BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021121
(317 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD------RPTSVRT-FKEHA 149
NP L H +E + +NP +++S D T+ LW + + +T F H
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
V + +W+ H +F S + D L IWD R ++ + AH E+ +N Y +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++A+ S DK++ +WD+RN ++ + H + +V++SPH +LAS D + +WD
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D++W H+SL + D + I+DT T+ P S+ HT EV+ +NP
Sbjct: 230 VEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + +F+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
+G I H +I WN + +I S S D +++W +
Sbjct: 350 IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 66/209 (31%)
Query: 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA 211
V++ T +P D SG+C D+R G H+ E WN + SA
Sbjct: 151 VFDYTKHPSKPD----PSGECNP---DLRLRG-------HQKEGYGLSWNPNLSGHLLSA 196
Query: 212 SVDKSIKIWDV------------------------------------------------- 222
S D +I +WD+
Sbjct: 197 SDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
Query: 223 ---RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
N P ++ H V + F+P+ +LA+ S D TV LWD + ++ H
Sbjct: 257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+ V S E +LAS+G D + VW
Sbjct: 317 KDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHAY 150
P L H +E + +NP +++S D T+ LW ++ P R F H
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCL 207
V + W+ H +F S + D L IWD R ++ + AH E+ +N Y + +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+A+ S DK++ +WD+RN ++ + H + +V++SPH +LAS D + +WD
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D+AW H+SL + D + I+DT T+ P ++ HT EV+ +NP
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + +F+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
+G I H +I WN + +I S S D +++W +
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHAY 150
P L H +E + +NP +++S D T+ LW ++ P R F H
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 151 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCL 207
V + W+ H +F S + D L IWD R ++ + AH E+ +N Y + +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 208 IASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+A+ S DK++ +WD+RN ++ + H + +V++SPH +LAS D + +WD
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D+AW H+SL + D + I+DT T+ P ++ HT EV+ +NP
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + +F+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
+G I H +I WN + +I S S D +++W +
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVD-RPTSVRT------FKEHA 149
P L H +E + +NP +++S D T+ LW ++ P R F H
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
V + W+ H +F S + D L IWD R ++ + AH E+ +N Y +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++A+ S DK++ +WD+RN ++ + H + +V++SPH +LAS D + +WD
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D+AW H+SL + D + I+DT T+ P ++ HT EV+ +NP
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + +F+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
+G I H +I WN + +I S S D +++W +
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 162
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 222 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 281 EDNLVYIWN 289
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 263 EDNLVYIWN 271
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 160
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 220 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 279 EDNLVYIWN 287
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 260 EDNLVYIWN 268
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 263 EDNLVYIWN 271
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 137
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 197 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 256 EDNLVYIWN 264
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 144
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 204 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 263 EDNLVYIWN 271
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 260 EDNLVYIWN 268
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 155
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 215 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 274 EDNLVYIWN 282
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 143
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 203 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 262 EDNLVYIWN 270
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 139
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 199 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 258 EDNLVYIWN 266
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 138
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 198 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 257 EDNLVYIWN 265
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 134
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 194 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 253 EDNLVYIWN 261
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 138
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 198 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 257 EDNLVYIWN 265
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
D LVY+W
Sbjct: 260 EDNLVYIWN 268
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT------FKEHA 149
NP L H +E + +N +++S D TV LW ++ P + F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
V + W+ H +F S + D L IWD R ++ ++ AH E+ +N Y +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++A+ S DK++ +WD+RN ++ + H + +V +SPH +LAS D + +WD
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D+AW H+SL + D + I+DT T+ P + HT EV+ +NP
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + TF+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
+G I H +I WN + +I S S D ++IW +
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 66/209 (31%)
Query: 152 VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASA 211
V++ T +P D SG+C D+R G H+ E WN + SA
Sbjct: 153 VFDYTKHPAKPD----PSGECNP---DLRLRG-------HQKEGYGLSWNSNLSGHLLSA 198
Query: 212 SVDKSIKIWDV----RNYRV--PIAVLNGHGYAVRKV----------------------- 242
S D ++ +WD+ + ++ A+ GH V V
Sbjct: 199 SDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 258
Query: 243 -----------------------KFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
F+P+ +LA+ S D TV LWD + ++ H
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+ V S E +LAS+G D + VW
Sbjct: 319 KDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR-PTSVRT------FKEHA 149
NP L H +E + +N +++S D TV LW ++ P + F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDC 206
V + W+ H +F S + D L IWD R ++ ++ AH E+ +N Y +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++A+ S DK++ +WD+RN ++ + H + +V +SPH +LAS D + +WD
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D+AW H+SL + D + I+DT T+ P + HT EV+ +NP
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 123 ITSSWDDTVKLWTV-DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
T S D TV LW + + + TF+ H ++ W+P + + S+ D L +WD+ +
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Query: 182 MGSTM--------------IIPAHEFEILACDWNKYDDCLIASASVDKSIKIW 220
+G I H +I WN + +I S S D +IW
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 145 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILA 197
+ H Y +WN S SAS D T+ +WD+ + + + I H +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 198 CDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASC 255
W+ + L S + D+ + IWD R+ P +++ H V + F+P+ +LA+
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
S D TV LWD + ++ H + V S E +LAS+G D + VW
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D T+ LWD+ L H E + + + SV + S
Sbjct: 201 VKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
D +VY+W
Sbjct: 260 EDNMVYIWN 268
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+++S D T+K+W V ++T K H+ V+ +NP+ S++ S S D ++RIWDV+
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKT 141
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRK 241
+PAH + A +N+ D LI S+S D +IWD + + +++ V
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 242 VKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTG 300
VKFSP+ + +LA+ + D + LWD+ L H E + + + SV + S
Sbjct: 201 VKFSPNGKYILAA-TLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 301 WDELVYVWQ 309
D +VY+W
Sbjct: 260 EDNMVYIWN 268
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 90 TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHA 149
T + P + +L HT+ V S ++P + +SS D +K+W +T H
Sbjct: 10 TPVKPNYALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 150 YCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIA 209
+ + W+ S++ SAS D TL+IWDV + H + C++N + LI
Sbjct: 69 LGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIV 126
Query: 210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
S S D+S++IWDV+ + + L H V V F+ +L+ S SYD +WD
Sbjct: 127 SGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD 180
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 16/239 (6%)
Query: 71 SHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
S D IA+ +D +VK+++ +++L H+ V ++P + + ++S D
Sbjct: 312 SPDGQTIASASDDKTVKLWN----RNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 366
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
TVKLW + ++T H+ V ++P SAS D T+++W+ R +
Sbjct: 367 TVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT 423
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
H + ++ DD IASAS DK++K+W+ RN ++ + L GH +VR V FSP +
Sbjct: 424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQ 480
Query: 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+AS S D TV LW+ + L+ H+ GV S + +AS D+ V +W
Sbjct: 481 T-IASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 535
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 15/197 (7%)
Query: 71 SHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
S D IA+ +D +VK+++ +++L H+ V ++P D I S+ DD
Sbjct: 394 SPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSP--DDQTIASASDD 447
Query: 130 -TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
TVKLW + ++T H+ V ++P SAS D T+++W+ R +
Sbjct: 448 KTVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTL 504
Query: 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
H + ++ D IASAS DK++K+W+ RN ++ + L GH +V V FSP
Sbjct: 505 TGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDG 561
Query: 249 RNLLASCSYDMTVCLWD 265
+ +AS S D TV LW+
Sbjct: 562 QT-IASASSDKTVKLWN 577
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 16/239 (6%)
Query: 71 SHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
S D IA+ +D +VK+++ +++L H+ V ++P + + ++S D
Sbjct: 25 SPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 79
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
TVKLW + ++T H+ V ++P SAS D T+++W+ R +
Sbjct: 80 TVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT 136
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
H + ++ D IASAS DK++K+W+ RN ++ + L GH +V V FSP +
Sbjct: 137 GHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQ 193
Query: 250 NLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+AS S D TV LW+ + L+ H+ GV S + +AS D+ V +W
Sbjct: 194 T-IASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 248
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 13/196 (6%)
Query: 71 SHDSLLIAAVAD-GSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
S D IA+ +D +VK+++ +++L H+ V ++P + + ++S D
Sbjct: 148 SPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDK 202
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP 189
TVKLW + ++T H+ V ++P SAS D T+++W+ R +
Sbjct: 203 TVKLWNRNGQL-LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLT 259
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRR 249
H + + + D IASAS DK++K+W+ RN ++ + L GH +V V FSP +
Sbjct: 260 GHSSSVNGVAF-RPDGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQ 316
Query: 250 NLLASCSYDMTVCLWD 265
+AS S D TV LW+
Sbjct: 317 T-IASASDDKTVKLWN 331
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 32/266 (12%)
