BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021120
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P64956|Y2253_MYCBO Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2253c PE=4 SV=1
Length = 364
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>sp|P64955|Y2228_MYCTU Uncharacterized protein Rv2228c/MT2287 OS=Mycobacterium
tuberculosis GN=Rv2228c PE=1 SV=1
Length = 364
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGS--VYRLREGVGIATNNVAEYRALILGLKYALQ 233
+E DG S+GNPG AG GAV+ D S + ++ +G ATNNVAEYR LI GL A++
Sbjct: 3 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVK 62
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
G V DSKLV Q+ G WK+ + +L L +A+ L +F+ + R N+ A
Sbjct: 63 LGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 122
Query: 294 DAQAN 298
D AN
Sbjct: 123 DRLAN 127
>sp|Q9HSF6|RNH_HALSA Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 /
JCM 11081 / NRC-1) GN=rnhA PE=1 SV=1
Length = 199
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 180 FDGASKGNPGQAGAGAVLRAEDGSVYRLREG---VGIATNNVAEYRALILGLKYALQKGY 236
FDGAS+GNPG A G VL + DG + + EG +G ATNN AEY ALI L+ A G+
Sbjct: 74 FDGASRGNPGPAAVGWVLVSGDGGI--VAEGGDTIGRATNNQAEYDALIAALEAAADFGF 131
Query: 237 KHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
I ++GDS+LV Q+ G W N+ +L A+EL F + I H+ R N ADA
Sbjct: 132 DDIELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADAL 191
Query: 297 AN 298
AN
Sbjct: 192 AN 193
>sp|P54162|RNHL_BACSU 14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain
168) GN=rnhA PE=1 SV=1
Length = 132
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGAS GNPG +G G ++ E G +G+ TN AE+ ALI G+K +GY+ +
Sbjct: 8 DGASAGNPGPSGIGIFIKHE-GKAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVS 66
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS +V + L + N +E LK F F I I N +AD A
Sbjct: 67 FRTDSDIVERATE-LEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEA 125
Query: 301 IYLKD 305
I L +
Sbjct: 126 IRLNE 130
>sp|F9VN79|RNH_SULTO Ribonuclease HI OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhA PE=1 SV=1
Length = 149
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 180 FDGASKG-NPGQ-AGAGAVLRAEDGSVYRLREGVGIA--------TNNVAEYRALILGLK 229
FDG + NPG A G V+ ++ + EG G+A TNNVAEY LI ++
Sbjct: 6 FDGLCEPKNPGGIATFGFVIYLDNRKI----EGYGLAEKPFSINSTNNVAEYSGLICLME 61
Query: 230 YALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNL 289
L+ G ++GDS+LV Q+ G +K+ + + L ++A ELK+K + I + R
Sbjct: 62 TMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLI-WVPREE 120
Query: 290 NSEAD 294
N EAD
Sbjct: 121 NKEAD 125
>sp|P36921|EBSB_ENTFA Cell wall enzyme EbsB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=ebsB PE=3 SV=2
Length = 135
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYAL--QKGYKH 238
D A+KGNPG++G G V D S +L +GI +N+ AE++ LI LK A+ + +
Sbjct: 7 DAATKGNPGESGGGIVYLT-DQSRQQLHVPLGIVSNHEAEFKVLIEALKKAIANEDNQQT 65
Query: 239 IRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQAN 298
+ + DSK+V I+ + N+ E ++L++ F I + + N AD A
Sbjct: 66 VLLHSDSKIVVQTIEKNYA-KNEKYQPYLAEYQQLEKNFPLLLIEWLPESQNKAADMLAR 124
Query: 299 MGI 301
