIRERLAALPACEWTHLADSD 195
Query: 290 NSEADAQANMG 300
+ ADA+A +G
Sbjct: 196 PNPADARAAVG 206
>gi|356561959|ref|XP_003549243.1| PREDICTED: uncharacterized protein LOC100795062 [Glycine max]
Length = 2323
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1866
Query: 295 AQANM 299
A A +
Sbjct: 1867 ALATL 1871
>gi|62733850|gb|AAX95959.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77550305|gb|ABA93102.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1600
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N GAG +L + ++ + ATNN AEY L+ G++ A
Sbjct: 1031 TWTMAFDGAL--NSQATGAGFILMSPSRDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1088
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + ++GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 1089 LGVKRLIMKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1148
Query: 294 D 294
D
Sbjct: 1149 D 1149
>gi|356519836|ref|XP_003528575.1| PREDICTED: uncharacterized protein LOC100807419 [Glycine max]
Length = 2270
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVG-IATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + + TNN+AEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFVCTNNMAEYEACILGIEKAIDL 1753
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1754 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1813
Query: 295 AQANM 299
A A +
Sbjct: 1814 ALATL 1818
>gi|224123090|ref|XP_002330336.1| predicted protein [Populus trichocarpa]
gi|222871540|gb|EEF08671.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ TL FDG N GAGAV+ + + Y + + TNN AEY A I+GL+ AL+
Sbjct: 141 TWTLYFDGVV--NVSGNGAGAVVISPENKQYPVSARLLFECTNNTAEYEACIIGLEVALE 198
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
K + V GDS L+ Q++G W+ N+ L L +F+ + HI R+ N A
Sbjct: 199 LKAKKLEVFGDSLLIIYQVKGEWQTKNEKLKLYQNYLLRLANEFEEIKFTHISRDKNQFA 258
Query: 294 DAQANMG 300
DA +
Sbjct: 259 DALTTLA 265
>gi|291279864|ref|YP_003496699.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
gi|290754566|dbj|BAI80943.1| ribonuclease HI [Deferribacter desulfuricans SSM1]
Length = 141
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGA GNPG AG G V+ ED +V + E +G ATNN+AEY ALI L+ K + +
Sbjct: 11 DGACSGNPGPAGIGFVIYDEDDNVIKECSEYLGEATNNIAEYTALIKALESIKDKKHYKL 70
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
+ DS+L+ QI+G++K+ N+NL L + EL + F++ HI R NS AD A
Sbjct: 71 IIYSDSELLVKQIKGVYKVKNKNLKKLYDKVLELIQGV-DFELIHIPREDNSYADKLAKK 129
Query: 300 GI 301
I
Sbjct: 130 AI 131
>gi|224147145|ref|XP_002336419.1| predicted protein [Populus trichocarpa]
gi|222834953|gb|EEE73402.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKGY 236
+ FDGA N GAGAV+ + D Y + + TNN AEY A ILGL+ AL+
Sbjct: 349 MYFDGAV--NVYGNGAGAVIISPDKKQYPVSVKLQFGCTNNTAEYEACILGLEAALELNI 406
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N ADA
Sbjct: 407 RKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAREFEEIEFTHLGREGNQFADAL 466
Query: 297 ANMG 300
A +
Sbjct: 467 ATLA 470
>gi|393201336|ref|YP_006463178.1| ribonuclease HI [Solibacillus silvestris StLB046]
gi|406665577|ref|ZP_11073349.1| 14.7 kDa ribonuclease H-like protein [Bacillus isronensis B3W22]
gi|327440667|dbj|BAK17032.1| ribonuclease HI [Solibacillus silvestris StLB046]
gi|405386442|gb|EKB45869.1| 14.7 kDa ribonuclease H-like protein [Bacillus isronensis B3W22]
Length = 129
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G ++ E +G N+ AE+ AL+ GL+ AL+ G +
Sbjct: 7 DGASAGNPGPSGIGIFIKGE-GQHVKISEPIGNTNNHQAEFTALLRGLEEALKIGSSFVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V+ DSK+V I + + N++ ++A L E+F F I I N AD A
Sbjct: 66 VRSDSKIVVSSIDKAY-VKNEDFKPYLEQALSLIEQFDLFFIKWIPEKENKAADVLAREA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|54291863|gb|AAV32231.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 3092
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + G ++ + ATNN+ EY L+ G++ A
Sbjct: 2633 TWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNIVEYEGLLAGIRAAAA 2690
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GD +LV Q+ +K +N L+ E +L++ F ++ HI R N E
Sbjct: 2691 LGVKRLIVKGDFELVANQVHKDYKCSNPELSKYLAEVSKLEKMFDGIEVRHIYRKDNIEQ 2750
Query: 294 D 294
D
Sbjct: 2751 D 2751
>gi|356524171|ref|XP_003530705.1| PREDICTED: uncharacterized protein LOC100812971 [Glycine max]
Length = 2270
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1753
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1754 KSKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKHLLTFFNKVELHHIPRDENQMAD 1813
Query: 295 AQANM 299
A A +
Sbjct: 1814 ALATL 1818
>gi|448538741|ref|ZP_21622987.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
gi|445700607|gb|ELZ52599.1| ribonuclease H [Halorubrum hochstenium ATCC 700873]
Length = 214
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYALQK 234
L DG+S+GNPG AGAGAVLRA +G RL VG + NN AEY AL LGL+ AL
Sbjct: 81 VVLYVDGSSRGNPGPAGAGAVLRAANGPTVRLGRPVGARSENNTAEYAALHLGLE-ALAA 139
Query: 235 GYKH--IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF---QINHILRNL 289
++ + V+ DS+ V + G + + LA ++E+ + + H+ +
Sbjct: 140 RWEPAAVEVRIDSRTVIDDVWG----DAEGLAAAAPYRPAIRERLAALPACEWTHLADSD 195
Query: 290 NSEADAQANMG 300
+ ADA+A +G
Sbjct: 196 PNPADARAAVG 206
>gi|108709491|gb|ABF97286.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 1515
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N A AG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 927 TWTMAFDGAL--NSQGARAGFILTSLSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 984
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+L+ Q+ +K N L+ E ++L+++F ++ H+ R N E
Sbjct: 985 LGAKRLIVKGDSELIANQVHKDYKCTNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1044
Query: 294 D 294
D
Sbjct: 1045 D 1045
>gi|18568245|gb|AAL75982.1|AF466203_11 putative prpol [Zea mays]
Length = 1854
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 7/140 (5%)
Query: 164 LNTQ--SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR--LREGVGIATNNVA 219
++TQ + P T+ FDG+ AGAG + + G R LR A+NNVA
Sbjct: 1309 VDTQLPTTPIQPELWTMFFDGSLMKT--GAGAGLLFISPLGKHLRYVLRLHFP-ASNNVA 1365
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY AL+ GL+ A++ G + +GDS+LV Q+ + + C E + L++KF
Sbjct: 1366 EYEALVNGLRIAIELGVIRLDARGDSQLVIDQVMKNSHCRDPKMEAYCDEVRRLEDKFFG 1425
Query: 280 FQINHILRNLNSEADAQANM 299
++NHI R N AD A +
Sbjct: 1426 LELNHIARRYNETADELAKI 1445
>gi|147856817|emb|CAN81341.1| hypothetical protein VITISV_003207 [Vitis vinifera]
Length = 2072
Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1573 FDGAA--NHSGYGIGVLLISPHGDHXPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1630
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1631 GIRQMEVFGDSNLVLRQIQGEWKTRDXKLRPYHAYLELLVXRFEDLRYTHLPRAQNQFAD 1690
Query: 295 AQANMG 300
A A +
Sbjct: 1691 ALATLA 1696
>gi|47566073|ref|ZP_00237111.1| RNase H [Bacillus cereus G9241]
gi|47556990|gb|EAL15320.1| RNase H [Bacillus cereus G9241]
Length = 128
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKTFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147775038|emb|CAN68243.1| hypothetical protein VITISV_023681 [Vitis vinifera]
Length = 505
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKY 230
L FDGA+ N G G +L + G + V +A TNN+ EY A I+GL+
Sbjct: 9 LYFDGAA--NQSGFGIGILLISPQGD--HIPRSVWLAFSDHHQLTNNIVEYEACIIGLEI 64
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL G + + +QGDS LV Q QG+W+ ++ L L ++F + H+ R N
Sbjct: 65 ALDLGIRQLEIQGDSNLVIKQTQGIWRTWDEKLKPYHAYLDLLIDRFDVLRYIHLPRAEN 124
Query: 291 SEADAQANMG 300
ADA A +
Sbjct: 125 QFADAFATLA 134
>gi|156937941|ref|YP_001435737.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
gi|156566925|gb|ABU82330.1| ribonuclease H [Ignicoccus hospitalis KIN4/I]
Length = 163
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 11/128 (8%)
Query: 178 LEFDGASKG-NPGQAGAGAVLRAEDGSVYRLREG-VGIA------TNNVAEYRALILGLK 229
L FDG + NPG + E G V +G VG+ TNNVAEY ALI L+
Sbjct: 11 LYFDGLCEPVNPGGVATYGFVVKEGGKVLCSGKGLVGVGARGDDVTNNVAEYTALIKALE 70
Query: 230 YALQKGYK--HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+KG + + V+GDS+L Q++G +K+ + +A L K AKEL KF++ ++ + R
Sbjct: 71 CLLEKGLEGAEVVVKGDSQLAIRQLRGEYKVRSPRIAPLYKRAKELLSKFKA-ELQWVPR 129
Query: 288 NLNSEADA 295
LN EADA
Sbjct: 130 ELNEEADA 137
>gi|87162496|gb|ABD28291.1| Integrase, catalytic region; Ribonuclease H [Medicago truncatula]
Length = 981
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS----VYRLREGVGIATNNVAEYRALILGLKYALQ 233
L FDGA N +G GAVL G+ RLR TNN+AEY A I+G++ A+
Sbjct: 409 LIFDGAV--NVYGSGIGAVLITPKGTHIPFTARLRFD---CTNNIAEYEACIMGIEEAID 463
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
K I + GDS LV QI+G W+ + L A+ L F +++H+ R+ N A
Sbjct: 464 LRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMA 523
Query: 294 DAQANM 299
DA A +
Sbjct: 524 DALATL 529
>gi|395646607|ref|ZP_10434467.1| ribonuclease H [Methanofollis liminatans DSM 4140]
gi|395443347|gb|EJG08104.1| ribonuclease H [Methanofollis liminatans DSM 4140]
Length = 140
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS+GNPG A A A + DG R G +GIATNN AEYRA+I L A + +
Sbjct: 12 DGASRGNPGHA-AYAFIFVRDGRAVLERSGYIGIATNNTAEYRAIIAALAEAAKDTDGPV 70
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
RV DS+LV QI G +++N ++L L E L +F S + R
Sbjct: 71 RVYSDSELVIRQITGAYRVNKEHLRDLKDEVLRLAGRFSSVTFASVRR 118
>gi|224119068|ref|XP_002331317.1| predicted protein [Populus trichocarpa]
gi|222873900|gb|EEF11031.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKGY 236
+ FDGA N GAGAV+ + D Y + + + TNN AEY A ILGL+ AL+
Sbjct: 142 MYFDGAV--NICGNGAGAVIISPDKKQYPVSVKLQLGCTNNTAEYEACILGLEAALELNI 199
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N ADA
Sbjct: 200 RKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAGEFEEIEFTHLGREGNQFADAL 259
Query: 297 ANMG 300
A +
Sbjct: 260 ATLA 263
>gi|440577271|emb|CCI55279.1| PH01B001G05.2 [Phyllostachys edulis]
Length = 2097
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
TL FDG+ +GAG VL + G + + ATNNVAEY L+ GL+ A G
Sbjct: 1505 TLYFDGSLMLQ--GSGAGVVLISPTGEHIKYAIQLNFPATNNVAEYEGLLAGLRVARSLG 1562
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V+GDS+LV Q+ ++ ++ ++ E ++L++ F FQI HI R N D
Sbjct: 1563 IRRLLVKGDSQLVANQVGKEYQCSSTKMSSYLAEVRKLEKHFFGFQIQHIPRKENFLVDQ 1622
Query: 296 QANMG 300
A M
Sbjct: 1623 LARMA 1627
>gi|32483247|emb|CAE02548.1| OSJNBb0069N01.14 [Oryza sativa Japonica Group]
Length = 722
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 150 SINTQRSHLNADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE 209
S+ + R LN + C+ VP + +L GA GAG L + G V +
Sbjct: 579 SLRSTRMKLNPEKCVF--GVPVMHFDGSLNLQGA--------GAGVTLTSPSGDVLKYVV 628
Query: 210 GVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCK 268
+ ATNN+ EY L++GL+ + G + + V GDS+LV Q+ ++ + + +
Sbjct: 629 RLDFRATNNMVEYEGLLVGLRAVARVGIRRLIVLGDSQLVVNQVSKEYQCTDPQMDAYVR 688
Query: 269 EAKELKEKFQSFQINHILRNLNSEAD 294
E + ++ F ++ HI R N+ AD
Sbjct: 689 EVRRMERHFDGLELRHIPRRDNAVAD 714
>gi|356566612|ref|XP_003551524.1| PREDICTED: uncharacterized protein LOC100805548 [Glycine max]
Length = 2323
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1751 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1806
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1807 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1866
Query: 295 AQANM 299
A A +
Sbjct: 1867 ALATL 1871
>gi|392404409|ref|YP_006441021.1| ribonuclease H [Turneriella parva DSM 21527]
gi|390612363|gb|AFM13515.1| ribonuclease H [Turneriella parva DSM 21527]
Length = 148
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 19/151 (12%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQA--GAGAVLRAEDGSVYRLR-----------EG 210
+N S P N Y C DGAS+GNPG A G A ED S+ R + +
Sbjct: 1 MNPVSEPINIY-C----DGASRGNPGPASFGVAAFSGNEDVSLGRFKNDEKTALFTIEQK 55
Query: 211 VGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEA 270
+G TNN AEY A++ L ++ + R+ DS+LV Q+QG +K+ +NL G EA
Sbjct: 56 LGNRTNNEAEYAAILAALNKCIELKIEAPRLISDSELVIRQLQGRYKVKGENLKGPYAEA 115
Query: 271 KELKEKFQSFQINHILRNLNSEADAQANMGI 301
L + Q+ H+ R N AD AN +
Sbjct: 116 LRLAAVVKP-QLVHVPREKNQIADFLANRAL 145
>gi|356561241|ref|XP_003548891.1| PREDICTED: uncharacterized protein LOC100803738 [Glycine max]
Length = 2190
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + T N+AEY A ILG++ A+
Sbjct: 1618 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTKNMAEYEACILGIEKAIDL 1673
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1674 GIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1733
Query: 295 AQANM 299
A A +
Sbjct: 1734 ALATL 1738
>gi|57834067|emb|CAD40313.2| OSJNBb0013O03.8 [Oryza sativa Japonica Group]
Length = 717
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGL 228
P + + T+ FDGA N AGAG +L + G ++ + TNN+AEY L+ G+
Sbjct: 227 PTDNETWTMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRVTNNIAEYEGLLAGI 284
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A G K + V+GDS+LV Q+ +K ++ L+ E ++L+ +F ++ H+
Sbjct: 285 RAAAALGVKWLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLERRFDGIEVRHVYHK 344
Query: 289 LNSEAD 294
N E D
Sbjct: 345 DNIEPD 350
>gi|29837770|gb|AAP05806.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|50399970|gb|AAT76358.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 964
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N A AG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 376 TWTMAFDGAL--NSQGARAGFILTSLSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 433
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+L+ Q+ +K N L+ E ++L+++F ++ H+ R N E
Sbjct: 434 LGAKRLIVKGDSELIANQVHKDYKCTNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 493
Query: 294 DAQA 297
D A
Sbjct: 494 DDLA 497
>gi|356503020|ref|XP_003520310.1| PREDICTED: uncharacterized protein LOC100811791 [Glycine max]
Length = 1289
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1047 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1104
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GD LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1105 VKLLKVYGDLALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1164
Query: 296 QANMG 300
A +
Sbjct: 1165 LATLA 1169
>gi|133751139|gb|ABO37965.1| putative pol protein [Vitis vinifera]
Length = 276
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 15 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 74
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 75 VGRFDDLRYTHLPRAXNQFADALATLA 101
>gi|356522885|ref|XP_003530073.1| PREDICTED: uncharacterized protein LOC100789592 [Glycine max]
Length = 2315
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNNVAEY A ILG++ A+
Sbjct: 1743 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYEACILGIEKAIDL 1798
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1799 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1858
Query: 295 AQANM 299
A A +
Sbjct: 1859 ALATL 1863
>gi|147768439|emb|CAN73637.1| hypothetical protein VITISV_020488 [Vitis vinifera]
Length = 2301
Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1726 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1783
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1784 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEGLRYTHLPRAQNQFAD 1843
Query: 295 AQANMG 300
A A +
Sbjct: 1844 ALATLA 1849
>gi|16905189|gb|AAL31059.1|AC090120_5 putative gag-pol precursor [Oryza sativa Japonica Group]
gi|31432773|gb|AAP54366.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 684
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + ++ + ATNN EY L+ G++ A
Sbjct: 366 TWTMAFDGAL--NSQGAGAGFILTSPSRDQFKHAIHLNFRATNNTVEYEGLLAGIRAAAT 423
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ + ++L+++F ++ H+ R N E
Sbjct: 424 LGAKRLIVKGDSELVANQVHKDYKCSNSELSKYLADVRKLEKRFDRIEVRHVYRKDNVEP 483
Query: 294 DAQA 297
D A
Sbjct: 484 DDLA 487
>gi|356566094|ref|XP_003551270.1| PREDICTED: uncharacterized protein LOC100784162 [Glycine max]
Length = 1145
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FD AS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1019 TVWFDEAS--NILGHGVGAVLVSPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1076
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1077 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKTYIKELAKNFDEISFHHVPREENQMADA 1136
Query: 296 QANMG 300
A +
Sbjct: 1137 LATLA 1141
>gi|374584172|ref|ZP_09657264.1| ribonuclease H [Leptonema illini DSM 21528]
gi|373873033|gb|EHQ05027.1| ribonuclease H [Leptonema illini DSM 21528]
Length = 143
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 15/131 (11%)
Query: 181 DGASKGNPGQAGAGAVL---RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG A A++ + ++ RL + +G ATNNVAEY+ LILGL+ L K
Sbjct: 8 DGASRGNPGPAACAAIIYKNSPDSDALLRLGKVLGTATNNVAEYQGLILGLEGLLDHLAK 67
Query: 238 ----------HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
HIR+ DS+L+ Q+ G +K+ ++ + L AK + +F + + H+ R
Sbjct: 68 DGVAPASVSLHIRM--DSELIIRQLTGQYKVKHEAMKPLFARAKGMLSQFAAVRPEHVRR 125
Query: 288 NLNSEADAQAN 298
N EAD AN
Sbjct: 126 EFNKEADQLAN 136
>gi|356570351|ref|XP_003553353.1| PREDICTED: uncharacterized protein LOC100790215 [Glycine max]
Length = 2317
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1745 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1800
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L AK L F +++HI R+ N AD
Sbjct: 1801 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYAKRLLTFFNKVELHHIPRDENQMAD 1860