Query: 58 DTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPT 117
+T+ GVY L + D +++ + D ++KI+D T R L HT V Y+
Sbjct: 131 ETSKGVYCLQYD---DQKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDER 184
Query: 118 RRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIW 177
IT S D TV++W V+ + T H V + +N + + + S D ++ +W
Sbjct: 185 ---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW 238
Query: 178 DV---REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
D+ ++ ++ H + D +DD I SAS D++IK+W+ + LNG
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVD---FDDKYIVSASGDRTIKVWNTSTCEF-VRTLNG 294
Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEF--AVGVDMSVLV 292
H + +++ R L+ S S D T+ LWD A + + H E + D +V
Sbjct: 295 HKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDNKRIV 350
Query: 293 EGLLASTGWDELVYVWQ--QGMDPRA 316
G +D + VW +DPRA
Sbjct: 351 SG-----AYDGKIKVWDLVAALDPRA 371
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS-SWDDT 130
++ +++ D S+ ++D A P R L H V+ D++ D +I S S D T
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRT 277
Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA 190
+K+W VRT H + + R + S S D T+R+WD+ ++
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 191 HEFEILACDWNKYDDCLIASASVDKSIKIWDV---RNYRVP-----IAVLNGHGYAVRKV 242
HE E++ C ++D+ I S + D IK+WD+ + R P + L H V ++
Sbjct: 335 HE-ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391
Query: 243 KFSPHRRNLLASCSYDMTVCLWDFMVEDA 271
+F + + S S+D T+ +WDF+ + A
Sbjct: 392 QFDEFQ---IVSSSHDDTILIWDFLNDPA 417
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V D++W +S IAAV +G + L T +L R ++S D+ P+R
Sbjct: 106 VKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 163
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
I+ S D+TV ++ TF EH V++ +NP S +F S GD T+ +++ +
Sbjct: 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDG 222
Query: 183 GSTMIIP-------AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227
T + AH + W+ D IASAS DK+IKIW+V +V
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKV 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 26/248 (10%)
Query: 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
+I+ D +V I++ P + EHT+ VHS YNP F ++ D T+ L+
Sbjct: 163 IISGSDDNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN 218
Query: 136 VDRPTSVRTFKE-------HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
T F++ H+ V+ TW+P + + SAS D T++IW+V + I
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTI 277
Query: 189 PAH---EFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
P E + L W K + S S + I + + V GH A+ + S
Sbjct: 278 PVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNPELGSID-QVRYGHNKAITALSSS 333
Query: 246 PHRRNLLASCSYDMTVCLWDFMVEDALVGRY--DHHTEFAVGVDMSVLVEGLLASTGWDE 303
+ L S + + WD + + R D H G+ + +G L + WD+
Sbjct: 334 ADGKTLF-SADAEGHINSWD--ISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSWDD 388
Query: 304 LVYVWQQG 311
+ V G
Sbjct: 389 HLKVVPAG 396
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 114/268 (42%), Gaps = 29/268 (10%)
Query: 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRD 120
D V D+++ S LL + AD ++K++D IR++H H V S P D
Sbjct: 151 DSVQDISFDHS-GKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPNG-D 205
Query: 121 SFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
+++S D T+K+W V V+TF H V N + + S S D T+R+W V
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVA 264
Query: 181 EMGSTMIIPAHEFEILACDW---NKYDDC----------------LIASASVDKSIKIWD 221
+ H + W + Y + S S DK+IK+WD
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 222 VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 281
V + + + L GH VR V F + +L SC+ D T+ +WD+ + + + H
Sbjct: 325 V-STGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCM-KTLNAHEH 381
Query: 282 FAVGVDMSVLVEGLLASTGWDELVYVWQ 309
F +D ++ + D+ V VW+
Sbjct: 382 FVTSLDFHKTAPYVVTGSV-DQTVKVWE 408
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHS-DVFCSASGDCTLRIWDVR 180
+++S D T+K+W + RT K H V + +++ HS + S S D T+++WD +
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWDFQ 180
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVR 240
+ H+ + + D ++ SAS DK+IK+W+V+ + GH VR
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYC-VKTFTGHREWVR 238
Query: 241 KVKFSPHRRN-LLASCSYDMTVCLW 264
V+ P++ L+ASCS D TV +W
Sbjct: 239 MVR--PNQDGTLIASCSNDQTVRVW 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 8/174 (4%)
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEI 195
+ RP H V ++P S V SAS D T+++WD + H +
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 196 LACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASC 255
++ + L+AS S D +IK+WD + + I ++GH + V V P+ +++ S
Sbjct: 154 QDISFD-HSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIV-SA 210
Query: 256 SYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
S D T+ +W+ V + H E+ V + +G L+AS D+ V VW
Sbjct: 211 SRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPN--QDGTLIASCSNDQTVRVW 261
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 207 LIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++ SAS D +IK+WD L GH +V+ + F H LLASCS DMT+ LWDF
Sbjct: 122 VMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDF 179
Query: 267 MVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
+ + + H + +S++ G + S D+ + +W+
Sbjct: 180 QGFECIRTMHGHDHNVS---SVSIMPNGDHIVSASRDKTIKMWE 220
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 71 SHDSLLIAAVA-DGSVKIYDTALPPTANPIRSLHEHTRE------------VHSADYNPT 117
+ D LIA+ + D +V+++ A +R H H E + A + T
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSET 301
Query: 118 RRDS-----FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172
++ ++ S D T+K+W V + T H V ++ S + D
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDK 360
Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
TLR+WD + + AHE + + D++K + + SVD+++K+W+ R
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 23/222 (10%)
Query: 65 DLAWSESHDSLLIAAVAD-GSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRDSF 122
DL WS H++ +IA D GS+++Y T A N + H+ V + +N + +
Sbjct: 72 DLDWS--HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVL 129
Query: 123 ITSSWDDTVKLWTVDR---------PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCT 173
+ + + +W +++ P + V + WN + VF SA
Sbjct: 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189
Query: 174 LRIWDVR------EMGSTMIIPAHEFEILACDWNKYDDCLIASAS---VDKSIKIWDVRN 224
IWD++ + T + ++ +W+ + +A+A+ D SI IWD+RN
Sbjct: 190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249
Query: 225 YRVPIAVLN-GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
P+ LN GH + + + +LL S D TV LW+
Sbjct: 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 25/251 (9%)
Query: 32 GILGNGRVHVLDLSPAAPALTELVAFDT-ADGVYDLAWSESHDSLLIAAVADGSVKIYD- 89
G L NG + + + A A+ + F + V + ++ D++L + +G + I+D
Sbjct: 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143
Query: 90 ---TALPPTANPIRSLHEHTR--EVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSV-- 142
T P P+ + EV S +N + F ++ + +W + V
Sbjct: 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH 203
Query: 143 -------RTFKEHAYCVYNATWNPRHSDVFCSASG---DCTLRIWDVREMGSTM--IIPA 190
K+ V W+P++S +A+G D ++ IWD+R + + +
Sbjct: 204 LSYTSPNSGIKQQLSVV---EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260
Query: 191 HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN 250
H+ IL+ DW D+ L+ S+ D ++ +W+ + ++ G K KF+P +
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPD 319
Query: 251 LLASCSYDMTV 261
L A S+D +
Sbjct: 320 LFACASFDNKI 330
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 82 DGSVKIYDTALPPTANPIRSLHE-HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPT 140
D S+ I+D L P+++L++ H + + S D+ ++S D+TV LW +
Sbjct: 239 DPSILIWD--LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296
Query: 141 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM 186
+ F + + P D+F AS D + + ++ + +T+
Sbjct: 297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 71 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY-NPTRRDSFITSSWDD 129
S DS + AD VKI+D+A T + + EH+ +V+ + N + T S D
Sbjct: 667 SDDSYIATCSADKKVKIWDSA---TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII- 188
+KLW +++ T H V + ++P ++ S S D TLR+WDVR I
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSIN 782
Query: 189 ----------PAHEFEIL--ACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG 236
P + E++ C W+ D +I +A + ++D+ + + GH
Sbjct: 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHH 840
Query: 237 YAVRKVKFSPH 247
++ FSP+
Sbjct: 841 STIQYCDFSPY 851
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 13/186 (6%)
Query: 51 LTELVAFDTADGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREV 109
L+ LV D VY +S+ D IA+ AD +++++ T + + H EV
Sbjct: 606 LSRLVVRPHTDAVYHACFSQ--DGQRIASCGADKTLQVFKA---ETGEKLLDIKAHEDEV 660
Query: 110 HSADYNPTRRDSFI-TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW-NPRHSDVFCS 167
++ DS+I T S D VK+W V T+ EH+ V + N + + +
Sbjct: 661 LCCAFSSD--DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718
Query: 168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NY 225
S D L++WD+ + + H + C ++ DD L+AS S D ++++WDVR N
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANE 777
Query: 226 RVPIAV 231
R I V
Sbjct: 778 RKSINV 783
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 48/278 (17%)
Query: 67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
+WS D +++AA V ++D I + H T + D++P + I S
Sbjct: 805 SWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHST--IQYCDFSPYDHLAVIALS 860
Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---- 182
V+LW +D V + H V+ ++P S F +AS D T+R+W+ +++
Sbjct: 861 -QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNS 918
Query: 183 --------------GSTMIIPAHE---FEILACDWNKYD---------DCL------IAS 210
TM++ +++A + D CL +A
Sbjct: 919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
D +IKI ++ N RV + + GH AVR ++F+ + L++S S D + +W++ D
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGD 1036
Query: 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+ + T D +L + L S +D V VW
Sbjct: 1037 YVFLQAHQETV----KDFRLLQDSRLLSWSFDGTVKVW 1070
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 63/229 (27%)
Query: 44 LSPAAPALTELVAFDTADGVYDLAWSES-------HDSLLIAAVADGSVKIYDTALPPTA 96
+S + ++ ++ + T D V+ A E+ DS L++ DG+VK+++ T
Sbjct: 1019 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI---TG 1075
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
R H V S + + F ++S D T K+W+ D + + K H CV
Sbjct: 1076 RIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR--- 1131
Query: 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
CSA F + D L+A+ +
Sbjct: 1132 ---------CSA------------------------FSL--------DGILLATGDDNGE 1150
Query: 217 IKIWDVRNYRV-----PIAVLNG---HGYAVRKVKFSPHRRNLLASCSY 257
I+IW+V + ++ PI+V G HG V V FSP + L+++ Y
Sbjct: 1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY 1199
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
S+S D +++W+ + G + + AH+ + D+ D + S S D ++K+W+V R
Sbjct: 1020 SSSEDSVIQVWN-WQTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGR 1076
Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+ G + S + +S S D T +W F
Sbjct: 1077 IERDFTCHQGTVLSCAISSDATK--FSSTSADKTAKIWSF 1114
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 71 SHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY-NPTRRDSFITSSWDD 129
S DS + AD VKI+D+A T + + EH+ +V+ + N + T S D
Sbjct: 674 SDDSYIATCSADKKVKIWDSA---TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 730
Query: 130 TVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII- 188
+KLW +++ T H V + ++P ++ S S D TLR+WDVR I
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSIN 789
Query: 189 ----------PAHEFEIL--ACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHG 236
P + E++ C W+ D +I +A + ++D+ + + GH
Sbjct: 790 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLFDIHTSGLLAEIHTGHH 847
Query: 237 YAVRKVKFSPH 247
++ FSP+
Sbjct: 848 STIQYCDFSPY 858
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 13/186 (6%)
Query: 51 LTELVAFDTADGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREV 109
L+ LV D VY +S+ D IA+ AD +++++ T + + H EV
