Query 021120
Match_columns 317
No_of_seqs 343 out of 1704
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 100.0 1.1E-28 3.8E-33 203.7 15.9 130 175-304 3-134 (141)
2 3u3g_D Ribonuclease H, RNAse H 100.0 8.7E-29 3E-33 203.7 14.4 129 175-303 3-137 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.9 1.3E-27 4.5E-32 199.8 12.0 131 176-308 2-139 (149)
4 3h08_A RNH (ribonuclease H); R 99.9 4.4E-25 1.5E-29 183.9 9.8 127 174-304 3-145 (146)
5 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.6E-24 8.9E-29 180.9 13.5 129 174-305 6-153 (154)
6 2lsn_A Reverse transcriptase; 99.9 4.7E-24 1.6E-28 181.3 12.9 128 175-303 7-163 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 3.6E-24 1.2E-28 180.9 11.6 126 174-303 5-145 (158)
8 1jl1_A Ribonuclease HI; RNAse 99.9 2.5E-24 8.7E-29 181.3 10.6 127 175-305 4-145 (155)
9 1ril_A Ribonuclease H; hydrola 99.9 1.8E-24 6.1E-29 184.3 8.2 128 174-305 7-150 (166)
10 3qio_A GAG-POL polyprotein; RN 99.9 2.3E-23 7.8E-28 174.5 13.6 122 174-303 11-147 (150)
11 2kq2_A Ribonuclease H-related 99.9 1E-24 3.6E-29 182.1 4.6 129 174-307 5-141 (147)
12 3bsu_A Ribonuclease H1, RNAse 99.9 1.4E-23 4.6E-28 144.0 5.2 50 4-57 1-50 (53)
13 3p1g_A Xenotropic murine leuke 99.9 1.7E-22 5.7E-27 171.8 12.5 123 175-304 23-157 (165)
14 1qhk_A RNAse HI, protein (ribo 99.9 9E-24 3.1E-28 141.3 2.9 47 6-56 1-47 (47)
15 1zbf_A Ribonuclease H-related 99.8 1.4E-21 4.8E-26 161.9 4.1 119 174-294 10-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.8 1.5E-19 5.1E-24 147.4 8.8 97 176-274 6-106 (134)
17 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.4E-18 4.8E-23 173.9 12.1 117 174-301 435-555 (555)
18 2zd1_A Reverse transcriptase/r 99.7 5.5E-18 1.9E-22 169.6 7.7 116 174-300 438-557 (557)
19 3ugs_B Undecaprenyl pyrophosph 82.8 4.9 0.00017 34.9 8.3 85 196-288 12-102 (225)
20 2zd1_B P51 RT; P51/P66, hetero 74.7 7.9 0.00027 36.7 7.8 79 174-259 323-409 (428)
21 4h8e_A Undecaprenyl pyrophosph 73.6 1.8 6.3E-05 38.3 2.8 44 212-262 45-88 (256)
22 2vg0_A Short-chain Z-isoprenyl 67.5 4.5 0.00015 35.2 3.9 65 216-287 28-96 (227)
23 3tue_A Tryparedoxin peroxidase 58.6 24 0.00083 30.2 6.9 46 190-235 145-190 (219)
24 3sbc_A Peroxiredoxin TSA1; alp 55.7 28 0.00097 29.7 6.8 45 191-235 142-186 (216)
25 2vg3_A Undecaprenyl pyrophosph 54.5 7.9 0.00027 34.8 3.2 30 216-245 80-109 (284)
26 1rw3_A POL polyprotein; RNA an 53.9 1.2 4E-05 42.7 -2.6 72 175-254 346-427 (455)
27 3sgv_B Undecaprenyl pyrophosph 52.9 5.4 0.00019 35.2 1.8 34 212-245 38-71 (253)
28 2d2r_A Undecaprenyl pyrophosph 46.5 10 0.00035 33.2 2.6 30 216-245 40-69 (245)
29 2lsn_A Reverse transcriptase; 45.2 7.4 0.00025 31.9 1.3 22 213-234 49-70 (165)
30 1f75_A Undecaprenyl pyrophosph 34.7 11 0.00037 33.2 0.8 30 216-245 45-74 (249)
31 3qas_B Undecaprenyl pyrophosph 32.7 10 0.00035 33.4 0.3 30 216-245 42-71 (253)
32 2z3g_A Blasticidin-S deaminase 29.6 80 0.0027 24.5 5.0 52 192-245 28-80 (130)
33 2doe_A Transcription elongatio 28.4 40 0.0014 24.1 2.8 35 17-57 32-66 (83)
34 1uwz_A Cytidine deaminase; CDD 25.9 1.3E+02 0.0043 23.5 5.7 52 192-245 25-79 (136)
35 2fr5_A Cytidine deaminase; tet 23.6 1.2E+02 0.0041 24.0 5.1 52 192-245 37-91 (146)
36 2lju_A Putative oxidoreductase 22.9 14 0.00048 28.2 -0.6 18 43-60 64-81 (108)
37 1xcc_A 1-Cys peroxiredoxin; un 20.7 2E+02 0.0068 23.9 6.3 41 194-235 130-171 (220)
38 2v2g_A Peroxiredoxin 6; oxidor 20.6 2E+02 0.0067 24.3 6.3 41 194-235 129-170 (233)
39 3a2v_A Probable peroxiredoxin; 20.3 2E+02 0.0067 24.7 6.3 41 194-235 126-167 (249)
40 2jya_A AGR_C_3324P, uncharacte 20.2 38 0.0013 25.6 1.4 18 43-60 56-73 (106)
41 3tjj_A Peroxiredoxin-4; thiore 20.0 1.9E+02 0.0064 24.8 6.1 42 194-235 184-225 (254)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.1e-28 Score=203.74 Aligned_cols=130 Identities=40% Similarity=0.577 Sum_probs=119.4
Q ss_pred eEEEEEeCcccCCCCceEEEEEEEcCC-CCE-EEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHH
Q 021120 175 SCTLEFDGASKGNPGQAGAGAVLRAED-GSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 252 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~aG~Gvvi~~~~-g~~-~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v 252 (317)
.++|||||||+++++.+|+|+++++++ +.. ..++...+..|||+||++|+++||+++.+.+.++|.|+|||++|++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 589999999999999999999999875 554 456666678999999999999999999999999999999999999999
Q ss_pred hcccccCChhHHHHHHHHHHHhhcCCcEEEEEeCCCccHHHHHHHHHhhcCC
Q 021120 253 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 304 (317)
Q Consensus 253 ~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~~~~Ne~AD~LAk~A~~~~ 304 (317)
++.|+.+++.+..++++++.++.+|..|.+.||++++|+.||+||+.|++..