+
Sbjct: 125 QAL 127
>sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana
GN=At1g65750 PE=3 SV=1
Length = 620
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSV---YRLREGVGIATNNVAEYRALILGLKYALQKGYK 237
DGAS+GNPG A AG VLR G+ + L +G + AE + GL +A +K
Sbjct: 465 DGASRGNPGLASAGGVLRDCTGAWCGGFSL--NIGRCSAPQAELWGVYYGLYFAWEKKVP 522
Query: 238 HIRVQGDSKLVCMQIQ-GLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQ 296
+ ++ DS+++ ++ G+ ++ L+ L + +K +I H+ R N AD
Sbjct: 523 RVELEVDSEVIVGFLKTGI--SDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGL 580
Query: 297 ANMGIYLKDG 306
AN L G
Sbjct: 581 ANYAFSLSLG 590
>sp|Q9ZLH3|RNH_HELPJ Ribonuclease HI OS=Helicobacter pylori (strain J99) GN=rnhA PE=3
SV=1
Length = 143
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+S GNPG G A+LR +D + G TNN E RAL LK + K HI
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKE-KTISGGENFTTNNRMELRALNEALK--ILKRPCHIT 65
Query: 241 VQGDSKLVCMQIQGLWKINNQ 261
+ DS+ VC I +W +N Q
Sbjct: 66 LYSDSQYVCQAIN-VWLVNWQ 85
>sp|B8HPS9|RNH_CYAP4 Ribonuclease H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rnhA PE=3 SV=1
Length = 157
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA GNPG G G V+ DGSV+ + TNN E +A I L++ G+ +
Sbjct: 11 DGACSGNPGPGGWGVVVYFGDGSVHEMGGAAAATTNNRMEMQAAIAALEFCQAAGHPPVI 70
Query: 241 VQGDSKLV 248
+ DS+ V
Sbjct: 71 LYTDSEYV 78
>sp|Q5PBQ8|RNH_ANAMM Ribonuclease H OS=Anaplasma marginale (strain St. Maries) GN=rnhA
PE=3 SV=2
Length = 154
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGL 228
DGA GNPG G GAVLR DG R+ G TNN E A+I+ L
Sbjct: 14 DGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMAL 61
>sp|Q17XJ7|RNH_HELAH Ribonuclease H OS=Helicobacter acinonychis (strain Sheeba) GN=rnhA
PE=3 SV=1
Length = 143
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+S GNPG G A+LR +D + G TNN E RAL LK + K HI
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKEKI-ISGGEKFTTNNRMELRALNEALK--ILKRPCHIT 65
Query: 241 VQGDSKLVCMQIQGLWKINNQ 261
+ DS+ VC I +W I Q
Sbjct: 66 LYSDSQYVCQAIN-VWLIGWQ 85
>sp|A4SXM6|RNH_POLSQ Ribonuclease H OS=Polynucleobacter necessarius subsp. asymbioticus
(strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=rnhA
PE=3 SV=1
Length = 154
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA KGNPG G GAVLR+ + + G + TNN E A+I LK Q+ +
Sbjct: 18 DGACKGNPGPGGWGAVLRSGSHEKH-IHGGEKLTTNNRMEICAVIFALKALKQRSS--VE 74
Query: 241 VQGDS----KLVCMQIQGL----WKINNQNLAGLCKEAKELKEKFQSFQIN-HILRNLNS 291
+ DS K V ++G WK +++ +EL I+ H +R N
Sbjct: 75 LWTDSQYVQKGVTEWLEGWKKRGWKTASKDPVKNADLWQELDTLLPDHDISWHWVRGHNG 134
Query: 292 E-----ADAQANMGI 301
ADA AN G+
Sbjct: 135 HPGNELADALANKGV 149
>sp|Q1CTK9|RNH_HELPH Ribonuclease H OS=Helicobacter pylori (strain HPAG1) GN=rnhA PE=3
SV=1
Length = 143
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+S GNPG G A+LR +D + G TNN E RAL LK + K I
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKE-KTISGGEEFTTNNRMELRALNEALK--ILKRPCRIT 65
Query: 241 VQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMG 300
+ DS+ VC I +W +N Q K+ F + + + + M
Sbjct: 66 LYSDSQYVCQAIN-VWLVNWQ------------KKNFSKVKNVDLWKEFLKVSKGHLIMA 112