Sbjct: 613 LSRLVVRPHTDAVYHACFSQ--DGQRIASCGADKTLQVFKA---ETGEKLLDIKAHEDEV 667
Query: 110 HSADYNPTRRDSFI-TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW-NPRHSDVFCS 167
++ DS+I T S D VK+W V T+ EH+ V + N + + +
Sbjct: 668 LCCAFSSD--DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 725
Query: 168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NY 225
S D L++WD+ + + H + C ++ DD L+AS S D ++++WDVR N
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANE 784
Query: 226 RVPIAV 231
R I V
Sbjct: 785 RKSINV 790
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 48/278 (17%)
Query: 67 AWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSS 126
+WS D +++AA V ++D I + H T + D++P + I S
Sbjct: 812 SWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHST--IQYCDFSPYDHLAVIALS 867
Query: 127 WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---- 182
V+LW +D V + H V+ ++P S F +AS D T+R+W+ +++
Sbjct: 868 -QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNS 925
Query: 183 --------------GSTMIIPAHE---FEILACDWNKYD---------DCL------IAS 210
TM++ +++A + D CL +A
Sbjct: 926 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 270
D +IKI ++ N RV + + GH AVR ++F+ + L++S S D + +W++ D
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGD 1043
Query: 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 308
+ + T D +L + L S +D V VW
Sbjct: 1044 YVFLQAHQETV----KDFRLLQDSRLLSWSFDGTVKVW 1077
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 63/229 (27%)
Query: 44 LSPAAPALTELVAFDTADGVYDLAWSES-------HDSLLIAAVADGSVKIYDTALPPTA 96
+S + ++ ++ + T D V+ A E+ DS L++ DG+VK+++ T
Sbjct: 1026 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI---TG 1082
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
R H V S + + F ++S D T K+W+ D + + K H CV
Sbjct: 1083 RIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR--- 1138
Query: 157 WNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKS 216
CSA F + D L+A+ +
Sbjct: 1139 ---------CSA------------------------FSL--------DGILLATGDDNGE 1157
Query: 217 IKIWDVRNYRV-----PIAVLNG---HGYAVRKVKFSPHRRNLLASCSY 257
I+IW+V + ++ PI+V G HG V V FSP + L+++ Y
Sbjct: 1158 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY 1206
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
S+S D +++W+ + G + + AH+ + D+ D + S S D ++K+W+V R
Sbjct: 1027 SSSEDSVIQVWN-WQTGDYVFLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGR 1083
Query: 227 VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+ G + S + +S S D T +W F
Sbjct: 1084 IERDFTCHQGTVLSCAISSDATK--FSSTSADKTAKIWSF 1121
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 51 LTELVAFDTADGVYDLAWSESHDSLLIAAV-ADGSVKIYDTALPPTANPIRSLHEHTREV 109
L+ LV D VY +SE D IA+ AD +++++ T + + H EV
Sbjct: 612 LSRLVVRPHTDAVYHACFSE--DGQRIASCGADKTLQVFKA---ETGEKLLEIKAHEDEV 666
Query: 110 HSADYNPTRRDSFI-TSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW-NPRHSDVFCS 167
++ D FI T S D VK+W V T+ EH+ V + N H + +
Sbjct: 667 LCCAFSTD--DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 168 ASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR--NY 225
S DC L++WD+ + + H + C ++ DD L+AS S D ++K+WD N
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANE 783
Query: 226 RVPIAV 231
R I V
Sbjct: 784 RKSINV 789
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 46/161 (28%)
Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCL 207
H VY+A ++ + S D TL+++ + I AHE E+L C ++ DD
Sbjct: 620 HTDAVYHACFSEDGQRI-ASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-DDRF 677
Query: 208 IASASVDKSIKIWDVR-------------------------------------------N 224
IA+ SVDK +KIW+ N
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
+ + GH +V +FSP + LLASCS D T+ LWD
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWD 777
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 45 SPAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHE 104
+ L E+ A + D V A+S + D + D VKI+++ T + + E
Sbjct: 650 AETGEKLLEIKAHE--DEVLCCAFS-TDDRFIATCSVDKKVKIWNSM---TGELVHTYDE 703
Query: 105 HTREVHSADY-NPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163
H+ +V+ + N + T S D +KLW +++ T H V + ++P
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDK 762
Query: 164 VFCSASGDCTLRIWD-----------VREMGSTMIIPAHEFEIL--ACDWNKYDDCLIAS 210
+ S S D TL++WD V++ + P + E++ C W+ D I
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSA-DGARIMV 821
Query: 211 ASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPH 247
A+ +K I ++D+ + + GH ++ FSP
Sbjct: 822 AAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ 857
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132
+ LI++ D +++++ L L H V D+ + ++ S+D TVK
Sbjct: 1021 EKTLISSSDDAEIQVWNWQLDKCI----FLRGHQETV--KDFRLLKNSRLLSWSFDGTVK 1074
Query: 133 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHE 192
+W + + F H V + + + F S S D T +IW +++P HE
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSSTSADKTAKIWSF-----DLLLPLHE 1128
Query: 193 FE----ILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----PIAVLNG--HGYAVRK 241
+ C D L+A+ + I+IW+V N + P++ HG V
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 242 VKFSPHRRNLLASCSY 257
+ FSP + L+++ Y
Sbjct: 1189 LCFSPDGKMLISAGGY 1204
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 27/242 (11%)
Query: 72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
+ L + A++ V++++T + + + H VH ++P SF+TSS D T+
Sbjct: 857 QNHLAVVALSQYCVELWNT---DSRSKVADCRGHLSWVHGVMFSPDG-SSFLTSSDDQTI 912
Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM----GSTMI 187
+LW + C +A + DV + L + +R + G T
Sbjct: 913 RLWETKK-----------VCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQ 961
Query: 188 IP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP 246
I E ++ C + + IA + +I+I ++ N R+ + H V ++F+
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQ-HKKTVWHIQFTA 1019
Query: 247 HRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVY 306
+ L++S S D + +W++ ++ + R T D +L L S +D V
Sbjct: 1020 DEKTLISS-SDDAEIQVWNWQLDKCIFLRGHQET----VKDFRLLKNSRLLSWSFDGTVK 1074
Query: 307 VW 308
VW
Sbjct: 1075 VW 1076
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++++ D +K +I S S DK
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 74 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDK-K 118
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + + L+
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA-MYTLS 235
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED 270
V + FSP+R L A+ + + V D ++V+D
Sbjct: 236 AQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD 273
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++++ D +K +I S S DK
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 74 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDK-K 118
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + + L+
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA-MYTLS 235
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED---ALVGRYDHHTEFAVGVDM 288
V + FSP+R L A+ + + V D ++V+D G AV +
Sbjct: 236 AQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 289 SVLVEGLLASTGWDELVYVWQ 309
S + L A D ++ VWQ
Sbjct: 295 SADGQTLFAGYT-DNVIRVWQ 314
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++++ D +K +I S S DK
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 74 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDK-K 118
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + + L+
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA-MYTLS 235
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED---ALVGRYDHHTEFAVGVDM 288
V + FSP+R L A+ + + V D ++V+D G AV +
Sbjct: 236 AQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 289 SVLVEGLLASTGWDELVYVWQ 309
S + L A D ++ VWQ
Sbjct: 295 SADGQTLFAGYT-DNVIRVWQ 314
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++++ D +K +I S S DK
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 74 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDK-K 118
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 119 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + + L+
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA-MYTLS 235
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED---ALVGRYDHHTEFAVGVDM 288
V + FSP+R L A+ + + V D ++V+D G AV +
Sbjct: 236 AQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 289 SVLVEGLLASTGWDELVYVWQ 309
S + L A D ++ VWQ
Sbjct: 295 SADGQTLFAGYT-DNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++++ D +K +I S S DK
Sbjct: 66 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDK 123
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 124 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 182 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIMLWN 218
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 68 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVMSVDIDK-K 112
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 113 ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + + L+
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA-MYTLS 229
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED---ALVGRYDHHTEFAVGVDM 288
V + FSP+R L A+ + + V D ++V+D G AV +
Sbjct: 230 AQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 288
Query: 289 SVLVEGLLASTGWDELVYVWQ 309
S + L A D ++ VWQ
Sbjct: 289 SADGQTLFAGYT-DNVIRVWQ 308
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 16/204 (7%)
Query: 69 SESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWD 128
S+ D+++I+ D ++K+++ T I +L+ HT V + R ++ S D
Sbjct: 165 SQMRDNIIISGSTDRTLKVWN---AETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRD 218
Query: 129 DTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII 188
T+++W ++ + H V ++ R S + D +++WD +
Sbjct: 219 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTL 275
Query: 189 PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHR 248
H + + ++D + S S+D SI++WDV I L GH ++ +
Sbjct: 276 QGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMEL---K 328
Query: 249 RNLLASCSYDMTVCLWDFMVEDAL 272
N+L S + D TV +WD L
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCL 352
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD-VFCSASGDCTLRIWD 178
+ ++ S D+T+K+W+ +RT H W+ + D + S S D TL++W+
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT----GGVWSSQMRDNIIISGSTDRTLKVWN 185
Query: 179 VREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYA 238
+ H + ++ + S S D ++++WD+ + + VL GH A
Sbjct: 186 AETGECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQC-LHVLMGHVAA 241
Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
VR V++ R + S +YD V +WD E L
Sbjct: 242 VRCVQYDGRR---VVSGAYDFMVKVWDPETETCL 272
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 70 ESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDD 129
E D++L++ AD +VKI+D ++ ++H V +N ++ ITSS D
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDG 382
Query: 130 TVKLWTVDRPTSVRTF 145
TVKLW + +R
Sbjct: 383 TVKLWDLKTGEFIRNL 398
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHS 162
H V + + P F +SS+D T+K+W + + V F+E Y + + + +H
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 163 DVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV 222
V G +++ D++ + I+ H EILA W+ D ++A+AS D +K+WDV
Sbjct: 158 LVAVGTRGP-KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 223 RNYRVPIAVLNGH 235
R + L+ H
Sbjct: 217 RRASGCLITLDQH 229
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI------IPAHEFEILACDWN 201
H Y V W P + +F S+S D TL++WD + + + + +H ++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK-- 155
Query: 202 KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTV 261
CL+A + +++ D+++ +L GH + V +SP +LA+ S D V
Sbjct: 156 ---HCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 262 CLWDFMVEDALVGRYDHH 279
LWD + D H
Sbjct: 212 KLWDVRRASGCLITLDQH 229
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS-----VRTFKEHAYCVYNA 155
+L H V S + + + +++S D T+ W + VR+FK H++ V +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 156 TWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDK 215
T + SAS D TLR+WDV + H+ ++ + D +K +I S S DK
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDK 129