Query: 295 AQANM 299
A A +
Sbjct: 1861 ALATL 1865
>gi|449448948|ref|XP_004142227.1| PREDICTED: uncharacterized protein LOC101212475 [Cucumis sativus]
Length = 1388
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVG-IATNNVAEYRALILGLKYALQKG 235
T+ FDGA++ + AGAG VL + + + + + +NNVAEY+ALI+GL+ AL+ G
Sbjct: 906 TMYFDGATRRS--GAGAGIVLISPEKHMLPYSFALSELCSNNVAEYQALIIGLQIALEIG 963
Query: 236 YKHIRVQGDSKLVCMQIQGLWKI----NNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
I V GDSKL+ + L I L A++ EKF + + H+ R N
Sbjct: 964 VSFIEVYGDSKLIIIPQLSLSLIYCVERMLALKPYFAYARQSMEKFDNVMLEHVPRVENK 1023
Query: 292 EADAQANMGIYL 303
ADA AN+ L
Sbjct: 1024 RADALANLATAL 1035
>gi|357420376|ref|YP_004933368.1| ribonuclease H [Thermovirga lienii DSM 17291]
gi|355397842|gb|AER67271.1| ribonuclease H [Thermovirga lienii DSM 17291]
Length = 199
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 3/124 (2%)
Query: 180 FDGASKGNPGQAGAGA-VLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
FDGAS+GNPG+AGAGA ++ G + ++ + +G TNN AEY ALIL L+ L +
Sbjct: 6 FDGASRGNPGEAGAGACIVDFGKGQILWKESKYLGKRTNNEAEYEALILLLRELLNRKLY 65
Query: 238 HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQA 297
+ V+GDSKLV Q+ G WKI L L +EA L +K ++ ++ I R NS AD +
Sbjct: 66 NCVVKGDSKLVVNQMLGNWKIREPRLLPLAEEALFLIDKTKA-RLQWIPRQENSLADNLS 124
Query: 298 NMGI 301
N I
Sbjct: 125 NKAI 128
>gi|332983014|ref|YP_004464455.1| ribonuclease H [Mahella australiensis 50-1 BON]
gi|332700692|gb|AEE97633.1| ribonuclease H [Mahella australiensis 50-1 BON]
Length = 287
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 53/100 (53%)
Query: 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQ 233
Y T+ DGA GNPG G G V+ +++ E G TNN AEY A+I L+Y +
Sbjct: 15 YQYTVNVDGACAGNPGLMGIGGVIVKSGETIHSFSEAKGFGTNNEAEYLAVITALEYMIP 74
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
+ + + DS+LV QI G++ IN +LA L + L
Sbjct: 75 LCPESVIIISDSQLVVNQINGIYGINYPHLAKLFNRVQTL 114
>gi|4417309|gb|AAD20433.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 889
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
L DG+S N +G G L + G V +G A+NN +EY ALI G+K A +KG
Sbjct: 645 LHVDGSS--NRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGI 702
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ I DS+LV Q G ++ ++ + + K L ++F+SF++ I R N+ AD
Sbjct: 703 REIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTL 762
Query: 297 ANMG 300
A +
Sbjct: 763 AALA 766
>gi|378551377|ref|ZP_09826593.1| hypothetical protein CCH26_14859 [Citricoccus sp. CH26A]
Length = 342
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALIL 226
+P + +E DG S+GNPG AG GA++R G + + +G A+NNVAEY L+
Sbjct: 1 MPVSERVLQVEADGGSRGNPGVAGYGALVRDPATGKILDIDAAPLGRASNNVAEYSGLVA 60
Query: 227 GLKYALQ-KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
GL A + V+ DSKLV Q+ G WKI + ++ L +A+ + + + I
Sbjct: 61 GLTMARNLDPDARVHVKMDSKLVVEQMSGRWKIKHADMQKLAGQARAILPQGR-VTYEWI 119
Query: 286 LRNLNSEADAQAN 298
R N +AD +N
Sbjct: 120 PREKNKDADLLSN 132
>gi|356565782|ref|XP_003551116.1| PREDICTED: uncharacterized protein LOC100792455 [Glycine max]
Length = 974
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKH 238
FDGAS N G GAVL + D +G TNN+AEY A LG++ A+ K
Sbjct: 404 FDGAS--NALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVKL 461
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++V GDS LV Q++G W+ + L L + F + +HI R N ADA A
Sbjct: 462 LKVYGDSALVIRQLKGEWETRDSKLIPYQTHILRLAKYFDAISFHHIPREENQMADALAT 521
Query: 299 MG 300
+
Sbjct: 522 LA 523
>gi|359477856|ref|XP_003632035.1| PREDICTED: uncharacterized protein LOC100854167 [Vitis vinifera]
Length = 2300
Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV TNN+ EY A ILGL+ AL+
Sbjct: 1716 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPNYHPTTNNIVEYEACILGLETALEL 1773
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1774 GITQMDVLGDSNLVLRQVQGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1833
Query: 295 AQANMG 300
A A +
Sbjct: 1834 ALATLA 1839
>gi|32488016|emb|CAE02879.1| OSJNBb0022F23.16 [Oryza sativa Japonica Group]
Length = 550
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGV 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K + ++GDS+LV + +K +N L+ E ++L+++F ++ H+ R N E D
Sbjct: 59 KRLIMKGDSELVANHVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEPDEL 118
Query: 297 A 297
A
Sbjct: 119 A 119
>gi|242095770|ref|XP_002438375.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
gi|241916598|gb|EER89742.1| hypothetical protein SORBIDRAFT_10g015050 [Sorghum bicolor]
Length = 703
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKG 235
T+ FDG+ AGAG + + G R + A +NNV EY AL GLK A++ G
Sbjct: 243 TMYFDGSLMKT--GAGAGLLFISPLGVHMRYVIRIHFAASNNVMEYEALDNGLKIAIELG 300
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
+ + V+GDS+L+ Q+ ++ + CKE + +++KF ++ HI R N AD
Sbjct: 301 VRRLDVRGDSQLIIDQVMKASNCHDPKMEAYCKEVRRVEDKFHGLELVHIARRYNEAADE 360
Query: 296 QANMGI 301
A + +
Sbjct: 361 LAKIAL 366
>gi|356506842|ref|XP_003522184.1| PREDICTED: uncharacterized protein LOC100786848 [Glycine max]
Length = 2243
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1671 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1726
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1727 RIKNLDIYGDSALVIYQIKGEWETRHPGLIPYKDYARHLLTFFNKVELHHIPRDENQMAD 1786
Query: 295 AQANM 299
A A +
Sbjct: 1787 ALATL 1791
>gi|228984776|ref|ZP_04144948.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229155264|ref|ZP_04283375.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|423576587|ref|ZP_17552706.1| hypothetical protein II9_03808 [Bacillus cereus MSX-D12]
gi|423618166|ref|ZP_17594000.1| hypothetical protein IIO_03492 [Bacillus cereus VD115]
gi|228628189|gb|EEK84905.1| hypothetical protein bcere0010_14570 [Bacillus cereus ATCC 4342]
gi|228774974|gb|EEM23368.1| hypothetical protein bthur0001_14770 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|401207583|gb|EJR14362.1| hypothetical protein II9_03808 [Bacillus cereus MSX-D12]
gi|401253897|gb|EJR60133.1| hypothetical protein IIO_03492 [Bacillus cereus VD115]
Length = 128
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147767517|emb|CAN66714.1| hypothetical protein VITISV_041527 [Vitis vinifera]
Length = 2066
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV TNN+ EY A ILGL+ AL+
Sbjct: 1491 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPBYHPTTNNIVEYEACILGLETALEL 1548
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1549 GITQMDVLGDSNLVLRQVQGDWKTRDXKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1608
Query: 295 AQANMG 300
A A +
Sbjct: 1609 ALATLA 1614
>gi|242034263|ref|XP_002464526.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
gi|241918380|gb|EER91524.1| hypothetical protein SORBIDRAFT_01g020096 [Sorghum bicolor]
Length = 113
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 191 AGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 249
AGAG + + G R + A +NN AEY AL+ GLK A++ G + + V+GDS+LV
Sbjct: 1 AGAGLLFVSPLGVHMRYVIRIHFAESNNAAEYEALVNGLKIAIELGVRRLDVRGDSRLVI 60
Query: 250 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
Q+ ++ + CKE + L+ KF ++ HI R N AD A +
Sbjct: 61 DQVMKTSSCHDPKMEAYCKEVRRLEGKFHGLELVHIARRYNEAADELAKIA 111
>gi|147819107|emb|CAN75602.1| hypothetical protein VITISV_018938 [Vitis vinifera]
Length = 1588
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1050 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDAKLRPYHAYLELL 1109
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F+ + H+ R N ADA A +
Sbjct: 1110 VTRFEDLRYTHLPRAQNQFADALATLA 1136
>gi|359472600|ref|XP_003631172.1| PREDICTED: uncharacterized protein LOC100852915 [Vitis vinifera]
Length = 2212
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1623 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFTDRHPATNNIVEYEACILGLETALEL 1680
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1681 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1740
Query: 295 AQANMG 300
A A +
Sbjct: 1741 ALATLA 1746
>gi|356565827|ref|XP_003551138.1| PREDICTED: uncharacterized protein LOC100815866 [Glycine max]
Length = 1303
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKH 238
FDGAS N G GAVL + D +G TNN+AEY A LG++ A+ K
Sbjct: 1064 FDGAS--NALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVKL 1121
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++V GDS LV Q++G W+ + L L + F +HI R N ADA A
Sbjct: 1122 LKVYGDSALVIRQLKGEWETRDSKLIPYQTHILRLAKYFDDISFHHIPREENQMADALAT 1181
Query: 299 MG 300
+
Sbjct: 1182 LA 1183
>gi|147845704|emb|CAN79906.1| hypothetical protein VITISV_034933 [Vitis vinifera]
Length = 1882
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1694 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFTDRHPATNNIVEYEACILGLETALEL 1751
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1752 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1811
Query: 295 AQANMG 300
A A +
Sbjct: 1812 ALATLA 1817
>gi|356560472|ref|XP_003548516.1| PREDICTED: uncharacterized protein LOC100811554 [Glycine max]
Length = 1998
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1764 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1819
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1820 KIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1879
Query: 295 AQANM 299
A A +
Sbjct: 1880 ALATL 1884
>gi|348665811|gb|EGZ05640.1| hypothetical protein PHYSODRAFT_533596 [Phytophthora sojae]
Length = 367
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY AL+LG + A G +RV+GDS LV Q++G++ N L L + K
Sbjct: 7 TNNTAEYSALLLGSRAAADHGATSLRVEGDSTLVIQQVRGIFAARNAVLRRLRDQVKVEL 66
Query: 275 EKFQSFQINHILRNLNSEADAQANMGIYLK 304
+ SF ++H R N+ AD AN + L+
Sbjct: 67 ARVGSFSLHHNDRQANAHADRLANQALDLR 96
>gi|147781100|emb|CAN62911.1| hypothetical protein VITISV_036452 [Vitis vinifera]
Length = 2129
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1571 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1628
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1629 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVRRFDDLRYTHLPRAQNQFAD 1688
Query: 295 AQANMG 300
A A +
Sbjct: 1689 ALATLA 1694
>gi|77555161|gb|ABA97957.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1984
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 221 YRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF 280
Y AL+ GL+ A+ G K + V+GDS+LV Q+ W + N+ +E ++L++KF+
Sbjct: 1454 YEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGL 1513
Query: 281 QINHILRNLNSEADAQANMG 300
+++H+LR+ N AD AN G
Sbjct: 1514 ELSHVLRHNNEAADRLANFG 1533
>gi|77555756|gb|ABA98552.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 262
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDG N AGAG +L + G + + ATNN EY L+ G++ A G
Sbjct: 1 MAFDGTL--NSQGAGAGFILTSPSGDQFNHAIHLNFRATNNTVEYEGLLAGIRAAAALGA 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
K + V+GDS+LV Q+ +K +N LA E ++++ +F ++ H+ R N E D
Sbjct: 59 KRLIVKGDSELVANQVHKDYKCSNPELAKYLAEVRKMEHRFDGIEVRHVYRKDNVEPDNL 118
Query: 297 A 297
A
Sbjct: 119 A 119
>gi|50838954|gb|AAT81715.1| putative retrotransposon protein [Oryza sativa Japonica Group]
gi|108710483|gb|ABF98278.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 564
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ + FDGA N AGAG +L + G ++ + ATNN A+Y L+ G++ A
Sbjct: 83 TWIMAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAKYEGLLAGIRAAAA 140
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 141 LGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 200
Query: 294 DAQA 297
+ A
Sbjct: 201 NDLA 204
>gi|359475724|ref|XP_003631741.1| PREDICTED: uncharacterized protein LOC100260551 [Vitis vinifera]
Length = 1856
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV TNN+ EY A ILGL+ AL+
Sbjct: 1281 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPDYYPTTNNIVEYEACILGLETALEL 1338
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1339 GITQVDVLGDSNLVLRQVQGDWKTRDAKLKPCHAYLELLIEKFEELKYIHLPRAHNQFAD 1398
Query: 295 AQANMG 300
A A +
Sbjct: 1399 ALATLA 1404
>gi|108708301|gb|ABF96096.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 522
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQK 234
+ FDGA N AGAG +L + S+ + + + + ATNN AEY L+ G++ A
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSP--SIDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAAL 56
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N + D
Sbjct: 57 GVKRLIVKGDSELVANQVHKDYKCSNPELSKYLVEVRKLEKRFDGIEVRHVYRKDNIKPD 116
>gi|32488515|emb|CAE03267.1| OSJNBa0011J08.22 [Oryza sativa Japonica Group]
gi|38345859|emb|CAD41156.2| OSJNBa0064M23.1 [Oryza sativa Japonica Group]
Length = 586
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGV 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E D
Sbjct: 59 RRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEPD 116
>gi|147803555|emb|CAN68715.1| hypothetical protein VITISV_004899 [Vitis vinifera]
Length = 2452
Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 996 FDGAA--NHSGCGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1053
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1054 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1113
Query: 295 AQANMG 300
A A +
Sbjct: 1114 ALATLA 1119
>gi|147770667|emb|CAN69026.1| hypothetical protein VITISV_041027 [Vitis vinifera]
Length = 888
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 160 ADSCLNTQSVPYNCY-SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR--LREGVGIATN 216
+D L+ + N + S + FDG ++ + G VL Y +RE +N
Sbjct: 485 SDDFLDEEIFYVNFFPSWMMFFDGLARFDGTGVGVVFVLPQRQILPYSFVIRER---CSN 541
Query: 217 NVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK 276
NV EY+ALI+GL+ A++ + + GDSKL Q+ L+++ + NL + A +L EK
Sbjct: 542 NVVEYQALIIGLQMAIEMKITSLEICGDSKLEINQLLALYEVKSDNLVPHFQYATQLMEK 601
Query: 277 FQSFQINHILRNLNSEADAQANMG---IYLKDGQVEAECS 313
F+ + HI N DA AN+ LKD V S
Sbjct: 602 FERISLVHIPPKENQMVDALANLAASLTMLKDETVHVPLS 641
>gi|402552936|ref|YP_006594207.1| ribonuclease H [Bacillus cereus FRI-35]
gi|401794146|gb|AFQ08005.1| ribonuclease H [Bacillus cereus FRI-35]
Length = 128
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCMEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALHYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147828215|emb|CAN77782.1| hypothetical protein VITISV_018671 [Vitis vinifera]
Length = 1996
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 48/87 (55%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1521 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELL 1580
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F+ + H+ R N ADA A +
Sbjct: 1581 VARFEDLRYTHLPRXQNQFADALATLA 1607
>gi|356502987|ref|XP_003520295.1| PREDICTED: uncharacterized protein LOC100793173 [Glycine max]
Length = 1150
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FD AS N G GAVL + D +G TNN+AEY A L ++ A+
Sbjct: 1021 TVWFDVAS--NILGHGVGAVLISPDNQCVPFTARLGFDCTNNMAEYEACALAVQAAIDSN 1078
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ + L KEL + F +H+ R N ADA
Sbjct: 1079 VKLLKVYGDSALVIHQLRGEWETRDPKLIPYKAYIKELAKTFDEISFHHVPREENQMADA 1138
Query: 296 QANMG 300
A +
Sbjct: 1139 LATLA 1143
>gi|147790735|emb|CAN59929.1| hypothetical protein VITISV_023498 [Vitis vinifera]
Length = 1839
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV TNN+ EY A ILGL+ AL+
Sbjct: 1481 FDGAA--NHSGYGIGVLLVSPQGDHIPRSVRLTFPBYYPTTNNIVEYEACILGLETALEL 1538
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV Q+QG WK + L + L EKF+ + H+ R N AD
Sbjct: 1539 GITQMDVLGDSNLVLRQVQGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQFAD 1598
Query: 295 AQANMG 300
A A +
Sbjct: 1599 ALATLA 1604
>gi|222622736|gb|EEE56868.1| hypothetical protein OsJ_06501 [Oryza sativa Japonica Group]
Length = 124
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++ A G
Sbjct: 1 MAFDGAL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAATLGV 58
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E D
Sbjct: 59 RRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEPD 116
>gi|147832775|emb|CAN65896.1| hypothetical protein VITISV_027695 [Vitis vinifera]
Length = 2204
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1644 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1701
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS +V QIQG WK + L + L +F+ + H+ R N AD
Sbjct: 1702 GIRQMEVFGDSNMVLRQIQGEWKTRDVKLRPYHAYLELLVARFEDLRYTHLPRAQNQFAD 1761
Query: 295 AQANM 299
A A +
Sbjct: 1762 ALATL 1766
>gi|18312884|ref|NP_559551.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
gi|18160375|gb|AAL63733.1| hypothetical protein PAE1792 [Pyrobaculum aerophilum str. IM2]
Length = 191
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 178 LEFDGASKG-NPGQAGAGAVLRAEDGSVYRLREGVG----------IATNNVAEYRALIL 226
L FDGA + NPG GA ++G RE G TNN AEY L+
Sbjct: 6 LFFDGACEPVNPGGIGAYGFAAFDEG-----REAYGEGGVVCFGERWCTNNYAEYAGLVK 60
Query: 227 GLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHIL 286
L++AL G+ + GDS+LV Q+ GL+ + NL L + A EL F+ F I+ +
Sbjct: 61 ALEWALAGGFDCVSAFGDSQLVVRQMLGLYAVRAPNLKPLHERALELSRGFRRFSISWVP 120
Query: 287 RNLNSEAD 294
R NS AD
Sbjct: 121 REENSRAD 128
>gi|242084264|ref|XP_002442557.1| hypothetical protein SORBIDRAFT_08g021885 [Sorghum bicolor]
gi|241943250|gb|EES16395.1| hypothetical protein SORBIDRAFT_08g021885 [Sorghum bicolor]
Length = 528