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAA 134 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHh
Confidence 9999999988999999999999999999999999999999999999998753
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.96 E-value=8.7e-29 Score=203.68 Aligned_cols=129 Identities=34% Similarity=0.480 Sum_probs=119.2
Q ss_pred eEEEEEeCcccCCCCceEEEEEEEcCCCCE-EEEeeccccccchHHHHHHHHHHHHHHHHcCCc----EEEEEeChHHHH
Q 021120 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSV-YRLREGVGIATNNVAEYRALILGLKYALQKGYK----HIRVQGDSKLVC 249 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~-~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~----~i~I~tDS~~vi 249 (317)
.++|||||||++|++.+|+|+++.+++|.. ..+++..+..|||+||++|+++||+++.+.+.+ +|.|+|||++|+
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 589999999999999999999999887776 466666677899999999999999999999888 999999999999
Q ss_pred HHHhcccccCChhHHHHHHHHHHH-hhcCCcEEEEEeCCCccHHHHHHHHHhhcC
Q 021120 250 MQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNSEADAQANMGIYL 303 (317)
Q Consensus 250 ~~v~~~w~~~~~~~~~l~~~i~~l-~~~f~~v~~~Hv~~~~Ne~AD~LAk~A~~~ 303 (317)
+++++.|+.++..+..+++++..+ +.+|..|.+.||++++|+.||+||++|++.
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDK 137 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHh
Confidence 999999998888889999999999 999999999999999999999999999865
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.95 E-value=1.3e-27 Score=199.76 Aligned_cols=131 Identities=31% Similarity=0.365 Sum_probs=115.5
Q ss_pred EEEEEeCccc-CCCCceEE-EEEEEcCCCCE-EEEeeccc----cccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHH
Q 021120 176 CTLEFDGASK-GNPGQAGA-GAVLRAEDGSV-YRLREGVG----IATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 248 (317)
Q Consensus 176 ~~iytDGS~~-~n~~~aG~-Gvvi~~~~g~~-~~~s~~~~----~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~v 248 (317)
++|||||||+ +|++.+|+ |+++++ +|.. .......+ ..|||+||++|+++||+.+.+.+.++|.|+|||++|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV 80 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHH
Confidence 5899999999 79899995 999998 6666 33333333 789999999999999999999999999999999999
Q ss_pred HHHHhcccccCChhHHHHHHHHHHHhhcCCcEEEEEeCCCccHHHHHHHHHhhcCCCCcc
Q 021120 249 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQV 308 (317)
Q Consensus 249 i~~v~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~~~~Ne~AD~LAk~A~~~~~~~v 308 (317)
++++++.|+.+++.+.+|++++..++.+| .|.+.||++++|+.||+||+.|+..+....
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~~~~ 139 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVRRGK 139 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhccCc
Confidence 99999999988888999999999999988 599999999999999999999998764433
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.92 E-value=4.4e-25 Score=183.92 Aligned_cols=127 Identities=26% Similarity=0.280 Sum_probs=102.8
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
..++|||||||++|++.+|+|+++.+.+ ....+++..+..|||+|||+|++.||+.+.+ .++|.|+|||++|++.++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGS-SRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETT-EEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECC-eeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 3589999999999999999999998754 3456666667899999999999999999865 479999999999999988
Q ss_pred ccc----c-----cCC---hhHHHHHHHHHHHhhcCCcEEEEEe----CCCccHHHHHHHHHhhcCC
Q 021120 254 GLW----K-----INN---QNLAGLCKEAKELKEKFQSFQINHI----LRNLNSEADAQANMGIYLK 304 (317)
Q Consensus 254 ~~w----~-----~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv----~~~~Ne~AD~LAk~A~~~~ 304 (317)
+.| + ... ..+++|++++..++..+ .|.|.|| ++++|+.||+||++|+...