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRN-----LLASCSYDMTVCLWD---FM 267
+IK+W ++ +A L GH V +V+ P+ + + S D V W+ F
Sbjct: 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 268 VEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
+E +G + D + L+AS G D + +W
Sbjct: 188 IEADFIGHNSNINTLTASPDGT-----LIASAGKDGEIXLWN 224
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 102/261 (39%), Gaps = 30/261 (11%)
Query: 59 TADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTR 118
TADG Y L+ A D +++++D A T + H +V S D + +
Sbjct: 74 TADGAYALS-----------ASWDKTLRLWDVA---TGETYQRFVGHKSDVXSVDIDK-K 118
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH-----SDVFCSASGDCT 173
I+ S D T+K+WT+ + + T H V P S SA D
Sbjct: 119 ASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 174 LRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLN 233
++ W++ + H I + D LIASA D I +W++ + +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTL-- 234
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD--FMVED---ALVGRYDHHTEFAVGVDM 288
V + FSP+R L A+ + + V D ++V+D G AV +
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 289 SVLVEGLLASTGWDELVYVWQ 309
S + L A D ++ VWQ
Sbjct: 295 SADGQTLFAGYT-DNVIRVWQ 314
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
GV+ L ++ H +L++ D +V+++D + + R + +Y +
Sbjct: 164 GVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-- 219
Query: 122 FITSSWDDTVKLWTVDRPTSVRTF-KEHAY--CVYNATWNP-----------------RH 161
+T S D+T+ +W + + +SV +EH Y + NP H
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279
Query: 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIW 220
++ S S D TL +WDV +M I+ H I + ++ + C+ SAS+D +I+IW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDTTIRIW 337
Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
D+ N + + L GH V ++ S L S + D ++ WD
Sbjct: 338 DLENGEL-MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWD 378
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 12/196 (6%)
Query: 73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRR-DSFITSSWDDTV 131
D ++ A DG+ ++D + ++S H H +V D P+ ++F++ D
Sbjct: 166 DMQILTASGDGTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH 191
+W + V+ F+ H V + + P D F S S D T R++D+R I
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKE 281
Query: 192 E--FEILACDWNKYDDCLIASASVDKSIKIWDV-RNYRVPIAVLNGHGYAVRKVKFSPHR 248
F + D++ L A + D +I +WDV + RV I L GH V ++ SP
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSI--LFGHENRVSTLRVSPD- 337
Query: 249 RNLLASCSYDMTVCLW 264
S S+D T+ +W
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 167 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC-LIASASVDKSIKIWDVRNY 225
+ASGD T +WDV H ++L D + S DK +WD+R+
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 226 RVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+ + H V V++ P + AS S D T L+D
Sbjct: 231 QC-VQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDL 269
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 165 FCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
+ + D +RIWD+ MI+ HE +I + D+ D L+ S S D++++IWD+R
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRT 196
Query: 225 YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD----FMVEDALVGRYDHHT 280
+ + + G V V SP +A+ S D V +WD F+VE R D
Sbjct: 197 GQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-----RLDSEN 249
Query: 281 EFAVGVDMSV 290
E G SV
Sbjct: 250 ESGTGHKDSV 259
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 73 DSLLIAAVADGSVKIYD-TALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
D L+A ++D S D L +++P L+ + S ++P + T + D +
Sbjct: 94 DGSLVARLSDDSAANKDPENLNTSSSPSSDLY-----IRSVCFSPDGK-FLATGAEDRLI 147
Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH 191
++W ++ V + H +Y+ + P D S SGD T+RIWD+R G + +
Sbjct: 148 RIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLR-TGQCSLTLSI 205
Query: 192 EFEILACDWNKYDDCLIASASVDKSIKIWD------VRNYRVPIAVLNGHGYAVRKVKFS 245
E + + D IA+ S+D+++++WD V GH +V V F+
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 246 PHRRNLLASCSYDMTVCLWDFM 267
++++ S S D +V LW+
Sbjct: 266 RDGQSVV-SGSLDRSVKLWNLQ 286
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 102 LHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRH 161
L H ++++S DY P+ D ++ S D TV++W + T V +P
Sbjct: 161 LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGD 218
Query: 162 SDVFCSASGDCTLRIWD------VREMGS-TMIIPAHEFEILACDWNKYDDCLIASASVD 214
+ S D +R+WD V + S H+ + + + + D + S S+D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLD 277
Query: 215 KSIKIWDVRN 224
+S+K+W+++N
Sbjct: 278 RSVKLWNLQN 287
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 61 DGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYN----- 115
D VY + ++ S++ ++ D SVK+++ + ++ + T EV +
Sbjct: 257 DSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 116 --PTRRDSFITS-SWDDTVKLWTVDRPTSVRTFKEH-----AYCVYNATWNPRHSDVFCS 167
T+ D +I S S D V W + + H + V N + +VF +
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 168 ASGDCTLRIWDVREM 182
SGDC RIW +++
Sbjct: 376 GSGDCKARIWKYKKI 390
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
P R L H+ V +D + +F +++SWD +++LW + F H V +
Sbjct: 59 PDRRLEGHSAFV--SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA 116
Query: 157 WNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIPAHEFEILACDWN-KYDDCLIASASVD 214
++P + + S D LR+W+V+ E T+ AH + ++ D +I S D
Sbjct: 117 FSPDNRQIV-SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
+K+WD+ R+ + L GH V V SP +L AS D LWD +AL
Sbjct: 176 NLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWDLTKGEAL 231
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 210 SASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269
SAS D S+++W+++N + L GH V V FSP R ++ S D + +W+ E
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGE 141
Query: 270 DALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 308
HT++ V S ++ ++ S GWD LV VW
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 105 HTREVHSADYNPTRRDSFITSS-WDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD 163
HT V ++P+ I S WD+ VK+W + V K H V + T +P S
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS- 209
Query: 164 VFCSASGDCTLRIWDVR--EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWD 221
+ S+ D R+WD+ E S M A +I N+Y C A+ +K I+I+D
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP-NRYWMC----AATEKGIRIFD 264
Query: 222 VRNYRVPIAVLNGH 235
+ N + + + H
Sbjct: 265 LENKDIIVELAPEH 278
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
+T D + L+ D +VRT +A R ++ + + L+IWD R+
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEIL-TVNSIGQLKIWDFRQ 221
Query: 182 MGST----MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
G+ + + + D + ++A+ D + IWDVR +P+++L H
Sbjct: 222 QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEA 281
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWD 265
+ +V F P L +CS D ++ WD
Sbjct: 282 EMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-- 180
++ S D +K+W + + + +++ HA V +P VF S S D + +WD R
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
+ S + A + + W+ + + ++ + D ++ VL+ H
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---VLSSAVHSQC 259
Query: 239 VRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLAS 298
V + FSPH LAS S D ++ + D + + R H +F S L LL +
Sbjct: 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--RSQAHRDFVRDATWSPLNHSLLTT 317
Query: 299 TGWDELV 305
GWD V
Sbjct: 318 VGWDHQV 324
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYDDCLIASASV 213
NP+ + C ASG + + + G + ++ H +L W ++D +IAS S
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102
Query: 214 DKSIKIWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
D ++ +W++ + R P+ L GH V V + P +N+L S D + +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYNPTR 118
V D+AW +D+++ + D +V +++ + P P+ +L HT+ V ++PT
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRI 176
++ +++ D+ + +W V +V T H +Y+ W+ R + C++ D +R+
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202
Query: 177 WDVREMGSTMII----------PAH-----EFEILACDWNKYDDCLIASASVDKSIKIWD 221
+ R+ T++ P H E +IL +++ ++ + +WD
Sbjct: 203 IEPRK--GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS---------ERQVALWD 251
Query: 222 VRNYRVPIAV 231
++ P+++
Sbjct: 252 TKHLEEPLSL 261
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-------STMIIPAHEFEILACDW 200
H V + W P + +V S S DCT+ +W++ + G + + H + W
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 201 NKYDDCLIASASVDKSIKIWDV 222
+ ++ SA D I +WDV
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV 161
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF------MVEDALVGRYDHHTEF 282
+ ++ GH V + + PH N++AS S D TV +W+ + V + HT+
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 283 AVGVDMSVLVEGLLASTGWDELVYVWQQG 311
V + +L S G D ++ VW G
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 62 GVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDS 121
GV+ L ++ H +L++ D +V+++D + + R + +Y +
Sbjct: 164 GVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-- 219
Query: 122 FITSSWDDTVKLWTVDRPTSVRTF-KEHAY--CVYNATWNP-----------------RH 161
+T S D+T+ +W + + +SV +EH Y + NP H
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH 279
Query: 162 SDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIW 220
++ S S D TL +WDV + I+ H I + ++ + C+ SAS D +I+IW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI--SASXDTTIRIW 337
Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
D+ N + L GH V ++ S L S + D ++ WD
Sbjct: 338 DLENGELXYT-LQGHTALVGLLRLSD---KFLVSAAADGSIRGWD 378
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMG----STMIIPAHEFEILACDWNKYDDCLIASASV 213
NP+ + ASG + + + G + ++ H +L W ++D +IAS S
Sbjct: 43 NPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSE 102
Query: 214 DKSIKIWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
D ++ +W++ + R P+ L GH V V + P +N+L S D + +WD
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTA----LPPTANPIRSLHEHTREVHSADYNPTR 118
V D+AW +D+++ + D +V +++ + P P+ +L HT+ V ++PT
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 119 RDSFITSSWDDTVKLWTVDRPTSVRTFKE--HAYCVYNATWNPRHSDVFCSASGDCTLRI 176
++ +++ D+ + +W V +V T H +Y+ W+ R + C++ D +R+
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202
Query: 177 WDVREMGSTMII----------PAH-----EFEILACDWNKYDDCLIASASVDKSIKIWD 221
+ R+ T++ P H E +IL +++ ++ + +WD
Sbjct: 203 IEPRK--GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS---------ERQVALWD 251
Query: 222 VRNYRVPIAV 231
++ P+++
Sbjct: 252 TKHLEEPLSL 261
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 148 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG-------STMIIPAHEFEILACDW 200
H V + W P + +V S S DCT+ +W++ + G + + H + W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 201 NKYDDCLIASASVDKSIKIWDV 222
+ ++ SA D I +WDV
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV 161
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 229 IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF------MVEDALVGRYDHHTEF 282
+ ++ GH V + + PH N++AS S D TV +W+ + V + HT+
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 283 AVGVDMSVLVEGLLASTGWDELVYVWQQG 311
V + +L S G D ++ VW G
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
LAW+ + +LL + D ++I+ T H R V ++P + ++
Sbjct: 22 LAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASA 79
Query: 126 SWDDTVKLWTVDRP--TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMG 183
S+D T +W ++ V T + H V + W P ++ + S D ++ +W+V E
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEED 138
Query: 184 S---TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW-DVRNYRVPIAVLNGHGYAV 239
++ +H ++ W+ + L+ASAS D ++K++ + + V A L GH V
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197
Query: 240 RKVKFSPHRRNLLASCSYDMTVCLW 264
+ F P + L ASCS D TV +W
Sbjct: 198 WSLAFDPSGQRL-ASCSDDRTVRIW 221
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 157 WNPRHSDVFCSASGDCTLRIWDVRE---MGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
WNP + + S GD +RIW + +++ H+ + W+ + +ASAS
Sbjct: 24 WNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASF 81
Query: 214 DKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED-- 270