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 195 AVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 254
A++ +D Y LR + A+NNVAEY A + G++ A++ G K + V GDS LV Q+
Sbjct: 177 AIVANKDKLRYVLR-ILFPASNNVAEYEACLHGIRLAVELGVKRLYVYGDSALVINQLNK 235
Query: 255 LWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
W N++ + CKE ++ + F + H++R+ N DA + +G
Sbjct: 236 EWDANHEKMDLYCKEIRKWETNFYGIEYIHVVRDKNQAGDALSKLG 281
>gi|242039467|ref|XP_002467128.1| hypothetical protein SORBIDRAFT_01g020093 [Sorghum bicolor]
gi|241920982|gb|EER94126.1| hypothetical protein SORBIDRAFT_01g020093 [Sorghum bicolor]
Length = 114
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 191 AGAGAVLRA--EDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 248
AGAG + + +D Y LR + A+NNV EY A + G++ A++ G K + V GDS LV
Sbjct: 1 AGAGILFVSPNKDKLRYVLRILLP-ASNNVTEYEACLHGIRLAIELGVKRLYVYGDSALV 59
Query: 249 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYL 303
Q+ W ++ + CKE ++ + F + H++R+ N ADA +N ++L
Sbjct: 60 INQLNKEWDATHEKMDLYCKEIRKWETNFYGIEYVHVVRDKNQAADAMSNSALFL 114
>gi|124359822|gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1146
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
L FDGA N G GAV+ + G + TNN+AEY A I G++ A+
Sbjct: 591 LVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 648
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
KH+ + GDS LV QI+G W+ ++ L A+ L F +++HI R+ N ADA
Sbjct: 649 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 708
Query: 297 ANM 299
A +
Sbjct: 709 ATL 711
>gi|356551859|ref|XP_003544290.1| PREDICTED: uncharacterized protein LOC100815788 [Glycine max]
Length = 2270
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1698 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1753
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1754 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1813
Query: 295 AQANM 299
A A +
Sbjct: 1814 ALATL 1818
>gi|356570299|ref|XP_003553327.1| PREDICTED: uncharacterized protein LOC100814838 [Glycine max]
Length = 2284
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A ILG++ A+
Sbjct: 1712 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACILGIEKAIDL 1767
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1768 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1827
Query: 295 AQANM 299
A A +
Sbjct: 1828 ALATL 1832
>gi|398304161|ref|ZP_10507747.1| ribonuclease H [Bacillus vallismortis DV1-F-3]
Length = 132
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+RALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GQAESFSIPIGMHTNQEAEFRALIEGMKLCAKRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERAAE-LEMVKNKMFHPYVEEIIRLKAAFPLFFIKWIPGKQNQKADQLAKEA 125
Query: 301 IYLKD 305
I L D
Sbjct: 126 IRLND 130
>gi|147790268|emb|CAN74495.1| hypothetical protein VITISV_026191 [Vitis vinifera]
Length = 2172
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1624 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1681
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + + L +F+ + H+ R N AD
Sbjct: 1682 GIRQMEVFGDSNLVLRQIQGEWKTRDVKFRPYQSYLELLVARFEDLKYTHLPRAQNQFAD 1741
Query: 295 AQANMG 300
A A +
Sbjct: 1742 ALATLA 1747
>gi|133751141|gb|ABO37966.1| putative pol protein [Vitis vinifera]
Length = 169
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + ++V GDS +V QIQG WK + L + L
Sbjct: 18 ATNNIIEYEACILGLETALELGIRQMKVFGDSNMVLRQIQGEWKTRDVKLRPYHAYLELL 77
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 78 VGRFDDLRYTHLPRAQNQFADALATLA 104
>gi|38344129|emb|CAD39841.2| OSJNBb0072N21.8 [Oryza sativa Japonica Group]
Length = 1790
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + ++ + ATNN AEY L+ G++
Sbjct: 1375 TWTMAFDGAL--NSQGAGAGFILTSPSRDQFKHAIHLNFRATNNTAEYEGLLAGIRATAA 1432
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1433 LGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1492
Query: 294 D 294
D
Sbjct: 1493 D 1493
>gi|406929765|gb|EKD65276.1| hypothetical protein ACD_50C00143G0011 [uncultured bacterium]
Length = 142
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQ-----K 234
DG ++GNPG++ G + E G+ V L + +GIATNNVAEY ++ L + ++ +
Sbjct: 11 DGGARGNPGESAVGVYIVDEKGNQVAALGKKIGIATNNVAEYMGVLEALSFIIENKKSLE 70
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI--NHILRNLNSE 292
+ I DS LVC QI+G +K+ + L L + ++ KE+ + I +HI R N +
Sbjct: 71 EIERINFFLDSNLVCSQIRGFFKVKDAKLRDLLFKVRQ-KEQEINLPIYYSHIPREKNKK 129
Query: 293 ADAQANMGI 301
AD N +
Sbjct: 130 ADFLVNQAL 138
>gi|359484844|ref|XP_003633174.1| PREDICTED: uncharacterized protein LOC100855346 [Vitis vinifera]
Length = 1966
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1353 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1410
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1411 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1470
Query: 295 AQANMG 300
A A +
Sbjct: 1471 ALATLA 1476
>gi|359474418|ref|XP_003631459.1| PREDICTED: uncharacterized protein LOC100853395 [Vitis vinifera]
Length = 2434
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1791 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1848
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1849 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1908
Query: 295 AQANMG 300
A A +
Sbjct: 1909 ALATLA 1914
>gi|147852267|emb|CAN80129.1| hypothetical protein VITISV_018340 [Vitis vinifera]
Length = 2285
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1732 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1789
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1790 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1849
Query: 295 AQANMG 300
A A +
Sbjct: 1850 ALATLA 1855
>gi|147843786|emb|CAN79456.1| hypothetical protein VITISV_004376 [Vitis vinifera]
Length = 2080
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1543 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1600
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1601 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1660
Query: 295 AQANMG 300
A A +
Sbjct: 1661 ALATLA 1666
>gi|147781249|emb|CAN74038.1| hypothetical protein VITISV_028523 [Vitis vinifera]
Length = 2317
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1742 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1799
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1800 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1859
Query: 295 AQANMG 300
A A +
Sbjct: 1860 ALATLA 1865
>gi|359485628|ref|XP_003633300.1| PREDICTED: uncharacterized protein LOC100854777 [Vitis vinifera]
Length = 2323
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1727 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1784
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1785 GIRQMEVFGDSSLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1844
Query: 295 AQANMG 300
A A +
Sbjct: 1845 ALATLA 1850
>gi|251797095|ref|YP_003011826.1| ribonuclease H [Paenibacillus sp. JDR-2]
gi|247544721|gb|ACT01740.1| ribonuclease H [Paenibacillus sp. JDR-2]
Length = 128
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +GAG ++ G V R +G+ N+ AE+R L L+ ++K YK +
Sbjct: 7 DGASAGNPGPSGAGIFIK-NHGEVERYSIPLGVMDNHEAEFRTFTLALELCIRKEYKTVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+ V ++ + + N+ A L EA +L ++F+ F + I + N AD +
Sbjct: 66 FRTDSQFVNRAVE-IEFVKNKKFAPLLLEALKLTKQFELFFMMWIPSSENKSADQLSRAA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|301053232|ref|YP_003791443.1| ribonuclease H [Bacillus cereus biovar anthracis str. CI]
gi|300375401|gb|ADK04305.1| ribonuclease H [Bacillus cereus biovar anthracis str. CI]
Length = 128
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLTALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147775414|emb|CAN64945.1| hypothetical protein VITISV_019048 [Vitis vinifera]
Length = 1929
Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 48/88 (54%)
Query: 213 IATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE 272
+ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L
Sbjct: 1450 LATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDGKLRPYHAYLAL 1509
Query: 273 LKEKFQSFQINHILRNLNSEADAQANMG 300
L +F+ + H+ R N ADA A +
Sbjct: 1510 LVARFEDLRYTHLPRVRNQFADALATLA 1537
>gi|42780788|ref|NP_978035.1| ribonuclease H [Bacillus cereus ATCC 10987]
gi|42736708|gb|AAS40643.1| RNase H [Bacillus cereus ATCC 10987]
Length = 128
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSFPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147800365|emb|CAN62141.1| hypothetical protein VITISV_038647 [Vitis vinifera]
Length = 2068
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV+ ATNN+ EY A ILGL+ AL+
Sbjct: 1526 FDGAA--NHSGYGIGVLLISPHGDQIPRSVHLAFSDRHPATNNIVEYEACILGLETALEL 1583
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1584 GIRQMEAFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1643
Query: 295 AQANMG 300
A A +
Sbjct: 1644 ALATLA 1649
>gi|229016980|ref|ZP_04173900.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
gi|229023161|ref|ZP_04179672.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|423392005|ref|ZP_17369231.1| hypothetical protein ICG_03853 [Bacillus cereus BAG1X1-3]
gi|228738086|gb|EEL88571.1| hypothetical protein bcere0029_15030 [Bacillus cereus AH1272]
gi|228744251|gb|EEL94333.1| hypothetical protein bcere0030_15450 [Bacillus cereus AH1273]
gi|401637838|gb|EJS55591.1| hypothetical protein ICG_03853 [Bacillus cereus BAG1X1-3]
Length = 128
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V+ L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAVH-LSLPLGTMSNHEAEYHALLAALKYCTEHDYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|423610110|ref|ZP_17585971.1| hypothetical protein IIM_00825 [Bacillus cereus VD107]
gi|401249427|gb|EJR55733.1| hypothetical protein IIM_00825 [Bacillus cereus VD107]
Length = 128
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY ++ Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGIQPPV-QLSLPLGTMSNHEAEYHALLAALKYCVKHNYSIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|407003987|gb|EKE20472.1| ribonuclease H [uncultured bacterium]
Length = 143
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK--YALQKGYK- 237
DG S+GNPG AG G ++ D + E +GI TNN AEY ALI GLK AL K
Sbjct: 10 DGGSRGNPGPAGIGVWIKTLDK---KYGECIGIKTNNDAEYEALIFGLKKVKALLGKTKA 66
Query: 238 ---HIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
I DS+L+ Q+ +K+ + + E L F+ + NH++R N AD
Sbjct: 67 KQFEIECYADSELMVKQLNHEYKLKEERIQKYFIEIWNLMLDFKEVKFNHVMREKNKVAD 126
Query: 295 AQANMGI 301
N +
Sbjct: 127 EMVNAAL 133
>gi|218246174|ref|YP_002371545.1| hypothetical protein PCC8801_1325 [Cyanothece sp. PCC 8801]
gi|257059223|ref|YP_003137111.1| ribonuclease HI-like protein [Cyanothece sp. PCC 8802]
gi|218166652|gb|ACK65389.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
gi|256589389|gb|ACV00276.1| Ribonuclease HI-like protein [Cyanothece sp. PCC 8802]
Length = 417
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
FDG S+G + A AVL DG Y + + V +++ AEY LI+GLK A + G +
Sbjct: 20 FDGESQGKSEEGAAAAVLLISDGRKYAVSQLVSCESDDEAEYMGLIIGLKKAQKLGMTSL 79
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
+++GDS++V Q+ GL + L L ++ +L + F+ + I
Sbjct: 80 KIKGDSEVVFNQVNGLKPVREDRLIRLYRKVIKLMQGFERISLEWI 125
>gi|147793981|emb|CAN77844.1| hypothetical protein VITISV_028932 [Vitis vinifera]
Length = 1928
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1500 FDGAA--NHSGYGLGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1557
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1558 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1617
Query: 295 AQANMG 300
A A +
Sbjct: 1618 ALATLA 1623
>gi|29788812|gb|AAP03358.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1778
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ F GA N AGAG +L + G ++ + ATN AEY L+ G++ A
Sbjct: 1236 TWTMAFVGAL--NSQGAGAGFILTSPLGDQFKHAIYLNFRATNKTAEYEGLLAGIRVAAA 1293
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1294 LGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1353
Query: 294 D 294
D
Sbjct: 1354 D 1354
>gi|31415903|gb|AAP50924.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1799
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ F GA N AGAG +L + G ++ + ATN AEY L+ G++ A
Sbjct: 1257 TWTMAFVGAL--NSQGAGAGFILTSPLGDQFKHAIYLNFRATNKTAEYEGLLAGIRVAAA 1314
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 1315 LGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 1374
Query: 294 D 294
D
Sbjct: 1375 D 1375
>gi|147863985|emb|CAN80489.1| hypothetical protein VITISV_039325 [Vitis vinifera]
Length = 2093
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGS-VYRLREGV----GIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G + RL V + TNN+ EY A ILGL+ AL+
Sbjct: 1518 FDGAA--NQLGFGIGVLLISPQGDHIPRLVRLVFSNRHLTTNNIVEYEACILGLETALEL 1575
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1576 GIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1635
Query: 295 AQANMG 300
A A +
Sbjct: 1636 ALATLA 1641
>gi|356551733|ref|XP_003544228.1| PREDICTED: uncharacterized protein LOC100816508 [Glycine max]
Length = 2311
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A +LG++ A+
Sbjct: 1739 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNMAEYEACVLGIEKAIDL 1794
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1795 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1854
Query: 295 AQANM 299
A A +
Sbjct: 1855 ALATL 1859
>gi|147836100|emb|CAN62090.1| hypothetical protein VITISV_013805 [Vitis vinifera]
Length = 2463
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1416 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLXPYHAYLELL 1475
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1476 VXRFXDLRYTHLPRAQNQFADALATLA 1502
>gi|30261693|ref|NP_844070.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47526908|ref|YP_018257.1| ribonuclease H [Bacillus anthracis str. 'Ames Ancestor']
gi|49184522|ref|YP_027774.1| ribonuclease H [Bacillus anthracis str. Sterne]
gi|49477289|ref|YP_035811.1| ribonuclease H [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143763|ref|YP_083064.1| ribonuclease H [Bacillus cereus E33L]
gi|65318963|ref|ZP_00391922.1| COG0328: Ribonuclease HI [Bacillus anthracis str. A2012]
gi|118477133|ref|YP_894284.1| ribonuclease H [Bacillus thuringiensis str. Al Hakam]
gi|165869270|ref|ZP_02213929.1| RNase H [Bacillus anthracis str. A0488]
gi|167633323|ref|ZP_02391648.1| RNase H [Bacillus anthracis str. A0442]
gi|167639074|ref|ZP_02397347.1| RNase H [Bacillus anthracis str. A0193]
gi|170686199|ref|ZP_02877421.1| RNase H [Bacillus anthracis str. A0465]
gi|170706468|ref|ZP_02896928.1| RNase H [Bacillus anthracis str. A0389]
gi|177650395|ref|ZP_02933362.1| RNase H [Bacillus anthracis str. A0174]
gi|190566405|ref|ZP_03019323.1| RNase H [Bacillus anthracis str. Tsiankovskii-I]
gi|196033486|ref|ZP_03100898.1| RNase H [Bacillus cereus W]
gi|196046566|ref|ZP_03113790.1| RNase H [Bacillus cereus 03BB108]
gi|206974875|ref|ZP_03235790.1| RNase H [Bacillus cereus H3081.97]
gi|217959173|ref|YP_002337721.1| ribonuclease H [Bacillus cereus AH187]
gi|218902808|ref|YP_002450642.1| ribonuclease H [Bacillus cereus AH820]
gi|222095315|ref|YP_002529375.1| ribonuclease h [Bacillus cereus Q1]
gi|225863552|ref|YP_002748930.1| RNase H [Bacillus cereus 03BB102]
gi|227815554|ref|YP_002815563.1| ribonuclease H [Bacillus anthracis str. CDC 684]
gi|228907332|ref|ZP_04071190.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|228914272|ref|ZP_04077887.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926728|ref|ZP_04089796.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932978|ref|ZP_04095841.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945296|ref|ZP_04107651.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229029371|ref|ZP_04185456.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|229090653|ref|ZP_04221886.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|229121245|ref|ZP_04250476.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|229132508|ref|ZP_04261358.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|229138389|ref|ZP_04266980.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|229172337|ref|ZP_04299897.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|229183884|ref|ZP_04311100.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|229195904|ref|ZP_04322658.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|229601488|ref|YP_002866097.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|254683182|ref|ZP_05147043.1| ribonuclease H [Bacillus anthracis str. CNEVA-9066]
gi|254723771|ref|ZP_05185557.1| ribonuclease H [Bacillus anthracis str. A1055]
gi|254734534|ref|ZP_05192246.1| ribonuclease H [Bacillus anthracis str. Western North America
USA6153]
gi|254740943|ref|ZP_05198631.1| ribonuclease H [Bacillus anthracis str. Kruger B]
gi|254755185|ref|ZP_05207219.1| ribonuclease H [Bacillus anthracis str. Vollum]
gi|254759721|ref|ZP_05211745.1| ribonuclease H [Bacillus anthracis str. Australia 94]
gi|300117384|ref|ZP_07055174.1| ribonuclease H [Bacillus cereus SJ1]
gi|375283670|ref|YP_005104108.1| RNase H [Bacillus cereus NC7401]
gi|376265531|ref|YP_005118243.1| RNase H [Bacillus cereus F837/76]
gi|384179629|ref|YP_005565391.1| ribonuclease H [Bacillus thuringiensis serovar finitimus YBT-020]
gi|386735402|ref|YP_006208583.1| RNase HI [Bacillus anthracis str. H9401]