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 743 2 222 25688999999888775 3555555 5999999999999998754
No 5
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=2.6e-24 Score=180.91 Aligned_cols=129 Identities=20% Similarity=0.148 Sum_probs=105.5
Q ss_pred ceEEEEEeCcccCCCCc---eEEEEEEEcCCCCEEEEeecc-ccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHH
Q 021120 174 YSCTLEFDGASKGNPGQ---AGAGAVLRAEDGSVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVC 249 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~---aG~Gvvi~~~~g~~~~~s~~~-~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi 249 (317)
+.++|||||||.+|++. +|+|+++.+.+... ++..+ +..|||+|||+|+++||+++.+.+.++|.|+|||++|+
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~--~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLN--VGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTC--EEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCcee--EEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 47899999999988753 89999998654332 33343 46899999999999999999999889999999999999
Q ss_pred HHHhc--------ccccCC---hhHHHHHHHHHHHhhcCCcEEEEEeCC----CccHHHHHHHHHhhcCCC
Q 021120 250 MQIQG--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMGIYLKD 305 (317)
Q Consensus 250 ~~v~~--------~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~~----~~Ne~AD~LAk~A~~~~~ 305 (317)
+.+++ +|+... ..+.+||++|..++..+ .|.|.||++ ++|+.||+||++|+..+.
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~-~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~~ 153 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-DIQWMHVPGHSGFIGNEEADRLAREGAKQSE 153 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC-EEEEEECCTTSSCHHHHHHHHHHHHHHTCC-
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC-ceEEEEccCCCCCHhHHHHHHHHHHHHHhcc
Confidence 99986 455443 25689999999988876 488888875 679999999999998753
No 6
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.91 E-value=4.7e-24 Score=181.27 Aligned_cols=128 Identities=23% Similarity=0.177 Sum_probs=100.5
Q ss_pred eEEEEEeCcccCCCCc-----eEEEEEEEcCCCCE---EEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChH
Q 021120 175 SCTLEFDGASKGNPGQ-----AGAGAVLRAEDGSV---YRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSK 246 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~-----aG~Gvvi~~~~g~~---~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~ 246 (317)
.++|||||||++||++ +|||+++...+.+. ..........|+++||+.||..||+.+++.+ .+|.|+|||+
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~ 85 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSF 85 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChH
Confidence 4799999999999876 99999998654332 2222234567888899999999998888877 4799999999
Q ss_pred HHHHHHhc---c-----cccCC---hhHHHHHHHHHHHhhcCCcEEEEEeC----------CCccHHHHHHHHHhhcC
Q 021120 247 LVCMQIQG---L-----WKINN---QNLAGLCKEAKELKEKFQSFQINHIL----------RNLNSEADAQANMGIYL 303 (317)
Q Consensus 247 ~vi~~v~~---~-----w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~----------~~~Ne~AD~LAk~A~~~ 303 (317)
||++++++ . |+... -.+.+||+++..++..+..|.|.||. +++|+.||+||++|+..
T Consensus 86 Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 86 YVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 99999985 3 43322 15689999999988877788888886 34699999999999854
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.91 E-value=3.6e-24 Score=180.94 Aligned_cols=126 Identities=23% Similarity=0.282 Sum_probs=104.3
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
..++|||||||++|++.+|+|+++.+. +....+++..+..|||+|||+|++.||+.+.+. ++|.|+|||++|++.++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~-~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYK-GHTKEMSDGFSLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEET-TEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEEC-CEEEEEecCcCCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHH
Confidence 358999999999999999999999874 344456666677899999999999999988543 78999999999999888
Q ss_pred c--------ccccCC---hhHHHHHHHHHHHhhcCCcEEEEEeC----CCccHHHHHHHHHhhcC
Q 021120 254 G--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYL 303 (317)
Q Consensus 254 ~--------~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~----~~~Ne~AD~LAk~A~~~ 303 (317)
+ +|+... ..+.+||+++..++..+ .|.|.||+ +++|+.||+||+.|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 7 554432 14678999999888764 67777776 88999999999999987
No 8
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.91 E-value=2.5e-24 Score=181.29 Aligned_cols=127 Identities=23% Similarity=0.276 Sum_probs=104.5
Q ss_pred eEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhc
Q 021120 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 254 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~ 254 (317)
.++|||||||++|++.+|+|+++...+ ....+++..+..|||+|||+|++.||+.+.+. ++|.|+|||++|++.+++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~-~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETT-EEEEEEEEEEEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECC-eEEEEecCCCCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHH
Confidence 479999999999998999999998754 33455666677899999999999999998753 689999999999999997
Q ss_pred --------ccccCCh---hHHHHHHHHHHHhhcCCcEEEEEeC----CCccHHHHHHHHHhhcCCC
Q 021120 255 --------LWKINNQ---NLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLKD 305 (317)
Q Consensus 255 --------~w~~~~~---~~~~l~~~i~~l~~~f~~v~~~Hv~----~~~Ne~AD~LAk~A~~~~~ 305 (317)
+|+.... .+.+|++++..++..+ .|.|.||+ +++|+.||+||+.|+..+.