Query: 301 IYLK--DGQVEAE-CSSFTK 317
+++K +G E E C S K
Sbjct: 113 VWIKGHNGHAENERCDSLAK 132
>sp|Q7VDY9|RNH_PROMA Ribonuclease H OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=rnhA PE=3 SV=1
Length = 165
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYK-HI 239
DGA GNPG G GA++R EDGSV TNN E A + LK H+
Sbjct: 14 DGACSGNPGPGGWGALIRFEDGSVQEFGGFETNTTNNRMELTAALEVLKKLRDFDRDPHL 73
Query: 240 RVQGDSKLVC 249
R++ DSK +
Sbjct: 74 RIRTDSKYLI 83
>sp|Q0K8W6|RNH_CUPNH Ribonuclease H OS=Cupriavidus necator (strain ATCC 17699 / H16 /
DSM 428 / Stanier 337) GN=rnhA PE=3 SV=1
Length = 145
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
T+ DGA KGNPG+ G GAVL A S + G TNN E A+I L+ AL++
Sbjct: 4 VTIYSDGACKGNPGRGGWGAVLVA-GASEKEMFGGEPNTTNNRMEMTAVIEALR-ALKRP 61
Query: 236 YKHIRVQGDSKLVCMQIQGL--------WKINNQNLAGLCKEAKELKEKFQSFQIN-HIL 286
+RV DS+ V I WK ++ +EL Q QI+ H +
Sbjct: 62 CV-VRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWV 120
Query: 287 RNLNSE-----ADAQANMGI 301
R N ADA AN G+
Sbjct: 121 RGHNGHPGNERADALANRGV 140
>sp|P56120|RNH_HELPY Ribonuclease HI OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnhA PE=3 SV=1
Length = 143
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+S GNPG G A+LR +D + G TNN E RAL LK + K I
Sbjct: 9 DGSSLGNPGPGGYAAILRYKDKE-KTISGGEEFTTNNRMELRALNEALK--ILKRPCRIT 65
Query: 241 VQGDSKLVCMQIQGLWKINNQ 261
+ DS+ VC I +W N Q
Sbjct: 66 LYSDSQYVCQAIN-VWLANWQ 85
>sp|Q8DM24|RNH_THEEB Ribonuclease H OS=Thermosynechococcus elongatus (strain BP-1)
GN=rnhA PE=3 SV=1
Length = 159
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G V+ DGSV+ L TNN E +A I LK
Sbjct: 10 DGACEGNPGPGGWGVVIYFTDGSVHELGGHHPATTNNRMELQAAIEALK 58
>sp|Q1LL89|RNH_RALME Ribonuclease H OS=Ralstonia metallidurans (strain CH34 / ATCC 43123
/ DSM 2839) GN=rnhA PE=3 SV=1
Length = 145
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
T+ DGA KGNPG G GAVL A G L G TNN E A+I L+ AL++
Sbjct: 4 VTIYSDGACKGNPGPGGWGAVLVA-GGHEKELFGGESPTTNNRMELMAVIEALR-ALKRP 61
Query: 236 YKHIRVQGDS----KLVCMQIQGL----WK------INNQNLAGLCKEAKELKEKFQSFQ 281
+ + DS K + I G WK + N +L EA++ + +
Sbjct: 62 CI-VNIYTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHWV 120
Query: 282 INHILRNLNSEADAQANMGI 301
H N ADA AN G+
Sbjct: 121 RGHNGHPGNERADALANRGV 140
>sp|Q2RPU6|RNH_RHORT Ribonuclease H OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB
8255) GN=rnhA PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA GNPG G G +LR D + L G TNN E A+I GL+ AL++ +
Sbjct: 19 DGACSGNPGPGGWGTILRWGD-TEKELWGGETPTTNNRMELMAVIRGLE-ALRRPVT-VT 75
Query: 241 VQGDSKLVCMQIQGL---WKINNQNLA 264
+ DS+ V I G WK N A
Sbjct: 76 IHTDSRYVHDGITGWIHGWKRNGWKTA 102
>sp|Q1GDG1|RNH_RUEST Ribonuclease H OS=Ruegeria sp. (strain TM1040) GN=rnhA PE=3 SV=1
Length = 157
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLRE---GVGIATNNVAEYRALILGLKYALQKGY 236
DGA GNPG G GA+LRA DG +V + RE G TNN E A I L+ +L +
Sbjct: 9 DGACSGNPGPGGWGALLRAMDGETVLKERELKGGEKETTNNRMELLAAIHALE-SLARPS 67
Query: 237 KHIRVQGDSKLVCMQIQGL---WKINNQNLAGLCKEAK--ELKEKFQSFQINH 284
K I V DS V + G WK N + K K EL ++ + Q H