gi|421508353|ref|ZP_15955267.1| ribonuclease H [Bacillus anthracis str. UR-1]
gi|421638703|ref|ZP_16079298.1| ribonuclease H [Bacillus anthracis str. BF1]
gi|423353827|ref|ZP_17331453.1| hypothetical protein IAU_01902 [Bacillus cereus IS075]
gi|423371669|ref|ZP_17349009.1| hypothetical protein IC5_00725 [Bacillus cereus AND1407]
gi|423403791|ref|ZP_17380964.1| hypothetical protein ICW_04189 [Bacillus cereus BAG2X1-2]
gi|423420364|ref|ZP_17397453.1| hypothetical protein IE3_03836 [Bacillus cereus BAG3X2-1]
gi|423460434|ref|ZP_17437231.1| hypothetical protein IEI_03574 [Bacillus cereus BAG5X2-1]
gi|423475579|ref|ZP_17452294.1| hypothetical protein IEO_01037 [Bacillus cereus BAG6X1-1]
gi|423552569|ref|ZP_17528896.1| hypothetical protein IGW_03200 [Bacillus cereus ISP3191]
gi|423569393|ref|ZP_17545639.1| hypothetical protein II7_02615 [Bacillus cereus MSX-A12]
gi|423606583|ref|ZP_17582476.1| hypothetical protein IIK_03164 [Bacillus cereus VD102]
gi|30255921|gb|AAP25556.1| ribonuclease H [Bacillus anthracis str. Ames]
gi|47502056|gb|AAT30732.1| RNase H [Bacillus anthracis str. 'Ames Ancestor']
gi|49178449|gb|AAT53825.1| RNase H [Bacillus anthracis str. Sterne]
gi|49328845|gb|AAT59491.1| ribonuclease HI [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51977232|gb|AAU18782.1| ribonuclease HI [Bacillus cereus E33L]
gi|118416358|gb|ABK84777.1| RNase HI [Bacillus thuringiensis str. Al Hakam]
gi|164714710|gb|EDR20228.1| RNase H [Bacillus anthracis str. A0488]
gi|167512864|gb|EDR88237.1| RNase H [Bacillus anthracis str. A0193]
gi|167531361|gb|EDR94039.1| RNase H [Bacillus anthracis str. A0442]
gi|170128566|gb|EDS97433.1| RNase H [Bacillus anthracis str. A0389]
gi|170669896|gb|EDT20637.1| RNase H [Bacillus anthracis str. A0465]
gi|172083539|gb|EDT68599.1| RNase H [Bacillus anthracis str. A0174]
gi|190562540|gb|EDV16507.1| RNase H [Bacillus anthracis str. Tsiankovskii-I]
gi|195993920|gb|EDX57876.1| RNase H [Bacillus cereus W]
gi|196022499|gb|EDX61182.1| RNase H [Bacillus cereus 03BB108]
gi|206746894|gb|EDZ58286.1| RNase H [Bacillus cereus H3081.97]
gi|217065502|gb|ACJ79752.1| RNase H [Bacillus cereus AH187]
gi|218537064|gb|ACK89462.1| RNase H [Bacillus cereus AH820]
gi|221239373|gb|ACM12083.1| ribonuclease HI [Bacillus cereus Q1]
gi|225787336|gb|ACO27553.1| ribonuclease H [Bacillus cereus 03BB102]
gi|227006694|gb|ACP16437.1| ribonuclease H [Bacillus anthracis str. CDC 684]
gi|228587546|gb|EEK45610.1| hypothetical protein bcere0001_14660 [Bacillus cereus m1293]
gi|228599536|gb|EEK57140.1| hypothetical protein bcere0004_14510 [Bacillus cereus BGSC 6E1]
gi|228611133|gb|EEK68395.1| hypothetical protein bcere0006_14480 [Bacillus cereus MM3]
gi|228645060|gb|EEL01301.1| hypothetical protein bcere0013_15080 [Bacillus cereus BDRD-ST26]
gi|228650945|gb|EEL06930.1| hypothetical protein bcere0014_14410 [Bacillus cereus BDRD-ST196]
gi|228662090|gb|EEL17699.1| hypothetical protein bcere0016_15510 [Bacillus cereus 95/8201]
gi|228692595|gb|EEL46321.1| hypothetical protein bcere0021_14770 [Bacillus cereus Rock3-42]
gi|228731931|gb|EEL82828.1| hypothetical protein bcere0028_14620 [Bacillus cereus AH1271]
gi|228814268|gb|EEM60534.1| hypothetical protein bthur0007_14590 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826579|gb|EEM72350.1| hypothetical protein bthur0009_14490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832841|gb|EEM78410.1| hypothetical protein bthur0010_14440 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845266|gb|EEM90302.1| hypothetical protein bthur0012_15040 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228852193|gb|EEM96989.1| hypothetical protein bthur0013_14990 [Bacillus thuringiensis IBL
200]
gi|229265896|gb|ACQ47533.1| ribonuclease H [Bacillus anthracis str. A0248]
gi|298725219|gb|EFI65871.1| ribonuclease H [Bacillus cereus SJ1]
gi|324325713|gb|ADY20973.1| ribonuclease H [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358352196|dbj|BAL17368.1| RNase H [Bacillus cereus NC7401]
gi|364511331|gb|AEW54730.1| RNase H [Bacillus cereus F837/76]
gi|384385254|gb|AFH82915.1| RNase HI [Bacillus anthracis str. H9401]
gi|401088509|gb|EJP96695.1| hypothetical protein IAU_01902 [Bacillus cereus IS075]
gi|401100753|gb|EJQ08746.1| hypothetical protein IC5_00725 [Bacillus cereus AND1407]
gi|401102273|gb|EJQ10260.1| hypothetical protein IE3_03836 [Bacillus cereus BAG3X2-1]
gi|401140487|gb|EJQ48043.1| hypothetical protein IEI_03574 [Bacillus cereus BAG5X2-1]
gi|401186511|gb|EJQ93599.1| hypothetical protein IGW_03200 [Bacillus cereus ISP3191]
gi|401206736|gb|EJR13522.1| hypothetical protein II7_02615 [Bacillus cereus MSX-A12]
gi|401242139|gb|EJR48517.1| hypothetical protein IIK_03164 [Bacillus cereus VD102]
gi|401647935|gb|EJS65538.1| hypothetical protein ICW_04189 [Bacillus cereus BAG2X1-2]
gi|401821603|gb|EJT20759.1| ribonuclease H [Bacillus anthracis str. UR-1]
gi|402435449|gb|EJV67483.1| hypothetical protein IEO_01037 [Bacillus cereus BAG6X1-1]
gi|403394230|gb|EJY91471.1| ribonuclease H [Bacillus anthracis str. BF1]
Length = 128
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147773530|emb|CAN63008.1| hypothetical protein VITISV_003744 [Vitis vinifera]
Length = 1878
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 45/82 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGLK AL+ G + V GDS LV QIQG WK + L + L
Sbjct: 1340 ATNNIVEYEACILGLKTALELGIGQMEVFGDSNLVFRQIQGEWKTRDAKLRPYHAYLELL 1399
Query: 274 KEKFQSFQINHILRNLNSEADA 295
KF+ + H+ R N ADA
Sbjct: 1400 VAKFKDLRYTHLPRAQNQFADA 1421
>gi|356523173|ref|XP_003530216.1| PREDICTED: uncharacterized protein LOC100814220 [Glycine max]
Length = 2280
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 178 LEFDGASK--GNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQK 234
L FDGA GN G GAV+ +G+ + TNN+AEY A +LG++ A+
Sbjct: 1708 LIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFNCTNNMAEYEACVLGIEKAIDL 1763
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K++ + GDS LV QI+G W+ + L A+ L F +++HI R+ N AD
Sbjct: 1764 RIKNLDIYGDSALVINQIKGEWETRHPGLIPYKDYARRLLTFFNKVELHHIPRDENQMAD 1823
Query: 295 AQANM 299
A A +
Sbjct: 1824 ALATL 1828
>gi|224145298|ref|XP_002325594.1| predicted protein [Populus trichocarpa]
gi|222862469|gb|EEE99975.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKH 238
FDGA N GAGAV+ + D Y + + TNN AEY A ILGL+ AL+ K
Sbjct: 3 FDGAV--NVYGNGAGAVIISPDKKQYPVSVKLHFECTNNTAEYEACILGLEAALELKIKK 60
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ V GDS L+ Q++G W+ L + L ++F+ + H+ R N ADA A
Sbjct: 61 LDVYGDSMLIICQVKGEWQTKEGKLRPFQEYLSTLAKEFEEIRFTHLGREGNHFADALAT 120
Query: 299 MG 300
+
Sbjct: 121 LA 122
>gi|242044120|ref|XP_002459931.1| hypothetical protein SORBIDRAFT_02g017020 [Sorghum bicolor]
gi|241923308|gb|EER96452.1| hypothetical protein SORBIDRAFT_02g017020 [Sorghum bicolor]
Length = 802
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A+NNVAEY A + G++ A++ G K + V GDS LV Q+ W ++ + CKE ++
Sbjct: 321 ASNNVAEYEACLHGIRLAVELGVKRLYVYGDSALVVNQLNKEWDATHEKMDLYCKEIRKW 380
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+ F + H++R+ N ADA + +G
Sbjct: 381 ETNFYGIEYIHVVRDKNQAADALSKLG 407
>gi|14091854|gb|AAK53857.1|AC016781_11 Putative retroelement [Oryza sativa Japonica Group]
gi|108709345|gb|ABF97140.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1541
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 944 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1000
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + +RV GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1001 LRVAAGLGIRRLRVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1060
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1061 RDNAVAD 1067
>gi|147775045|emb|CAN59913.1| hypothetical protein VITISV_030726 [Vitis vinifera]
Length = 1957
Score = 65.5 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1453 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLXQIQGEWKTRDVKLKPYHAYLELL 1512
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1513 VGRFDDLRYTHLPRAQNQFADALATLA 1539
>gi|228920407|ref|ZP_04083752.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423579890|ref|ZP_17556001.1| hypothetical protein IIA_01405 [Bacillus cereus VD014]
gi|423637652|ref|ZP_17613305.1| hypothetical protein IK7_04061 [Bacillus cereus VD156]
gi|228839037|gb|EEM84333.1| hypothetical protein bthur0011_14210 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401217345|gb|EJR24039.1| hypothetical protein IIA_01405 [Bacillus cereus VD014]
gi|401273595|gb|EJR79580.1| hypothetical protein IK7_04061 [Bacillus cereus VD156]
Length = 128
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|78043013|ref|YP_359703.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
gi|77995128|gb|ABB14027.1| ribonuclease HI [Carboxydothermus hydrogenoformans Z-2901]
Length = 148
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRAL---ILGLKYALQ 233
+ DG S+GNPG A + V+ E+G V Y + +GI TNNVAE+ AL L L + Q
Sbjct: 5 VHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALTFLAQ 64
Query: 234 K-GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNS 291
K G + DS+L+ Q G +K+ ++ L + E K+L ++H+ R N
Sbjct: 65 KHGKVEAEIFADSELMVKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYRENNK 124
Query: 292 EADAQANM 299
AD N+
Sbjct: 125 AADRLVNL 132
>gi|147791936|emb|CAN72441.1| hypothetical protein VITISV_032854 [Vitis vinifera]
Length = 2089
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1627 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELL 1686
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1687 VGRFDDLRYTHLPRAQNQFADALATLA 1713
>gi|51038039|gb|AAT93843.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1723
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 131 WNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCYSC-TLEFDGA-SKGNP 188
W TQ V E ++A S + N + L + PY+ + +E + S N
Sbjct: 1088 W-TQEVEEAFIALKLYLSNPLVLVAPQPNEELFLYIVATPYSMSTVIVVEREKVQSALNS 1146
Query: 189 GQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 247
AGAG +L + G ++ + ATNN AEY L+ G++ + G K + V+GDS+L
Sbjct: 1147 QGAGAGFILTSPSGDQFKRAIHLNFRATNNTAEYEGLLAGIRATVALGVKRLIVKGDSEL 1206
Query: 248 VCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
V Q+ +K ++ L+ E ++L+++F ++ H+ R + E D
Sbjct: 1207 VANQVHKDYKCSSPKLSNYLAEVRKLEKRFDGIEVRHVYRKDDIEPD 1253
>gi|147767190|emb|CAN62666.1| hypothetical protein VITISV_040012 [Vitis vinifera]
Length = 984
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKYAL 232
FDGA+ N G G +L + G + VG+A TNN+ EY A ILGL+ A
Sbjct: 627 FDGAT--NHSGYGIGFLLISPHGD--HIPRSVGLAFLDRHLTTNNIVEYEACILGLETAH 682
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + I V GDS ++ QIQG WK + L + L +F + H+ R N
Sbjct: 683 ELGIRQIEVFGDSNMILRQIQGEWKTRDVKLRLYHAYLELLVGRFDDLRYMHLPRVQNQF 742
Query: 293 ADAQANM 299
ADA A +
Sbjct: 743 ADALATL 749
>gi|89179457|gb|ABD63192.1| Reverse transcriptase family protein [Asparagus officinalis]
Length = 1146
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
+NNVAEY AL++GL +A + G +++ GDS+L+ Q++G +++ NQ+L +EA ++
Sbjct: 1009 SNNVAEYNALLIGLSFAKELGVEYLEAFGDSQLIVNQVRGEYEVRNQDLIPYHQEAIKMA 1068
Query: 275 EKFQSFQINHILRNLNSEAD 294
+ F+ F I +I R N+ D
Sbjct: 1069 DSFEEFFIEYIPRLQNTYTD 1088
>gi|229096181|ref|ZP_04227154.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
gi|229102292|ref|ZP_04233001.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|229115136|ref|ZP_04244546.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|407704078|ref|YP_006827663.1| glyoxalase/bleomycin resistance protein/dioxygenase [Bacillus
thuringiensis MC28]
gi|423380506|ref|ZP_17357790.1| hypothetical protein IC9_03859 [Bacillus cereus BAG1O-2]
gi|423443538|ref|ZP_17420444.1| hypothetical protein IEA_03868 [Bacillus cereus BAG4X2-1]
gi|423446210|ref|ZP_17423089.1| hypothetical protein IEC_00818 [Bacillus cereus BAG5O-1]
gi|423466629|ref|ZP_17443397.1| hypothetical protein IEK_03816 [Bacillus cereus BAG6O-1]
gi|423536026|ref|ZP_17512444.1| hypothetical protein IGI_03858 [Bacillus cereus HuB2-9]
gi|423538729|ref|ZP_17515120.1| hypothetical protein IGK_00821 [Bacillus cereus HuB4-10]
gi|423544966|ref|ZP_17521324.1| hypothetical protein IGO_01401 [Bacillus cereus HuB5-5]
gi|423625326|ref|ZP_17601104.1| hypothetical protein IK3_03924 [Bacillus cereus VD148]
gi|228668276|gb|EEL23708.1| hypothetical protein bcere0017_14310 [Bacillus cereus Rock1-3]
gi|228681193|gb|EEL35361.1| hypothetical protein bcere0019_14530 [Bacillus cereus Rock3-28]
gi|228687141|gb|EEL41046.1| hypothetical protein bcere0020_14290 [Bacillus cereus Rock3-29]
gi|401132290|gb|EJQ39932.1| hypothetical protein IEC_00818 [Bacillus cereus BAG5O-1]
gi|401177313|gb|EJQ84505.1| hypothetical protein IGK_00821 [Bacillus cereus HuB4-10]
gi|401183141|gb|EJQ90258.1| hypothetical protein IGO_01401 [Bacillus cereus HuB5-5]
gi|401255006|gb|EJR61231.1| hypothetical protein IK3_03924 [Bacillus cereus VD148]
gi|401631258|gb|EJS49055.1| hypothetical protein IC9_03859 [Bacillus cereus BAG1O-2]
gi|402412624|gb|EJV44977.1| hypothetical protein IEA_03868 [Bacillus cereus BAG4X2-1]
gi|402415339|gb|EJV47663.1| hypothetical protein IEK_03816 [Bacillus cereus BAG6O-1]
gi|402461451|gb|EJV93164.1| hypothetical protein IGI_03858 [Bacillus cereus HuB2-9]
gi|407381763|gb|AFU12264.1| ribonuclease H [Bacillus thuringiensis MC28]
Length = 128
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGIQPPV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|348678921|gb|EGZ18738.1| hypothetical protein PHYSODRAFT_381063 [Phytophthora sojae]
Length = 129
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN AEY ALI GL AL G + + V+GDS L+ Q++G + NN L L +A+ L
Sbjct: 42 TNNTAEYIALISGLTGALHHGVRRLTVKGDSTLILEQVRGRYACNNARLRQLRNQARRLL 101
Query: 275 EKFQSFQINHILRNLNSEADAQANMGI 301
+ +++ H+ R N +AD AN +
Sbjct: 102 RRLDYYELVHVDRLENRDADRLANRAL 128
>gi|359490420|ref|XP_003634084.1| PREDICTED: uncharacterized protein LOC100853663 [Vitis vinifera]
Length = 2086
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1542 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1601
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1602 VGRFDDLRYTHLPRAQNQFADALATLA 1628
>gi|147815071|emb|CAN74570.1| hypothetical protein VITISV_034081 [Vitis vinifera]
Length = 1998
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1474 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1533
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1534 VGRFDDLRYTHLPRAQNQFADALATLA 1560
>gi|147779083|emb|CAN71393.1| hypothetical protein VITISV_005159 [Vitis vinifera]
Length = 2155
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1650 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1709
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1710 VGRFDDLRYTHLPRAQNQFADALATLA 1736
>gi|163939500|ref|YP_001644384.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|229011009|ref|ZP_04168203.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
gi|229058324|ref|ZP_04196709.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|229166532|ref|ZP_04294285.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|423366574|ref|ZP_17344007.1| hypothetical protein IC3_01676 [Bacillus cereus VD142]
gi|423486803|ref|ZP_17463485.1| hypothetical protein IEU_01426 [Bacillus cereus BtB2-4]
gi|423492527|ref|ZP_17469171.1| hypothetical protein IEW_01425 [Bacillus cereus CER057]
gi|423500682|ref|ZP_17477299.1| hypothetical protein IEY_03909 [Bacillus cereus CER074]
gi|423516355|ref|ZP_17492836.1| hypothetical protein IG7_01425 [Bacillus cereus HuA2-4]
gi|423594385|ref|ZP_17570416.1| hypothetical protein IIG_03253 [Bacillus cereus VD048]
gi|423600973|ref|ZP_17576973.1| hypothetical protein III_03775 [Bacillus cereus VD078]
gi|423663423|ref|ZP_17638592.1| hypothetical protein IKM_03820 [Bacillus cereus VDM022]
gi|423667379|ref|ZP_17642408.1| hypothetical protein IKO_01076 [Bacillus cereus VDM034]
gi|423676588|ref|ZP_17651527.1| hypothetical protein IKS_04131 [Bacillus cereus VDM062]
gi|163861697|gb|ABY42756.1| ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|228616936|gb|EEK74008.1| hypothetical protein bcere0007_15040 [Bacillus cereus AH621]
gi|228719998|gb|EEL71587.1| hypothetical protein bcere0026_14370 [Bacillus cereus AH603]
gi|228750181|gb|EEM00013.1| hypothetical protein bmyco0001_14610 [Bacillus mycoides DSM 2048]
gi|401087731|gb|EJP95933.1| hypothetical protein IC3_01676 [Bacillus cereus VD142]
gi|401154968|gb|EJQ62382.1| hypothetical protein IEY_03909 [Bacillus cereus CER074]
gi|401156011|gb|EJQ63418.1| hypothetical protein IEW_01425 [Bacillus cereus CER057]
gi|401165261|gb|EJQ72580.1| hypothetical protein IG7_01425 [Bacillus cereus HuA2-4]
gi|401224182|gb|EJR30740.1| hypothetical protein IIG_03253 [Bacillus cereus VD048]
gi|401231519|gb|EJR38022.1| hypothetical protein III_03775 [Bacillus cereus VD078]
gi|401295323|gb|EJS00947.1| hypothetical protein IKM_03820 [Bacillus cereus VDM022]
gi|401304130|gb|EJS09688.1| hypothetical protein IKO_01076 [Bacillus cereus VDM034]
gi|401307709|gb|EJS13134.1| hypothetical protein IKS_04131 [Bacillus cereus VDM062]
gi|402438680|gb|EJV70689.1| hypothetical protein IEU_01426 [Bacillus cereus BtB2-4]
Length = 128