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 4443221 4578999999887764 67777776 8899999999999998764
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.90 E-value=1.8e-24 Score=184.31 Aligned_cols=128 Identities=24% Similarity=0.239 Sum_probs=102.7
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
..++|||||||++|++.+|+|+++.+.++. ..+++..+..|||+|||+|++.||+.+.+. .+|.|+|||++|++.++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~-~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHE-KLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBC-CEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEE-EEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 357999999999998999999999875433 345555567899999999999999987654 48999999999999999
Q ss_pred c---------ccccCCh---hHHHHHHHHHHHhhcCCcEEEE----EeCCCccHHHHHHHHHhhcCCC
Q 021120 254 G---------LWKINNQ---NLAGLCKEAKELKEKFQSFQIN----HILRNLNSEADAQANMGIYLKD 305 (317)
Q Consensus 254 ~---------~w~~~~~---~~~~l~~~i~~l~~~f~~v~~~----Hv~~~~Ne~AD~LAk~A~~~~~ 305 (317)
+ +|+.... .+.+||+++..++..+ .|.|. |+++++|+.||+||++|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 3544321 4578999998887764 55555 4559999999999999998764
No 10
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.90 E-value=2.3e-23 Score=174.54 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=98.1
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
+.++|||||||++|++.+|+|+++.++ ....+ ..+..|||+|||+|++.||+.+ + ++|.|+|||++|++.++
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~~~--~~~~~--~~~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTNRG--RQKVV--TLTDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIIT 82 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTS--CEEEE--EESSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHH
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEEcC--CEEEE--eCCCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHH
Confidence 468999999999999999999998753 33222 3468999999999999999974 3 78999999999999988
Q ss_pred c---ccccC-----Ch---hHHHHHHHHHHHhhcCCcEEEEEeCCC----ccHHHHHHHHHhhcC
Q 021120 254 G---LWKIN-----NQ---NLAGLCKEAKELKEKFQSFQINHILRN----LNSEADAQANMGIYL 303 (317)
Q Consensus 254 ~---~w~~~-----~~---~~~~l~~~i~~l~~~f~~v~~~Hv~~~----~Ne~AD~LAk~A~~~ 303 (317)
+ .|+.+ .. .+++||+++..++.++..|.+.||+++ +|+.||+||++|++.
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 6 23332 21 568899999887777888888888766 599999999999875
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.90 E-value=1e-24 Score=182.14 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=100.8
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEee-cc--c---cccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHH
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLRE-GV--G---IATNNVAEYRALILGLKYALQKGYKHIRVQGDSKL 247 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~-~~--~---~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~ 247 (317)
+.++|||||||++ +.+|||+++.. +|....+++ .. + ..|||+|||+|++.||+++++.+. +|.|+|||+.
T Consensus 5 ~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~ 80 (147)
T 2kq2_A 5 TEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAG 80 (147)
T ss_dssp SCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCST
T ss_pred CeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHH
Confidence 4579999999987 78999999987 455544544 22 2 469999999999999999999888 9999999999
Q ss_pred HHHHHhcccccCChhHHHHHHHHHHHh--hcCCcEEEEEeCCCccHHHHHHHHHhhcCCCCc
Q 021120 248 VCMQIQGLWKINNQNLAGLCKEAKELK--EKFQSFQINHILRNLNSEADAQANMGIYLKDGQ 307 (317)
Q Consensus 248 vi~~v~~~w~~~~~~~~~l~~~i~~l~--~~f~~v~~~Hv~~~~Ne~AD~LAk~A~~~~~~~ 307 (317)
|.+|+.+.|+.+.+....+.+.++.|. ..|.+| .+|.++++|+.||+||++|+......
T Consensus 81 i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV-~gH~g~~~Ne~AD~LA~~a~~~~~~~ 141 (147)
T 2kq2_A 81 IAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKV-KAHSGNEFNDYVDMKAKSALGIRDLE 141 (147)
T ss_dssp HHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCC-CCCCCCHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEe-cCcCCCcchHHHHHHHHHHHhccccc
Confidence 999999999888754433333333332 234444 48888999999999999999876543
No 12
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.4e-23 Score=144.02 Aligned_cols=50 Identities=24% Similarity=0.508 Sum_probs=46.9
Q ss_pred CCCceEEEEeCCcccccCChHHHHHHhccccCCCCCceeccCCCHHHHHHHHHh
Q 021120 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLAS 57 (317)
Q Consensus 4 ~~~k~yav~~g~~~Gi~~~w~~~q~qv~~~~~~~~~a~yk~f~~~~ea~~f~~~ 57 (317)
|.++||||++||+||||+||+||++||. ||+||.||+|.|++||++||.+
T Consensus 1 g~~kyYaV~~G~~~GIy~sW~ec~~qV~----g~~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 1 GSHMFYAVRRGRKTGVFLTWNECRAQVD----RFPAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp --CCEEEEEESSSCEEESSHHHHHHHHT----TCTTCEEEEESSHHHHHHHHHC
T ss_pred CCCCEEEEEeCCCCceECCHHHHHHHhc----CCCCCccCCCCCHHHHHHHHHh
Confidence 4568999999999999999999999999 9999999999999999999986
No 13
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.88 E-value=1.7e-22 Score=171.79 Aligned_cols=123 Identities=24% Similarity=0.086 Sum_probs=98.7
Q ss_pred eEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhc
Q 021120 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG 254 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~ 254 (317)
.++|||||||++|++.+|+|+++... ++...........|||+|||+|++.||+++ ..++|.|+|||++|++.+
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~-~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i-- 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTE-TEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA-- 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECS-SCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH--
T ss_pred CEEEEEEcccCCCCCceEEEEEEEEC-CEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh--
Confidence 58999999999999999999999874 444344444467899999999999999988 257999999999999988
Q ss_pred ccccCC---hhHHHHHHHHHHHhhcCCcEEEEEeCC---------CccHHHHHHHHHhhcCC
Q 021120 255 LWKINN---QNLAGLCKEAKELKEKFQSFQINHILR---------NLNSEADAQANMGIYLK 304 (317)
Q Consensus 255 ~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~~---------~~Ne~AD~LAk~A~~~~ 304 (317)
|.... ..++++|+++...+..+..|.|.||+. ++|+.||+||++|+..+
T Consensus 97 -w~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 97 -HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp -HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 53322 246788888877655677888888864 34999999999999765