Sbjct: 68 K-ITVVTDSAYVKNGVTGWIFGWKKNGWKTSA-KKPVKNVELWQRLDAAQSRH 118
>sp|Q31H49|RNH_THICR Ribonuclease H OS=Thiomicrospira crunogena (strain XCL-2) GN=rnhA
PE=3 SV=1
Length = 145
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI-ATNNVAEYRALILGLKYALQKGYKHI 239
DG +GNPG G GA+LR G V + +G + TNN E A I GLK AL++ K +
Sbjct: 9 DGGCRGNPGPGGWGALLRF--GGVEKELKGAELDTTNNRMELTAAIEGLK-ALKRPCK-V 64
Query: 240 RVQGDSKLV---CMQIQGLWKINNQNLA 264
+ DS+ V Q WK NN A
Sbjct: 65 TLTTDSQYVKNGITQWMTNWKKNNWKTA 92
>sp|P54164|YPEP_BACSU Uncharacterized protein YpeP OS=Bacillus subtilis (strain 168)
GN=ypeP PE=4 SV=2
Length = 226
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 166 TQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLR-AEDGSVYRLREG--VGIATNNVAEYR 222
T+ + T+ FDG+ AG G V+ + G+ +RLR+ + TNN AEY
Sbjct: 65 TEELAQEPDDITVYFDGSFDKESELAGLGIVIYYSLGGTRHRLRKNKSFRLKTNNEAEYA 124
Query: 223 ALILGLKYALQKGYKH--IRVQGDSKLVCMQIQGLW 256
AL ++ + G I ++GDS +V Q+ G W
Sbjct: 125 ALYEAIREVRELGASRNSITIKGDSLVVLNQLDGSW 160
>sp|Q3A827|RNH_PELCD Ribonuclease H OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnhA PE=3 SV=1
Length = 152
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYK 237
DGA GNPG G G +LR + R+RE G TNN E I GL+ AL + +
Sbjct: 13 DGACSGNPGPGGFGTLLRCGE----RVRELSGFDPETTNNRMELLGAIAGLE-ALTRPCR 67
Query: 238 HIRVQGDSKLVC 249
+R+ DS+ VC
Sbjct: 68 -VRLTTDSQYVC 78
>sp|Q82XV8|RNH_NITEU Ribonuclease H OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rnhA PE=3 SV=1
Length = 161
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKY--ALQKGYKH 238
DGA KGNPG G G L+ DG V G + TNN E A I L+ +L +
Sbjct: 15 DGACKGNPGIGGWGVCLKF-DGEVREFFGGEPVTTNNRMELLAAIRALQALESLPDTGQS 73
Query: 239 IRVQ--GDSKLVCMQIQGL---WKINNQNLA--------GLCKEAKELKEKFQ--SFQIN 283
+RVQ DS+ V I WK A L KE +L ++Q F +
Sbjct: 74 LRVQLHTDSQYVQKGISEWVHSWKKRGWLTADKKPVKNEALWKELDQLSRRYQVEWFWVR 133
Query: 284 -HILRNLNSEADAQANMGI 301
H + N AD AN G+
Sbjct: 134 GHNGHDGNERADMLANRGV 152
>sp|Q5LNJ2|RNH_RUEPO Ribonuclease H OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171
/ DSS-3) GN=rnhA PE=3 SV=1
Length = 155
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLRE---GVGIATNNVAEYRALILGLKYALQKGY 236
DGA GNPG G G +LRA +G +V + RE G TNN E A I L+ L++
Sbjct: 9 DGACSGNPGPGGWGVLLRAIEGETVLKERELCGGEAETTNNRMELLAAINALE-TLERPS 67
Query: 237 KHIRVQGDSKLVCMQIQGL---WKINNQNLAGLCKEAK--ELKEKFQSFQINH 284
K I V DS V + G WK N AG K K EL ++ Q H
Sbjct: 68 K-ITVVTDSAYVKNGVTGWIFGWKRNGWKTAG-KKPVKNVELWQRLDLAQARH 118
>sp|Q83EK3|RNH_COXBU Ribonuclease H OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=rnhA PE=3 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE-RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|A9NB52|RNH_COXBR Ribonuclease H OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=rnhA PE=3 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE-RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|Q8XZ91|RNH_RALSO Ribonuclease H OS=Ralstonia solanacearum (strain GMI1000) GN=rnhA
PE=3 SV=1
Length = 151
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235
T+ DGA KGNPG G G VL G L G + TNN E A+I + AL++