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|108708701|gb|ABF96496.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1006
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ F GA N AGAG +L + G ++ + ATN AEY L+ G++ A
Sbjct: 525 TWTMAFVGAL--NSQGAGAGFILTSPLGDQFKHAIYLNFRATNKTAEYEGLLAGIRVAAA 582
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDSKLV Q+ +K ++ L+ E ++L+++F ++ H+ R N E
Sbjct: 583 LGVKRLIVKGDSKLVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYRKDNIEP 642
Query: 294 D 294
D
Sbjct: 643 D 643
>gi|359497075|ref|XP_003635417.1| PREDICTED: protein NYNRIN-like, partial [Vitis vinifera]
Length = 1279
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 704 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 761
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV MQIQG WK + L + L +F + H+ R N AD
Sbjct: 762 DIRQMEVFGDSNLVLMQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAHNRFAD 821
Query: 295 AQANMG 300
A A +
Sbjct: 822 ALATLA 827
>gi|147834845|emb|CAN68307.1| hypothetical protein VITISV_034582 [Vitis vinifera]
Length = 1881
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 47/86 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 1343 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 1402
Query: 274 KEKFQSFQINHILRNLNSEADAQANM 299
+F + H+ R N ADA A +
Sbjct: 1403 VGRFDDLRYTHLPRAQNQFADALATL 1428
>gi|147837850|emb|CAN67148.1| hypothetical protein VITISV_008839 [Vitis vinifera]
Length = 1747
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKYAL 232
FDGA+ N G G +L + G + V +A TNN+ EY A ILGL+ AL
Sbjct: 1551 FDGAT--NHSGYGIGVLLISPHGD--HIPRSVRLAFSDRHPTTNNIVEYEACILGLEMAL 1606
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ G + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 1607 ELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQF 1666
Query: 293 ADAQANMG 300
ADA A +
Sbjct: 1667 ADALATLA 1674
>gi|374325633|ref|YP_005083830.1| ribonuclease H [Pyrobaculum sp. 1860]
gi|356640899|gb|AET31578.1| ribonuclease H [Pyrobaculum sp. 1860]
Length = 193
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 180 FDGASKG-NPGQAGA--GAVLRAE-----DGSVYRLREGVGIATNNVAEYRALILGLKYA 231
FDGA + NPG GA AV E +G V + G TNN AEY AL+ L++A
Sbjct: 13 FDGACEPVNPGGVGAYGFAVFDGEREVYGEGGVVCV--GERWCTNNYAEYSALVRALEWA 70
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNS 291
L G + + V GDS+LV Q+ G + + +L L + A EL +F+ F I+ + R NS
Sbjct: 71 LSNGVECVAVYGDSQLVVRQVLGEYAVRAPHLKPLYERALELAGRFKGFSISWVPRGENS 130
Query: 292 EAD 294
AD
Sbjct: 131 RAD 133
>gi|147791735|emb|CAN68353.1| hypothetical protein VITISV_022217 [Vitis vinifera]
Length = 2168
Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1593 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1650
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG W+ + L + L +F + H+ R N AD
Sbjct: 1651 GIRQMEVFGDSNLVLRQIQGEWRTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1710
Query: 295 AQANM 299
A A +
Sbjct: 1711 ALATL 1715
>gi|229160640|ref|ZP_04288634.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
gi|228622839|gb|EEK79671.1| hypothetical protein bcere0009_14310 [Bacillus cereus R309803]
Length = 128
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA+KGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGATKGNPGPSGAGVFIKGVQPPV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYSIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV I+ + N+ A L EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAIEKEYA-KNKMFAPLLDEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147865890|emb|CAN78842.1| hypothetical protein VITISV_015163 [Vitis vinifera]
Length = 2177
Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1617 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1674
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1675 GIRQMEVFGDSNLVLRQIQGEWKTRDVKLXPYHAYLELLVXRFXDLRYTHLPRAQNQFAD 1734
Query: 295 A 295
A
Sbjct: 1735 A 1735
>gi|430758377|ref|YP_007209269.1| Ribonuclease H-like protein [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430022897|gb|AGA23503.1| Ribonuclease H-like protein [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 132
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G+ +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GTAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|423509508|ref|ZP_17486039.1| hypothetical protein IG3_01005 [Bacillus cereus HuA2-1]
gi|402456799|gb|EJV88572.1| hypothetical protein IG3_01005 [Bacillus cereus HuA2-1]
Length = 128
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCTKHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKIFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|62734520|gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1647
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + ++ + ATNN AEY L+ G++ A
Sbjct: 949 TWTMVFDGAL--NSQGAGAGFILTSPSRDQFKHAFHLNFRATNNTAEYEGLLAGIRVATA 1006
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N E
Sbjct: 1007 LGVKRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKIFDGIEVRHVYRKDNIEP 1066
Query: 294 DAQAN 298
+ A
Sbjct: 1067 NDLAR 1071
>gi|62734737|gb|AAX96846.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
gi|77549963|gb|ABA92760.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1401
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N GAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1034 TWTMAFDGAL--NSQGVGAGFILTSPLGDQFKHAIHLNFRATNNTAEYEGLLAGIRAATA 1091
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ +K ++ L+ E +L+++F ++ H+ R N E
Sbjct: 1092 LGVRRLIVKGDSELVANQVHKDYKYSSPELSNYLAEVWKLEKRFDGIEVRHVYRKDNIEP 1151
Query: 294 D 294
+
Sbjct: 1152 N 1152
>gi|147783047|emb|CAN73070.1| hypothetical protein VITISV_016195 [Vitis vinifera]
Length = 1720
Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 47/87 (54%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
+TNN+ EY A ILGL+ AL+ G K ++V GDS LV QIQG WK + L + L
Sbjct: 1375 STNNIVEYEACILGLETALELGIKQMKVFGDSNLVLRQIQGKWKTKDVKLKPYHAYLELL 1434
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N DA A +
Sbjct: 1435 VRRFDDLRYTHLPRVQNQFVDALATLA 1461
>gi|110288518|gb|AAP51765.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1416
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
T+ FDG+ + GAG VL + G RL AL+ GL+ A+ G
Sbjct: 1120 TMHFDGSKRLT--GTGAGVVLISPTGE--RLS-------------YALLHGLRIAISLGI 1162
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + V+GDS+LV Q+ W + N+ +E ++L++KF ++ H+LR+ N AD
Sbjct: 1163 RRLIVRGDSQLVVNQVMKEWSCLDDNMTAYRQEVRKLEDKFDGLELTHVLRHNNEAADRL 1222
Query: 297 ANMG 300
AN G
Sbjct: 1223 ANFG 1226
>gi|108864326|gb|ABA93256.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1371
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AGAG +L + ++ + ATNN AEY L+ G++ A
Sbjct: 949 TWTMVFDGAL--NSQGAGAGFILTSPSRDQFKHAFHLNFRATNNTAEYEGLLAGIRVATA 1006
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K ++ L+ E ++L++ F ++ H+ R N E
Sbjct: 1007 LGVKRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKIFDGIEVRHVYRKDNIEP 1066
Query: 294 DAQA 297
+ A
Sbjct: 1067 NDLA 1070
>gi|108862433|gb|ABA97326.2| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 916
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKY 230
N + T+ F+GA N AGAG +L + G ++ + A+NN AEY L+ G++
Sbjct: 351 NNETWTMAFNGAL--NSQGAGAGFILTSPSGDQFKHVIHLNFRASNNTAEYEGLLAGIRA 408
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
A G K + V+GDS+LV Q+ +K +N L+ + ++L+++ ++ H+ R N
Sbjct: 409 AAALGVKRLIVKGDSELVANQVHKDYKCSNPELSKYLAKVRKLEKRLNGIEVRHVYRKDN 468
Query: 291 SEAD 294
E D
Sbjct: 469 IEPD 472
>gi|242096048|ref|XP_002438514.1| hypothetical protein SORBIDRAFT_10g021240 [Sorghum bicolor]
gi|241916737|gb|EER89881.1| hypothetical protein SORBIDRAFT_10g021240 [Sorghum bicolor]
Length = 441
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRA 223
LN P ++ FDG+ N AG V +D Y LR + A+NNVAEY A
Sbjct: 31 LNEPPPPDTSDHWSMFFDGSL--NIKGAGILFVSPNKDKLRYILR-ILFPASNNVAEYEA 87
Query: 224 LILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN 283
+ ++ A++ G K + V GDS LV Q+ W ++ + CKE ++ + F +
Sbjct: 88 CLHDIRLAVELGVKRLYVHGDSALVINQLNKEWDTTHEKMDLYCKEIQKWESNFYGIEYI 147
Query: 284 HILRNLNSEADA 295
H++R+ N ADA
Sbjct: 148 HVVRDRNQAADA 159
>gi|196038938|ref|ZP_03106245.1| ribonuclease H [Bacillus cereus NVH0597-99]
gi|196030083|gb|EDX68683.1| ribonuclease H [Bacillus cereus NVH0597-99]
Length = 128
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG + +V +L +G +N+ AEY AL+ LKY + Y +
Sbjct: 7 DGASKGNPGPSGAGVFITGVQPAV-QLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|147775396|emb|CAN67021.1| hypothetical protein VITISV_007533 [Vitis vinifera]
Length = 783
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 281 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDTKLRPYHTYLELL 340
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H R N ADA A +
Sbjct: 341 VGRFDDLRYTHQPRAQNQFADALATLA 367
>gi|147863367|emb|CAN78353.1| hypothetical protein VITISV_043748 [Vitis vinifera]
Length = 898
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A NN+ EY A ILGL+ AL+ +H+ V GDS LV QIQG WK + L + L
Sbjct: 511 AMNNIVEYEACILGLETALELEIRHMEVFGDSNLVLRQIQGGWKTRDAKLRPYHAYLELL 570
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
F + HILR N ++A A +
Sbjct: 571 VGMFDDLRYTHILRAQNQFSNALATLA 597
>gi|147860177|emb|CAN82919.1| hypothetical protein VITISV_008801 [Vitis vinifera]
Length = 2318
Score = 64.3 bits (155), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1743 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1800
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1801 GIGQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1860
Query: 295 AQANMG 300
A A +
Sbjct: 1861 ALATLA 1866
>gi|224120570|ref|XP_002330975.1| predicted protein [Populus trichocarpa]
gi|222872767|gb|EEF09898.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-TNNVAEYRALILGLKYALQKGY 236
+ FDGA N GAGAV+ + D Y + + TNN EY A ILG + AL+
Sbjct: 142 MYFDGAV--NVCGNGAGAVIISPDKKQYPVSVKLQFGCTNNTTEYEACILGFEAALELNI 199
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ I V GDS L+ Q++G W+ + L + +L +F+ + H+ R N ADA
Sbjct: 200 RKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSKLAGEFEEIEFTHLGREGNQFADAL 259
Query: 297 ANMG 300
A +
Sbjct: 260 ATLA 263
>gi|147790256|emb|CAN65601.1| hypothetical protein VITISV_030284 [Vitis vinifera]
Length = 654
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKYAL 232
FDGA+ N G G +L + G + V +A TNN+ EY A ILGL+ AL
Sbjct: 110 FDGAA--NQSGYGIGVLLVSPQGD--HIPRSVRLAFSDRHPVTNNIVEYEACILGLEIAL 165
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSE 292
+ + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 166 ELDIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRF 225
Query: 293 ADAQANMG 300
ADA A +
Sbjct: 226 ADALATLA 233
>gi|423555543|ref|ZP_17531846.1| hypothetical protein II3_00748 [Bacillus cereus MC67]
gi|401196947|gb|EJR03885.1| hypothetical protein II3_00748 [Bacillus cereus MC67]
Length = 128
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGTMSNHEAEYHALLAALKYCATHNYSIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|116309521|emb|CAH66586.1| OSIGBa0111E13.4 [Oryza sativa Indica Group]
Length = 523
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 384 ATNNIAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKL 443
Query: 274 KEKFQSFQINHILRNLNSEAD 294
+++F ++ H+ R N E D
Sbjct: 444 EKRFDRIEVRHVYRKDNIEPD 464
>gi|62733358|gb|AAX95475.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62733703|gb|AAX95813.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550263|gb|ABA93060.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1367
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N GAG++L + G ++ + ATNN AEY L+ G++ A
Sbjct: 965 TWTMAFDGAL--NSQGPGAGSILTSPSGDQFKHEIHLNFRATNNTAEYEGLLAGIRAAAA 1022
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ I N E
Sbjct: 1023 LGVKRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRDIYCKDNIEP 1082
Query: 294 D 294
D
Sbjct: 1083 D 1083
>gi|218198771|gb|EEC81198.1| hypothetical protein OsI_24213 [Oryza sativa Indica Group]
Length = 206
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 55 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 114
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 115 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 174
Query: 297 ANMG 300
A +G
Sbjct: 175 AELG 178
>gi|386758775|ref|YP_006231991.1| RNase H [Bacillus sp. JS]
gi|384932057|gb|AFI28735.1| RNase H [Bacillus sp. JS]
Length = 132
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GKAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERAAE-LEMVKNKTFQPFVEEITRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|423481581|ref|ZP_17458271.1| hypothetical protein IEQ_01359 [Bacillus cereus BAG6X1-2]
gi|401144789|gb|EJQ52316.1| hypothetical protein IEQ_01359 [Bacillus cereus BAG6X1-2]
Length = 128
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA+KGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGATKGNPGPSGAGVFIKGVQPPV-QLSVPLGTMSNHEAEYHALLAALKYCAAHNYSSVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|406977775|gb|EKD99865.1| Ribonuclease H [uncultured bacterium]
Length = 145
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGY--KH 238
DG S+ NPG + G + V+ + + +G+ATNN AEY+A+I LKY + +
Sbjct: 12 DGGSRNNPGPSAIGVYATSTGQEVFTISQYLGVATNNEAEYQAVIYALKYLKENEIFSPN 71
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE------LKEKFQSFQINHILRNLNSE 292
I DS+L+ QI G++K+ +L L + + L ++ + ++LR N +
Sbjct: 72 ITFVLDSELIVKQITGIYKVKQPHLQALKTQVLDLIGQLNLSKQILDLKFVNVLREKNKD 131
Query: 293 ADAQANMGI 301
AD N+ +
Sbjct: 132 ADRLVNLAL 140
>gi|356510620|ref|XP_003524035.1| PREDICTED: uncharacterized protein LOC100801712 [Glycine max]
Length = 1186
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGAS N G GAVL + D +G TNN+A+Y A L ++ A+
Sbjct: 1035 TVWFDGAS--NILGHGVGAVLVSPDNQCVPFTARLGFDYTNNMAKYEACALAVQAAIDSD 1092
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K ++V GDS LV Q++G W+ N L KEL + F +H+ N AD
Sbjct: 1093 VKLLKVYGDSALVIHQLRGEWETRNPKLIPYKAYIKELAKTFDEISFHHVPCEENQMADV 1152
Query: 296 QANMGIYL 303
A + L
Sbjct: 1153 LATLASML 1160
>gi|147769225|emb|CAN71859.1| hypothetical protein VITISV_012970 [Vitis vinifera]
Length = 1710
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ L+
Sbjct: 1210 FDGAA--NHSGYGIGVLLISPHGDHIPKSVRLAFSDRHPATNNIVEYEACILGLETTLEL 1267
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1268 GIRQMEVFGDSNLVLRQIQGEWKTKDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1327
Query: 295 AQANMG 300
A A +
Sbjct: 1328 ALATLA 1333
>gi|340354737|ref|ZP_08677438.1| ribonuclease HI [Sporosarcina newyorkensis 2681]
gi|339623136|gb|EGQ27642.1| ribonuclease HI [Sporosarcina newyorkensis 2681]
Length = 136
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHI 239
DGAS GNPG +G G ++ E G ++ E + N+ AE++AL+ GL+ A++ +
Sbjct: 9 IDGASAGNPGLSGIGVYIKGE-GHDVKISEPIEPTNNHTAEFQALLRGLEEAVKLTSGMV 67
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANM 299
V+ DS +V ++ + I N+ A K+A +L E+F F I I + N AD A
Sbjct: 68 SVRSDSNVVVQAMEKEF-IKNEEYAPYLKKAMKLTEQFDFFFIKWIPDHTNKTADVLARQ 126
Query: 300 GI 301
I
Sbjct: 127 AI 128
>gi|108705673|gb|ABF93468.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1800
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG +L + +G V R + ATNN+AEY L+ G
Sbjct: 1203 LPHTAY-WVMQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAG 1259
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1260 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1319
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1320 RDNAVAD 1326
>gi|428279662|ref|YP_005561397.1| hypothetical protein BSNT_03277 [Bacillus subtilis subsp. natto
BEST195]
gi|291484619|dbj|BAI85694.1| hypothetical protein BSNT_03277 [Bacillus subtilis subsp. natto
BEST195]
Length = 132
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GIAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNKTFQPFVEEITRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|288556211|ref|YP_003428146.1| ribonuclease H [Bacillus pseudofirmus OF4]
gi|288547371|gb|ADC51254.1| ribonuclease H [Bacillus pseudofirmus OF4]
Length = 130
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS G+PG +GAG + +DGSV +G +N+ AEY AL+ LK +KG+K +
Sbjct: 7 DGASAGDPGPSGAGIFINYKDGSVGHYSIPLGHMSNHEAEYEALLHALKICKEKGFKQVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+L+ ++ + + N+ +EA ++F F + + N +AD A
Sbjct: 67 FRTDSQLIDQAVEKRY-VKNKRYNQYLEEALVYIDEFDLFFMKWVPSKQNKDADQLARRA 125
Query: 301 I 301
I
Sbjct: 126 I 126
>gi|77556077|gb|ABA98873.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 864
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ F+GA N A AG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 425 TWTMAFNGAL--NSQGARAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAT 482
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
K + V+GDS+LV Q+ +K +N L+ E ++L+++F ++ H+ R N E
Sbjct: 483 LEAKRLIVKGDSELVTNQVHKDYKCSNSELSKYLAEVRKLEKRFDGIEVRHVYRKDNVEP 542
Query: 294 DAQA 297
D A
Sbjct: 543 DDLA 546
>gi|147864313|emb|CAN80945.1| hypothetical protein VITISV_026851 [Vitis vinifera]
Length = 1112
Score = 63.9 bits (154), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS--------VYRLREGVGIATNNVAEYRALILGLK 229
L FDGA+ N G G +L + G V+R R + TNN+ EY A IL L+
Sbjct: 537 LYFDGAA--NQLGYGIGVLLVSPQGDHIPRSVRLVFRDRHPI---TNNIVEYEACILDLE 591