D + IW + L GH V+ V ++P NLLA+CS D +V +W+ ED
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 271 ALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 313
V + HT+ V E LLAS +D+ V ++++ D
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEED 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 30/236 (12%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V +AW+ S + LL D SV +++ + L+ HT++V ++P++ +
Sbjct: 108 VKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELL 165
Query: 123 ITSSWDDTVKLW--TVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
++S+DDTVKL+ D T + H V++ ++P S S D T+RIW
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQY 224
Query: 181 EMGSTMIIPA----------------HEFEILACDWNKYDDCLIASASVDKSIKIWDVR- 223
G+ + H I W + L A+A D +I+++
Sbjct: 225 LPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL-ATACGDDAIRVFQEDP 283
Query: 224 -------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
+ + + H V V ++P LLASCS D V W + + L
Sbjct: 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 46 PAAPALTELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIR---SL 102
P+ + L F + +YD+AW + +L A D +++++ P ++P + SL
Sbjct: 239 PSWKCICTLSGFHSRT-IYDIAWCQLTGAL-ATACGDDAIRVFQE--DPNSDPQQPTFSL 294
Query: 103 HEHTREVHSAD-----YNPTRRDSFITSSWDDTVKLWTVDRPTSV 142
H + HS D +NP + S D V W RP +
Sbjct: 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
++ SWD ++LW + S R F H V + ++ + + SAS D T+++W+
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGE 504
Query: 183 GSTMIIPAHEFEILACDW--------NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG 234
I E DW N ++ SAS DK++K+W++ N ++ + L G
Sbjct: 505 CKYTISEGGEGH---RDWVSCVRFSPNTLQPTIV-SASWDKTVKVWNLSNCKLR-STLAG 559
Query: 235 HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
H V V SP +L AS D V LWD
Sbjct: 560 HTGYVSTVAVSPD-GSLCASGGKDGVVLLWDL 590
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTRE-VHSADYNP-TRRDSFITSSWDDTVKL 133
+++A D ++K+++T L I E R+ V ++P T + + +++SWD TVK+
Sbjct: 487 IVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 134 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCTLRIWDVREMGSTMIIPAHE 192
W + T H V +P S C++ G D + +WD+ E + A+
Sbjct: 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGS--LCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Query: 193 -FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV 227
L N+Y C A+ + IKIWD+ + +
Sbjct: 604 VIHALCFSPNRYWLC----AATEHGIKIWDLESKSI 635
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 207 LIASASVDKSIKIW----DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVC 262
+I SAS DKSI +W D + Y V L GH + V V S + L S S+D +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELR 455
Query: 263 LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 309
LWD + R+ HT+ + V S L + S D + +W
Sbjct: 456 LWD-LAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWN 500
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRRD 120
V +A + ++++A D ++ ++ T P R+L H+ V +D +
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--SDVVISSDG 98
Query: 121 SF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
F ++ SWD T++LW + T+ R F H V + ++ + + S S D T+++W+
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNT 157
Query: 180 REMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
+ + E ++C + +I S DK +K+W++ N ++ + GY
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+ V SP +L AS D LWD
Sbjct: 218 -LNTVTVSPD-GSLCASGGKDGQAMLWDL 244
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE----ILACD 199
T K H V P+ D+ SAS D T+ +W + + IP ++
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
D S S D ++++WD+ + GH V V FS R ++ S S D
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIV-SGSRDK 150
Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
T+ LW+ + + + H+E+ V S ++ S GWD+LV VW
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPT--ANPIRSLHEHTREVHSADYNPTRRD 120
V +A + ++++A D ++ ++ T P R+L H+ V +D +
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--SDVVISSDG 75
Query: 121 SF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
F ++ SWD T++LW + T+ R F H V + ++ + + S S D T+++W+
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNT 134
Query: 180 REMGSTMIIPAHEFEILACDW--NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY 237
+ + E ++C + +I S DK +K+W++ N ++ + GY
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 194
Query: 238 AVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
+ V SP +L AS D LWD
Sbjct: 195 -LNTVTVSPD-GSLCASGGKDGQAMLWDL 221
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 144 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFE----ILACD 199
T K H V P+ D+ SAS D T+ +W + + IP ++
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDM 259
D S S D ++++WD+ + GH V V FS R ++ S S D
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIV-SGSRDK 127
Query: 260 TVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ 309
T+ LW+ + + + H+E+ V S ++ S GWD+LV VW
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 208 IASASVDKSIKIWDVRNY-RVPIAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
+A+ S D+S+KI+DVRN ++ IA L GH V +V ++ P N+LASCSYD V +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 165 FCSASGDCTLRIWDVREMGSTMI--IPAHEFEILACDWNK--YDDCLIASASVDKSIKIW 220
+ S D +++I+DVR G +I + HE + W Y + ++AS S D+ + IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIW 86
Query: 221 DVRNYRVPIAVLN-GHGYAVRKVKFSPHRRNLLASC-SYDMTVCLWDFMVE 269
N + + GH +V V ++PH L+ +C S D + L + E
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 24/173 (13%)
Query: 162 SDVFCSASGDCTLRIWDV--REMGSTMIIP-------AHEFEILACDWNKYDDCLIASAS 212
S V S S D T+ IW + E IP H LA ++C S+S
Sbjct: 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS---QENCFAISSS 95
Query: 213 VDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
DK++++WD+R GH V V FSP R +L S + + LW+ + E
Sbjct: 96 WDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKF 153
Query: 273 -VGRYDHHTEFAVGVDMSVLVEG---------LLASTGWDELVYVWQQGMDPR 315
++H+++ V S +++ AS GWD + VW R
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 63 VYDLAWSESHDS-LLIAAVADGSVKIYDTALPPTAN----PIRSLHEHTREVHSADYNPT 117
V + E+ DS +LI+ D +V I+ P ++L H V +D +
Sbjct: 28 VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV--SDLALS 85
Query: 118 RRDSF-ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRI 176
+ + F I+SSWD T++LW + T+ + F H VY+ ++P + + SA + +++
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKL 144
Query: 177 WDVREMGSTMIIPAHE-----------FEILACDWNKYDDC--LIASASVDKSIKIWDVR 223
W++ +G A + + + NK AS D +K+W+
Sbjct: 145 WNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT- 201
Query: 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM 267
N+++ H V + SP+ + +A+ D + +WD +
Sbjct: 202 NFQIRY-TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDIL 243
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSF 122
V DLA S+ + I++ D +++++D T + H EV+S ++P R
Sbjct: 79 VSDLALSQ-ENCFAISSSWDKTLRLWDLR---TGTTYKRFVGHQSEVYSVAFSPDNRQ-I 133
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD------------------- 163
+++ + +KLW + C +++ HSD
Sbjct: 134 LSAGAEREIKLWNI-----------LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP 182
Query: 164 ---VFCSASGDCTLRIWDVREMGSTMIIPAHEFEI--LACDWN-KYDDCLIASASVDKSI 217
F S D L++W+ AHE + L+ N KY IA+ DK +
Sbjct: 183 FAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKY----IATGGKDKKL 237
Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 269
IWD+ N P + G + ++ F+P + + D V +++ M +
Sbjct: 238 LIWDILNLTYPQREFDA-GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMTQ 286
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
+ +TSS D T LW ++ TF H V + + P + +F S + D + ++WDV
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 224
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
RE HE +I A + + A+ S D + +++D+R + + + +
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 283
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
+ V FS R LLA YD C +WD + D H + + V +G+
Sbjct: 284 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 338
Query: 298 STG-WDELVYVWQ 309
+TG WD + +W
Sbjct: 339 ATGSWDSFLKIWN 351
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 13/183 (7%)
Query: 87 IYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFK 146
+ + L L R+ A + T S IT++ D ++ R RT +
Sbjct: 10 LLQSELDQLRQEAEQLKNQIRDARKACADATL--SQITNNIDPVGRIQMRTR----RTLR 63
Query: 147 EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDC 206
H +Y W S + SAS D L IWD IP ++ C + +
Sbjct: 64 GHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN- 121
Query: 207 LIASASVDKSIKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDMTVCL 263
+A +D I++++ + V L GH + +F N + + S D T L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCAL 179
Query: 264 WDF 266
WD
Sbjct: 180 WDI 182
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
+ +TSS D T LW ++ TF H V + + P + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
RE HE +I A + + A+ S D + +++D+R + + + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
+ V FS R LLA YD C +WD + D H + + V +G+
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
+TG WD + +W
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202
RT + H +Y W S + SAS D L IWD IP ++ C +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 203 YDDCLIASASVDKSIKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDM 259
+ +A +D I++++ + V L GH + +F N + + S D
Sbjct: 108 SGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDT 164
Query: 260 TVCLWDF 266
T LWD
Sbjct: 165 TCALWDI 171
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
+ +TSS D T LW ++ TF H V + + P + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-NYRVPIAVLNGHGYA 238
RE HE +I A + + A+ S D + +++D+R + + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
+ V FS R LLA YD C +WD + D H + + V +G+
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
+TG WD + +W
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202
RT + H +Y W S + SAS D L IWD IP ++ C +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 203 YDDCLIASASVDKSIKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDM 259
+ +A +D I++++ + V L GH + +F N + + S D
Sbjct: 108 SGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDT 164
Query: 260 TVCLWDF 266
T LWD
Sbjct: 165 TCALWDI 171
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
+ +TSS D T LW ++ TF H V + + P + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
RE HE +I A + + A+ S D + +++D+R + + + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
+ V FS R LLA YD C +WD + D H + + V +G+
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
+TG WD + +W
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202
RT + H +Y W S + SAS D L IWD IP ++ C +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 203 YDDCLIASASVDKSIKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDM 259
+ +A +D I++++ + V L GH + +F N + + S D
Sbjct: 108 SGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDT 164
Query: 260 TVCLWDF 266
T LWD
Sbjct: 165 TCALWDI 171
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 10/193 (5%)
Query: 120 DSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDV 179
+ +TSS D T LW ++ TF H V + + P + +F S + D + ++WDV
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDV 213
Query: 180 REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGY-A 238
RE HE +I A + + A+ S D + +++D+R + + + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 239 VRKVKFSPHRRNLLASCSYDMTVC-LWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLA 297
+ V FS R LLA YD C +WD + D H + + V +G+
Sbjct: 273 ITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSC---LGVTDDGMAV 327
Query: 298 STG-WDELVYVWQ 309
+TG WD + +W
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 143 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNK 202
RT + H +Y W S + SAS D L IWD IP ++ C +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 203 YDDCLIASASVDKSIKIWDVRNYRVPIAV---LNGHGYAVRKVKFSPHRRNLLASCSYDM 259
+ +A +D I++++ + V L GH + +F N + + S D
Sbjct: 108 SGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDT 164
Query: 260 TVCLWDF 266
T LWD
Sbjct: 165 TCALWDI 171