No 14
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=99.88 E-value=9e-24 Score=141.30 Aligned_cols=47 Identities=34% Similarity=0.655 Sum_probs=45.4
Q ss_pred CceEEEEeCCcccccCChHHHHHHhccccCCCCCceeccCCCHHHHHHHHH
Q 021120 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLA 56 (317)
Q Consensus 6 ~k~yav~~g~~~Gi~~~w~~~q~qv~~~~~~~~~a~yk~f~~~~ea~~f~~ 56 (317)
||||||++||+||||+||+||++||. ||+||.||+|.|++||++||+
T Consensus 1 ~kyYaV~~G~~~GIy~sW~ec~~qV~----g~~ga~yK~F~t~~eA~~~l~ 47 (47)
T 1qhk_A 1 GNFYAVRKGRETGIYNTWNECKNQVD----GYGGAIYKKFNSYEQAKSFLG 47 (47)
T ss_dssp CEEEEECSSSSCEEEEEHHHHHHHSS----SCSSCCCEEESCHHHHHHHHC
T ss_pred CCEEEEEeCCCCceECCHHHHHHHhc----CCCCCccCCCCCHHHHHHHhC
Confidence 58999999999999999999999999 999999999999999999984
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.83 E-value=1.4e-21 Score=161.88 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=91.6
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
..++|||||||++|++.+|||++++ .+|.....++..+..|||+|||+|+++||+.+.+.+. +|.|+|||++|++|++
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 3578999999999999999999998 5676655555666789999999999999999999988 9999999999999999
Q ss_pred cccccC----ChhHHHHHHHHHHHhh---c--CC-cEEEEEeCCCccHHHH
Q 021120 254 GLWKIN----NQNLAGLCKEAKELKE---K--FQ-SFQINHILRNLNSEAD 294 (317)
Q Consensus 254 ~~w~~~----~~~~~~l~~~i~~l~~---~--f~-~v~~~Hv~~~~Ne~AD 294 (317)
+.|... ...+.+||+.+..+.. . +. .+...|....||..||
T Consensus 88 ~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 88 DKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred cCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 988432 2256778887766432 2 22 2223445555666655
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.79 E-value=1.5e-19 Score=147.41 Aligned_cols=97 Identities=27% Similarity=0.323 Sum_probs=78.8
Q ss_pred EEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhc-
Q 021120 176 CTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQG- 254 (317)
Q Consensus 176 ~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~- 254 (317)
..|||||||++|++.+|+|+|+.. +|......+..+..|||+|||+|+++||+.+.+.+.+ +.|+|||++|++|+.+
T Consensus 6 ~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 6 ESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp SSEEEEEEEETTTEEEEEEEEETT-TCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHHHT
T ss_pred eEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHHcC
Confidence 479999999999999999888766 5665445556678999999999999999999998865 8999999999999996
Q ss_pred ccccCC---hhHHHHHHHHHHHh
Q 021120 255 LWKINN---QNLAGLCKEAKELK 274 (317)
Q Consensus 255 ~w~~~~---~~~~~l~~~i~~l~ 274 (317)
.|+... ..+.+||+.+.++.
T Consensus 84 ~~kt~~~~~vkN~dLw~~ld~~~ 106 (134)
T 4htu_A 84 KAKSTLVRNEETALIWKLVDEAE 106 (134)
T ss_dssp CCCCCCCCSSTTHHHHHHHHHHH
T ss_pred CcccCCCCCccCHHHHHHHHHHH
Confidence 455432 25678888776543
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.77 E-value=1.4e-18 Score=173.91 Aligned_cols=117 Identities=19% Similarity=0.140 Sum_probs=93.1
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
+.++|||||||++|++.+|+|+++..+++ ........|||+||++|+++||+. +.++|.|+|||++|+++++
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~----~~~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~ 506 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTDRGKD----KVKKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVA 506 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCE----EEEEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHH
T ss_pred CceEEEEcccccCCCCCceEEEEEEeCCE----eeccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHh
Confidence 46899999999999999999999976432 133456789999999999999987 5689999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHhhcCCcEEEEEe----CCCccHHHHHHHHHhh
Q 021120 254 GLWKINNQNLAGLCKEAKELKEKFQSFQINHI----LRNLNSEADAQANMGI 301 (317)
Q Consensus 254 ~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv----~~~~Ne~AD~LAk~A~ 301 (317)
+ |+.. .+.++++++.+++..+..|.+.|| ++++|+.||+||++|+
T Consensus 507 ~-~~~~--~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 507 S-QPTE--SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp T-CCSE--ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred c-cccc--ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 8 7532 223566666666555666666666 4589999999999874
No 18
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.71 E-value=5.5e-18 Score=169.64 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=88.0
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 253 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~ 253 (317)
+.++|||||||++|++.+|+|+++.. |....+ .....|||+|||.|+++||+.+ .++|.|+|||++|+++++
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~--~~~~~~--~~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~ 509 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNK--GRQKVV--PLTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQ 509 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETT--SCEEEE--EECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHT
T ss_pred CCEEEEEccCCCCCCCceEEEEEEEC--CcEEEe--cCCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHh
Confidence 35899999999999999999999863 333222 3467899999999999999988 478999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHhhcCCcEEEEEeCC----CccHHHHHHHHHh
Q 021120 254 GLWKINNQNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMG 300 (317)
Q Consensus 254 ~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~~----~~Ne~AD~LAk~A 300 (317)
+ |...+ +.++++++...+..+..|.+.||++ ++|+.||+||++|
T Consensus 510 ~-~~~~~--~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 510 A-QPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp T-CCSEE--SSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred c-CCccC--CHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 8 54431 2355666655444455677766654 7899999999976
No 19
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=82.80 E-value=4.9 Score=34.88 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=48.1
Q ss_pred EEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhcccccCChhHHHHHHHHHH---
Q 021120 196 VLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKE--- 272 (317)
Q Consensus 196 vi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~~w~~~~~~~~~l~~~i~~--- 272 (317)
+|.|++|++.. ...++...-..+-..++...+++|.+.|++.+++|.=| +..|+.....+..|+.-+..