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
AL+ G + + V GDS LV QIQG WK + L + L +F + + H+ R
Sbjct: 592 TALELGIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDNLRYVHLPRAQ 651
Query: 290 NSEADAQANMG 300
N ADA A +
Sbjct: 652 NQFADALATLA 662
>gi|423454855|ref|ZP_17431708.1| hypothetical protein IEE_03599 [Bacillus cereus BAG5X1-1]
gi|423472432|ref|ZP_17449175.1| hypothetical protein IEM_03737 [Bacillus cereus BAG6O-2]
gi|423524514|ref|ZP_17500987.1| hypothetical protein IGC_03897 [Bacillus cereus HuA4-10]
gi|401135824|gb|EJQ43421.1| hypothetical protein IEE_03599 [Bacillus cereus BAG5X1-1]
gi|401170357|gb|EJQ77598.1| hypothetical protein IGC_03897 [Bacillus cereus HuA4-10]
gi|402427964|gb|EJV60062.1| hypothetical protein IEM_03737 [Bacillus cereus BAG6O-2]
Length = 128
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LKY Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGTMSNHEAEYHALLAALKYCAAHNYSIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKNFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|62733905|gb|AAX96014.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|62734500|gb|AAX96609.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
gi|77550188|gb|ABA92985.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 710
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 204 VYRLREGVGIATNNVA----EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKIN 259
V +L GV I ++ EY ALI GL+ A+ G + + V+GDS+LV Q+ W
Sbjct: 460 VQKLLYGVLITVRKLSHYFQEYEALIHGLRIAISLGIRRLIVRGDSQLVVNQVMKEWSSL 519
Query: 260 NQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ N+ +E ++L++KF ++ ++LR+ N AD A+ G
Sbjct: 520 DDNMTAYRQEVRKLEDKFDGLELTYVLRHNNEAADRLAHFG 560
>gi|77554693|gb|ABA97489.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1226
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 160 ADSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVY----RLREGVGIAT 215
+ CL + +P+ Y FDG+S GQ G G VL + +G Y RL T
Sbjct: 626 GEVCL-VEVIPWRIY-----FDGSS-CKEGQ-GTGVVLFSPNGMCYEASVRLEY---YCT 674
Query: 216 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE 275
NN AEY AL+ GL+ G K++ GDS+LV Q+ G++K +++L ++
Sbjct: 675 NNEAEYNALLFGLQVMEMVGAKYVEAFGDSELVVQQVAGIYKCLDESLNRYLDSCLDIIA 734
Query: 276 KFQSFQINHILRNLNSEAD--AQANMGIYLKDG 306
F +F I HI R NS A+ AQ G +K G
Sbjct: 735 NFDNFVIRHIARRDNSRANDLAQQASGYNVKKG 767
>gi|222636103|gb|EEE66235.1| hypothetical protein OsJ_22399 [Oryza sativa Japonica Group]
Length = 192
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 55 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 114
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 115 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 174
Query: 297 ANMG 300
A +G
Sbjct: 175 AELG 178
>gi|449457791|ref|XP_004146631.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
gi|449488498|ref|XP_004158057.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 205
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 24/172 (13%)
Query: 146 STSFSINTQRSHLNADSCLNTQSVPYNC------YSCT-LEFDGASKGN--PGQAGAGAV 196
S+++ I +S L A L+ + +P + T L FDG+SKG PG A G V
Sbjct: 7 SSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGV 66
Query: 197 LRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGL 255
LR + E +G A +++AE +AL GL+ L+ G+K + V+GD+K GL
Sbjct: 67 LRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAK-------GL 119
Query: 256 WKINNQNLAGLCKEA-------KELKEKFQSFQINHILRNLNSEADAQANMG 300
+I +N C EA K L F + +++HI R N AD A++G
Sbjct: 120 VEILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIG 171
>gi|147820124|emb|CAN60550.1| hypothetical protein VITISV_040254 [Vitis vinifera]
Length = 1494
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKY 230
L FDGA+ N G G +L + G + V +A TNN+ EY A ILGL+
Sbjct: 940 LYFDGAA--NQLGYGIGVLLVSSQGD--HIPRSVRLAFHDRHPITNNIVEYEACILGLET 995
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 996 ALELGIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVARFDDLRYVHLPRAQN 1055
Query: 291 SEADAQANMG 300
ADA A +
Sbjct: 1056 RFADALATLA 1065
>gi|147801322|emb|CAN77032.1| hypothetical protein VITISV_015343 [Vitis vinifera]
Length = 2281
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGS----VYRLREGV-GIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G RL V ATNN+ EY A ILGL+ AL+
Sbjct: 1729 FDGAA--NHSGYGVGVLLISPHGDHIPRSVRLAFSVRHPATNNIVEYEACILGLETALEL 1786
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV Q+QG WK + L + L +F + H+ R N D
Sbjct: 1787 GIRQMEVFGDSNLVLRQVQGEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRARNQFTD 1846
Query: 295 AQANMG 300
A A +
Sbjct: 1847 ALATLA 1852
>gi|147838310|emb|CAN76756.1| hypothetical protein VITISV_012606 [Vitis vinifera]
Length = 1195
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV + TNN+ EY A ILGL+ AL+
Sbjct: 620 FDGAA--NQLGFGIGVLLISPQGDHIPRSVSLVFSDRHPTTNNIVEYEACILGLETALEL 677
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 678 GIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 737
Query: 295 AQANMG 300
A A +
Sbjct: 738 ALATLA 743
>gi|53749265|gb|AAU90124.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1796
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1199 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1255
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q++ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1256 LRVAAGLGIRRLLVLGDSQLVVNQVRKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1315
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1316 RDNAVAD 1322
>gi|297725193|ref|NP_001174960.1| Os06g0683500 [Oryza sativa Japonica Group]
gi|52076651|dbj|BAD45551.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255677331|dbj|BAH93688.1| Os06g0683500 [Oryza sativa Japonica Group]
Length = 240
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGS-VYRLREGVGIATNNVAEYRALILGLKYALQKGY 236
L FDG+SK + G A G V R DG+ + E +G AT++VAE AL GL+ A++ G+
Sbjct: 89 LNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRRGLELAVRNGW 148
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ + +GDSK V + + ++ LC+E L + ++H+ R N A
Sbjct: 149 RRVWAEGDSKAVVDVVCDRADVQSEEDLRLCREIAALLPQLDDMAVSHVRRGGNKVAHGF 208
Query: 297 ANMG 300
A +G
Sbjct: 209 AELG 212
>gi|147798955|emb|CAN68163.1| hypothetical protein VITISV_015675 [Vitis vinifera]
Length = 1965
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 46/87 (52%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ + + V GDS LV QIQG WK N L + L
Sbjct: 1392 ATNNIVEYEACILGLETALELEIRQMEVFGDSNLVWRQIQGEWKTRNVELRPYHAYLELL 1451
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1452 VRRFDDLRYTHLPRAQNQFADALATLA 1478
>gi|34761728|gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
TL FDGA N G GAVL G+ + TNN AEY A I+G++ A+
Sbjct: 1687 TLMFDGAVNMNGN--GVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGIEEAIDLR 1744
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + + GDS LV Q+ G W N +L + + F+ ++ H+ R+ N ADA
Sbjct: 1745 IKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMADA 1804
Query: 296 QANMGIYLK 304
A + +K
Sbjct: 1805 LATLSSMIK 1813
>gi|147818449|emb|CAN60892.1| hypothetical protein VITISV_040647 [Vitis vinifera]
Length = 1795
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKY 230
L FDGA+ N G G +L + G + V +A TNN+ EY A ILGL+
Sbjct: 1371 LYFDGAA--NQLGYGIGVLLVSPQGD--HIPRSVRLAFHDRHPITNNIVEYEACILGLET 1426
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ R N
Sbjct: 1427 ALELGIRQMXVFGDSNLVLRQIQGDWKTRDVKLXPYHAYLELLVARFDDLRYVHLPRAXN 1486
Query: 291 SEADAQANMG 300
ADA A +
Sbjct: 1487 RFADALATLA 1496
>gi|77556224|gb|ABA99020.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 960
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKY 230
N + T+ FDGA N AGAG +L + G ++ + ATNN AEY L+ G++
Sbjct: 490 NNETWTMAFDGAL--NSQGAGAGFILTSLLGDQFKHAIHLNFRATNNTAEYEGLLAGIRA 547
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
A G + + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H+ N
Sbjct: 548 AATLGVRRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRHVYHKDN 607
Query: 291 SEAD 294
E +
Sbjct: 608 IEPN 611
>gi|77555199|gb|ABA97995.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1123
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 191 AGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 249
AG A+L + G R + TNN AEY A+++GL+ A G +H+ V+ DSKLV
Sbjct: 928 AGIAAILTSPGGVSIRYATRLQFDTTNNTAEYEAVLMGLREAKALGIQHLLVRTDSKLVA 987
Query: 250 MQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIY 302
Q+ ++ + + + + + + F + H+ R N EADA A + Y
Sbjct: 988 SQVDKSFEAKEEGMRKYLEVVQSMDKIFTGITVEHLPRGHNEEADALAKLATY 1040
>gi|77555778|gb|ABA98574.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1984
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 18/127 (14%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQ 233
T+ FDG+ + + GAG VL + G RL + I A++NVAEY AL+ GL+ A+
Sbjct: 1422 TMHFDGSKRLS--GTGAGVVLISPTGE--RLSYVLWIHFSASHNVAEYEALLHGLRIAIS 1477
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K +L+ M+ W + N+ +E ++L++KF +++H+LR+ N A
Sbjct: 1478 LGIK--------RLIVMK---EWSRLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 1526
Query: 294 DAQANMG 300
D AN G
Sbjct: 1527 DRLANFG 1533
>gi|356573911|ref|XP_003555099.1| PREDICTED: uncharacterized protein LOC100793393 [Glycine max]
Length = 1252
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKH 238
FD AS N G GAVL + D +G TNN+AEY A LG++ A+ K
Sbjct: 682 FDRAS--NALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACTLGVQAAIDFDVKL 739
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
++V GDS LV Q++G W+ + L L + F +HI R N ADA A
Sbjct: 740 LKVYGDSALVIRQLKGEWETRDSKLIPYQTHILRLAKYFDDISFHHIPREENQMADALAT 799
Query: 299 MG 300
+
Sbjct: 800 LA 801
>gi|321311665|ref|YP_004203952.1| ribonuclease H [Bacillus subtilis BSn5]
gi|320017939|gb|ADV92925.1| ribonuclease H [Bacillus subtilis BSn5]
Length = 132
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G+ +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GTAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNKMFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|147855720|emb|CAN81323.1| hypothetical protein VITISV_019409 [Vitis vinifera]
Length = 2174
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1610 FDGAA--NHSGYGIGVLLISPHGDHIPRSVRLAFSDRHSATNNIVEYEACILGLETALEL 1667
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQ WK + L + L +F + H+ R N AD
Sbjct: 1668 GIRQMEVFGDSNLVLRQIQSEWKTRDVKLKPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1727
Query: 295 AQANMG 300
A A +
Sbjct: 1728 ALATLA 1733
>gi|14018045|gb|AAK52108.1|AC079936_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 275
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQK 234
+ FD A N +AGAG +L + G R R + + ATNN+A+Y L GL+ A+
Sbjct: 168 MTFDRAL--NSQRAGAGFILTSLTGD--RFRHAIHLNFRATNNIAKYEGLPSGLRAAVAL 223
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
G K + V+GDS+LV Q+ +K +N LA + ++L+ KF +I H
Sbjct: 224 GVKRLIVKGDSELVANQVHKDYKCSNPELAKYLTDVRKLERKFDGVEIRH 273
>gi|147860783|emb|CAN83164.1| hypothetical protein VITISV_002083 [Vitis vinifera]
Length = 488
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKY 230
L FDGA N G G +L + G + V +A TNN+ +Y A ILGL+
Sbjct: 100 LYFDGAX--NQLXYGIGVLLVSPXGDX--IPRSVRLAFHDRHPITNNIVKYEACILGLET 155
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL+ G + + V GDS LV QIQG WK + L + L +F + H+ + N
Sbjct: 156 ALELGIRQMXVFGDSNLVLRQIQGDWKTRDVKLXPYHAYLELLVARFDDLRYVHLPKAXN 215
Query: 291 SEADAQANMG 300
ADA A +
Sbjct: 216 XFADALATLA 225
>gi|38344641|emb|CAE05074.2| OSJNBa0094P09.13 [Oryza sativa Japonica Group]
Length = 2027
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N +P+ + ++FDG+ AGAG L + G V R + ATNN+A
Sbjct: 1422 EASTNPSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1478
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A G +H+ V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1479 EYEGLLAGLRVAAGLGIRHLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1538
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1539 IELRHVPRRDNMIAD 1553
>gi|406995480|gb|EKE14192.1| ribonuclease H [uncultured bacterium]
Length = 129
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA--LQKGYKH 238
DG SKGNPG + G V ++ ++ +GIATNN AEY+ALI LK + K K
Sbjct: 8 DGGSKGNPGPSSIGGVGYLNGEKIFEFKKSIGIATNNDAEYKALIEALKNIKNIDKISK- 66
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQIN--HILRNLNSEADAQ 296
I DS+L+ Q++GL+K+ N + + L+++ + IN ++ R N EAD
Sbjct: 67 IEFNSDSRLMVNQVKGLFKVKNGRIKEYILIIRGLEQEI-NLPINYSYVPREENVEADLL 125
Query: 297 AN 298
N
Sbjct: 126 VN 127
>gi|147783484|emb|CAN72956.1| hypothetical protein VITISV_002875 [Vitis vinifera]
Length = 1391
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 924 TNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELLV 983
Query: 275 EKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 984 GRFDDLRYTHLPRAQNQFADALATLA 1009
>gi|15614333|ref|NP_242636.1| hypothetical protein BH1770 [Bacillus halodurans C-125]
gi|10174388|dbj|BAB05489.1| BH1770 [Bacillus halodurans C-125]
Length = 135
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS G+PG +GAG + ++G + L +G +N+ AE+ ALI L++ ++G+ +
Sbjct: 7 DGASAGDPGPSGAGIFIDDKNGRLEHLTIPLGRLSNHEAEFHALIYALRFCQEQGWNELW 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
V+ DSKL+ I+ + + NQ L +EA L ++F+ F I + N +AD A
Sbjct: 67 VRTDSKLLEEAIEKRY-VRNQRYRLLLEEALLLIDRFKLFFIKWVPSKENKKADELARTA 125
Query: 301 IYLKD 305
I L D
Sbjct: 126 IRLND 130
>gi|108712180|gb|ABF99975.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1101 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1160
Query: 274 KEKFQSFQINHILRNLNSEAD 294
++F ++ H+ R N E D
Sbjct: 1161 GKRFDGIEVRHVYRKDNIEPD 1181
>gi|54291771|gb|AAV32140.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDG N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 827 TWTMAFDGVL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 884
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K + L+ E ++L+++F ++ H+ N +
Sbjct: 885 LGVKRLIVKGDSELVANQVHKDYKCSCPELSKYLAEVRKLEKRFDGIEVRHVYHKDNIKP 944
Query: 294 D 294
D
Sbjct: 945 D 945
>gi|384175805|ref|YP_005557190.1| RNase H [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595029|gb|AEP91216.1| RNase H [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 132
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G V +G+ TN AE+ ALI G+K GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GIVESFSIPIGVHTNQEAEFLALIEGMKLCATLGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|108706138|gb|ABF93933.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 943
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 417 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 473
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 474 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDLQIDAYVRQVRRMERHFDGIELRHVPR 533
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 534 RDNAVAD 540
>gi|50511459|gb|AAT77381.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1672
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDG N AGAG +L + G ++ + ATNN AEY L+ G++ A
Sbjct: 1119 TWTMAFDGVL--NSQGAGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAA 1176
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G K + V+GDS+LV Q+ +K + L+ E ++L+++F ++ H+ N +
Sbjct: 1177 LGVKRLIVKGDSELVANQVHKDYKCSCPELSKYLAEVRKLEKRFDGIEVRHVYHKDNIKP 1236
Query: 294 D 294
D
Sbjct: 1237 D 1237
>gi|41393250|gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1403
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1091 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1150
Query: 274 KEKFQSFQINHILRNLNSEAD 294
++F ++ H+ R N E D
Sbjct: 1151 GKRFDGIEVRHVYRKDNIEPD 1171
>gi|359497555|ref|XP_003635565.1| PREDICTED: uncharacterized protein LOC100852562, partial [Vitis
vinifera]
Length = 413
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ + + V GDS LV QIQG WK + L + L
Sbjct: 225 ATNNIVEYEACILGLETALELDIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELL 284
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 285 VARFDDLRYVHLPRAQNRFADALATLA 311
>gi|147834589|emb|CAN67489.1| hypothetical protein VITISV_032813 [Vitis vinifera]
Length = 1226
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+ EY A ILGL+ AL+ G + + V GDS LV QIQG WK + L + L
Sbjct: 740 ATNNIVEYEACILGLETALELGIRQMEVFGDSNLVLRQIQGEWKTRDVKLKPYHAYLELL 799
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N DA A +
Sbjct: 800 VGRFDDLRYTHLPRAQNQFVDALATLA 826
>gi|29126356|gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1380
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 1068 ATNNTAEYEGLLAGIRAAAALGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYITEVRKL 1127
Query: 274 KEKFQSFQINHILRNLNSEAD 294
++F ++ H+ R N E D
Sbjct: 1128 GKRFDGIEVRHVYRKDNIEPD 1148
>gi|147767462|emb|CAN71254.1| hypothetical protein VITISV_006362 [Vitis vinifera]
Length = 2154
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV + ATNN+ EY A ILGL+ AL+
Sbjct: 1628 FDGAA--NQLGFGIGVLLISSQGDHIPRSVRLVFSDRHPATNNIVEYEACILGLETALEL 1685
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + V GDS LV QIQG WK + L + L +F + + R N AD
Sbjct: 1686 GIRQMEVFGDSNLVLRQIQGDWKTRDVKLRSYHAYLELLVGRFDDLRYTRLPRAQNQFAD 1745
Query: 295 AQANMG 300
A A +
Sbjct: 1746 ALATLA 1751
>gi|23928443|gb|AAN40029.1| putative gag-pol precursor [Zea mays]
Length = 1313