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 88/213 (41%), Gaps = 7/213 (3%)
Query: 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
++ + G V+I++ T +RS+ V + + R++ I S D ++++
Sbjct: 28 VLTTLYSGRVEIWNY---ETQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
+ V F+ H + + +P V S S D T+++W+ HE
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
++ +N D AS +D+++K+W + + G V V + P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV 286
+ S D+T+ +WD+ + + H + + V
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV 235
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 103 HEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRTFKEHAYCVYNATWNPR 160
HEH V +NP +F + D TVK+W++ + P T + Y +
Sbjct: 139 HEHF--VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW 220
+AS D T++IWD + + H + ++ +I S S D ++KIW
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKIW 255
Query: 221 DVRNYRV 227
+ Y+V
Sbjct: 256 NSSTYKV 262
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
++ + V D++PT +T+ + V++W + VR+ + V +
Sbjct: 7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
R + + S D +R+++ + AH I + + ++ S S D ++K+
Sbjct: 66 RKNWIIV-GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKL 123
Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 264
W+ N GH + V V F+P + AS D TV +W
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 222 VRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
V NY V++ H +R + P + +L S S D+TV LW++ AL ++ H
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
F + V + AS D V VW G
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 24/238 (10%)
Query: 52 TELVAFDTADG----VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTR 107
T+LV T G VY L W+ + +++A DG + +++ T+ ++ H
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNAL---TSQKTHAIKLHCP 109
Query: 108 EVHSADYNPTRRDSFITSSWDDTVKLWTV----DRPTSV---RTFKEHAYCVYNATWNPR 160
V + P + S D ++ + DR ++ R H + + P
Sbjct: 110 WVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEF------EILACDWNKYDDCLIASASVD 214
+ SGD T +WDV G + I EF ++L+ N + + S S D
Sbjct: 169 QETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 215 KSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL 272
++++WD+R + +GH + VKF P + + S D T L+D L
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQL 284
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 59/258 (22%)
Query: 1 MPVFK--TPFNGY--SVKFSPFYESRLAVATAQNFGIL----GNGRVHVLDLSPAAPALT 52
MPV + T GY S ++ P E+RL + +L R+ + +
Sbjct: 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG--------S 198
Query: 53 ELVAFDTADGVYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSA 112
E + TAD V L+ + + ++ I+ D +V+++D L T+ +R+ H H +++S
Sbjct: 199 EFPSGHTAD-VLSLSINSLNANMFISGSCDTTVRLWD--LRITSRAVRTYHGHEGDINSV 255
Query: 113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSD--------- 163
+ P + F T S D T +L+ +RT H VYN P +D
Sbjct: 256 KFFPDGQ-RFGTGSDDGTCRLF------DMRT--GHQLQVYNR--EPDRNDNELPIVTSV 304
Query: 164 --------VFCS-ASGDCTLRIWD------VREMGSTMIIPAHEFEILACDWNKYDDCLI 208
+F ++GDC +WD V +G+ + +HE I +C D +
Sbjct: 305 AFSISGRLLFAGYSNGDC--YVWDTLLAEMVLNLGT--LQNSHEGRI-SCLGLSSDGSAL 359
Query: 209 ASASVDKSIKIWDVRNYR 226
+ S DK++KIW +R
Sbjct: 360 CTGSWDKNLKIWAFSGHR 377
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
Query: 95 TANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYN 154
T +RS+ V + + R++ I S D ++++ + V F+ H + +
Sbjct: 44 TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRS 102
Query: 155 ATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFEILACDWNKYDDCLIASASV 213
+P V S S D T+++W+ HE ++ +N D AS +
Sbjct: 103 IAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 214 DKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLASCSYDMTVCLWDFMVEDAL 272
D+++K+W + + G V V + P + + + S D+T+ +WD+ + +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 273 VGRYDHHTEFAVGV 286
H + + V
Sbjct: 222 ATLEGHMSNVSFAV 235
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRTFKEHAYCVYNATW 157
++ H V +NP +F + D TVK+W++ + P T + Y +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
+AS D T++IWD + + H + ++ +I S S D ++
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTL 252
Query: 218 KIWDVRNYRV 227
KIW+ Y+V
Sbjct: 253 KIWNSSTYKV 262
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 3/165 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
++ + V D++PT +T+ + V+LW + VR+ + V +
Sbjct: 7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
R + + S D +R+++ + AH I + + ++ S S D ++K+
Sbjct: 66 RKNWIIV-GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKL 123
Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 264
W+ N GH + V V F+P + AS D TV +W
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 222 VRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
V NY V++ H +R + P + +L S S D+TV LW++ AL ++ H
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
F + V + AS D V VW G
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 10/224 (4%)
Query: 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
++ + G V++++ T +RS+ V + + R++ I S D ++++
Sbjct: 28 VLTTLYSGRVELWNYE---TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
+ V F+ H + + +P V S S D T+++W+ HE
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
++ +N D AS +D+++K+W + + G V V + P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV---DMSVLVEG 294
+ S D+T+ +WD+ + + H + + V + +++ G
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRTFKEHAYCVYNATW 157
++ H V +NP +F + D TVK+W++ + P T + Y +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
+AS D T++IWD + + H + ++ +I S S D ++
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTL 252
Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS 254
KIW+ Y+V + G + R+N +AS
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
++ + V D++PT +T+ + V+LW + VR+ + V +
Sbjct: 7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
R + + S D +R+++ + AH I + + ++ S S D ++K+
Sbjct: 66 RKNWIIV-GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKL 123
Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
W+ N GH + V V F+P + AS D TV +W
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 222 VRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
V NY V++ H +R + P + +L S S D+TV LW++ AL ++ H
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
F + V + AS D V VW G
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 10/224 (4%)
Query: 76 LIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWT 135
++ + G V++++ T +RS+ V + + R++ I S D ++++
Sbjct: 28 VLTTLYSGRVELWNYE---TQVEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFN 83
Query: 136 VDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFE 194
+ V F+ H + + +P V S S D T+++W+ HE
Sbjct: 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHF 142
Query: 195 ILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSP-HRRNLLA 253
++ +N D AS +D+++K+W + + G V V + P + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 254 SCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGV---DMSVLVEG 294
+ S D+T+ +WD+ + + H + + V + +++ G
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDR--PTSVRTFKEHAYCVYNATW 157
++ H V +NP +F + D TVK+W++ + P T + Y +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 158 NPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSI 217
+AS D T++IWD + + H + ++ +I S S D ++
Sbjct: 194 PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTL 252
Query: 218 KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLAS 254
KIW+ Y+V + G + R+N +AS
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
Query: 100 RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNP 159
++ + V D++PT +T+ + V+LW + VR+ + V +
Sbjct: 7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
R + + S D +R+++ + AH I + + ++ S S D ++K+
Sbjct: 66 RKNWIIV-GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKL 123
Query: 220 WDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
W+ N GH + V V F+P + AS D TV +W
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 222 VRNYRVPIAVLN--GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH 279
V NY V++ H +R + P + +L S S D+TV LW++ AL ++ H
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 280 TEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 312
F + V + AS D V VW G
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 19/192 (9%)
Query: 123 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
++ D +VK+W + + ++++ H+ V P +F S D + +WD R+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 183 GSTMIIPAHEFEILACD-------WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG- 234
PA + A D W+ D A ++ + +++N P +
Sbjct: 215 K-----PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTSA 266
Query: 235 -HGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVE 293
H + + +S H LAS S D TV + D + R H +F GV S L
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF--RDLSHRDFVTGVAWSPLDH 324
Query: 294 GLLASTGWDELV 305
+ GWD V
Sbjct: 325 SKFTTVGWDHKV 336
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
LAW +H S + G + +++ + I+ + + +NP + F S
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 184
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
S + T +L + +R F +C + + + R V G+ L D +
Sbjct: 185 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 242
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
E+ + + H+ ++ N D +A+ASVD+++KIWD+R R + L H +
Sbjct: 243 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 299
Query: 239 VRKVKFSPHRRNLLAS 254
V FSP LL +
Sbjct: 300 VNAACFSPDGARLLTT 315
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 23/172 (13%)
Query: 107 REVHSADYNPTRRDSFITSSWDDTVKLWTV---DRPTSVRTFKEHAYCVYNATWNPRHSD 163
R S ++PT + S + LW D+PT ++ + +NP +++
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTN 179
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC--DWNKYDDCLIASASVDKSI---- 217
F ++S + T R+ D + + + I C D + ++ +V I
Sbjct: 180 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 239
Query: 218 ---KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++W++R H V V +P LA+ S D TV +WD
Sbjct: 240 DGKELWNLRM----------HKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
LAW +H S + G + +++ + I+ + + +NP + F S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
S + T +L + +R F +C + + + R V G+ L D +
Sbjct: 184 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 241
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
E+ + + H+ ++ N D +A+ASVD+++KIWD+R R + L H +
Sbjct: 242 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 239 VRKVKFSPHRRNLLAS 254
V FSP LL +
Sbjct: 299 VNAACFSPDGARLLTT 314
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 23/172 (13%)
Query: 107 REVHSADYNPTRRDSFITSSWDDTVKLWTV---DRPTSVRTFKEHAYCVYNATWNPRHSD 163
R S ++PT + S + LW D+PT ++ + +NP +++
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTN 178
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC--DWNKYDDCLIASASVDKSI---- 217
F ++S + T R+ D + + + I C D + ++ +V I
Sbjct: 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238
Query: 218 ---KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++W++R H V V +P LA+ S D TV +WD
Sbjct: 239 DGKELWNLRM----------HKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 66 LAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITS 125
LAW +H S + G + +++ + I+ + + +NP + F S
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTNQFYAS 183
Query: 126 SWDDTVKLWTVDRPTSVRTFKEHA-----YCVYNATWNPRHSDVFCSASGDCTLRIWDVR 180
S + T +L + +R F +C + + + R V G+ L D +
Sbjct: 184 SMEGTTRLQDF-KGNILRVFASSDTINIWFCSLDVSASSRMV-VTGDNVGNVILLNMDGK 241
Query: 181 EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNG--HGYA 238
E+ + + H+ ++ N D +A+ASVD+++KIWD+R R + L H +
Sbjct: 242 ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP 298
Query: 239 VRKVKFSPHRRNLLAS 254
V FSP LL +
Sbjct: 299 VNAACFSPDGARLLTT 314
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 23/172 (13%)
Query: 107 REVHSADYNPTRRDSFITSSWDDTVKLWTV---DRPTSVRTFKEHAYCVYNATWNPRHSD 163
R S ++PT + S + LW D+PT ++ + +NP +++
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG-SITGLKFNPLNTN 178