Sbjct: 4 VTVYSDGACKGNPGLGGWGTVL-VSGGHEKELFGGEAVTTNNRMELMAVIEAFR-ALKRP 61
Query: 236 YKHIRVQGDSKLVCMQIQGL---WK-----------INNQNLAGLCKEAKELKEKFQSFQ 281
+ ++V DS+ V I WK + N +L E E +
Sbjct: 62 CR-VKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120
Query: 282 INHILRNLNSEADAQANMGIYLKDGQVEA 310
H N ADA AN G+ + ++A
Sbjct: 121 KGHAGHPGNERADALANKGVEIARQAIQA 149
>sp|A6WWG8|RNH_OCHA4 Ribonuclease H OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM
6882 / NCTC 12168) GN=rnhA PE=3 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGL 228
DGA GNPG G GA+LR D +V L+ G TNN E A I L
Sbjct: 9 DGACSGNPGPGGWGAILRWND-NVKELKGGEADTTNNRMELMAAISAL 55
>sp|A9KGQ0|RNH_COXBN Ribonuclease H OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=rnhA PE=3 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE-RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|B6J1Y7|RNH_COXB2 Ribonuclease H OS=Coxiella burnetii (strain CbuG_Q212) GN=rnhA PE=3
SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE-RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|Q1QH30|RNH_NITHX Ribonuclease H OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnhA PE=3 SV=1
Length = 151
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 23/155 (14%)
Query: 164 LNTQSVPYNCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYR 222
+N+ ++P+ T+ DGA GNPG G GA+LR G + + L+ G TNN E
Sbjct: 1 MNSSALPH----VTIFTDGACSGNPGPGGWGAILRF--GEIEKELKGGEPHTTNNRMELL 54
Query: 223 ALILGLKYALQKGYKHIRVQGDSKLVCMQIQGL---WKINNQNLAG--LCKEA---KELK 274
A I L+ AL+K + + DS+ V I WK N A K A + L
Sbjct: 55 AAISALE-ALKKAAS-VDLTTDSQYVRQGITSWIHNWKRNGWRTADKKPVKNADLWQRLD 112
Query: 275 EKFQSFQIN------HILRNLNSEADAQANMGIYL 303
Q Q+ H + N AD A G+ L
Sbjct: 113 TALQPHQVRWHWIKGHAGHDENERADQLAREGVAL 147
>sp|Q28V43|RNH_JANSC Ribonuclease H OS=Jannaschia sp. (strain CCS1) GN=rnhA PE=3 SV=1
Length = 157
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 181 DGASKGNPGQAGAGAVLRAEDG-SVYRLRE---GVGIATNNVAEYRALILGLK 229
DGA GNPG G GA++RA+DG ++ + RE G TNN E A I L+
Sbjct: 9 DGACSGNPGPGGWGALMRAKDGDTILKERELKGGEADTTNNRMELLAAISALE 61
>sp|B6J5V1|RNH_COXB1 Ribonuclease H OS=Coxiella burnetii (strain CbuK_Q154) GN=rnhA PE=3
SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
DGA +GNPG G G +LR +L GV TNN E A I GLK
Sbjct: 14 DGACRGNPGPGGWGVLLRYNQHE-RQLHGGVANTTNNQMELTAAIEGLK 61
>sp|A4J7B3|RNH_DESRM Ribonuclease H OS=Desulfotomaculum reducens (strain MI-1) GN=rnhA
PE=3 SV=1
Length = 159
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYA 231
N T+ DGA GNPG G G V+ + G L G TNN E A I+GL+
Sbjct: 8 NLKEITMYTDGACSGNPGPGGYGVVMLYK-GHRKELSAGFRDTTNNRMELLATIVGLETL 66
Query: 232 LQKGYKHIRVQGDSKLVCMQIQGLW 256
+K ++ + DS+ V I+ W
Sbjct: 67 KEKC--NVNLYTDSQYVVNAIEKGW 89
>sp|Q55801|RNH_SYNY3 Ribonuclease HI OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=rnhA PE=3 SV=1
Length = 160
Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 26/56 (46%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKY 230
S TL DGA NPG G GAV+ DG L G + TNN E I L +
Sbjct: 7 SVTLYTDGACSMNPGPGGYGAVILYGDGRREELSAGYKMTTNNRMEIMGAIAALSH 62