T Consensus 12 iIMDGNrRwAk-~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS-------tENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 12 VVMDGNRRWAR-AKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFS-------TENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp EEECCCC---------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE-------SGGGGSCHHHHHHHHHHHHHHHH
T ss_pred EeccCcHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------ccccCCCHHHHHHHHHHHHHHHH
Confidence 44566777622 22334445566788899999999999999999999766 34577665544444433332
Q ss_pred -HhhcC--CcEEEEEeCCC
Q 021120 273 -LKEKF--QSFQINHILRN 288 (317)
Q Consensus 273 -l~~~f--~~v~~~Hv~~~ 288 (317)
....+ ..|.+.++|+.
T Consensus 84 ~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 84 EALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp HHHHHSTTTTEEEEEESCG
T ss_pred HHHHHHHHCCcEEEEEeCh
Confidence 22222 46788888763
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=74.72 E-value=7.9 Score=36.66 Aligned_cols=79 Identities=9% Similarity=-0.092 Sum_probs=48.0
Q ss_pred ceEEEEEeCcccCCCCceEEEEEEEcCCCCEEEEeecc---ccccchHHHHHH-HHHHHHHHHH--cC--CcEEEEEeCh
Q 021120 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVYRLREGV---GIATNNVAEYRA-LILGLKYALQ--KG--YKHIRVQGDS 245 (317)
Q Consensus 174 ~~~~iytDGS~~~n~~~aG~Gvvi~~~~g~~~~~s~~~---~~~tnn~AEl~A-ll~AL~~a~~--~g--~~~i~I~tDS 245 (317)
..+.++||+|-. +.+|+++...++..+ .++.. ...+.+.-|++| ++.||+.-.- .| ...++++||.
T Consensus 323 ~~~~l~~das~~-----g~~g~vl~q~~~~~~-~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~ 396 (428)
T 2zd1_B 323 KDLIAEIQKQGQ-----GQWTYQIYQEPFKNL-KTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKE 396 (428)
T ss_dssp SCCEEEEEEEET-----TEEEEEEESSTTCEE-EEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHH
T ss_pred CCEEEEEecCCC-----CcEEEEEecCCCcee-eecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHH
Confidence 357999999842 367888876555431 22222 222334457777 9999986432 23 2467888999
Q ss_pred HHHHHHHhcccccC
Q 021120 246 KLVCMQIQGLWKIN 259 (317)
Q Consensus 246 ~~vi~~v~~~w~~~ 259 (317)
+.+. +++..|+..
T Consensus 397 ~~~~-~~~~~~q~~ 409 (428)
T 2zd1_B 397 TWET-WWTEYWQAT 409 (428)
T ss_dssp HHHH-HHHHHCCCS
T ss_pred HHHH-HHHhccccc
Confidence 8765 444455543
No 21
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=73.58 E-value=1.8 Score=38.31 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhcccccCChh
Q 021120 212 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQN 262 (317)
Q Consensus 212 ~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~~w~~~~~~ 262 (317)
+...-..+-..++...+++|.+.|++.|++|..| +..|+.....