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILAC--DWNKYDDCLIASASVDKSI---- 217
F ++S + T R+ D + + + I C D + ++ +V I
Sbjct: 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238
Query: 218 ---KIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 266
++W++R H V V +P LA+ S D TV +WD
Sbjct: 239 DGKELWNLRM----------HKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
GHG A+ ++KF P NLL S S D + LW+ + A+ G + H + + D +L
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 292 VEGLLASTGWDELVYVWQ 309
E ++ S G D + +W+
Sbjct: 209 GEKIM-SCGMDHSLKLWR 225
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILAC 198
++ + H + ++PR ++ S S D LR+W+++ I + H E+L+
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
D++ + I S +D S+K+W + + R+ A+ + Y K
Sbjct: 204 DYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 246
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
GHG A+ ++KF P NLL S S D + LW+ + A+ G + H + + D +L
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 292 VEGLLASTGWDELVYVWQ 309
E ++ S G D + +W+
Sbjct: 172 GEKIM-SCGMDHSLKLWR 188
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILAC 198
++ + H + ++PR ++ S S D LR+W+++ I + H E+L+
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
D++ + I S +D S+K+W + + R+ A+ + Y K
Sbjct: 167 DYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 209
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
GHG A+ ++KF P NLL S S D + LW+ + A+ G + H + + D +L
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 292 VEGLLASTGWDELVYVWQ 309
E ++ S G D + +W+
Sbjct: 173 GEKIM-SCGMDHSLKLWR 189
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILAC 198
++ + H + ++PR ++ S S D LR+W+++ I + H E+L+
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
D++ + I S +D S+K+W + + R+ A+ + Y K
Sbjct: 168 DYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
GHG A+ ++KF P NLL S S D + LW+ + A+ G + H + + D +L
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 292 VEGLLASTGWDELVYVWQ 309
E ++ S G D + +W+
Sbjct: 168 GEKIM-SCGMDHSLKLWR 184
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILAC 198
++ + H + ++PR ++ S S D LR+W+++ I + H E+L+
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
D++ + I S +D S+K+W + + R+ A+ + Y K
Sbjct: 163 DYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 205
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 234 GHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED--ALVGRYDHHTEFAVGVDMSVL 291
GHG A+ ++KF P NLL S S D + LW+ + A+ G + H + + D +L
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 292 VEGLLASTGWDELVYVWQ 309
E ++ S G D + +W+
Sbjct: 172 GEKIM-SCGMDHSLKLWR 188
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 142 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMI---IPAHEFEILAC 198
++ + H + ++PR ++ S S D LR+W+++ I + H E+L+
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 199 DWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKV 242
D++ + I S +D S+K+W + + R+ A+ + Y K
Sbjct: 167 DYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 209
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 25/221 (11%)
Query: 63 VYDLAWSESHDSLLIAAVA-DGSVKIYDTALPPTA-NPIRSLHEHTREVHSADYNPTRRD 120
V +AWS +D +A + D SV I++T I L EH+++V ++P+
Sbjct: 110 VKGVAWS--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA- 166
Query: 121 SFITSSWDDTVKLWT--VDRPTSVRTFKEHAYCVYNATWNPRHSDVF--CSASGDCTLRI 176
+SS+DDTV++W D V H V+++ ++ VF CS S D T+R+
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-VFRLCSGSDDSTVRV 225
Query: 177 W--------DVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRN--Y 225
W D +E I+P H+ ++ W + LIAS D + +++ + +
Sbjct: 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGEW 283
Query: 226 RVPIAVLNGHG-YAVRKVKF-SPHRRNLLASCSYDMTVCLW 264
+V HG Y + VK+ + + +LA+ D V W
Sbjct: 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Query: 164 VFCSASGDCTLRIWDVREMGSTMI----IPAHEFEILACDWNKYDDCLIASASVDKSIKI 219
+ + S D +++ V+ T+I AH+ I + W + L+A+ S D ++ I
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSI 84
Query: 220 WDV-----RNYRVPI-AVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF---MVED 270
W R + + + A++ GH V+ V +S + LA+CS D +V +W+ E
Sbjct: 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 271 ALVGRYDHHTEFAVGVDMSVLV----EGLLASTGWDELVYVWQ 309
+ H++ D+ ++ E LLAS+ +D+ V +W+
Sbjct: 144 ECISVLQEHSQ-----DVKHVIWHPSEALLASSSYDDTVRIWK 181
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
D++V LW+ ++ + + + + W + + + +++WDV++
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 193
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
+ +H + + WN Y +++S S I DVR +A L+GH V ++++
Sbjct: 194 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 246 PHRRNLLASCSYDMTVCLW 264
P R+ LAS D V +W
Sbjct: 251 PDGRH-LASGGNDNLVNVW 268
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIP 189
V+LW V + +R H+ V + +WN S + S S + DVR +
Sbjct: 182 VQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDV---RNYRVPIAVLNGHGYAVRKVKFSP 246
H E+ W D +AS D + +W VP+ H AV+ V + P
Sbjct: 239 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 247 HRRNLLAS--CSYDMTVCLWDFMVEDALVGRYDHHTE 281
+ N+LA+ + D + +W+ + A + D H++
Sbjct: 298 WQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQ 333
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNA 155
P+++ +H V + + P + + T D +++W V + H+ V +
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI 337
Query: 156 TWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214
W+P + ++ L IW M + H +L+ + D +ASA+ D
Sbjct: 338 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAAD 396
Query: 215 KSIKIW 220
+++++W
Sbjct: 397 ETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
D++V LW+ ++ + + + + W + + + +++WDV++
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 182
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
+ +H + + WN Y +++S S I DVR +A L+GH V ++++
Sbjct: 183 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 246 PHRRNLLASCSYDMTVCLW 264
P R+ LAS D V +W
Sbjct: 240 PDGRH-LASGGNDNLVNVW 257
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIP 189
V+LW V + +R H+ V + +WN S + S S + DVR +
Sbjct: 171 VQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDV---RNYRVPIAVLNGHGYAVRKVKFSP 246
H E+ W D +AS D + +W VP+ H AV+ V + P
Sbjct: 228 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 247 HRRNLLAS--CSYDMTVCLWDFMVEDALVGRYDHHTE 281
+ N+LA+ + D + +W+ + A + D H++
Sbjct: 287 WQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQ 322
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNA 155
P+++ +H V + + P + + T D +++W V + H+ V +
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI 326
Query: 156 TWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214
W+P + ++ L IW M + H +L+ + D +ASA+ D
Sbjct: 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAAD 385
Query: 215 KSIKIW 220
+++++W
Sbjct: 386 ETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 128 DDTVKLWTVDRPTSVRTFK--EHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST 185
D++V LW+ ++ + + + + W + + + +++WDV++
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAW-IKEGNYLAVGTSSAEVQLWDVQQQKRL 102
Query: 186 MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFS 245
+ +H + + WN Y +++S S I DVR +A L+GH V ++++
Sbjct: 103 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 246 PHRRNLLASCSYDMTVCLW 264
P R+ LAS D V +W
Sbjct: 160 PDGRH-LASGGNDNLVNVW 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 131 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIP 189
V+LW V + +R H+ V + +WN S + S S + DVR +
Sbjct: 91 VQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLS 147
Query: 190 AHEFEILACDWNKYDDCLIASASVDKSIKIWDV---RNYRVPIAVLNGHGYAVRKVKFSP 246
H E+ W D +AS D + +W VP+ H AV+ V + P
Sbjct: 148 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 247 HRRNLLAS--CSYDMTVCLWDFMVEDALVGRYDHHTE 281
+ N+LA+ + D + +W+ + A + D H++
Sbjct: 207 WQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQ 242
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSW--DDTVKLWTVDRPTSVRTFKEHAYCVYNA 155
P+++ +H V + + P + + T D +++W V + H+ V +
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI 246
Query: 156 TWNPRHSDVFCSAS-GDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVD 214
W+P + ++ L IW M + H +L+ + D +ASA+ D
Sbjct: 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAAD 305
Query: 215 KSIKIW 220
+++++W
Sbjct: 306 ETLRLW 311
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 116 PTRRDSF-ITSSWDDTVKLWTVD--RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172
PT +F I SW + V+ W V T + + H V + W+ S VF +AS D
Sbjct: 50 PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDK 108
Query: 173 TLRIWDVREMGSTMIIPAHEFEILACDWNKYDD-CLIASASVDKSIKIWDVRNYRVPIAV 231
T ++WD+ + I H+ + W K + + + S DK++K WD R+ P+ V
Sbjct: 109 TAKMWDLSS-NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMV 166
Query: 232 LN 233
L
Sbjct: 167 LQ 168
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 113 DYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDC 172
++NP + D +TSS DD++ + PT F + +W +DV C
Sbjct: 25 NHNPMK-DIEVTSSPDDSIGCLSFSPPTLPGNF------LIAGSW---ANDVRC------ 68
Query: 173 TLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASASVDKSIKIWDV-RNYRV 227
W+V++ G T IP H +L W+ D + +AS DK+ K+WD+ N +
Sbjct: 69 ----WEVQDSGQT--IPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAI 121
Query: 228 PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALV 273
IA + + +K +P+ ++ S+D T+ WD + ++
Sbjct: 122 QIAQHDAPVKTIHWIK-APNYSCVMTG-SWDKTLKFWDTRSSNPMM 165
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 63 VYDLAWSESHDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADY-NPTRRDS 121
V D+ WS+ S + A D + K++D ++N + +H V + +
Sbjct: 89 VLDVCWSDD-GSKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 122 FITSSWDDTVKLWTV--DRPTSVRTFKEHAYCV 152
+T SWD T+K W P V E YC
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCA 176
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 22/225 (9%)
Query: 50 ALTELVAFDTADGVYDLAWSESHD-SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTRE 108
+++ L D + V + WS HD S L + +G V IYD + +R++ H
Sbjct: 124 SVSALAETDESTYVASVKWS--HDGSFLSVGLGNGLVDIYDVE---SQTKLRTMAGHQAR 178
Query: 109 VHSADYNPTRRDSFITSSWDDTVKLWTVDRPT-SVRTFKEHAYCVYNATWNPRHSDVFCS 167
V +N R + S + V + T + H+ V W SD
Sbjct: 179 VGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW---RSDGLQL 232
Query: 168 ASG--DCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIAS--ASVDKSIKIWD-V 222
ASG D ++IWD R H + A W + L+A+ ++DK I W+
Sbjct: 233 ASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292
Query: 223 RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSY-DMTVCLWDF 266
RV G V + +SPH + ++++ + D + +W +
Sbjct: 293 TGARVNTV---DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 183 GSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNY-RVPIAVLNGHGYAVRK 241
GS ++I E++ Y +A+ S DK+IKI++V I L GH V +
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 242 VKFS-PHRRNLLASCSYDMTVCLW 264
V ++ P +LASCSYD V +W
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIW 84
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 208 IASASVDKSIKIWDVRN-YRVPIAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
+A+ S DK+IKI++V I L GH V +V ++ P +LASCSYD V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 208 IASASVDKSIKIWDVRN-YRVPIAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
+A+ S DK+IKI++V I L GH V +V ++ P +LASCSYD V +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 208 IASASVDKSIKIWDVR-NYRVPIAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
+A+ S DK+IKI++V I L GH V +V ++ P +LASCSYD V +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 209 ASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFS-PHRRNLLASCSYDMTVCLW 264
A+ S DK+IKI++V I L GH V +V ++ P +LASCSYD V +W
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW 82
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
+ SAS D TLRIW S H I++ W D + S S+D S+++W ++
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRLWSLK 318
Query: 224 -NYRVPIAVLNG 234
N + +++++G
Sbjct: 319 QNTLLALSIVDG 330
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 98 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATW 157