>sp|Q2GDA1|RNH_NEOSM Ribonuclease H OS=Neorickettsia sennetsu (strain Miyayama) GN=rnhA
PE=3 SV=1
Length = 151
Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 181 DGASKGNPGQAGAGAVL--RAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKH 238
DGA GNPG G AV+ R + + RE +TNN E A+I L+ QKG K
Sbjct: 9 DGACLGNPGPGGWAAVIIQRGTNEKIISGRE--ADSTNNKMELLAVIKALESFEQKG-KR 65
Query: 239 IRVQGDS----KLVCMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEA 293
+ V DS K + I+ K +N +G + KE+ + H +R L +A
Sbjct: 66 VTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWLWVKA 124
>sp|Q46Z81|RNH_CUPPJ Ribonuclease H OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=rnhA PE=3 SV=1
Length = 145
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA KGNPG+ G GAVL A L G TNN E A+I L+ AL++ ++
Sbjct: 9 DGACKGNPGRGGWGAVLVAGTNE-KELFGGEANTTNNRMEMTAVIEALR-ALKRPCT-VQ 65
Query: 241 VQGDSKLVCMQIQGL--------WKINNQNLAGLCKEAKELKEKFQSFQIN-HILRNLNS 291
V DS+ V I WK ++ +EL Q +I H +R N
Sbjct: 66 VYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLVQPHKITWHWVRGHNG 125
Query: 292 E-----ADAQANMGI 301
ADA AN G+
Sbjct: 126 HPGNERADALANRGV 140
>sp|Q9KEI9|RNH1_BACHD Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnhA PE=1 SV=1
Length = 196
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 177 TLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKY 230
+L D S+GNPG V + G V RE + I TNN+ E+ A++ GL+Y
Sbjct: 67 SLSVDVGSQGNPGIVEYKGV-DTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRY 119
>sp|A5EAL2|RNH_BRASB Ribonuclease H OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=rnhA PE=3 SV=1
Length = 154
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
+ ++ DGA GNPG G GA+LR D L+ G TNN E A I L+ AL+K
Sbjct: 6 TVSIYTDGACSGNPGPGGWGAILRFGD-KEKELKGGEPHTTNNRMELMAAISALE-ALKK 63
Query: 235 GYKHIRVQGDSKLVCMQIQGL---WKINNQNLA 264
+ + + DS+ V I G WK N A
Sbjct: 64 SCQ-VELYTDSQYVRQGITGWIHGWKRNGWKTA 95
>sp|A4FMU3|RNH_SACEN Ribonuclease H OS=Saccharopolyspora erythraea (strain NRRL 23338)
GN=rnhA PE=3 SV=1
Length = 155
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 178 LEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVG---IATNNVAEYRALILGLKYALQK 234
L DGA GNPG G G VLR + RE G TNN E A+I GL AL +
Sbjct: 13 LYTDGACSGNPGPGGWGVVLRYG----HHEREMYGGETATTNNKMELTAVIEGLA-ALTR 67
Query: 235 GYKHIRVQGDSKLVCMQI 252
+R+ DS V I
Sbjct: 68 PVPLVRIHTDSTYVLKGI 85
>sp|Q0AMI4|RNH_MARMM Ribonuclease H OS=Maricaulis maris (strain MCS10) GN=rnhA PE=3 SV=1
Length = 149
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQK 234
+ T+ DGA GNPG G GA+L +G L+ G TNN E A I L+ AL+K
Sbjct: 3 TITIHTDGACSGNPGPGGWGAILEW-NGHRKELKGGEADTTNNRMEMMAAIQALE-ALRK 60
Query: 235 GYKHIRVQGDS 245
+ + + DS
Sbjct: 61 ADRSVILITDS 71
>sp|Q5QZL3|RNH_IDILO Ribonuclease H OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnhA PE=3 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 172 NCYSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLK 229
N + L DG+ GNPG G GAVL E G ++ L +G + TNN E A I GL+
Sbjct: 3 NSKTVHLYTDGSCLGNPGPGGYGAVL--EYGKHHKELSQGYRLTTNNRMEMLATIAGLR 59
>sp|A4Z216|RNH_BRASO Ribonuclease H OS=Bradyrhizobium sp. (strain ORS278) GN=rnhA PE=3