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYR--LREGVGIATNNVAEYRALILGLKYALQK 234
T+ FDG+ GAG + + G R LR A+NN+AEY AL+ GL+ A++
Sbjct: 952 TMFFDGSLMKT--GVGAGLLFISPLGKHLRCVLRLHFP-ASNNMAEYEALVNGLRIAIEL 1008
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + + +GDS+LV Q+ + + C E + L++KF ++NHI N AD
Sbjct: 1009 GVRRLDARGDSQLVIDQVIKNSHCRDPKMEAYCDEVRRLEDKFYGLEVNHIAWRYNETAD 1068
Query: 295 AQANMG 300
A +
Sbjct: 1069 ELAKIA 1074
>gi|443634811|ref|ZP_21118983.1| hypothetical protein BSI_40620 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345236|gb|ELS59301.1| hypothetical protein BSI_40620 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 132
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G VG+ TN AE+ ALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGPSGVGIFIKHE-GKAESFSIPVGMHTNQEAEFLALIEGMKLCAERGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERAAE-FEMVKNKTYHPYVEEIIRLKAAFPLFFIKWIPGKQNQKADQLAKEA 125
Query: 301 IYLKD 305
I L D
Sbjct: 126 IRLND 130
>gi|284434716|gb|ADB85414.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1429
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 177 TLEFDGAS--KGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
T+ FDG+ KG +GAG VL + G + + ATNNVA+Y L+ GL+ A
Sbjct: 1063 TMYFDGSLMLKG----SGAGVVLISPTGEHIKYAIQLNFPATNNVAKYEGLLAGLRAARS 1118
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V+GDS+LV Q+ ++ ++ ++ + ++L++ F FQI HI R N
Sbjct: 1119 LGIRKLLVKGDSQLVTNQVGKEYQCSSTKMSSYLAKVRKLEKHFFGFQIQHIPRKENFLV 1178
Query: 294 DAQANM 299
D A M
Sbjct: 1179 DQLAQM 1184
>gi|224143380|ref|XP_002336033.1| predicted protein [Populus trichocarpa]
gi|222839399|gb|EEE77736.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
T+ FDGA N GAGAV+ + D Y + + TNN AEY A ILGL+ L+
Sbjct: 313 TMFFDGAV--NVYGNGAGAVIISPDQKQYPVSVKLYFECTNNTAEYEACILGLEAVLELK 370
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
K I V GDS L+ Q++G W+ + L + L E+F+ + H+ R N
Sbjct: 371 IKKIDVYGDSMLIICQVKGEWQTKEEKLRPYQEYLSALSEEFEEIRFTHLGREGN 425
>gi|147853452|emb|CAN82295.1| hypothetical protein VITISV_010377 [Vitis vinifera]
Length = 1571
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 46/86 (53%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN+ EY A ILGL+ AL+ G K + V GDS LV QIQG WK + L + L
Sbjct: 1166 TNNIVEYEACILGLETALELGIKQMEVFGDSNLVLRQIQGDWKTKDVKLKPYHAYLELLV 1225
Query: 275 EKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 1226 ARFDDLRYVHLPRAQNRFADALATLA 1251
>gi|407936766|ref|YP_006852407.1| ribonuclease H [Acidovorax sp. KKS102]
gi|407894560|gb|AFU43769.1| ribonuclease H [Acidovorax sp. KKS102]
Length = 165
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 168 SVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGI-ATNNVAEYRALI 225
+ P + + DG++ NPG+ G GAVL DG+V +++ E NN AE RAL+
Sbjct: 7 AAPLAPGAWVIHCDGSAWPNPGRMGLGAVLTGPDGTVQHQISEATTFTGCNNEAELRALM 66
Query: 226 LGLKYALQKGY---KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQI 282
L L++ Q+G + V D+ ++ Q+ LA L EA+E +F Q+
Sbjct: 67 LALQWLAQQGIATSTQVHVFSDNSVLVEQLGSHPTAPITRLATLFDEAREALRQFPQAQV 126
Query: 283 NHILRNLNSEAD--AQANMGIYLK 304
I R+ N AD A+A +G+ K
Sbjct: 127 QWIPRHRNGAADTLARAALGLAPK 150
>gi|406931471|gb|EKD66754.1| ribonuclease H [uncultured bacterium (gcode 4)]
Length = 153
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLR-EGVGIATNNVAEYRALILGLKYALQKGYKHI 239
D ++ NPG +G G + E+ R + +GI TNN AEY + ++ A++ K I
Sbjct: 8 DWWARWNPGISGIGVYITDENNCCIEKRYKWLGIKTNNQAEYLGALHWIERAIELEAKEI 67
Query: 240 RVQGDSKLVCMQIQGLWKINNQNLAGLCKEA-KELKEKFQSFQINHILRNLNSEADAQAN 298
+ DS+LV Q+ G++KI NQ LA + E K + + HI R N EAD +N
Sbjct: 68 ELYMDSQLVVNQLSGIFKIKNQELAEIRLEIQKAINTWWWKISFYHIPREKNKEADRLSN 127
Query: 299 MGI 301
+ +
Sbjct: 128 IAM 130
>gi|449094693|ref|YP_007427184.1| hypothetical protein C663_2071 [Bacillus subtilis XF-1]
gi|449028608|gb|AGE63847.1| hypothetical protein C663_2071 [Bacillus subtilis XF-1]
Length = 132
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GIAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNKTFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|77555466|gb|ABA98262.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2013
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N +P+ Y ++FDG+ AGAG L + +G V R + ATNN+A
Sbjct: 1408 EASTNPSQLPHTTY-WVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMA 1464
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1465 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1524
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1525 IELRHVPRRDNIVAD 1539
>gi|41469319|gb|AAS07175.1| putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108709517|gb|ABF97312.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2002
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 167 QSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALI 225
+ +P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+
Sbjct: 1403 EQLPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLL 1459
Query: 226 LGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHI 285
GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+
Sbjct: 1460 AGLRVAAGLGIRRLMVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHV 1519
Query: 286 LRNLNSEAD 294
R N+ AD
Sbjct: 1520 PRRDNAVAD 1528
>gi|13957642|gb|AAK50597.1|AC084404_22 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 674
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+AEY L+ GL+ A + G +H+ V GDS+LV Q+ ++ +Q + +E + +
Sbjct: 208 ATNNMAEYEGLLAGLRAAARMGIRHLLVLGDSQLVVNQVPKEYQCTDQQMEAYVREVRRM 267
Query: 274 KEKFQSFQINHILRNLNSEAD 294
+ F ++ H+ + N+ AD
Sbjct: 268 ERNFDGLELRHVPQRDNTVAD 288
>gi|38344085|emb|CAE01745.2| OSJNBb0056F09.8 [Oryza sativa Japonica Group]
Length = 1751
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + V R + ATNN+AEY L+ G
Sbjct: 1329 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSSSCDVLRYLVRLDFRATNNMAEYEGLLAG 1385
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G +H+ V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1386 LRVAAGLGIRHLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1445
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1446 RDNAVAD 1452
>gi|147865111|emb|CAN79817.1| hypothetical protein VITISV_006609 [Vitis vinifera]
Length = 2155
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1225 FDGAT--NHSGYGIGVLLISLHGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1282
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ I V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1283 EIRQIEVFGDSNLVLRQIQGEWKTRDVKLRPYHAYLELLVGRFDDLRYTHLPRAQNQFAD 1342
Query: 295 AQANMG 300
A A +
Sbjct: 1343 ALATLA 1348
>gi|32487613|emb|CAE05919.1| OSJNBa0034E24.13 [Oryza sativa Japonica Group]
Length = 523
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN AEY L+ G++ A G K + V+GDS+LV Q+ +K +N L+ E ++L
Sbjct: 384 ATNNTAEYEGLLAGIRAAATLGVKRLIVKGDSELVTNQVHKDYKCSNPELSKYLAEVRKL 443
Query: 274 KEKFQSFQINHILRNLNSEAD 294
+++F ++ H+ R N E D
Sbjct: 444 EKRFDRIEVRHVYRKDNIEPD 464
>gi|34761721|gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKG 235
TL FDGA N G GAVL G+ + TNN AEY A I+G++ A+
Sbjct: 1689 TLMFDGAVNMNGN--GVGAVLINPKGAHIPFSARLTFDVTNNEAEYEACIMGIEEAIDLR 1746
Query: 236 YKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADA 295
K + + GDS LV Q+ G W N +L + + F+ ++ H+ R+ N ADA
Sbjct: 1747 IKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDENQMADA 1806
Query: 296 QANM 299
A +
Sbjct: 1807 LATL 1810
>gi|78708524|gb|ABB47499.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 108
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQK 234
+ FD A N +AGAG +L + G R R + + ATNN+A+Y L GL+ A+
Sbjct: 1 MTFDRAL--NSQRAGAGFILTSLTGD--RFRHAIHLNFRATNNIAKYEGLPSGLRAAVAL 56
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
G K + V+GDS+LV Q+ +K +N LA + ++L+ KF +I H
Sbjct: 57 GVKRLIVKGDSELVANQVHKDYKCSNPELAKYLTDVRKLERKFDGVEIRH 106
>gi|62734706|gb|AAX96815.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa Japonica Group]
Length = 787
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AG G +L + G ++ + ATNN AEY L++G++ A
Sbjct: 248 TWTMAFDGAF--NSQGAGTGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLIGIRAAAA 305
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H
Sbjct: 306 LGVKRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRH 356
>gi|108864294|gb|ABA92886.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 772
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
+ T+ FDGA N AG G +L + G ++ + ATNN AEY L++G++ A
Sbjct: 248 TWTMAFDGAF--NSQGAGTGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLIGIRAAAA 305
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
G K + V+GDS+LV Q+ +K ++ L+ E ++L+++F ++ H
Sbjct: 306 LGVKRLIVKGDSELVANQVHKDYKCSSPELSKYLAEVRKLEKRFDGIEVRH 356
>gi|32489155|emb|CAE04107.1| OSJNBa0096F01.15 [Oryza sativa Japonica Group]
gi|32489171|emb|CAE04552.1| OSJNBa0052P16.1 [Oryza sativa Japonica Group]
Length = 1384
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
++FDG+ AGAG +L + +G V R + ATNN+AEY L+ GL+ A G
Sbjct: 795 MQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNIAEYEGLLAGLRVAAGLGI 852
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ HI R N AD
Sbjct: 853 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHIPRRDNMVAD 910
>gi|77556933|gb|ABA99729.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1320
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
+ FDG+ N AGAG L + G V + + ATNN+AEY L+ GL+ A G
Sbjct: 963 MHFDGSL--NLQGAGAGVTLTSPSGDVLKYVVRLDFRATNNMAEYEGLLAGLRAAAGMGI 1020
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS+LV Q+ ++ + + +E + ++ F ++ H+ R N+ AD
Sbjct: 1021 RRLLVLGDSQLVVNQVSKEYQCTDPQMDAYVREVRRMERHFDGLELRHVPRRDNTVAD 1078
>gi|108709364|gb|ABF97159.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 711
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
ATNN+AEY L+ GL+ A + G +H+ V GDS+LV Q+ ++ +Q + +E + +
Sbjct: 245 ATNNMAEYEGLLAGLRAAARMGIRHLLVLGDSQLVVNQVPKEYQCTDQQMEAYVREVRRM 304
Query: 274 KEKFQSFQINHILRNLNSEAD 294
+ F ++ H+ + N+ AD
Sbjct: 305 ERNFDGLELRHVPQRDNTVAD 325
>gi|108710404|gb|ABF98199.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1887
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1290 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1346
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1347 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDLIELRHVPR 1406
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1407 RDNAVAD 1413
>gi|13435244|gb|AAK26119.1|AC084406_2 putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 1901
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1304 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1360
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1361 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDLIELRHVPR 1420
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1421 RDNAVAD 1427
>gi|18568247|gb|AAL75984.1|AF466203_13 putative prpol [Zea mays]
Length = 1850
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 214 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKEL 273
A+NNVAEY AL+ GL+ A++ G + + +GDS+LV Q+ + + E + L
Sbjct: 1480 ASNNVAEYEALVNGLRIAIELGVRRLDARGDSQLVIDQVMKNSHCRDPKMEAYYDEVRRL 1539
Query: 274 KEKFQSFQINHILRNLNSEADAQANMG 300
++KF ++NHI R N AD A +
Sbjct: 1540 EDKFFGLELNHIARRYNETADELAKIA 1566
>gi|448493717|ref|ZP_21609148.1| ribonuclease H [Halorubrum californiensis DSM 19288]
gi|445689893|gb|ELZ42115.1| ribonuclease H [Halorubrum californiensis DSM 19288]
Length = 214
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLK-YAL 232
+ L DG+S+GNPG AGAGAVL +D + +L VG A NN AEY AL LGL+ A
Sbjct: 80 AVVLYVDGSSRGNPGPAGAGAVLLVDDDPLLQLGRPVGTSAENNTAEYAALHLGLEAVAA 139
Query: 233 QKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSF---QINHILRNL 289
+ + V+ DS+ V I +W + +A ++E+ + + H+ +
Sbjct: 140 RCDPAAVEVRIDSRTV---IDDVWG-DGDGVAAAAPYRPAIRERLGALPACEWTHLADSD 195
Query: 290 NSEADAQANMG 300
+ ADA+A +G
Sbjct: 196 PNPADARAAVG 206
>gi|48475204|gb|AAT44273.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1943
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1360 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1416
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + +K F ++ H+ R
Sbjct: 1417 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDTYVRQVRRMKRHFDGIELRHVPR 1476
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1477 RDNTIAD 1483
>gi|147797776|emb|CAN69610.1| hypothetical protein VITISV_024102 [Vitis vinifera]
Length = 2037
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKY 230
L FDGA+ N G G +L + G + V +A TNN+ EY A I GL+
Sbjct: 1487 LYFDGAA--NQSGFGIGILLISPQGD--HIPRSVRLAFSDHHRLTNNIVEYEACITGLET 1542
Query: 231 ALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLN 290
AL G + + + GDS LV Q QG+W+ ++ L L ++F + H+ R N
Sbjct: 1543 ALDLGIRQLEIHGDSNLVIKQTQGIWRTRDEKLKPYHAYLDLLIDRFDVLRYIHLPRAEN 1602
Query: 291 SEADAQANMG 300
ADA A +
Sbjct: 1603 QFADALATLA 1612
>gi|108705670|gb|ABF93465.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 761
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + V R + ATNN+AEY L+ G
Sbjct: 170 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSRDVLRYMVRLDFRATNNMAEYEGLLAG 226
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 227 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 286
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 287 RDNAVAD 293
>gi|325968368|ref|YP_004244560.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
gi|323707571|gb|ADY01058.1| ribonuclease H [Vulcanisaeta moutnovskia 768-28]
Length = 191
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 180 FDGASKG-NPGQAGAGAVLRAEDGSVYRLREGVGIA-------TNNVAEYRALILGLKYA 231
FDGA + NPG G D + EG GIA TNNVAEY LI L+
Sbjct: 7 FDGACEPKNPGGVGTYGFAVYNDNDT--ISEGYGIACEPALNCTNNVAEYTGLIKALECL 64
Query: 232 LQKGY--KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
L Y I V GDS+LV Q+ G++ + ++L L ++A EL F+ ++ I R L
Sbjct: 65 LLHDYGESSIVVHGDSQLVIKQLTGIYNVRTEHLKPLFEKAHELLSHFR-VRLEWIPREL 123
Query: 290 NSEAD 294
NS+AD
Sbjct: 124 NSKAD 128
>gi|31432300|gb|AAP53950.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 2026
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N +P+ + ++FDG+ AGAG L + +G V R + ATNN+A
Sbjct: 1421 EASTNPSQLPHTAH-WVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMA 1477
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A+ G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1478 EYEGLLAGLRVAVGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1537
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1538 IELRHVPRRDNMIAD 1552
>gi|389573996|ref|ZP_10164065.1| ribonuclease H [Bacillus sp. M 2-6]
gi|388426185|gb|EIL84001.1| ribonuclease H [Bacillus sp. M 2-6]
Length = 131
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G L+ DG +GI +N+ AE+ ALI G+K ++KG + +
Sbjct: 8 DGASAGNPGPSGIGIFLKY-DGKAESFSIPLGIMSNHEAEFSALIEGMKICVEKGLRTVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS++V + N + E +L+ +F F I I N AD A
Sbjct: 67 FRTDSQVVDRAANAGFA-KNPSFRHFIDEMLQLQSEFDLFFIKWIPSKENQVADQLARKA 125
Query: 301 IYLKDG 306
I+L G
Sbjct: 126 IHLSKG 131
>gi|38567957|emb|CAE75910.1| OSJNBb0115I21.13 [Oryza sativa Japonica Group]
Length = 1938
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1341 LPHTAYR-VMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1397
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1398 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDEIELRHVPR 1457
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1458 RDNTIAD 1464
>gi|423397600|ref|ZP_17374801.1| hypothetical protein ICU_03294 [Bacillus cereus BAG2X1-1]
gi|423408458|ref|ZP_17385607.1| hypothetical protein ICY_03143 [Bacillus cereus BAG2X1-3]
gi|401649646|gb|EJS67224.1| hypothetical protein ICU_03294 [Bacillus cereus BAG2X1-1]
gi|401657548|gb|EJS75056.1| hypothetical protein ICY_03143 [Bacillus cereus BAG2X1-3]
Length = 128
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGASKGNPG +GAG ++ V +L +G +N+ AEY AL+ LK+ + Y +
Sbjct: 7 DGASKGNPGPSGAGVFIKGVQPPV-QLSLPLGTMSNHEAEYHALLAALKHCKEHNYSIVS 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+LV ++ + N+ A L +EA + + F F I I + N AD A
Sbjct: 66 FRTDSQLVERAVEKEYA-KNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124
Query: 301 I 301
I
Sbjct: 125 I 125
>gi|38346467|emb|CAE02120.2| OSJNBa0019G23.15 [Oryza sativa Japonica Group]
Length = 1938
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1341 LPHTAYR-VMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1397
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1398 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDEIELRHVPR 1457
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1458 RDNTIAD 1464
>gi|116309766|emb|CAH66808.1| OSIGBa0135C13.3 [Oryza sativa Indica Group]
Length = 1911
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 170 PYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGL 228
P + ++FDG+ AGAG L + +G V R + ATNN+AEY L+ GL
Sbjct: 1314 PSHSAHWVMQFDGSLSLQ--GAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGL 1371
Query: 229 KYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRN 288
+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1372 RVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDGMELRHVPRR 1431
Query: 289 LNSEAD 294
N AD
Sbjct: 1432 DNMVAD 1437