P L H + ++N T + +++S D T+++W S F H+ + +A+W
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 158 NPRHSDVFCSASGDCTLRIWDVRE 181
+ CS G ++R+W +++
Sbjct: 298 VGDDKVISCSMDG--SVRLWSLKQ 319
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
+ + GD +++ D I AH EI + + LI+S S D +KIW V+
Sbjct: 113 ILGTTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVK 169
Query: 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
+ P ++ GH V + RN+L S S D T+ LW+
Sbjct: 170 DGSNPRTLI-GHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 164 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR 223
+ + GD +++ D I AH EI + + LI+S S D +KIW V+
Sbjct: 110 ILGTTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVK 166
Query: 224 NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
+ P ++ GH V + RN+L S S D T+ LW+
Sbjct: 167 DGSNPRTLI-GHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 206
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 190 AHEFEILACDWN---KYDDCLIASASVDKSIKIWDVRNYRVPIA-VLNGHGYAVRKVKFS 245
AH+ I + W K + + + S+D +K+W R+ R+ + L GH V V S
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 246 PHRRNLLASCSYDMTVCLWDF 266
H + AS S D + LWD
Sbjct: 90 -HTLPIAASSSLDAHIRLWDL 109
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 7 PFNGYSVKFSP---FYESRLAVATAQNFGILGNGRVHVLD------LSPAAPALTELVAF 57
P + +++ FSP + + V FG+ + + LD LS A + +A
Sbjct: 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181
Query: 58 DTADGV---YDLAWS------ESH------------DSLLIAAVADGSVKIYDTALPPTA 96
DG+ +D+A E H LL+ A DG +KIYD A
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV---QHA 238
Query: 97 NPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNAT 156
N +L H V + + P F++SS D +VK+W V T V TF +H V+
Sbjct: 239 NLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297
Query: 157 WNPRHSDVFCSASGDCTLRIWD 178
+N S + S D + I+D
Sbjct: 298 YNGNGSKI-VSVGDDQEIHIYD 318
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 101 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPR 160
SL + + S Y+P + + + D + ++ + + T + HA + + T++P
Sbjct: 159 SLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 161 HSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIW 220
S + +AS D ++I+DV+ + H +L + DD S+S DKS+K+W
Sbjct: 218 -SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVW 275
Query: 221 DVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 265
DV R + H V VK++ + ++ S D + ++D
Sbjct: 276 DVGT-RTCVHTFFDHQDQVWGVKYNGNGSKIV-SVGDDQEIHIYD 318
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 146 KEHAYCVYNATWN---PRHSDVFCSASGDCTLRIWDVRE--MGSTMIIPAHEFEILACDW 200
+ H +++ W +S+ + S D +++W R+ + + H+ +++ D
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 201 NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNL 251
+ + + AS+S+D I++WD+ N + I ++ + FSP + L
Sbjct: 89 S-HTLPIAASSSLDAHIRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQYL 137
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 145 FKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACD 199
FKE H V +A +NPR + ++S D T+++WD+R + S + HE + A
Sbjct: 197 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 256
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
+N D + + I+++ ++ P ++
Sbjct: 257 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 289
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 18/175 (10%)
Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLW---TVDRPTSVRTFKEHAYCVYNATWNPRH 161
H +V A++NP TSS D TVKLW + S H V A +NP
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 162 SDVFCSASGDCTLRI---WDVREMGSTMIIPAHEFEILA---CDWNKYDDCLIASASVDK 215
S + +R+ +D + +I P +F+ L W+ D ++A D
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 321
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKV---------KFSPHRRNLLASCSYDMTV 261
+ + D R + A G + +R KFSP L + +++ +
Sbjct: 322 QLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILI 376
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132
D L+ + D +VK++D N + H + V++A +NPT +T+ + ++
Sbjct: 216 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 275
Query: 133 LWTV---DRPTSV-----RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
+++ +P + R F+ ATW+P + + D L + D R +
Sbjct: 276 VYSSYDWSKPDQIIIHPHRQFQH--LTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTI 331
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 145 FKE--HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM---GSTMIIPAHEFEILACD 199
FKE H V +A +NPR + ++S D T+++WD+R + S + HE + A
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAY 257
Query: 200 WNKYDDCLIASASVDKSIKIWDVRNYRVPIAVL 232
+N D + + I+++ ++ P ++
Sbjct: 258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 105 HTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTF---KEHAYCVYNATWNPRH 161
H +V A++NP TSS D TVKLW + ++ H V A +NP
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 162 SDVFCSASGDCTLRI---WDVREMGSTMIIPAHEFEILA---CDWNKYDDCLIASASVDK 215
S + +R+ +D + +I P +F+ L W+ D ++A D
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD 322
Query: 216 SIKIWDVRNYRVPIAVLNGHGYAVRKV---------KFSPHRRNLLASCSYDMTV 261
+ + D R + A G + +R KFSP L + +++ +
Sbjct: 323 QLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILI 377
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 73 DSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVK 132
D L+ + D +VK++D N + H + V++A +NPT +T+ + ++
Sbjct: 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276
Query: 133 LWTV---DRPTSV-----RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM 182
+++ +P + R F+ ATW+P + + D L + D R +
Sbjct: 277 VYSSYDWSKPDQIIIHPHRQFQH--LTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTI 332
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 72 HDSLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTV 131
D ++I+ D + K++ + + +L H V A + F+T+S D T+
Sbjct: 113 QDGVVISGSWDKTAKVW-----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167
Query: 132 KLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAH 191
KLW D+ + + + A + H F S S D +++ D H
Sbjct: 168 KLWQNDKVIKTFSGIHNDVVRHLAVVDDGH---FISCSNDGLIKLVDXHTGDVLRTYEGH 224
Query: 192 EFEILACDWNKYDDCLIASASVDKSIKIWDVRN 224
E + D I S D++++IW N
Sbjct: 225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKEN 255
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 122 FITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVRE 181
FI+ S D +KL +RT++ H VY P V C D T+RIW
Sbjct: 198 FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE--DRTVRIWSKEN 255
Query: 182 MGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR 226
+I I + D D ++ S+ D ++I+ R
Sbjct: 256 GSLKQVITLPAISIWSVDCXSNGDIIVGSS--DNLVRIFSQEKSR 298
>pdb|1EJ6|A Chain A, Reovirus Core
pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1289
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 145 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYD 204
+ +H + N P + D+F SA +R W V+E G+T+ I + +L DW+
Sbjct: 1209 YIQHPLQLLNTITLPTNEDLFLSAP---DMREWAVKESGNTICILNSQGFVLPQDWDVLT 1265
Query: 205 DCLIASASVDKSI 217
D + S S+ I
Sbjct: 1266 DTISWSPSIPTYI 1278
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 190 AHEFEILACDWNKYD-DCLIASASVDKSIKIWDV---------RNYRVPIAVLNGHGYAV 239
AH+ I+A DW + +IASAS DK++K+W+ R + + LN ++
Sbjct: 53 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN-KLCTLNDSKGSL 111
Query: 240 RKVKFSPHRRNLLASC 255
VKF+P L +C
Sbjct: 112 YSVKFAPAHLGLKLAC 127
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 124 TSSWDDTVKLWTVD---------RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCT 173
++S+D TVKLW D R + T + +Y+ + P H + + G D
Sbjct: 74 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 133
Query: 174 LRIWD------------VREMGSTMIIPAHEFEILAC-DW--NKYDDCLIASASVDKSIK 218
LR++D EM I PA+ + C W +++ +A ++++++I
Sbjct: 134 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 193
Query: 219 IWDVRNYRVPIAV-LNGHGYAVRKVKFSP 246
++ ++ +A L GH +R + ++P
Sbjct: 194 YQRGKDGKLHVAAKLPGHKSLIRSISWAP 222
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 190 AHEFEILACDWNKYD-DCLIASASVDKSIKIWDV---------RNYRVPIAVLNGHGYAV 239
AH+ I+A DW + +IASAS DK++K+W+ R + + LN ++
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN-KLCTLNDSKGSL 113
Query: 240 RKVKFSPHRRNLLASC 255
VKF+P L +C
Sbjct: 114 YSVKFAPAHLGLKLAC 129
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 124 TSSWDDTVKLWTVD---------RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASG-DCT 173
++S+D TVKLW D R + T + +Y+ + P H + + G D
Sbjct: 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135
Query: 174 LRIWD------------VREMGSTMIIPAHEFEILAC-DW--NKYDDCLIASASVDKSIK 218
LR++D EM I PA+ + C W +++ +A ++++++I
Sbjct: 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195
Query: 219 IWDVRNYRVPIAV-LNGHGYAVRKVKFSP 246
++ ++ +A L GH +R + ++P
Sbjct: 196 YQRGKDGKLHVAAKLPGHKSLIRSISWAP 224
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 190 AHEFEILACDWNKYD-DCLIASASVDKSIKIWDV---------RNYRVPIAVLNGHGYAV 239
AH+ I+A DW + +IASAS DK++K+W+ R + + LN ++
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN-KLCTLNDSKGSL 113
Query: 240 RKVKFSPHRRNLLASC 255
VKF+P L +C
Sbjct: 114 YSVKFAPAHLGLKLAC 129
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 160 RHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACD---WNKYDDCLIASASVDKS 216
+ D+ S S D + +W + H I + D + KY C+ SA D S
Sbjct: 42 KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY--CVTGSA--DYS 97
Query: 217 IKIWDVRN------YRVPIAVLNGHGYAVRKVKFSPHRRNLLA 253
IK+WDV N ++ P+ V++V+FSP LA
Sbjct: 98 IKLWDVSNGQCVATWKSPV--------PVKRVEFSPCGNYFLA 132
>pdb|2PFY|A Chain A, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|B Chain B, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|C Chain C, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|D Chain D, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 122 FITSSWDDTVKLWTVDRP-TSVRTFKEHAYCVYNATWNPR 160
F+ SS++++ KLW RP + R K+ VY + W P+
Sbjct: 84 FLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQ 123
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 22 RLAVATAQNFGILGNGRVHVLDLSPAAPALTELVAFDTADG 62
R AVATAQ L +G V L ++ A L +L AF+ ADG
Sbjct: 11 RAAVATAQKIAPLAHGEVAALTMASAPLKLPDL-AFEDADG 50
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain
pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn
pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
Reveals An Interplay Between The Active Site And The
Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
Length = 410
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 97 NPIRSLHEHTREVHSADYNP---TRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVY 153
NP H + E+ +Y+P R+ + SWDD+V +W VD T + + E
Sbjct: 49 NPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPIW-VDTSTELESMLEDLKNTK 107
Query: 154 NATWNPRHSDVFCSASGDCTLRI 176
+ H D C ++I
Sbjct: 108 EIAVDLEHHDYRSYYGIVCLMQI 130
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 22 RLAVATAQNFGILGNGRVHVLDLSPAAPAL---TELVAFDTADGVYDLAWSESHDSLLIA 78
R +AT N NG V + +LS P ++ + ++ + + +S L IA
Sbjct: 197 RGLIATGFN-----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251
Query: 79 AVAD--GSVKIYDTALP--------PTANPIRSLHE--HTREVHSADYNPTRRDSFITSS 126
++ G + +Y+T PT + SL E H+ V S +N + ++ ++
Sbjct: 252 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAG 310
Query: 127 WDDTVKLWTVDRPTSVRTFKEH 148
WD ++ W V + T H
Sbjct: 311 WDGKLRFWDVKTKERITTLNMH 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 22 RLAVATAQNFGILGNGRVHVLDLSPAAPAL---TELVAFDTADGVYDLAWSESHDSLLIA 78
R +AT N NG V + +LS P ++ + ++ + + +S L IA
Sbjct: 207 RGLIATGFN-----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 261
Query: 79 AVAD--GSVKIYDTALP--------PTANPIRSLHE--HTREVHSADYNPTRRDSFITSS 126
++ G + +Y+T PT + SL E H+ V S +N + ++ ++
Sbjct: 262 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAG 320
Query: 127 WDDTVKLWTVDRPTSVRTFKEH 148
WD ++ W V + T H
Sbjct: 321 WDGKLRFWDVKTKERITTLNMH 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,440,534
Number of Sequences: 62578
Number of extensions: 425685
Number of successful extensions: 1842
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 299
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)