SV=1
Length = 154
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DGA GNPG G GA+LR D L+ G TNN E A I L+ AL+K + +
Sbjct: 12 DGACSGNPGPGGWGAILRFGD-KEKELKGGEPHTTNNRMELMAAISALE-ALKKSCQ-VE 68
Query: 241 VQGDSKLVCMQIQGL---WKINNQNLA 264
+ DS+ V I G WK N A
Sbjct: 69 LYTDSQYVRQGITGWIHGWKRNGWKTA 95
>sp|Q07762|RNH1_CRIFA Ribonuclease H OS=Crithidia fasciculata GN=RNH1 PE=3 SV=1
Length = 494
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 5 KDAFYVVRKGDVVGIYKTLSDCQLQA-GFSVRDPSLTVYKGYGLSKEAEEYLASHGLKS 62
K +FYVV G GIY T C Q GFS VYK + EA YL +H +S
Sbjct: 153 KPSFYVVAVGRQRGIYSTWDQCSEQVKGFSG-----AVYKSFRTLSEARAYLTAHPARS 206
>sp|A8LLC1|RNH_DINSH Ribonuclease H OS=Dinoroseobacter shibae (strain DFL 12) GN=rnhA
PE=3 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVY----RLREGVGIATNNVAEYRALILGLKYALQKGY 236
DGA GNPG G GA+L A DG L+ G TNN E A I L+ AL++
Sbjct: 9 DGACSGNPGPGGWGALLIARDGDTVVKERALKGGEAETTNNRMELLAAIHALE-ALERPA 67
Query: 237 KHIRVQGDSKLVCMQIQGL---WKIN-----------NQNLAGLCKEAKELKEKFQSFQI 282
+ + V DS V + G WK N N++L A+ E +
Sbjct: 68 R-LTVVTDSAYVKGGVTGWIHGWKRNGWKTSTKKPVKNEDLWRRLDAAQARHEVQWEWVK 126
Query: 283 NHILRNLNSEADAQANMGIY-LKDGQVEA 310
H N ADA A G+ K G+ +A
Sbjct: 127 GHAGHPENERADALAREGMAPFKPGKSKA 155
>sp|A3MZE1|RNH_ACTP2 Ribonuclease H OS=Actinobacillus pleuropneumoniae serotype 5b
(strain L20) GN=rnhA PE=3 SV=1
Length = 153
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+ GNPG+ G G VLR +G ++ +G TNN E RA+I L A+ K ++
Sbjct: 9 DGSCLGNPGKGGIGIVLRY-NGHEKQVSKGYLQTTNNRMELRAVIEAL--AMLKEPCQVQ 65
Query: 241 VQGDSKLVCMQIQGL---WKINNQNLA 264
+ DS+ + I WK NN A
Sbjct: 66 LNSDSQYMKDGITKWIFSWKKNNWKTA 92
>sp|Q1QW64|RNH_CHRSD Ribonuclease H OS=Chromohalobacter salexigens (strain DSM 3043 /
ATCC BAA-138 / NCIMB 13768) GN=rnhA PE=3 SV=1
Length = 164
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLK 229
T+ DGA +GNPG G GAVLR L+ G + TNN E A I L+
Sbjct: 13 VTIYTDGACRGNPGPGGWGAVLRYGQHEKT-LKGGEAVTTNNRMELMAAIQALR 65
>sp|B4EUG3|RNH_PROMH Ribonuclease H OS=Proteus mirabilis (strain HI4320) GN=rnhA PE=3
SV=1
Length = 159
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGL-------KYALQ 233
DG+ GNPG G GA+LR + L EG + TNN E A I+ L K L
Sbjct: 10 DGSCLGNPGPGGYGAILRYQQHE-KTLSEGFFMTTNNRMELLAAIVALEALKFPCKITLT 68
Query: 234 KGYKHIRVQGDSKLVCMQIQGLWK 257
+++R QG +K + + W+
Sbjct: 69 TDSQYVR-QGITKWIHSWKKRQWR 91
>sp|B8DIU7|RNH_DESVM Ribonuclease H OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM
19637) GN=rnhA PE=3 SV=1
Length = 156
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 181 DGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIR 240
DG+ GNPG G AVLR +GS L G + TNN E A+I L AL K +
Sbjct: 11 DGSCLGNPGPGGWAAVLRC-NGSERELSGGFALTTNNRMEILAVIEAL--ALLKEPCGVD 67
Query: 241 VQGDSKLVCMQIQGLW 256
+ DS+ V ++ W
Sbjct: 68 LYTDSQYVRNAVEKKW 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,161,149
Number of Sequences: 539616
Number of extensions: 4761568
Number of successful extensions: 11138
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 11080
Number of HSP's gapped (non-prelim): 302
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)