>gi|58531979|emb|CAE03621.3| OSJNBb0003B01.12 [Oryza sativa Japonica Group]
Length = 2030
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N+ +P+ + ++FDG+ AGAG L + G V R + ATNN+A
Sbjct: 1425 EASTNSSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1481
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1482 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDG 1541
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1542 IELRHVPRRDNMIAD 1556
>gi|348668072|gb|EGZ07896.1| hypothetical protein PHYSODRAFT_527265 [Phytophthora sojae]
Length = 148
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 211 VGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEA 270
V TNNVAEYRAL+ GL+Y++Q + + GDS L+ Q+Q ++L GL +
Sbjct: 4 VSKTTNNVAEYRALLNGLRYSVQHSMVGLHIVGDSNLILTQLQKRRVPRARHLQGLYGQC 63
Query: 271 KELKEKFQSFQINHILRNLNSEADAQANMGIYLKDG-QVEAE 311
+ L ++ +H LR+ N AD AN+ + K Q AE
Sbjct: 64 RVLADRLMVSSWSHHLRHFNKAADGLANIAMDTKQSKQATAE 105
>gi|116311008|emb|CAH67941.1| H0303A11-B0406H05.1 [Oryza sativa Indica Group]
Length = 688
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 115 SISINTQKRHFNEDNCWNTQSVPENYVAAAGSTSFSINTQRSHLNADSCLNTQSVPYNCY 174
+I ++ HF + +Q++ ++VA ++ ++ + +P+ +
Sbjct: 193 AIKLSEFDLHFEPRHAVKSQAL-ADFVAEWTPVPEPVSI------PEASTDPSQLPHTAH 245
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQ 233
++FDG+ AGAG L + G V R + ATNN+AEY L+ GL+ A
Sbjct: 246 -WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAG 302
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N A
Sbjct: 303 LGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIA 362
Query: 294 D 294
D
Sbjct: 363 D 363
>gi|16079258|ref|NP_390082.1| hypothetical protein BSU21990 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310113|ref|ZP_03591960.1| hypothetical protein Bsubs1_12101 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314435|ref|ZP_03596240.1| hypothetical protein BsubsN3_12022 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319357|ref|ZP_03600651.1| hypothetical protein BsubsJ_11948 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323633|ref|ZP_03604927.1| hypothetical protein BsubsS_12077 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402776455|ref|YP_006630399.1| RNA binding protein [Bacillus subtilis QB928]
gi|418032644|ref|ZP_12671127.1| hypothetical protein BSSC8_20710 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452915446|ref|ZP_21964072.1| 14.7 kDa ribonuclease H-like protein [Bacillus subtilis MB73/2]
gi|1730902|sp|P54162.1|RNHL_BACSU RecName: Full=14.7 kDa ribonuclease H-like protein
gi|1256624|gb|AAA96618.1| 41% identity over 125 aa to cell wall enzyme of E.faecalis;
putative [Bacillus subtilis subsp. subtilis str. 168]
gi|2634619|emb|CAB14117.1| putative RNA binding protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|351471507|gb|EHA31628.1| hypothetical protein BSSC8_20710 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481636|gb|AFQ58145.1| Putative RNA binding protein [Bacillus subtilis QB928]
gi|407959441|dbj|BAM52681.1| hypothetical protein BEST7613_3750 [Synechocystis sp. PCC 6803]
gi|407965017|dbj|BAM58256.1| hypothetical protein BEST7003_2055 [Bacillus subtilis BEST7003]
gi|452115794|gb|EME06190.1| 14.7 kDa ribonuclease H-like protein [Bacillus subtilis MB73/2]
Length = 132
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GKAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>gi|359488408|ref|XP_003633755.1| PREDICTED: uncharacterized protein LOC100852570 [Vitis vinifera]
Length = 2061
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1486 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1543
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1544 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1603
Query: 295 AQANMG 300
A A +
Sbjct: 1604 ALATLA 1609
>gi|359482809|ref|XP_003632844.1| PREDICTED: protein NYNRIN-like [Vitis vinifera]
Length = 1419
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 844 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 901
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 902 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVTRFDDLRYVHLPRAQNRFAD 961
Query: 295 AQANMG 300
A A +
Sbjct: 962 ALATLA 967
>gi|359479112|ref|XP_003632219.1| PREDICTED: uncharacterized protein LOC100853628 [Vitis vinifera]
Length = 1821
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1268 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1325
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1326 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1385
Query: 295 AQANMG 300
A A +
Sbjct: 1386 ALATLA 1391
>gi|147852549|emb|CAN82756.1| hypothetical protein VITISV_016014 [Vitis vinifera]
Length = 1853
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1289 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1346
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1347 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1406
Query: 295 AQANMG 300
A A +
Sbjct: 1407 ALATLA 1412
>gi|147775724|emb|CAN75930.1| hypothetical protein VITISV_038505 [Vitis vinifera]
Length = 2157
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1633 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1690
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1691 DIRQMEVFGDSNLVLRQIQGDWKTRDVKLRPYHAYLELLVARFDDLRYVHLPRAQNRFAD 1750
Query: 295 AQANMG 300
A A +
Sbjct: 1751 ALATLA 1756
>gi|108862622|gb|ABA97752.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1715
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 163 CLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEY 221
CL + +P+ Y FDG+S GQ G G VL + +G Y + TNN A+Y
Sbjct: 1384 CL-VEVIPWKIY-----FDGSS-CKEGQ-GIGVVLFSPNGMCYEASVRLEYYCTNNQAKY 1435
Query: 222 RALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQ 281
AL+ GL+ G KH+ GDS+LV ++ G +K + +L ++ F +F
Sbjct: 1436 NALLFGLQIMEMVGAKHVEAFGDSELVVQRVAGFYKCLDGSLNRYLDSCLDIIANFDNFT 1495
Query: 282 INHILRNLNSEAD--AQANMGIYLKDG 306
I HI R+ NS A+ AQ G +K G
Sbjct: 1496 IRHIARHDNSRANDLAQQASGYNVKKG 1522
>gi|9229988|dbj|BAB00646.1| unnamed protein product [Oryza sativa Japonica Group]
gi|11138069|dbj|BAB17742.1| GAG-POL precursor [Oryza sativa Japonica Group]
Length = 1473
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
++FDG+ AGAG L + G V R + ATNN+AEY+ L+ GL+ A G
Sbjct: 915 MQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGI 972
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 973 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVAD 1030
>gi|359481118|ref|XP_003632571.1| PREDICTED: uncharacterized protein LOC100854783 [Vitis vinifera]
Length = 2085
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV TNN+ EY A ILGL+ AL+
Sbjct: 1510 FDGAA--NHSGYGIGVLLVSPQGDHISRSVRLTFPDYYPTTNNIVEYEACILGLETALEL 1567
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
G + V GDS LV Q++G WK + L + L EKF+ + H+ R N D
Sbjct: 1568 GITQMDVLGDSDLVLRQVRGDWKTRDAKLKPYHAYLELLIEKFEELKYIHLPRAHNQFVD 1627
Query: 295 AQANMG 300
A A +
Sbjct: 1628 ALATLA 1633
>gi|50355728|gb|AAT75253.1| putative gag-pol precursor [Oryza sativa Japonica Group]
gi|108711464|gb|ABF99259.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1980
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
++FDG+ AGAG +L + G V R + ATNN+AEY L+ GL+ A G
Sbjct: 1406 MQFDGSLTLQ--GAGAGVILTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGI 1463
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS+LV QI ++ ++ + ++ + ++ F ++ H+ R N+ AD
Sbjct: 1464 RRLLVLGDSQLVVNQICKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNTIAD 1521
>gi|31430746|gb|AAP52619.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62733623|gb|AAX95740.1| RNase H, putative [Oryza sativa Japonica Group]
Length = 2025
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N +P+ Y ++FDG+ AGAG L + G V R + ATNN+A
Sbjct: 1420 EASTNPSQLPHTTY-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1476
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1477 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDG 1536
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1537 IELRHVPRRDNMIAD 1551
>gi|311068710|ref|YP_003973633.1| hypothetical protein BATR1942_08845 [Bacillus atrophaeus 1942]
gi|419820651|ref|ZP_14344260.1| ribonuclease H [Bacillus atrophaeus C89]
gi|310869227|gb|ADP32702.1| hypothetical protein BATR1942_08845 [Bacillus atrophaeus 1942]
gi|388475125|gb|EIM11839.1| ribonuclease H [Bacillus atrophaeus C89]
Length = 132
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G+ +G TN AE+ ALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGLSGIGIFIKYE-GTTESFSIPIGTYTNQEAEFLALIEGMKLCAERGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N++ E +LK F F I I N +AD A
Sbjct: 67 FRTDSDIV-ERAADLELVKNKSFQPFVDEIIQLKSAFPLFFIKWIPGRQNQKADHLAKEA 125
Query: 301 IYL 303
I L
Sbjct: 126 IRL 128
>gi|38605744|emb|CAE03836.3| OSJNBb0013J13.13 [Oryza sativa Japonica Group]
Length = 1836
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1239 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1295
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1296 LRVAAGLGIRRLLVLGDSQLVANQVCKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1355
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1356 RDNAVAD 1362
>gi|309811012|ref|ZP_07704810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
gi|308434976|gb|EFP58810.1| ribonuclease HI [Dermacoccus sp. Ellin185]
Length = 414
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 178 LEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG-VGIATNNVAEYRALILGLKYALQKG 235
+E DG S+GNPG AG G+++R A+ G++ R +G +NNVAEY LI GL+ +
Sbjct: 7 VEADGGSRGNPGVAGYGSLVRDADTGALLAERAAPLGKESNNVAEYTGLIEGLRAVVDHA 66
Query: 236 Y-KHIRVQGDSKLVCMQIQGLWKINNQNL 263
+ V+ DSKLV Q+ G WKI ++++
Sbjct: 67 PGAAVTVRMDSKLVVEQMSGRWKIKHEDM 95
>gi|38347663|emb|CAE04703.2| OSJNBa0041M06.5 [Oryza sativa Japonica Group]
Length = 1954
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 166 TQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRAL 224
+ +P+ Y FDG+S GQA G VL + +G Y+ + TNN AEY AL
Sbjct: 1373 VEVIPWKIY-----FDGSS-CKEGQA-IGVVLFSPNGMCYKASVRLEYYCTNNQAEYNAL 1425
Query: 225 ILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINH 284
+ GL+ G K++ GDS+LV Q+ G++K +++L ++ F +F I H
Sbjct: 1426 LFGLQVMEMVGAKYVEAFGDSELVVQQVAGVYKCLDRSLNRYLDSCLDIIANFDNFAIRH 1485
Query: 285 ILRNLNSEADAQA 297
I R+ NS A+ A
Sbjct: 1486 IARHDNSRANDLA 1498
>gi|350266369|ref|YP_004877676.1| RNase H [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349599256|gb|AEP87044.1| RNase H [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 151
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K ++GY+ +
Sbjct: 8 DGASAGNPGLSGIGIFIKHE-GKAESFSIPIGMHTNQEAEFLALIEGMKLCAKRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + + N+ +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERAAE-FEMVKNKTFHPYVEEIIRLKAAFPLFFIKWIPGKQNQKADHLAKAA 125
Query: 301 IYLKD 305
I L D
Sbjct: 126 IRLND 130
>gi|147778034|emb|CAN69736.1| hypothetical protein VITISV_041904 [Vitis vinifera]
Length = 1633
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDG-----SVYRLREGVGIATNNVAEYRALILGLKYALQK 234
FDGA+ N G G +L + G SV ATNN+ EY A ILGL+ AL+
Sbjct: 1125 FDGAA--NQSGYGIGVLLVSPQGDHIPRSVRLAFSDRHPATNNIVEYEACILGLETALEL 1182
Query: 235 GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS LV QIQG WK + L + L +F + H+ R N AD
Sbjct: 1183 DIRQMEVFGDSNLVLRQIQGDWKTKDVKLRPYHAYLELLVARFDDLRYVHLPRAHNRFAD 1242
Query: 295 AQANMG 300
A A +
Sbjct: 1243 ALATLA 1248
>gi|116310872|emb|CAH67813.1| OSIGBa0138H21-OSIGBa0138E01.4 [Oryza sativa Indica Group]
Length = 1949
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 161 DSCLNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVA 219
++ N+ +P+ + ++FDG+ AGAG L + G V R + ATNN+A
Sbjct: 1390 EASTNSSQLPHTTH-WVMQFDGSLSLQ--GAGAGVTLTSPTGDVLRYLVRLDFRATNNMA 1446
Query: 220 EYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQS 279
EY L+ GL+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F
Sbjct: 1447 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYRCSDPQMDAYVRQVRRMERHFDG 1506
Query: 280 FQINHILRNLNSEAD 294
++ H+ R N AD
Sbjct: 1507 IELRHVPRRDNVIAD 1521
>gi|147832838|emb|CAN70673.1| hypothetical protein VITISV_007184 [Vitis vinifera]
Length = 706
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%)
Query: 215 TNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK 274
TNN+ EY A ILGL+ L+ G + + V GDS LV QIQG WK + L + L
Sbjct: 407 TNNIVEYEACILGLETTLELGIRQMEVFGDSNLVLRQIQGDWKTKDAKLMPYHIYLELLV 466
Query: 275 EKFQSFQINHILRNLNSEADAQANMG 300
+F + H+ R N ADA A +
Sbjct: 467 GRFDDLRYVHLPRAQNRFADALATLA 492
>gi|336323259|ref|YP_004603226.1| ribonuclease H [Flexistipes sinusarabici DSM 4947]
gi|336106840|gb|AEI14658.1| ribonuclease H [Flexistipes sinusarabici DSM 4947]
Length = 146
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLREGVGIATNNVAEYRALILGLKYALQK----- 234
DGA KGNPG AG G V+ +DG VY +G TNN+AEY A++ +K Q+
Sbjct: 7 DGACKGNPGPAGIGFVIYDDDGEKVYECSTYIGEGTNNIAEYTAVLEAIKVIKQRLTEDT 66
Query: 235 -------GYKHIRVQGDSKLVCMQIQGLWKINNQNLAGL-CKEAKELKEKFQSFQINHIL 286
+ + DS+LV Q+ G++K+ + L + K +ELK +++ H+
Sbjct: 67 ANGNLTGKNEKVIFHLDSELVVRQLNGIYKVKDPTLKKIFFKILEELKG--MEYEVVHVP 124
Query: 287 RNLNSEAD 294
R+ N AD
Sbjct: 125 RDQNKVAD 132
>gi|23396194|gb|AAN31788.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31431648|gb|AAP53392.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2027
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGY 236
++FDG+ AGAG +L + +G V R + ATNN+AEY+ L+ GL+ A G
Sbjct: 1438 MQFDGSLSLQ--GAGAGVMLTSPNGDVLRYLVRLDFRATNNMAEYKGLLAGLRVAAGLGI 1495
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
+ + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R N AD
Sbjct: 1496 RRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMVAD 1553
>gi|292654009|ref|YP_003533907.1| ribonuclease H I [Haloferax volcanii DS2]
gi|448289084|ref|ZP_21480260.1| ribonuclease H [Haloferax volcanii DS2]
gi|291369994|gb|ADE02222.1| ribonuclease H I [Haloferax volcanii DS2]
gi|445584447|gb|ELY38767.1| ribonuclease H [Haloferax volcanii DS2]
Length = 216
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 9/132 (6%)
Query: 175 SCTLEFDGASKGNPGQAGAGAV-LRAEDGSVYRLREGVGIAT-NNVAEYRALILGLKYAL 232
S L DG+S+GNPG AGAGAV + +E+ + RL VG T NN AEY AL LGL L
Sbjct: 80 SFVLYVDGSSRGNPGPAGAGAVIMDSEEAQLARLGRPVGSRTGNNTAEYVALQLGLSELL 139
Query: 233 QKGYKH-IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK---EKFQSFQINHILRN 288
+ H + V+ DS V I+ +W N+ AG+ ++ + + + + H+ +
Sbjct: 140 SRYEPHSVDVRIDSMTV---IRDVWGGNDPTEAGVETYSESIAAALSEVPNHRYTHLADS 196
Query: 289 LNSEADAQANMG 300
+ ADA A +G
Sbjct: 197 DPNPADALATVG 208
>gi|32488015|emb|CAE02878.1| OSJNBb0022F23.15 [Oryza sativa Japonica Group]
Length = 1612
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V R + ATNN+AEY L+ G
Sbjct: 1226 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAG 1282
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 1283 LRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPR 1342
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 1343 RDNAVAD 1349
>gi|55167977|gb|AAV43845.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1207
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 169 VPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILG 227
+P+ Y ++FDG+ AGAG L + G V + + ATNN+AEY L+ G
Sbjct: 619 LPHTAY-WVMQFDGSLSLQ--GAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAG 675
Query: 228 LKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR 287
L+ A G + + V GDS+LV Q+ ++ ++ + ++ + ++ F ++ H+ R
Sbjct: 676 LRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPR 735
Query: 288 NLNSEAD 294
N+ AD
Sbjct: 736 RDNAVAD 742
>gi|147859431|emb|CAN83546.1| hypothetical protein VITISV_029989 [Vitis vinifera]
Length = 445
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 216 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKE 275
NNV EY A I GL+ L G + + +QGDS LV Q QG+W+ ++ L L +
Sbjct: 157 NNVVEYEACITGLETTLDLGVRQLEIQGDSNLVIQQTQGIWRTRDEKLKPYHAYLDLLVD 216
Query: 276 KFQSFQINHILRNLNSEADAQANMGIYLK 304
+F+ + H+ R N ADA A + ++
Sbjct: 217 RFEELRYIHLPRAENQFADALATLAFVIE 245
>gi|407002984|gb|EKE19622.1| ribonuclease H [uncultured bacterium]
Length = 142
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK----YALQKGY 236
DG S+GNPG A G + + ++ E +GI TNN AEY ALILGL+ + +
Sbjct: 9 DGGSRGNPGPAAVGVYIETLNK---KIGECIGIRTNNDAEYEALILGLQKVKHFIGKDKA 65
Query: 237 KHIRVQG--DSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEAD 294
K I V+ DS+LV Q+ +K+ + E L +F NHI R N AD
Sbjct: 66 KKIEVECFLDSELVVKQLNHEYKLKEPRIQQYFIEIWNLMLEFGKVSFNHIPREKNKVAD 125
Query: 295 AQAN 298
A N
Sbjct: 126 AMVN 129
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,860,165,986
Number of Sequences: 23463169
Number of extensions: 198941386
Number of successful extensions: 427746
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1933
Number of HSP's successfully gapped in prelim test: 1374
Number of HSP's that attempted gapping in prelim test: 424488
Number of HSP's gapped (non-prelim): 3474
length of query: 317
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 175
effective length of database: 9,027,425,369
effective search space: 1579799439575
effective search space used: 1579799439575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)