T Consensus 45 ~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS-------tENwkRp~~E 88 (256)
T 4h8e_A 45 PRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFS-------TENWSRPESE 88 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TTGGGSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------hhhhCCCHHH
Confidence 3444567788999999999999999999999988 3457665543
No 22
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=67.51 E-value=4.5 Score=35.16 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHcCCcEEEEEeChHHHHHHHhcccccCChhHHHHHHHHHHHhhc----CCcEEEEEeCC
Q 021120 216 NNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK----FQSFQINHILR 287 (317)
Q Consensus 216 nn~AEl~All~AL~~a~~~g~~~i~I~tDS~~vi~~v~~~w~~~~~~~~~l~~~i~~l~~~----f~~v~~~Hv~~ 287 (317)
-..+-+.++...+++|.+.|++.|++|.=| +..|+........|++.+...+.. -..|.+.++|+
T Consensus 28 GH~~G~~~l~~i~~~c~~~GI~~lTlYaFS-------teN~kRp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~ 96 (227)
T 2vg0_A 28 GYRMGAAKIAEMLRWCHEAGIELATVYLLS-------TENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGD 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TGGGGSCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeec-------ccccCCCHHHHHHHHHHHHHHHHHHhccccCeEEEecCC
Confidence 345678889999999999999999999876 556776655444444444332221 24577788876
No 23
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=58.65 E-value=24 Score=30.22 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.7
Q ss_pred ceEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 190 QAGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 190 ~aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
...-|.+|++++|.+..........-.|..|++-++.||+++.++|
T Consensus 145 ~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 145 VAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp EECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred eeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhhhHHhcC
Confidence 3445789999999884443333345568889999999999987766
No 24
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=55.74 E-value=28 Score=29.71 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred eEEEEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 191 AGAGAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 191 aG~Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
+--|++|.+++|.+..........-.|..|++-++.||++..++|
T Consensus 142 ~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 142 ALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHC
T ss_pred eeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHhhcC
Confidence 445789999999884433333344568899999999999988766
No 25
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=54.46 E-value=7.9 Score=34.76 Aligned_cols=30 Identities=17% Similarity=-0.014 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 216 NNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 216 nn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
-..+-+.++...+++|.+.|++.|++|.=|
T Consensus 80 GH~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 80 GHKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 345677889999999999999999999865
No 26
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=53.87 E-value=1.2 Score=42.67 Aligned_cols=72 Identities=15% Similarity=-0.005 Sum_probs=43.8
Q ss_pred eEEEEEeCcccCCCCceEEEEEEE-cCCCC--E-EEEeeccc----cccchHHHHHHHHHHHHHHHH--cCCcEEEEEeC
Q 021120 175 SCTLEFDGASKGNPGQAGAGAVLR-AEDGS--V-YRLREGVG----IATNNVAEYRALILGLKYALQ--KGYKHIRVQGD 244 (317)
Q Consensus 175 ~~~iytDGS~~~n~~~aG~Gvvi~-~~~g~--~-~~~s~~~~----~~tnn~AEl~All~AL~~a~~--~g~~~i~I~tD 244 (317)
.+.+|||+|-. |+|+++. ..+|. . .-.+..+. .-+....|++|++.|++.... .| .+++|+||
T Consensus 346 ~~~l~~DAS~~------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g-~~~~v~tD 418 (455)
T 1rw3_A 346 PFELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG-QPLVIKAP 418 (455)
T ss_dssp TTSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCS-SCEEEECS
T ss_pred cEEEEEeccCC------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCC-CcEEEEec
Confidence 46899999853 2233442 22222 2 22222221 234456799999999988764 23 58999999
Q ss_pred hHHHHHHHhc
Q 021120 245 SKLVCMQIQG 254 (317)
Q Consensus 245 S~~vi~~v~~ 254 (317)
+. +..++..
T Consensus 419 h~-~~~~l~~ 427 (455)
T 1rw3_A 419 HA-VEALVKQ 427 (455)
T ss_dssp SC-TTTTSSS
T ss_pred Ch-HHHHhCC
Confidence 97 6666654
No 27
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=52.94 E-value=5.4 Score=35.21 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=27.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 212 GIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 212 ~~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
+...-..+-..++...+++|.+.|++.|++|.=|
T Consensus 38 ~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 38 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 3344567788999999999999999999999765
No 28
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=46.46 E-value=10 Score=33.23 Aligned_cols=30 Identities=7% Similarity=-0.050 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 216 NNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 216 nn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
-..+-+.++...+++|.+.|++.+++|.=|
T Consensus 40 GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 40 GHKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 345567889999999999999999999866
No 29
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=45.24 E-value=7.4 Score=31.90 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.4
Q ss_pred cccchHHHHHHHHHHHHHHHHc
Q 021120 213 IATNNVAEYRALILGLKYALQK 234 (317)
Q Consensus 213 ~~tnn~AEl~All~AL~~a~~~ 234 (317)
..|||++|++|.+.||+.+++.
T Consensus 49 ~~tnn~te~~Aei~Al~~al~~ 70 (165)
T 2lsn_A 49 IPLGNHTAQMAEIAAVEFACKK 70 (165)
T ss_dssp EEESSCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999988764
No 30
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=34.75 E-value=11 Score=33.17 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 216 NNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 216 nn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
-..+-+.++...+++|.+.|++.|++|.=|
T Consensus 45 GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 74 (249)
T 1f75_A 45 GHYEGMQTVRKITRYASDLGVKYLTLYAFS 74 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEEC-
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 355667889999999999999999999866
No 31
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=32.73 E-value=10 Score=33.44 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 216 NNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 216 nn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
-..+-+.++...+++|.+.|++.|++|.=|
T Consensus 42 GH~~G~~~l~~iv~~c~~~GI~~lTlYaFS 71 (253)
T 3qas_B 42 GHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred hHHHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 345667889999999999999999999866
No 32
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=29.60 E-value=80 Score=24.49 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=32.1
Q ss_pred EEEEEEEcCCCCEEEEeeccc-cccchHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 192 GAGAVLRAEDGSVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 192 G~Gvvi~~~~g~~~~~s~~~~-~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
..|+++...+|+++.-. ... .....-||..||..|+.. -...++.+.|++|.
T Consensus 28 ~VGAal~~~dG~i~~G~-NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGV-NVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEE-CCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEe-ccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 46777776778773211 221 223467899999988863 12345678888874
No 33
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.39 E-value=40 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=29.9
Q ss_pred ccccCChHHHHHHhccccCCCCCceeccCCCHHHHHHHHHh
Q 021120 17 VGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLAS 57 (317)
Q Consensus 17 ~Gi~~~w~~~q~qv~~~~~~~~~a~yk~f~~~~ea~~f~~~ 57 (317)
.--|++|.+|...+. ..++|+...+..|=+.+++.
T Consensus 32 I~~~s~W~~~~~~i~------~Dpry~av~~~~eRe~lF~e 66 (83)
T 2doe_A 32 LDSQSRWSKVKDKVE------SDPRYKAVDSSSMREDLFKQ 66 (83)
T ss_dssp CCTTCCHHHHHHHHT------TSTHHHHCCCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHc------cCHHHHhcCCHHHHHHHHHH
Confidence 446899999999997 47799999999998888865
No 34
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=25.89 E-value=1.3e+02 Score=23.49 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=32.5
Q ss_pred EEEEEEEcCCCCEEEEeecccc---ccchHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 192 GAGAVLRAEDGSVYRLREGVGI---ATNNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 192 G~Gvvi~~~~g~~~~~s~~~~~---~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
..|+++...+|+++.-. .... ....-||..||..|... -...+..+.|++|.
T Consensus 25 ~VGAal~~~dG~i~~G~-Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGC-NIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEE-CBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEe-CcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 46777776677764211 2221 22356899999988864 23345788999874
No 35
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=23.61 E-value=1.2e+02 Score=24.05 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=32.9
Q ss_pred EEEEEEEcCCCCEEEEeeccc---cccchHHHHHHHHHHHHHHHHcCCcEEEEEeCh
Q 021120 192 GAGAVLRAEDGSVYRLREGVG---IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 245 (317)
Q Consensus 192 G~Gvvi~~~~g~~~~~s~~~~---~~tnn~AEl~All~AL~~a~~~g~~~i~I~tDS 245 (317)
..|+++...+|+++.-. ... .....-||..||..|+.. -...++.+.|++|.
T Consensus 37 ~VGAal~~~dG~i~~G~-NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGC-NIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CEEEEEEETTSCEEEEE-CBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCcEEEEE-eccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 46777776778774211 222 122356899999998863 22345788999884
No 36
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=22.95 E-value=14 Score=28.17 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=16.3
Q ss_pred ccCCCHHHHHHHHHhcCC
Q 021120 43 KGYGLSKEAEEYLASHGL 60 (317)
Q Consensus 43 k~f~~~~ea~~f~~~~~~ 60 (317)
-.|+|+|+|.+|.+.++-
T Consensus 64 L~F~skE~AiayAek~G~ 81 (108)
T 2lju_A 64 LSFTTRELAIAYAVAHKI 81 (108)
T ss_dssp EEESSHHHHHHHHHHTTC
T ss_pred EecCCHHHHHHHHHHcCC
Confidence 789999999999998874
No 37
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=20.75 E-value=2e+02 Score=23.88 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=28.6
Q ss_pred EEEEEcCCCCEEEE-eeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 194 GAVLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 194 Gvvi~~~~g~~~~~-s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
+++|.+.+|.+... .+.. ..-.+..|++.++.+|+...+++
T Consensus 130 ~~flID~~G~I~~~~~~~~-~~g~~~~ell~~i~~lq~~~~~~ 171 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPA-TTGRNAHEILRVLKSLQLTYTTP 171 (220)
T ss_dssp EEEEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHhhhcCC
Confidence 67888999988332 2222 22347789999999999876654
No 38
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=20.63 E-value=2e+02 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=28.1
Q ss_pred EEEEEcCCCCEEEE-eeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 194 GAVLRAEDGSVYRL-REGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 194 Gvvi~~~~g~~~~~-s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
+++|.+.+|.+... .... ....+..|++.++.+|+...+.+
T Consensus 129 ~~fiID~~G~I~~~~~~~~-~~gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPA-TTGRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHHHhhccCC
Confidence 57888999988332 2222 22346789999999999876544
No 39
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=20.28 E-value=2e+02 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=28.4
Q ss_pred EEEEEcCCCCEEE-EeeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 194 GAVLRAEDGSVYR-LREGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 194 Gvvi~~~~g~~~~-~s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
+.+|.+.+|.+.. ..+.. ..-.+..|++.++.+|+....++
T Consensus 126 ~~fIID~dG~I~~~~~~~~-~~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPM-ELGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCC-cccchhHHHHHHHHHHHhccccC
Confidence 5788888998833 22222 22357889999999999876655
No 40
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=20.16 E-value=38 Score=25.61 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.3
Q ss_pred ccCCCHHHHHHHHHhcCC
Q 021120 43 KGYGLSKEAEEYLASHGL 60 (317)
Q Consensus 43 k~f~~~~ea~~f~~~~~~ 60 (317)
-.|+|+|+|.+|.+.++-
T Consensus 56 L~F~skE~AiayAek~G~ 73 (106)
T 2jya_A 56 LTFETQEQAEAYAQRKGI 73 (106)
T ss_dssp EEESSHHHHHHHHHHHTC
T ss_pred EecCCHHHHHHHHHHcCC
Confidence 789999999999998874
No 41
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=20.03 E-value=1.9e+02 Score=24.77 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=29.2
Q ss_pred EEEEEcCCCCEEEEeeccccccchHHHHHHHHHHHHHHHHcC
Q 021120 194 GAVLRAEDGSVYRLREGVGIATNNVAEYRALILGLKYALQKG 235 (317)
Q Consensus 194 Gvvi~~~~g~~~~~s~~~~~~tnn~AEl~All~AL~~a~~~g 235 (317)
+.+|.+.+|.+............+..|++.++.+|+...+.+
T Consensus 184 ~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhhccccccC
Confidence 578889999883332222233456789999999999887665
Done!